Query psy11786
Match_columns 108
No_of_seqs 128 out of 1171
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 18:55:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 2.9E-40 6.3E-45 266.5 11.0 105 3-107 137-246 (645)
2 KOG0238|consensus 100.0 3E-38 6.5E-43 252.9 9.1 103 5-107 135-242 (670)
3 COG1038 PycA Pyruvate carboxyl 100.0 5.3E-35 1.2E-39 242.9 10.2 102 5-106 145-251 (1149)
4 COG0439 AccC Biotin carboxylas 100.0 1.2E-31 2.6E-36 214.3 12.3 103 5-107 139-246 (449)
5 KOG0369|consensus 100.0 7.6E-32 1.6E-36 221.7 9.2 102 5-106 171-277 (1176)
6 PF02786 CPSase_L_D2: Carbamoy 100.0 1.8E-31 4E-36 195.6 9.9 102 5-106 25-131 (211)
7 KOG0368|consensus 99.9 1.2E-27 2.6E-32 206.8 7.6 99 5-107 226-329 (2196)
8 PRK08654 pyruvate carboxylase 99.9 1.8E-25 3.9E-30 180.7 12.9 102 5-106 139-245 (499)
9 TIGR01235 pyruv_carbox pyruvat 99.9 7.6E-23 1.6E-27 177.7 12.3 102 5-106 139-245 (1143)
10 PRK08463 acetyl-CoA carboxylas 99.9 1.4E-22 3E-27 162.9 12.9 102 5-106 139-245 (478)
11 PRK07178 pyruvate carboxylase 99.9 1.3E-22 2.8E-27 162.7 12.2 101 5-105 138-243 (472)
12 PRK12999 pyruvate carboxylase; 99.9 3.2E-22 6.9E-27 174.0 12.4 102 5-106 143-249 (1146)
13 PRK12833 acetyl-CoA carboxylas 99.9 5.3E-22 1.1E-26 159.0 12.6 101 5-106 142-247 (467)
14 PRK05586 biotin carboxylase; V 99.9 1.1E-20 2.4E-25 150.4 12.7 102 5-106 139-245 (447)
15 PRK08462 biotin carboxylase; V 99.8 1E-19 2.2E-24 144.4 12.5 102 5-106 141-247 (445)
16 TIGR02712 urea_carbox urea car 99.8 9.6E-20 2.1E-24 159.2 11.9 102 5-106 137-243 (1201)
17 TIGR00514 accC acetyl-CoA carb 99.8 3.5E-19 7.6E-24 141.7 12.6 102 5-106 139-245 (449)
18 PRK08591 acetyl-CoA carboxylas 99.8 6.1E-19 1.3E-23 139.9 13.0 102 5-106 139-245 (451)
19 PRK06111 acetyl-CoA carboxylas 99.7 3.6E-16 7.8E-21 123.8 12.3 102 5-106 139-245 (450)
20 PF07478 Dala_Dala_lig_C: D-al 99.6 1.6E-14 3.4E-19 105.2 8.6 68 10-84 25-95 (203)
21 PLN02735 carbamoyl-phosphate s 99.5 1.2E-13 2.6E-18 120.5 10.7 86 6-95 725-826 (1102)
22 PRK14570 D-alanyl-alanine synt 99.4 1.2E-12 2.6E-17 102.6 9.7 65 13-84 166-233 (364)
23 TIGR01369 CPSaseII_lrg carbamo 99.4 1.6E-12 3.6E-17 113.0 10.8 94 5-106 149-253 (1050)
24 PLN02948 phosphoribosylaminoim 99.4 4.8E-12 1E-16 104.4 11.8 95 6-107 144-244 (577)
25 PLN02735 carbamoyl-phosphate s 99.4 2.7E-12 5.9E-17 112.1 10.8 92 6-105 167-270 (1102)
26 PRK01966 ddl D-alanyl-alanine 99.3 7.8E-12 1.7E-16 96.5 8.8 62 11-79 155-219 (333)
27 PRK14573 bifunctional D-alanyl 99.3 1.1E-11 2.5E-16 105.1 10.5 67 11-83 603-672 (809)
28 PRK14572 D-alanyl-alanine synt 99.3 1.3E-11 2.9E-16 95.7 9.9 64 9-79 162-228 (347)
29 PRK14568 vanB D-alanine--D-lac 99.3 1.3E-11 2.9E-16 95.5 8.4 61 14-81 161-224 (343)
30 PRK05294 carB carbamoyl phosph 99.3 4.7E-11 1E-15 104.0 11.3 83 6-96 151-236 (1066)
31 COG0458 CarB Carbamoylphosphat 99.3 3.3E-11 7.1E-16 95.4 9.0 84 5-96 137-223 (400)
32 PRK06019 phosphoribosylaminoim 99.2 1.7E-10 3.8E-15 90.2 12.2 75 6-88 123-201 (372)
33 PRK14569 D-alanyl-alanine synt 99.2 6.1E-11 1.3E-15 90.2 8.9 61 13-81 125-188 (296)
34 PRK06524 biotin carboxylase-li 99.2 1.3E-10 2.9E-15 94.4 11.4 73 6-86 167-244 (493)
35 PRK14571 D-alanyl-alanine synt 99.2 8.6E-11 1.9E-15 89.0 8.7 62 14-82 121-185 (299)
36 PRK12815 carB carbamoyl phosph 99.2 1.6E-10 3.4E-15 100.9 10.8 84 5-96 150-236 (1068)
37 PRK14016 cyanophycin synthetas 99.2 4.3E-11 9.2E-16 101.0 6.5 88 5-98 236-342 (727)
38 PLN02257 phosphoribosylamine-- 99.2 2.9E-10 6.3E-15 91.1 10.9 85 5-97 124-213 (434)
39 TIGR03103 trio_acet_GNAT GNAT- 99.1 7E-11 1.5E-15 97.0 6.4 81 6-92 320-418 (547)
40 PRK01372 ddl D-alanine--D-alan 99.1 3.6E-10 7.8E-15 85.3 9.5 68 8-82 123-193 (304)
41 TIGR01161 purK phosphoribosyla 99.1 1.1E-09 2.3E-14 84.7 12.3 75 6-88 121-199 (352)
42 PF02222 ATP-grasp: ATP-grasp 99.1 3.9E-10 8.5E-15 80.6 8.9 94 5-107 15-114 (172)
43 PRK13790 phosphoribosylamine-- 99.1 3.7E-10 8E-15 88.7 9.5 71 6-81 90-163 (379)
44 PRK13789 phosphoribosylamine-- 99.1 5.5E-10 1.2E-14 89.2 10.5 79 5-87 130-213 (426)
45 TIGR01142 purT phosphoribosylg 99.1 7.9E-10 1.7E-14 85.8 10.8 79 6-86 124-205 (380)
46 PRK09288 purT phosphoribosylgl 99.1 1.1E-09 2.4E-14 85.3 10.9 81 5-87 136-219 (395)
47 TIGR01205 D_ala_D_alaTIGR D-al 99.1 7.2E-10 1.6E-14 83.9 9.4 63 12-81 140-205 (315)
48 TIGR01369 CPSaseII_lrg carbamo 99.1 1E-09 2.2E-14 95.7 10.3 77 5-86 691-770 (1050)
49 PRK00885 phosphoribosylamine-- 99.0 2.5E-09 5.4E-14 84.5 10.4 78 6-87 125-207 (420)
50 PRK05294 carB carbamoyl phosph 99.0 1.9E-09 4E-14 94.2 10.2 72 6-81 692-766 (1066)
51 PF13535 ATP-grasp_4: ATP-gras 99.0 3E-09 6.5E-14 73.8 8.7 80 5-88 26-108 (184)
52 TIGR00877 purD phosphoribosyla 99.0 6.3E-09 1.4E-13 82.1 10.1 78 5-87 126-209 (423)
53 TIGR01435 glu_cys_lig_rel glut 98.9 6E-09 1.3E-13 88.3 9.4 65 8-79 500-571 (737)
54 PRK05784 phosphoribosylamine-- 98.9 1.3E-08 2.8E-13 82.8 10.5 81 5-87 132-224 (486)
55 PRK12815 carB carbamoyl phosph 98.9 8.4E-09 1.8E-13 90.2 9.9 71 5-82 692-765 (1068)
56 COG1181 DdlA D-alanine-D-alani 98.9 4.6E-09 1E-13 81.4 7.3 64 11-81 135-201 (317)
57 PRK10446 ribosomal protein S6 98.9 1.4E-08 3E-13 77.2 9.1 75 7-90 123-203 (300)
58 PF01071 GARS_A: Phosphoribosy 98.9 2.7E-08 5.8E-13 72.5 9.6 87 5-99 24-116 (194)
59 PRK12767 carbamoyl phosphate s 98.8 2.2E-08 4.9E-13 76.0 9.3 75 6-91 134-213 (326)
60 TIGR02068 cya_phycin_syn cyano 98.8 2.5E-08 5.4E-13 85.7 9.7 77 5-91 235-315 (864)
61 PRK02471 bifunctional glutamat 98.8 3.6E-08 7.9E-13 83.8 8.9 67 6-79 511-584 (752)
62 COG0151 PurD Phosphoribosylami 98.8 9.7E-08 2.1E-12 76.3 10.4 87 5-99 125-216 (428)
63 PRK02186 argininosuccinate lya 98.8 5.9E-08 1.3E-12 83.5 9.7 70 6-81 130-202 (887)
64 KOG0370|consensus 98.7 4.6E-09 1E-13 90.3 2.0 81 5-95 520-603 (1435)
65 PRK07206 hypothetical protein; 98.7 1.8E-07 3.9E-12 73.5 10.1 78 6-86 131-216 (416)
66 PRK06395 phosphoribosylamine-- 98.7 1.9E-07 4.2E-12 74.8 9.4 77 6-87 129-209 (435)
67 KOG0370|consensus 98.6 2.9E-08 6.3E-13 85.6 4.2 75 5-84 1055-1132(1435)
68 TIGR02144 LysX_arch Lysine bio 98.5 5.9E-07 1.3E-11 66.9 8.8 72 6-79 110-185 (280)
69 TIGR00768 rimK_fam alpha-L-glu 98.5 7.4E-07 1.6E-11 65.8 9.0 70 6-78 111-185 (277)
70 COG0027 PurT Formate-dependent 98.5 7.9E-07 1.7E-11 69.3 8.7 69 5-77 136-207 (394)
71 TIGR01016 sucCoAbeta succinyl- 98.5 1.5E-06 3.3E-11 68.4 10.1 84 5-88 26-126 (386)
72 PF08443 RimK: RimK-like ATP-g 98.4 1.2E-06 2.6E-11 62.7 6.4 68 6-79 26-99 (190)
73 PRK13278 purP 5-formaminoimida 98.3 4.3E-06 9.3E-11 65.9 9.1 63 15-79 146-211 (358)
74 PRK00696 sucC succinyl-CoA syn 98.3 7.5E-06 1.6E-10 64.6 9.3 83 5-87 26-124 (388)
75 COG0026 PurK Phosphoribosylami 98.1 2.5E-05 5.4E-10 61.9 8.6 95 5-107 121-221 (375)
76 PF13549 ATP-grasp_5: ATP-gras 98.1 4.6E-05 9.9E-10 56.5 9.3 85 5-89 33-131 (222)
77 PRK13277 5-formaminoimidazole- 98.0 4.1E-05 8.9E-10 60.6 8.1 72 14-86 148-226 (366)
78 PF15632 ATPgrasp_Ter: ATP-gra 97.9 6.3E-05 1.4E-09 58.8 8.6 77 5-86 129-224 (329)
79 PF08442 ATP-grasp_2: ATP-gras 97.6 0.00045 9.7E-09 50.6 7.9 79 5-83 25-118 (202)
80 PRK06849 hypothetical protein; 97.5 0.00034 7.4E-09 54.8 6.9 71 6-87 139-213 (389)
81 COG0189 RimK Glutathione synth 97.4 0.00055 1.2E-08 53.2 6.7 65 10-79 147-216 (318)
82 PLN02941 inositol-tetrakisphos 97.2 0.0015 3.2E-08 51.2 7.4 57 12-81 146-209 (328)
83 COG0045 SucC Succinyl-CoA synt 97.2 0.0026 5.7E-08 50.7 8.8 83 5-87 26-122 (387)
84 PRK14046 malate--CoA ligase su 97.2 0.0047 1E-07 49.2 10.3 84 5-88 26-125 (392)
85 PRK12458 glutathione synthetas 97.2 0.0019 4.1E-08 50.4 7.8 67 6-79 149-223 (338)
86 TIGR01380 glut_syn glutathione 97.0 0.0039 8.5E-08 48.0 7.8 69 6-79 142-215 (312)
87 PRK05246 glutathione synthetas 97.0 0.0054 1.2E-07 47.1 8.1 68 6-78 143-215 (316)
88 PF02655 ATP-grasp_3: ATP-gras 97.0 0.00085 1.8E-08 46.8 3.3 57 17-87 30-89 (161)
89 PLN02235 ATP citrate (pro-S)-l 96.9 0.011 2.4E-07 47.8 9.8 79 5-84 35-129 (423)
90 PLN00124 succinyl-CoA ligase [ 96.9 0.0098 2.1E-07 48.1 9.0 80 5-85 53-158 (422)
91 COG3919 Predicted ATP-grasp en 96.3 0.0098 2.1E-07 46.7 5.6 62 9-74 138-207 (415)
92 COG1759 5-formaminoimidazole-4 96.3 0.026 5.6E-07 44.4 7.5 64 13-77 145-212 (361)
93 KOG0237|consensus 96.0 0.045 9.7E-07 46.3 8.2 73 6-81 131-209 (788)
94 PF11379 DUF3182: Protein of u 96.0 0.05 1.1E-06 43.0 7.9 67 8-77 124-195 (355)
95 PF02750 Synapsin_C: Synapsin, 95.1 0.091 2E-06 38.7 6.2 58 17-80 49-109 (203)
96 COG2232 Predicted ATP-dependen 94.6 0.06 1.3E-06 42.7 4.4 52 19-87 151-203 (389)
97 TIGR02291 rimK_rel_E_lig alpha 93.9 0.39 8.4E-06 37.6 7.6 32 8-39 66-99 (317)
98 PF02955 GSH-S_ATP: Prokaryoti 93.0 0.3 6.4E-06 35.0 5.3 67 6-77 20-91 (173)
99 PF03133 TTL: Tubulin-tyrosine 91.0 0.23 5E-06 37.4 2.9 52 19-79 67-127 (292)
100 PF14397 ATPgrasp_ST: Sugar-tr 90.9 0.5 1.1E-05 36.1 4.8 34 5-38 59-96 (285)
101 PF05770 Ins134_P3_kin: Inosit 82.1 2.8 6.1E-05 32.7 4.5 53 15-80 135-194 (307)
102 KOG2799|consensus 78.5 5.2 0.00011 32.4 5.0 38 5-42 48-100 (434)
103 KOG2156|consensus 75.6 1 2.2E-05 37.9 0.4 37 6-42 292-332 (662)
104 COG1255 Uncharacterized protei 74.1 5.8 0.00012 27.1 3.6 30 7-36 84-117 (129)
105 PF14243 DUF4343: Domain of un 72.3 7.4 0.00016 26.4 3.9 52 19-78 3-56 (130)
106 PF14398 ATPgrasp_YheCD: YheC/ 63.1 11 0.00023 28.4 3.5 56 6-68 44-123 (262)
107 PF11823 DUF3343: Protein of u 60.4 34 0.00075 20.4 4.9 43 7-49 14-61 (73)
108 PF14403 CP_ATPgrasp_2: Circul 58.3 26 0.00055 28.9 5.1 62 9-79 329-395 (445)
109 COG4029 Uncharacterized protei 56.5 64 0.0014 22.3 6.3 46 3-50 15-61 (142)
110 PF14305 ATPgrasp_TupA: TupA-l 55.9 33 0.00071 25.5 5.0 54 15-68 53-120 (239)
111 PRK04148 hypothetical protein; 52.9 25 0.00054 24.2 3.7 28 8-35 92-123 (134)
112 PF04677 CwfJ_C_1: Protein sim 50.4 70 0.0015 21.4 5.5 40 38-78 68-107 (121)
113 PRK00341 hypothetical protein; 49.3 47 0.001 21.2 4.3 31 19-49 48-83 (91)
114 KOG3895|consensus 48.9 18 0.0004 29.4 2.8 57 19-81 241-299 (488)
115 cd03375 TPP_OGFOR Thiamine pyr 48.8 39 0.00085 24.0 4.3 29 32-66 155-183 (193)
116 cd03371 TPP_PpyrDC Thiamine py 48.2 35 0.00076 24.2 4.0 32 30-67 132-163 (188)
117 KOG1783|consensus 48.1 24 0.00052 22.0 2.7 37 13-50 11-50 (77)
118 KOG2157|consensus 47.8 22 0.00047 29.7 3.2 49 19-69 201-252 (497)
119 TIGR03272 methan_mark_6 putati 47.0 94 0.002 21.5 6.6 45 4-50 8-53 (132)
120 cd03376 TPP_PFOR_porB_like Thi 46.6 38 0.00082 25.0 4.1 30 32-67 171-200 (235)
121 PF02775 TPP_enzyme_C: Thiamin 46.1 47 0.001 22.3 4.2 25 33-63 126-152 (153)
122 PF09875 DUF2102: Uncharacteri 45.9 87 0.0019 20.8 6.6 45 4-50 9-54 (104)
123 PRK00907 hypothetical protein; 45.6 47 0.001 21.3 3.9 30 20-49 50-84 (92)
124 COG2921 Uncharacterized conser 44.7 60 0.0013 21.0 4.2 30 20-49 48-82 (90)
125 cd02015 TPP_AHAS Thiamine pyro 43.0 43 0.00093 23.4 3.8 30 32-67 145-174 (186)
126 TIGR01361 DAHP_synth_Bsub phos 42.7 55 0.0012 24.7 4.5 43 10-64 124-168 (260)
127 TIGR00222 panB 3-methyl-2-oxob 42.3 1.3E+02 0.0028 23.1 6.4 72 7-81 118-203 (263)
128 PRK05198 2-dehydro-3-deoxyphos 42.2 62 0.0013 24.9 4.7 46 9-66 115-162 (264)
129 cd02004 TPP_BZL_OCoD_HPCL Thia 41.6 66 0.0014 22.0 4.5 29 32-66 143-171 (172)
130 cd02010 TPP_ALS Thiamine pyrop 40.6 61 0.0013 22.6 4.2 30 32-67 141-170 (177)
131 PRK04998 hypothetical protein; 40.4 92 0.002 19.5 4.9 30 20-49 46-80 (88)
132 cd02009 TPP_SHCHC_synthase Thi 40.4 55 0.0012 22.7 4.0 29 32-66 146-174 (175)
133 cd02018 TPP_PFOR Thiamine pyro 39.9 58 0.0012 24.1 4.2 33 29-67 168-203 (237)
134 cd02003 TPP_IolD Thiamine pyro 39.8 63 0.0014 23.1 4.3 28 33-66 156-183 (205)
135 TIGR03586 PseI pseudaminic aci 39.7 1E+02 0.0022 24.2 5.7 44 10-66 126-170 (327)
136 COG1821 Predicted ATP-utilizin 38.6 28 0.00061 27.1 2.3 41 17-77 137-180 (307)
137 PRK06163 hypothetical protein; 38.5 69 0.0015 23.2 4.3 30 32-67 144-173 (202)
138 PRK13396 3-deoxy-7-phosphohept 36.5 84 0.0018 25.1 4.8 45 10-66 200-246 (352)
139 KOG1199|consensus 36.3 93 0.002 23.1 4.6 40 12-62 48-88 (260)
140 TIGR03846 sulfopy_beta sulfopy 35.9 69 0.0015 22.6 3.9 31 29-66 125-155 (181)
141 cd04865 LigD_Pol_like_2 LigD_P 35.7 54 0.0012 24.6 3.4 23 11-34 125-148 (228)
142 cd02005 TPP_PDC_IPDC Thiamine 35.7 75 0.0016 22.2 4.1 30 32-67 144-174 (183)
143 PLN03033 2-dehydro-3-deoxyphos 35.2 89 0.0019 24.4 4.6 46 9-66 121-168 (290)
144 cd02013 TPP_Xsc_like Thiamine 35.1 80 0.0017 22.3 4.2 33 32-67 147-179 (196)
145 PRK02047 hypothetical protein; 34.6 1.2E+02 0.0026 19.2 5.7 30 20-49 49-83 (91)
146 PRK12595 bifunctional 3-deoxy- 34.5 86 0.0019 24.9 4.6 47 9-67 216-264 (360)
147 cd02002 TPP_BFDC Thiamine pyro 34.5 71 0.0015 21.9 3.7 27 32-64 150-176 (178)
148 TIGR01362 KDO8P_synth 3-deoxy- 34.4 79 0.0017 24.2 4.2 46 9-66 107-154 (258)
149 TIGR03764 ICE_PFGI_1_parB inte 34.4 2E+02 0.0043 22.1 6.3 60 6-65 30-93 (258)
150 cd02001 TPP_ComE_PpyrDC Thiami 33.8 78 0.0017 21.7 3.8 29 32-66 126-154 (157)
151 cd02006 TPP_Gcl Thiamine pyrop 33.7 89 0.0019 22.1 4.2 34 32-67 161-194 (202)
152 cd02014 TPP_POX Thiamine pyrop 33.5 76 0.0017 21.9 3.8 29 32-66 144-172 (178)
153 PRK09628 oorB 2-oxoglutarate-a 33.4 69 0.0015 24.5 3.8 32 32-69 172-203 (277)
154 PRK03511 minC septum formation 32.9 1.4E+02 0.003 22.1 5.3 43 19-63 5-51 (228)
155 PF03686 UPF0146: Uncharacteri 32.3 51 0.0011 22.6 2.6 28 7-34 84-115 (127)
156 PRK13397 3-deoxy-7-phosphohept 31.8 85 0.0018 23.8 4.0 46 9-66 113-160 (250)
157 cd04862 PaeLigD_Pol_like PaeLi 31.3 58 0.0013 24.4 3.0 23 11-34 124-147 (227)
158 TIGR03569 NeuB_NnaB N-acetylne 31.2 1.4E+02 0.003 23.5 5.2 45 9-66 124-171 (329)
159 PF06857 ACP: Malonate decarbo 31.1 1.4E+02 0.0031 18.9 5.9 38 19-56 17-56 (87)
160 cd04863 MtLigD_Pol_like MtLigD 30.8 61 0.0013 24.4 3.0 23 11-34 128-151 (231)
161 TIGR02778 ligD_pol DNA polymer 30.7 60 0.0013 24.6 3.0 23 11-34 140-163 (245)
162 PF13899 Thioredoxin_7: Thiore 30.1 46 0.001 19.9 2.0 24 5-28 4-28 (82)
163 TIGR00637 ModE_repress ModE mo 30.0 1.5E+02 0.0033 18.9 4.5 40 10-49 37-79 (99)
164 PRK07418 acetolactate synthase 29.7 92 0.002 26.1 4.2 32 29-67 528-559 (616)
165 cd04866 LigD_Pol_like_3 LigD_P 29.2 67 0.0014 24.1 3.0 23 11-34 119-142 (223)
166 PRK08673 3-deoxy-7-phosphohept 29.0 1.1E+02 0.0023 24.2 4.3 46 9-66 191-238 (335)
167 cd04861 LigD_Pol_like LigD_Pol 28.8 69 0.0015 24.0 3.0 23 11-34 124-147 (227)
168 PRK05858 hypothetical protein; 28.5 1E+02 0.0022 25.4 4.2 30 32-67 501-530 (542)
169 KOG1017|consensus 27.2 1.2E+02 0.0026 22.9 4.0 25 26-50 135-159 (267)
170 cd04864 LigD_Pol_like_1 LigD_P 27.0 77 0.0017 23.8 3.0 23 11-34 125-148 (228)
171 cd00568 TPP_enzymes Thiamine p 26.9 1.4E+02 0.0031 19.7 4.2 25 33-63 141-165 (168)
172 PRK08527 acetolactate synthase 26.6 1.2E+02 0.0025 25.2 4.3 34 27-67 505-538 (563)
173 TIGR02049 gshA_ferroox glutama 26.4 1.1E+02 0.0025 24.9 4.0 49 19-67 258-312 (403)
174 PF14044 NETI: NETI protein 26.0 74 0.0016 18.8 2.2 24 2-25 5-32 (57)
175 PRK09107 acetolactate synthase 25.9 1.2E+02 0.0026 25.4 4.3 32 29-67 523-554 (595)
176 PRK13253 citrate lyase subunit 25.8 1.9E+02 0.0041 18.6 5.8 37 19-55 18-56 (92)
177 KOG2814|consensus 25.6 1.3E+02 0.0028 24.0 4.1 45 19-63 170-219 (345)
178 CHL00139 rpl18 ribosomal prote 25.6 1E+02 0.0022 20.4 3.1 19 69-87 24-42 (109)
179 PRK00311 panB 3-methyl-2-oxobu 24.9 3.1E+02 0.0068 20.8 6.2 69 9-81 121-204 (264)
180 TIGR03455 HisG_C-term ATP phos 24.9 2E+02 0.0043 18.5 5.1 53 5-62 39-93 (100)
181 COG0274 DeoC Deoxyribose-phosp 24.6 1.9E+02 0.0041 21.8 4.7 39 3-47 166-205 (228)
182 PF04312 DUF460: Protein of un 24.2 78 0.0017 22.0 2.4 21 3-23 61-82 (138)
183 CHL00099 ilvB acetohydroxyacid 24.0 1.4E+02 0.003 24.9 4.2 32 29-67 524-555 (585)
184 PRK04804 minC septum formation 23.9 2.2E+02 0.0048 20.8 5.0 43 19-63 5-51 (221)
185 PRK13398 3-deoxy-7-phosphohept 23.6 1.5E+02 0.0033 22.4 4.1 44 9-64 125-170 (266)
186 PRK10665 nitrogen regulatory p 23.4 1.6E+02 0.0034 19.4 3.7 34 33-66 63-97 (112)
187 PRK10858 nitrogen regulatory p 23.4 1.5E+02 0.0033 19.5 3.6 36 31-66 61-97 (112)
188 PRK12474 hypothetical protein; 23.4 1.2E+02 0.0025 24.8 3.7 27 32-64 490-516 (518)
189 PRK15339 type III secretion sy 23.4 2.2E+02 0.0048 24.1 5.3 69 4-78 38-112 (559)
190 PF08013 Tagatose_6_P_K: Tagat 23.3 1.1E+02 0.0025 25.1 3.5 39 8-50 31-77 (424)
191 cd00474 SUI1_eIF1 The SUI1/eIF 23.1 1.9E+02 0.0042 17.7 4.0 44 26-75 10-53 (77)
192 PRK08611 pyruvate oxidase; Pro 22.6 1.3E+02 0.0027 25.1 3.8 30 32-67 501-530 (576)
193 TIGR02418 acolac_catab acetola 22.5 1.3E+02 0.0028 24.7 3.8 30 32-67 501-530 (539)
194 TIGR00034 aroFGH phospho-2-deh 22.1 2.5E+02 0.0054 22.5 5.1 59 5-69 239-303 (344)
195 PLN02470 acetolactate synthase 21.9 1.3E+02 0.0029 25.0 3.8 30 32-67 528-557 (585)
196 COG0028 IlvB Thiamine pyrophos 21.6 1.5E+02 0.0032 24.9 4.0 41 21-68 490-532 (550)
197 PF12261 T_hemolysin: Thermost 21.6 11 0.00023 27.2 -2.4 15 57-71 57-71 (179)
198 PRK12457 2-dehydro-3-deoxyphos 21.6 1.5E+02 0.0032 23.1 3.7 47 9-67 121-169 (281)
199 PF01318 Bromo_coat: Bromoviru 21.5 30 0.00064 24.9 -0.1 17 15-31 24-40 (188)
200 PRK08322 acetolactate synthase 21.4 1.4E+02 0.003 24.5 3.7 32 29-67 497-528 (547)
201 TIGR03457 sulphoacet_xsc sulfo 21.2 1.6E+02 0.0036 24.3 4.2 37 27-67 521-557 (579)
202 PRK07064 hypothetical protein; 20.8 1.4E+02 0.003 24.4 3.7 30 32-67 499-528 (544)
203 PRK07789 acetolactate synthase 20.6 1.7E+02 0.0037 24.5 4.2 33 29-67 544-576 (612)
204 PRK09124 pyruvate dehydrogenas 20.5 1.5E+02 0.0032 24.6 3.8 30 32-67 501-530 (574)
205 COG0095 LplA Lipoate-protein l 20.4 1.2E+02 0.0026 22.5 3.0 28 11-38 58-94 (248)
206 PRK07586 hypothetical protein; 20.2 1.5E+02 0.0032 24.1 3.7 26 32-63 486-511 (514)
207 PRK06456 acetolactate synthase 20.2 1.5E+02 0.0032 24.5 3.7 32 29-67 514-545 (572)
208 PRK08273 thiamine pyrophosphat 20.1 1.8E+02 0.004 24.3 4.3 30 32-67 517-546 (597)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=2.9e-40 Score=266.51 Aligned_cols=105 Identities=28% Similarity=0.452 Sum_probs=101.7
Q ss_pred ccccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 3 KNKAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 3 ~~~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
..++.+++..+|++|| ||+||+++|| +||++|++.+++.++|++++++|+++|||+++|||||+..|||||+|||+|
T Consensus 137 ~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD 216 (645)
T COG4770 137 PIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFAD 216 (645)
T ss_pred cccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEec
Confidence 3578899999999999 9999999887 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEecccccccccCce--eccCCCCC
Q psy11786 80 KYGDVVHLYDRDCPIYAEKI--SESHPKSL 107 (108)
Q Consensus 80 ~~g~~~~l~eR~Csiq~r~q--~e~~p~~~ 107 (108)
+|||++||+||||||||||| |||||+++
T Consensus 217 ~HGNvv~LgERdCSlQRRhQKVIEEAPaP~ 246 (645)
T COG4770 217 QHGNVVHLGERDCSLQRRHQKVIEEAPAPF 246 (645)
T ss_pred CCCCEEEeeccccchhhhcchhhhcCCCCC
Confidence 99999999999999999999 99999986
No 2
>KOG0238|consensus
Probab=100.00 E-value=3e-38 Score=252.85 Aligned_cols=103 Identities=32% Similarity=0.456 Sum_probs=100.1
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+.|.+|| |||||+++|| +||+++++++|+.+.|+.+.++|.++|||+.+|+|+||++||||||||++|++
T Consensus 135 qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~h 214 (670)
T KOG0238|consen 135 QSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKH 214 (670)
T ss_pred ccHHHHHHHHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCC
Confidence 77889999999999 9999999887 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKSL 107 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~~ 107 (108)
||++||+||||||||||| |||||++.
T Consensus 215 Gnav~l~ERdCSvQRRnQKiiEEaPap~ 242 (670)
T KOG0238|consen 215 GNAVHLGERDCSVQRRNQKIIEEAPAPN 242 (670)
T ss_pred CcEEEecccccchhhhhhhhhhcCCCCC
Confidence 999999999999999999 99999974
No 3
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=5.3e-35 Score=242.93 Aligned_cols=102 Identities=33% Similarity=0.562 Sum_probs=99.2
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++++++.++++++| |||||++.|| +|||+|++.++|.++++.|.++|+++||++.+|||+|+++|+|||||+|+|.+
T Consensus 145 ~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~ 224 (1149)
T COG1038 145 ETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTH 224 (1149)
T ss_pred ccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCC
Confidence 56899999999999 9999999877 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
||++||+|||||+||||| +|.||+.
T Consensus 225 GnvvHLfERDCSvQRRhQKVVE~APa~ 251 (1149)
T COG1038 225 GNVVHLFERDCSVQRRHQKVVEVAPAP 251 (1149)
T ss_pred CCEEEEeecccchhhccceeEEecCCC
Confidence 999999999999999999 9999985
No 4
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.97 E-value=1.2e-31 Score=214.25 Aligned_cols=103 Identities=31% Similarity=0.458 Sum_probs=98.8
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.++++| ||||||+.|| +||++|++.++|.++|..+++++...||++.+++|+|++++||+++|+++|++
T Consensus 139 ~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~ 218 (449)
T COG0439 139 ADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGH 218 (449)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCc
Confidence 45678999999999 9999998777 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKSL 107 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~~ 107 (108)
|+++++++||||+||||| +|+||+++
T Consensus 219 g~~i~l~eRdcsiqrr~qkvieeapsp~ 246 (449)
T COG0439 219 GNVIHLGERDCSIQRRHQKVIEEAPSPL 246 (449)
T ss_pred ccEEEEEeccCCCcCCccceeeecCCCC
Confidence 999999999999999999 99999975
No 5
>KOG0369|consensus
Probab=99.97 E-value=7.6e-32 Score=221.74 Aligned_cols=102 Identities=34% Similarity=0.559 Sum_probs=98.9
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+++++.| |+++|++.|| +||++|++.++++++|+.|.++|.++||+..+|||+|++.|||||||+|+|++
T Consensus 171 tt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~ 250 (1176)
T KOG0369|consen 171 TTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKH 250 (1176)
T ss_pred ccHHHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccC
Confidence 67899999999999 9999999777 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
||++||+|||||+||||| +|-||+.
T Consensus 251 GNvvHLyERDCSvQRRHQKVVEiAPA~ 277 (1176)
T KOG0369|consen 251 GNVVHLYERDCSVQRRHQKVVEIAPAK 277 (1176)
T ss_pred CCEEEEeecccchhhhhcceeEecccc
Confidence 999999999999999999 9999975
No 6
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.97 E-value=1.8e-31 Score=195.56 Aligned_cols=102 Identities=29% Similarity=0.418 Sum_probs=93.8
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.++++++| ||+|||+.|| +||++|++.++|..+++.++++++.+||+++++||+|++++||+|||+++|++
T Consensus 25 ~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~ 104 (211)
T PF02786_consen 25 SSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGK 104 (211)
T ss_dssp SSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETT
T ss_pred CCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccc
Confidence 68899999999999 9999998766 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|||++|+|+| +|++|+.
T Consensus 105 gn~~~~~~~e~~~~~hs~dsi~~~P~~ 131 (211)
T PF02786_consen 105 GNVVHLGERECSEQRHSQDSIEEAPAQ 131 (211)
T ss_dssp SEEEEEEEEEEEEEETTEEEEEEES-S
T ss_pred cceeeeeeeccccccccccceeEeecc
Confidence 999999999999999999 9999984
No 7
>KOG0368|consensus
Probab=99.94 E-value=1.2e-27 Score=206.81 Aligned_cols=99 Identities=23% Similarity=0.394 Sum_probs=94.5
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++++.++.|| |+|||++-|| +|+|+|++.+||...|++++.+.+ .+++|+.|....+||+|||+|+|.+
T Consensus 226 ~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~EvP----GSPIFlMK~a~~ARHlEVQlLaDqY 301 (2196)
T KOG0368|consen 226 RNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEVP----GSPIFLMKLADQARHLEVQLLADQY 301 (2196)
T ss_pred CCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhhCC----CCceeeeecccCcceeeeehhhhhc
Confidence 56799999999999 9999998666 999999999999999999999977 8999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKSL 107 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~~ 107 (108)
||++.|++|||||||||| |||||.++
T Consensus 302 Gn~IsLfgRDCSiQRRhQKIIEEAPatI 329 (2196)
T KOG0368|consen 302 GNVISLFGRDCSIQRRHQKIIEEAPATI 329 (2196)
T ss_pred CCEeEeecccchHHHHHHHHHhhCCccc
Confidence 999999999999999999 99999986
No 8
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.93 E-value=1.8e-25 Score=180.74 Aligned_cols=102 Identities=27% Similarity=0.477 Sum_probs=96.2
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.++++++| |+||||+.|| +||++|++.++|..+++.+..++...|+++.+|||+||++++|+|+|+++|++
T Consensus 139 ~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~ 218 (499)
T PRK08654 139 EDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKH 218 (499)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCC
Confidence 46778888999999 9999998776 99999999999999999999999889999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++||||+||||| +|++|++
T Consensus 219 G~vv~l~~recsiqrr~qk~ie~~Pa~ 245 (499)
T PRK08654 219 GNVIHLGDRECSIQRRHQKLIEEAPSP 245 (499)
T ss_pred CCEEEEeeeccccccCccceEEECCCC
Confidence 999999999999999999 9999975
No 9
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.89 E-value=7.6e-23 Score=177.70 Aligned_cols=102 Identities=34% Similarity=0.585 Sum_probs=96.0
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++++| |+||||+.|| +||++|++.+||..+++.+..++.++||++.+|||+||++++|+|||+++|.+
T Consensus 139 ~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~ 218 (1143)
T TIGR01235 139 ETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKH 218 (1143)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCC
Confidence 46778888899999 9999998776 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+||+||||| +|++|++
T Consensus 219 G~vv~l~eRdcsvqrr~qk~ie~aPa~ 245 (1143)
T TIGR01235 219 GNVVHLFERDCSVQRRHQKVVEVAPAP 245 (1143)
T ss_pred CCEEEEEeccccccccCceEEEEeCCC
Confidence 999999999999999999 8999974
No 10
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.89 E-value=1.4e-22 Score=162.90 Aligned_cols=102 Identities=29% Similarity=0.570 Sum_probs=94.5
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++.+| |++|||+.|| +||++|++.++|..+++.+..++...|++..++||+||++++|+|+|+++|..
T Consensus 139 ~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~ 218 (478)
T PRK08463 139 ESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNY 218 (478)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCC
Confidence 35677888889999 9999998765 99999999999999999998888888999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++.+|+|++|+|+| +|++|++
T Consensus 219 g~v~~~~er~~s~~~~~~~~ie~~P~~ 245 (478)
T PRK08463 219 GNIIHLCERDCSIQRRHQKVIEIAPCP 245 (478)
T ss_pred CCEEEEeccCCccccccCceEEECCCC
Confidence 999999999999999999 9999974
No 11
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.89 E-value=1.3e-22 Score=162.75 Aligned_cols=101 Identities=31% Similarity=0.487 Sum_probs=94.3
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.++.+| |+||||+.|| +||++|++.+||..+++.+..++.+.|++..++||+|+.+++|+|+|+++|+.
T Consensus 138 ~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~ 217 (472)
T PRK07178 138 ADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSH 217 (472)
T ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECC
Confidence 45677888899999 9999998766 99999999999999999999998888988899999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPK 105 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~ 105 (108)
|+++++++|+|++|+|+| +|++|+
T Consensus 218 G~~v~~~er~~s~~~~~~~~~e~~P~ 243 (472)
T PRK07178 218 GNVVHLFERDCSIQRRNQKLIEIAPS 243 (472)
T ss_pred CCEEEEEccccceEecCcceEEECCC
Confidence 999999999999999999 899997
No 12
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.88 E-value=3.2e-22 Score=174.01 Aligned_cols=102 Identities=37% Similarity=0.600 Sum_probs=95.8
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++++| |+||||+.|| +||++|++.+||..+++.+.+++..+||++.+|+|+||++++|+++|+++|++
T Consensus 143 ~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~ 222 (1146)
T PRK12999 143 DDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKH 222 (1146)
T ss_pred CCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECC
Confidence 46788888999999 9999998776 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+||+||||| +|++|+.
T Consensus 223 G~vv~l~erdcsvqrr~qk~ie~aP~~ 249 (1146)
T PRK12999 223 GNVVHLYERDCSVQRRHQKVVEIAPAP 249 (1146)
T ss_pred CCEEEEEccccceeecCccEEEEcCCC
Confidence 999999999999999999 8999973
No 13
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.88 E-value=5.3e-22 Score=159.03 Aligned_cols=101 Identities=27% Similarity=0.409 Sum_probs=92.6
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.++++| |+||||+.|| +||++|++.++|..+++.+.+++..+|++..+|||+||++++|+++|+++|+.
T Consensus 142 ~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~ 221 (467)
T PRK12833 142 ASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE 221 (467)
T ss_pred CCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC
Confidence 46677888889999 9999998766 99999999999999999999988889999999999999988999999999876
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
+++++++|+|++|||+| +|++|++
T Consensus 222 -~~~~~~~~~~~~~r~~~ki~e~~p~~ 247 (467)
T PRK12833 222 -RVVHLFERECSLQRRRQKILEEAPSP 247 (467)
T ss_pred -cEEEEEEeecccccCCccEEEECCCC
Confidence 68999999999999999 8999874
No 14
>PRK05586 biotin carboxylase; Validated
Probab=99.85 E-value=1.1e-20 Score=150.35 Aligned_cols=102 Identities=31% Similarity=0.497 Sum_probs=93.5
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+.++.+| |++|||+.|| +|+++|++.+||..+++.+..++...|++..++||+||++++|+++++++|..
T Consensus 139 ~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~ 218 (447)
T PRK05586 139 ENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNY 218 (447)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCC
Confidence 45677778889999 9999998666 99999999999999999999988888988899999999988999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++++|++|+++| +|++|++
T Consensus 219 G~~~~~~~~~~~~~~~~~~~~~~~p~~ 245 (447)
T PRK05586 219 GNVVHLGERDCSLQRRNQKVLEEAPSP 245 (447)
T ss_pred CCEEEEeceecceEecccceEEEcCCC
Confidence 999999999999999998 8988863
No 15
>PRK08462 biotin carboxylase; Validated
Probab=99.82 E-value=1e-19 Score=144.40 Aligned_cols=102 Identities=31% Similarity=0.475 Sum_probs=92.4
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++...++++| |+||||+.|| +|+++|++.++|..++..+..++...|++..+++|+||++++|+++++++|..
T Consensus 141 ~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~ 220 (445)
T PRK08462 141 KSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKH 220 (445)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCC
Confidence 35677778889999 9999998765 99999999999999999988887777888889999999989999999999988
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++++|++|+++| +|++|+.
T Consensus 221 g~~~~~g~~~~~~~~~~~~~~~~~p~~ 247 (445)
T PRK08462 221 GNVIHVGERDCSLQRRHQKLIEESPAV 247 (445)
T ss_pred CCEEEEEeccccceecccceEEEcCCC
Confidence 999999999999999998 8889873
No 16
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.82 E-value=9.6e-20 Score=159.20 Aligned_cols=102 Identities=25% Similarity=0.395 Sum_probs=94.0
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+.++++| |+||||+.|| +|+++|++.++|..+++.+.+.+...|++..+|||+||++++|+++++++|+.
T Consensus 137 ~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~ 216 (1201)
T TIGR02712 137 SSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGK 216 (1201)
T ss_pred CCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCC
Confidence 45677888889999 9999998766 99999999999999999999888888988899999999988999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|||++|+|+| +|++|++
T Consensus 217 g~vv~lg~rd~s~qr~~~k~vee~Pap 243 (1201)
T TIGR02712 217 GKVVALGERDCSLQRRNQKVVEETPAP 243 (1201)
T ss_pred CeEEEeeEEEeeeEecCccEEEEcCCC
Confidence 999999999999999998 8999874
No 17
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.81 E-value=3.5e-19 Score=141.72 Aligned_cols=102 Identities=26% Similarity=0.418 Sum_probs=91.9
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++...++.+| |++|||+.|| +|+++|++.+||..+++.+..++...|++..++||+||++++|+++++++|..
T Consensus 139 ~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~ 218 (449)
T TIGR00514 139 EDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKY 218 (449)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCC
Confidence 35677888889999 9999998665 99999999999999999988877777878899999999989999999999998
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++++|++|+++| +|++|++
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~~~~p~~ 245 (449)
T TIGR00514 219 GNAIYLGERDCSIQRRHQKLLEEAPSP 245 (449)
T ss_pred CCEEEEeccccCceecccceEEECCCC
Confidence 999999999999999988 8888863
No 18
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.80 E-value=6.1e-19 Score=139.89 Aligned_cols=102 Identities=26% Similarity=0.420 Sum_probs=92.4
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.++.+| |++|||+.|| +|+++|++.+||..+++.++.++...|++..++||+||++++|+++++++|+.
T Consensus 139 ~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~ 218 (451)
T PRK08591 139 DDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGH 218 (451)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCC
Confidence 35677778889999 9999998666 99999999999999999998888777888899999999988999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++++|++|+++| +|++|++
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~~~~p~~ 245 (451)
T PRK08591 219 GNAIHLGERDCSLQRRHQKVLEEAPSP 245 (451)
T ss_pred CCEEEEecccccceecceeEEEECCCC
Confidence 999999999999999998 8888873
No 19
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.69 E-value=3.6e-16 Score=123.80 Aligned_cols=102 Identities=26% Similarity=0.494 Sum_probs=89.5
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++...++.+| |++|||+.|| +|+.+|++.++|..+++.+...+...|++..++||+||++++|++++++.+..
T Consensus 139 ~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~ 218 (450)
T PRK06111 139 EDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTH 218 (450)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCC
Confidence 45677778889999 9999998665 99999999999999999987766666778899999999988999999999988
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|++++++.++|+++++++ +|.+|++
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~~~~p~~ 245 (450)
T PRK06111 219 GNTVYLWERECSVQRRHQKVIEEAPSP 245 (450)
T ss_pred CCEEEEEeecccccccccceEEecCCC
Confidence 999999999999999887 7777764
No 20
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.56 E-value=1.6e-14 Score=105.22 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=58.2
Q ss_pred HHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCE
Q psy11786 10 LMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDV 84 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~ 84 (108)
.....+.+| |+||||+.+| +|+++|++.++|..+++.++++ +.++|||+||. +||++|.+++++...+
T Consensus 25 ~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~------~~~vlVEefI~-G~E~tv~vl~~~~~~~ 95 (203)
T PF07478_consen 25 IEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY------DDDVLVEEFIS-GREFTVGVLGNGEPRV 95 (203)
T ss_dssp HHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT------HSEEEEEE--S-SEEEEEEEEESSSTEE
T ss_pred HHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh------cceEEEEeeec-ccceEEEEEecCCccc
Confidence 356778999 9999999999 9999999999999999999876 78999999995 5999999999766444
No 21
>PLN02735 carbamoyl-phosphate synthase
Probab=99.50 E-value=1.2e-13 Score=120.53 Aligned_cols=86 Identities=23% Similarity=0.309 Sum_probs=74.1
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
+.+++.++++.+| ||||||+.|| +||++|++.++|..+++.++++ +++.+++||+||++++|++|++++|..|
T Consensus 725 s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D~~G 800 (1102)
T PLN02735 725 SEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDALADSEG 800 (1102)
T ss_pred CHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEECCCC
Confidence 5677888889999 9999998654 9999999999999999998876 3467899999998889999999999888
Q ss_pred CEE-------------Eecccccccc
Q psy11786 83 DVV-------------HLYDRDCPIY 95 (108)
Q Consensus 83 ~~~-------------~l~eR~Csiq 95 (108)
+++ |.+++.|++.
T Consensus 801 ~vv~~~i~e~~~~~gvhsGds~~~~P 826 (1102)
T PLN02735 801 NVVIGGIMEHIEQAGVHSGDSACSLP 826 (1102)
T ss_pred CEEEecceEeeeccCccCCCccEEec
Confidence 776 5677778775
No 22
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.42 E-value=1.2e-12 Score=102.64 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=56.8
Q ss_pred HhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCE
Q psy11786 13 FNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDV 84 (108)
Q Consensus 13 ~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~ 84 (108)
+...+| |+||||+.+| +|+++|++.++|..+++.++.+ ++.++||+||++ ||++|+|+++....+
T Consensus 166 ~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~G-rEi~v~Vlg~~~~~v 233 (364)
T PRK14570 166 IKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIEA-REIECSVIGNEQIKI 233 (364)
T ss_pred HHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcCC-EEEEEEEECCCCceE
Confidence 446799 9999999877 9999999999999999999875 778999999985 999999998754333
No 23
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.41 E-value=1.6e-12 Score=112.96 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=78.3
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+.++++| |++|||+.|+ .|+.+|++.+||..++..+...++ ..+++||+|+++++|+++.++.|..
T Consensus 149 ~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~----~~~vlVEe~I~G~~Eiev~v~rd~~ 224 (1050)
T TIGR01369 149 HSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASP----INQVLVEKSLAGWKEIEYEVMRDSN 224 (1050)
T ss_pred CCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCC----CCcEEEEEcccCceEEEEEEEEeCC
Confidence 35677778889999 9999998554 999999999999999988876532 3689999999999999999999999
Q ss_pred CCEEEeccccccccc------Cce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYA------EKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~------r~q--~e~~p~~ 106 (108)
|+++++ |+++. +.. +..+|+.
T Consensus 225 g~~~~~----~~~e~~~p~gvh~g~~i~v~Pa~ 253 (1050)
T TIGR01369 225 DNCITV----CNMENFDPMGVHTGDSIVVAPSQ 253 (1050)
T ss_pred CCEEEE----eeceeccCcceecCceEEEecCC
Confidence 999988 88876 333 6668873
No 24
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.39 E-value=4.8e-12 Score=104.44 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=76.2
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCC---ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAE---VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~g---G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++.+.++++| |+||||..| |+|+.+|++.+||..+++.+..+ +.+++||+||+..+|++|.++++..
T Consensus 144 ~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~------~~~vlvEefI~~~~EisV~v~r~~~ 217 (577)
T PLN02948 144 DLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGF------ERGLYAEKWAPFVKELAVMVARSRD 217 (577)
T ss_pred CHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCC------CCcEEEEecCCCCeEEEEEEEECCC
Confidence 4456667788999 999999854 39999999999999999987654 6789999999888999999998877
Q ss_pred CCEEEecccccccccCce--eccCCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKSL 107 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~~ 107 (108)
|++.+++- .+.+++.++ ...+|+.|
T Consensus 218 G~i~~~p~-~E~~~~~~~~~~~~~Pa~l 244 (577)
T PLN02948 218 GSTRCYPV-VETIHKDNICHVVEAPANV 244 (577)
T ss_pred CCEEEecC-cccEEECCeeEEEEECCCC
Confidence 87766543 456666665 45678755
No 25
>PLN02735 carbamoyl-phosphate synthase
Probab=99.39 E-value=2.7e-12 Score=112.14 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=75.7
Q ss_pred cHHHHHHHhhhcC--CeEEEcCC--CceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG--PICQRLVA--EVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g--Pv~vKp~~--gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++.+.++.+| |+||||+. ||.|+.+|+|.+||..+++.+...+. +++++||+|+.+++|+++++++|..
T Consensus 167 s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~----~~~VLVEe~I~G~kE~ev~Vl~D~~ 242 (1102)
T PLN02735 167 TLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASI----TSQVLVEKSLLGWKEYELEVMRDLA 242 (1102)
T ss_pred CHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCC----CCeEEEEEecCCCeEEEEEEEEcCC
Confidence 4567777888897 99999975 66999999999999999998765432 6789999999998999999999988
Q ss_pred CCEEEecccccccccC------ce--eccCCC
Q psy11786 82 GDVVHLYDRDCPIYAE------KI--SESHPK 105 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r------~q--~e~~p~ 105 (108)
|+++++ |+++.. .. +..+|+
T Consensus 243 g~~i~v----~~ie~~dp~gvh~G~s~~vaPa 270 (1102)
T PLN02735 243 DNVVII----CSIENIDPMGVHTGDSITVAPA 270 (1102)
T ss_pred CCEEEE----eeEEEEcCCccccCCEEEEEeC
Confidence 888877 777653 12 666787
No 26
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.32 E-value=7.8e-12 Score=96.47 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=56.0
Q ss_pred HHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 11 MIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
..+.+.+| |++|||+.|| +|+.+|++.++|..+++.++.+ ++.++||+||++ +|++|.++++
T Consensus 155 ~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~G-~E~~v~vl~~ 219 (333)
T PRK01966 155 AEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIKG-REIECAVLGN 219 (333)
T ss_pred HHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcCC-EEEEEEEECC
Confidence 44567899 9999999877 9999999999999999998876 788999999986 9999999986
No 27
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.32 E-value=1.1e-11 Score=105.09 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=59.8
Q ss_pred HHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCC
Q psy11786 11 MIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGD 83 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~ 83 (108)
.+..+.+| |+||||+.+| +|+++|++.+||..+++.++.+ +.++|||+|+.++||++|+++++..+.
T Consensus 603 ~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~ 672 (809)
T PRK14573 603 AHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSA 672 (809)
T ss_pred HHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCc
Confidence 34567899 9999999888 9999999999999999998865 788999999988899999999987653
No 28
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.32 E-value=1.3e-11 Score=95.69 Aligned_cols=64 Identities=8% Similarity=0.066 Sum_probs=55.7
Q ss_pred HHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 9 RLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
+.....+.+| |+||||+.|| +|+.+|++.++|..+++.++.. +..++||+||++ +|++|.++++
T Consensus 162 ~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~G-~E~sv~vi~~ 228 (347)
T PRK14572 162 KTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLSG-TEVSCGVLER 228 (347)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCccc-EEEEEEEEeC
Confidence 3334456799 9999999888 9999999999999999998764 778999999976 9999999975
No 29
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.29 E-value=1.3e-11 Score=95.51 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=54.7
Q ss_pred hhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 14 NSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 14 ~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+| |+||||+.|| +|+++|++.++|..+++.++++ +..++||+||++ +|++|.+++++.
T Consensus 161 ~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~sv~vl~~~~ 224 (343)
T PRK14568 161 AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVVG-SEVGCAVLGNGA 224 (343)
T ss_pred hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcCC-EEEEEEEEcCCC
Confidence 35799 9999999888 9999999999999999998776 788999999986 999999998754
No 30
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.26 E-value=4.7e-11 Score=104.03 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=69.8
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCC--ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAE--VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~g--G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
+.+++.+.++++| |++|||+.| |.|+.+|++.+||..+++.+...+. ..+++||+||++++|+++.++.|..|
T Consensus 151 s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~----~~~vlvEe~I~G~~Eisv~v~rd~~g 226 (1066)
T PRK05294 151 SMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSP----VTEVLIEESLLGWKEYEYEVMRDKND 226 (1066)
T ss_pred CHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCC----CCeEEEEEcccCceEEEEEEEEcCCC
Confidence 4567778889999 999999753 4999999999999999987765422 46799999999989999999999999
Q ss_pred CEEEeccccccccc
Q psy11786 83 DVVHLYDRDCPIYA 96 (108)
Q Consensus 83 ~~~~l~eR~Csiq~ 96 (108)
+++++ |+++.
T Consensus 227 ~~~~~----~~~e~ 236 (1066)
T PRK05294 227 NCIIV----CSIEN 236 (1066)
T ss_pred CEEEE----eeeee
Confidence 99888 65554
No 31
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.25 E-value=3.3e-11 Score=95.44 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=75.6
Q ss_pred ccHHHHHHHhhhcC-CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.+..+| |++|||+ .||.|..+++|.+||....+.....++ -.++++|+++.+++|+++.+++|.+
T Consensus 137 ~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~----~~~vl~eesi~G~ke~e~ev~rd~~ 212 (400)
T COG0458 137 HSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASP----VEEVLIEESIIGWKEFEYEVVRDGK 212 (400)
T ss_pred ccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCc----cccceeeeeecCceEEEEEEEEeCC
Confidence 46788899999999 9999995 888999999999999999999988755 5789999999999999999999999
Q ss_pred CCEEEeccccccccc
Q psy11786 82 GDVVHLYDRDCPIYA 96 (108)
Q Consensus 82 g~~~~l~eR~Csiq~ 96 (108)
+|++.. |++.+
T Consensus 213 ~n~ivv----c~men 223 (400)
T COG0458 213 DNCIVV----CNMEN 223 (400)
T ss_pred CCEEEE----EeCCc
Confidence 999888 76653
No 32
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.24 E-value=1.7e-10 Score=90.16 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=63.3
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc---eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV---VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG---~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++.+.++++| |++|||..|| +|+.++++.+||..+++.+ ++.++++|+||+..+|+.+.++.+..
T Consensus 123 s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~ 194 (372)
T PRK06019 123 SAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRD 194 (372)
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCC
Confidence 4566777788999 9999998653 9999999999999988765 25789999999977999999998888
Q ss_pred CCEEEec
Q psy11786 82 GDVVHLY 88 (108)
Q Consensus 82 g~~~~l~ 88 (108)
|++.+++
T Consensus 195 G~~~~~p 201 (372)
T PRK06019 195 GEVVFYP 201 (372)
T ss_pred CCEEEeC
Confidence 8877664
No 33
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.23 E-value=6.1e-11 Score=90.21 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=53.1
Q ss_pred HhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 13 FNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 13 ~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
..+.+| |+||||+.|| +|+++|++.++|..+++.++. .+.++||+||++ +|++|.++++..
T Consensus 125 ~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G-~E~tv~vl~~~~ 188 (296)
T PRK14569 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTG-KEITVAIVNDEV 188 (296)
T ss_pred hHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEccccc-EEEEEEEECCcC
Confidence 357799 9999999888 999999999999999988754 347999999976 999999998754
No 34
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.23 E-value=1.3e-10 Score=94.40 Aligned_cols=73 Identities=10% Similarity=0.066 Sum_probs=58.9
Q ss_pred cHHHHHHHhhh--cC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 6 AFSRLMIFNSI--HG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 6 ~~~~~~~~~~~--~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
+.+++...++. +| |+||||+.|| +|+++|++.++|..+++.++. +..++||+||.+ +|++|.++.+.
T Consensus 167 ~~eel~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~-------~~~viVEe~I~G-rEitVev~vd~ 238 (493)
T PRK06524 167 SYDELSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG-------QPEIKVMKRIRN-VEVCIEACVTR 238 (493)
T ss_pred CHHHHHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC-------CCCEEEEeccCc-EEEEEEEEEeC
Confidence 34455555554 99 9999999777 999999999999998877643 567999999974 99999999887
Q ss_pred CCCEEE
Q psy11786 81 YGDVVH 86 (108)
Q Consensus 81 ~g~~~~ 86 (108)
.|+++.
T Consensus 239 dG~Vv~ 244 (493)
T PRK06524 239 HGTVIG 244 (493)
T ss_pred CCCEEe
Confidence 777654
No 35
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.20 E-value=8.6e-11 Score=89.03 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=53.6
Q ss_pred hhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 14 NSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 14 ~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
++.+| |++|||+.|| .|+++|++.++|..+++.++.. +..++||+||++ +|++|.+++++.+
T Consensus 121 ~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~vlVEeyI~G-~E~sv~vl~~~~~ 185 (299)
T PRK14571 121 TSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR------YGSVIVQEYIPG-REMTVSILETEKG 185 (299)
T ss_pred hhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh------CCcEEEEccccc-eEEEEEEEcCCCC
Confidence 46789 9999998777 9999999999999999877653 567999999985 9999999987543
No 36
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.19 E-value=1.6e-10 Score=100.91 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=70.7
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCC--ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAE--VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~g--G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+.++.+| |++|||+.| |.|+.+|++.+||..+++.+...+. ..+++||+|+++++|+++.++.|..
T Consensus 150 ~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~----~~~vLVEe~I~G~~E~sv~v~rD~~ 225 (1068)
T PRK12815 150 TSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASP----IHQCLLEESIAGWKEIEYEVMRDRN 225 (1068)
T ss_pred CCHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCC----CCeEEEEEccCCCeEEEEEEEEcCC
Confidence 35677778889999 999999744 4999999999999999988776532 3579999999998999999999998
Q ss_pred CCEEEeccccccccc
Q psy11786 82 GDVVHLYDRDCPIYA 96 (108)
Q Consensus 82 g~~~~l~eR~Csiq~ 96 (108)
|+++++ |+++.
T Consensus 226 g~~~~~----~~~e~ 236 (1068)
T PRK12815 226 GNCITV----CNMEN 236 (1068)
T ss_pred CCEEEE----Eecee
Confidence 998887 66654
No 37
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.18 E-value=4.3e-11 Score=101.00 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=68.0
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEE-eCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC------------
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEW-LLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR------------ 68 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~i-V~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~------------ 68 (108)
.+.+++.+.++++| |++|||..|+ .||++ +++.++|..+++.+..+ +..++||+||++
T Consensus 236 ~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~------~~~viVEe~I~G~d~Rv~Vvgg~v 309 (727)
T PRK14016 236 TSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKE------SSDVIVERYIPGKDHRLLVVGGKL 309 (727)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHh------CCeEEEEEecCCceEEEEEECCEE
Confidence 35677888899999 9999998766 99998 99999999999998775 578999999987
Q ss_pred ---CeEEEEEEEecCCCCEEEecccccccccCc
Q psy11786 69 ---PRHIEVQILGDKYGDVVHLYDRDCPIYAEK 98 (108)
Q Consensus 69 ---~reievqvl~d~~g~~~~l~eR~Csiq~r~ 98 (108)
.+++..+++||+++++.+|.+|.-.=.||.
T Consensus 310 vaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg 342 (727)
T PRK14016 310 VAAARREPPHVIGDGKHTIRELIEIVNQDPRRG 342 (727)
T ss_pred EEEEEecCcEEecCCcccHHHHHHHhhcCcccc
Confidence 455555666666666666666544334443
No 38
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.17 E-value=2.9e-10 Score=91.06 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=66.7
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcC--CCcEEEeecCCCCeEEEEEEEec
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFG--KDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fg--d~~vlIE~~i~~~reievqvl~d 79 (108)
.+.+++.++++++| |++|||..++ +|+.++++.+++.+++..+... ..|| +..++||+||.+ +|+++.++.|
T Consensus 124 ~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~G-~E~Sv~~~~d 200 (434)
T PLN02257 124 TDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDG-EEASFFALVD 200 (434)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CEEEEEEEEC
Confidence 35567777888999 9999998544 9999999999999999887542 3455 367999999987 6999999888
Q ss_pred CCCCEEEecccccccccC
Q psy11786 80 KYGDVVHLYDRDCPIYAE 97 (108)
Q Consensus 80 ~~g~~~~l~eR~Csiq~r 97 (108)
+. +++++ ..+|.+
T Consensus 201 G~-~~~pl----~~~~dh 213 (434)
T PLN02257 201 GE-NAIPL----ESAQDH 213 (434)
T ss_pred CC-cEEEE----Eeeeec
Confidence 54 56666 356643
No 39
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.15 E-value=7e-11 Score=97.00 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=67.7
Q ss_pred cHHHHHHHhhhcCCeEEEcCCCc--eeeEE-eCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCC--eEE--------
Q psy11786 6 AFSRLMIFNSIHGPICQRLVAEV--VACEW-LLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRP--RHI-------- 72 (108)
Q Consensus 6 ~~~~~~~~~~~~gPv~vKp~~gG--~G~~i-V~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~--rei-------- 72 (108)
+.+++.++++++||++|||+.|| .|+++ +++.++|..+++.++.+ +..+|||+|+++. |++
T Consensus 320 ~~~~~~~~~~~~G~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~------~~~vlvEe~i~G~d~Rv~Vigg~vva 393 (547)
T TIGR03103 320 NGEAVEAFLAEHGAVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQF------CDRVLLERYVPGEDLRLVVIDFEVVA 393 (547)
T ss_pred CHHHHHHHHHHhCCEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhc------CCcEEEEEeccCCeEEEEEECCEEEE
Confidence 45667778888999999998776 99997 99999999999999876 5689999999874 555
Q ss_pred -----EEEEEecCCCCEEEeccccc
Q psy11786 73 -----EVQILGDKYGDVVHLYDRDC 92 (108)
Q Consensus 73 -----evqvl~d~~g~~~~l~eR~C 92 (108)
+.+|+||+++++.+|.+|.-
T Consensus 394 a~~R~~~~V~GDG~~ti~~Lie~~n 418 (547)
T TIGR03103 394 AAVRRPPEVIGDGRSSIRDLIEKQS 418 (547)
T ss_pred EEEecCcEEEeCCccCHHHHHHHHh
Confidence 77888998888888877653
No 40
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.14 E-value=3.6e-10 Score=85.31 Aligned_cols=68 Identities=26% Similarity=0.310 Sum_probs=56.9
Q ss_pred HHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 8 SRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 8 ~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
+++...++.+| |++|||..|| .|+.+|++.+++.++++.+... +..++||+||++ +|+++.++++...
T Consensus 123 ~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~E~~v~vi~~~~~ 193 (304)
T PRK01372 123 EDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKY------DDEVLVEKYIKG-RELTVAVLGGKAL 193 (304)
T ss_pred chHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEEcccCC-EEEEEEEECCCcc
Confidence 44566778899 9999998666 9999999999999998877543 578999999985 9999999987543
No 41
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.14 E-value=1.1e-09 Score=84.74 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=61.4
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCC---ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAE---VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~g---G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++.+.++.+| |++|||..| |+|+.+|++.++|..+++.. ++..+++|+||++.+|+++.++.+..
T Consensus 121 ~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~ 192 (352)
T TIGR01161 121 DEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSAD 192 (352)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCC
Confidence 4566777788999 999999864 39999999999999888763 24589999999877999999987777
Q ss_pred CCEEEec
Q psy11786 82 GDVVHLY 88 (108)
Q Consensus 82 g~~~~l~ 88 (108)
|++.+++
T Consensus 193 G~~~~~~ 199 (352)
T TIGR01161 193 GETAFYP 199 (352)
T ss_pred CCEEEEC
Confidence 8766653
No 42
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.13 E-value=3.9e-10 Score=80.59 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=73.7
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc---eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV---VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG---~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
++.+++.+.+.++| |+++|+..+| +|..++++.+|+..+++.. +..++++|+|++-.+|+.+.+..+.
T Consensus 15 ~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~~v~f~~EiSvivaR~~ 86 (172)
T PF02222_consen 15 DSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEEFVPFDREISVIVARDQ 86 (172)
T ss_dssp SSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE---ESEEEEEEEEEET
T ss_pred CCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEeccCCcEEEEEEEEEcC
Confidence 45678888889999 9999998888 9999999999999998886 2678999999999999999999999
Q ss_pred CCCEEEecccccccccCce-ecc-CCCCC
Q psy11786 81 YGDVVHLYDRDCPIYAEKI-SES-HPKSL 107 (108)
Q Consensus 81 ~g~~~~l~eR~Csiq~r~q-~e~-~p~~~ 107 (108)
.|++.+++-- ..+++.++ .+. +|+.+
T Consensus 87 ~G~~~~yp~~-en~~~~~il~~s~~Pa~i 114 (172)
T PF02222_consen 87 DGEIRFYPPV-ENVHRDGILHESIAPARI 114 (172)
T ss_dssp TSEEEEEEEE-EEEEETTEEEEEEESCSS
T ss_pred CCCEEEEcCc-eEEEECCEEEEEECCCCC
Confidence 9987776544 35666665 222 66654
No 43
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.13 E-value=3.7e-10 Score=88.72 Aligned_cols=71 Identities=6% Similarity=-0.069 Sum_probs=58.6
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++.+.++.+| |++|||+.++ +|+++|++.+++..+++.++... . +..++||+|+++ +|+++.++.++.
T Consensus 90 ~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~---~-~~~vlvEe~i~G-~E~sv~~~~~g~ 163 (379)
T PRK13790 90 RKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE---E-EGTVVFETFLEG-EEFSLMTFVNGD 163 (379)
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC---C-CCeEEEEEcccC-ceEEEEEEeeCC
Confidence 4567777788999 9999997544 99999999999999999876321 1 457999999987 899999998754
No 44
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.13 E-value=5.5e-10 Score=89.19 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=63.8
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCC--CcEEEeecCCCCeEEEEEEEec
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGK--DDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd--~~vlIE~~i~~~reievqvl~d 79 (108)
.+.+++.+.++++| |++|||..++ +|+.+|++.+|+..+++.++.. ..||+ ..++||+||++ +|+++.++.|
T Consensus 130 ~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~--~~~g~~~~~vlIEEfl~G-~E~Sv~~~~d 206 (426)
T PRK13789 130 TEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKD--KKFGQSGNQVVIEEFMEG-QEASIFAISD 206 (426)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh--ccccCCCCeEEEEECcCC-eEEEEEEEEC
Confidence 35677778888999 9999997444 9999999999999999998754 33554 47999999987 8999999987
Q ss_pred CCCCEEEe
Q psy11786 80 KYGDVVHL 87 (108)
Q Consensus 80 ~~g~~~~l 87 (108)
+. ++.++
T Consensus 207 g~-~~~~l 213 (426)
T PRK13789 207 GD-SYFLL 213 (426)
T ss_pred CC-EEEEc
Confidence 63 45445
No 45
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.12 E-value=7.9e-10 Score=85.79 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=62.0
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
+.+++...++.+| |++|||+.|+ +|+.+|++.++|..+++.+...+. ..+..++||+||++.+|+++.++.+..|
T Consensus 124 ~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g 201 (380)
T TIGR01142 124 SLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDG 201 (380)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCC
Confidence 4566667778999 9999998665 999999999999999998765321 1145799999998778999888876666
Q ss_pred CEEE
Q psy11786 83 DVVH 86 (108)
Q Consensus 83 ~~~~ 86 (108)
++..
T Consensus 202 ~~~~ 205 (380)
T TIGR01142 202 NTTF 205 (380)
T ss_pred CEEE
Confidence 6443
No 46
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.10 E-value=1.1e-09 Score=85.34 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=63.3
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+.++.+| |++|||+.|+ .|+.+|++.++|..+++.+...+.. .+..++||+||+...|+.+.++.+..
T Consensus 136 ~s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~~lvEefi~~~~E~sv~~~~~~~ 213 (395)
T PRK09288 136 DSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRG--GAGRVIVEEFIDFDYEITLLTVRAVD 213 (395)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccc--cCCCEEEEEecCCCEEEEEEEEEcCC
Confidence 35677777788999 9999998544 9999999999999999987653210 13679999999867999999998766
Q ss_pred CCEEEe
Q psy11786 82 GDVVHL 87 (108)
Q Consensus 82 g~~~~l 87 (108)
|...++
T Consensus 214 ~~~~~~ 219 (395)
T PRK09288 214 GGTHFC 219 (395)
T ss_pred CCEEEe
Confidence 554443
No 47
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.10 E-value=7.2e-10 Score=83.93 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=54.0
Q ss_pred HHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 12 IFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 12 ~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.....+| |++|||..|| .|+.+|++.++|..+++.++.+ +..++||+|+++ +|+++.+++++.
T Consensus 140 ~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~e~~v~vi~~~~ 205 (315)
T TIGR01205 140 QVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIKG-RELEVSILGNEE 205 (315)
T ss_pred HHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCCC-EEEEEEEECCCC
Confidence 3446799 9999998766 9999999999999999887754 678999999974 999999998543
No 48
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.07 E-value=1e-09 Score=95.69 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=64.3
Q ss_pred ccHHHHHHHhhhcC-CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++++| |++|||+ .||.||.+|++.++|..+++.+...+. +.+++||+||++++|+++.++.|+
T Consensus 691 ~s~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~----~~~vlVeefI~~G~E~~Vd~l~d~- 765 (1050)
T TIGR01369 691 TSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSP----EHPVLIDKYLEDAVEVDVDAVSDG- 765 (1050)
T ss_pred CCHHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCC----CCCEEEeecCCCCeEEEEEEEEeC-
Confidence 45678888889999 9999996 444999999999999999999876532 678999999987899999999885
Q ss_pred CCEEE
Q psy11786 82 GDVVH 86 (108)
Q Consensus 82 g~~~~ 86 (108)
|+++.
T Consensus 766 g~v~i 770 (1050)
T TIGR01369 766 EEVLI 770 (1050)
T ss_pred CEEEE
Confidence 44443
No 49
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.03 E-value=2.5e-09 Score=84.53 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=62.2
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcC--CCcEEEeecCCCCeEEEEEEEecC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFG--KDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fg--d~~vlIE~~i~~~reievqvl~d~ 80 (108)
+.+++.++++.+| |++|||..|+ +|+++|++.+++..+++.+.... .|| ...++||+|+++ +|+.+.++.|+
T Consensus 125 ~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~vlvEe~i~G-~E~sv~~~~~g 201 (420)
T PRK00885 125 DAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGN--KFGDAGARVVIEEFLDG-EEASFFAFVDG 201 (420)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcc--cccCCCCeEEEEEccCC-cEEEEEEEECC
Confidence 4567777888999 9999997443 99999999999999999887532 233 257999999986 89999999875
Q ss_pred CCCEEEe
Q psy11786 81 YGDVVHL 87 (108)
Q Consensus 81 ~g~~~~l 87 (108)
. ++..+
T Consensus 202 ~-~~~~~ 207 (420)
T PRK00885 202 E-NVLPL 207 (420)
T ss_pred C-ceEec
Confidence 4 45444
No 50
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.02 E-value=1.9e-09 Score=94.17 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=61.6
Q ss_pred cHHHHHHHhhhcC-CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++.++++.+| |++|||+ .||.||.+|++.++|..+++.+...+. +.+++||+||++++|+++.++.|+.
T Consensus 692 s~ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~----~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 692 SVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSP----DHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred CHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCC----CCcEEEEecCCCCEEEEEEEEecCC
Confidence 5577778889999 9999996 444999999999999999998876532 6789999999987799999998765
No 51
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.00 E-value=3e-09 Score=73.84 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=60.2
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.+..+| |++|||..|+ .|+.++++.++|...++....... .+...+++|+||++ .++++.++.+ .
T Consensus 26 ~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~--~~~~~~ivqe~i~g-~e~~~~~~~~-~ 101 (184)
T PF13535_consen 26 DSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP--LGNGPVIVQEYIPG-DEYSVDGVVD-D 101 (184)
T ss_dssp CSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS---HSSSEEEEE---S-EEEEEEEEEE-T
T ss_pred CCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--cCCccEEEEEeeee-eeEEEEEEEE-c
Confidence 35677888889999 9999997554 999999999999999999877532 11467999999986 9999998876 6
Q ss_pred CCEEEec
Q psy11786 82 GDVVHLY 88 (108)
Q Consensus 82 g~~~~l~ 88 (108)
|.++.+.
T Consensus 102 G~~~~~~ 108 (184)
T PF13535_consen 102 GEVVFAG 108 (184)
T ss_dssp TEEEEEE
T ss_pred ceEEEEE
Confidence 7775554
No 52
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.96 E-value=6.3e-09 Score=82.06 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=62.6
Q ss_pred ccHHHHHHHhhhcC-C-eEEEcCCC--ceeeEEeCCHHHHHHHHHHHhhhHhhhcC--CCcEEEeecCCCCeEEEEEEEe
Q psy11786 5 KAFSRLMIFNSIHG-P-ICQRLVAE--VVACEWLLTKDAIEENFKRAGPKLWLFFG--KDDMLVEKDIGRPRHIEVQILG 78 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-P-v~vKp~~g--G~G~~iV~~~~el~~a~~~a~~~a~~~fg--d~~vlIE~~i~~~reievqvl~ 78 (108)
.+.+++.++++.+| | ++|||..| |+|++++++.+++..+++.+.... || +..++||+|+++ .|+++.++.
T Consensus 126 ~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~---~g~~~~~~lvEe~i~G-~E~sv~~~~ 201 (423)
T TIGR00877 126 TDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQK---FGDAGERVVIEEFLDG-EEVSLLAFV 201 (423)
T ss_pred CCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHh---cCCCCCeEEEEECccC-ceEEEEEEE
Confidence 35677788889999 9 99999743 399999999999999999887653 44 357999999987 899999998
Q ss_pred cCCCCEEEe
Q psy11786 79 DKYGDVVHL 87 (108)
Q Consensus 79 d~~g~~~~l 87 (108)
|+. .+.++
T Consensus 202 dg~-~~~~~ 209 (423)
T TIGR00877 202 DGK-TVIPM 209 (423)
T ss_pred cCC-eEEec
Confidence 753 44443
No 53
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=98.93 E-value=6e-09 Score=88.27 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=53.7
Q ss_pred HHHHHHhhhc-C-CeEEEcCCCc--eeeEEeCC---HHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 8 SRLMIFNSIH-G-PICQRLVAEV--VACEWLLT---KDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 8 ~~~~~~~~~~-g-Pv~vKp~~gG--~G~~iV~~---~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
+++......+ | ||+|||+.|| +|++++.+ .+++.+|++.|+++ +..++||+||++ +|+.|.|+++
T Consensus 500 ~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~------~~~VLVEefI~G-~EyRv~VIg~ 571 (737)
T TIGR01435 500 ALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSE------DSSVIIEEFLPG-TEYRFFVLND 571 (737)
T ss_pred HHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhc------CCeEEEEecccC-CEEEEEEECC
Confidence 4444455566 7 9999998777 99999876 78999999888775 678999999975 9999999975
No 54
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.91 E-value=1.3e-08 Score=82.76 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=58.3
Q ss_pred ccHHHHHHHhhhcCCeEEEcCCC--ceeeEEeCCHH-----HHHHHHHHHhhhHh---hhcCC--CcEEEeecCCCCeEE
Q psy11786 5 KAFSRLMIFNSIHGPICQRLVAE--VVACEWLLTKD-----AIEENFKRAGPKLW---LFFGK--DDMLVEKDIGRPRHI 72 (108)
Q Consensus 5 ~~~~~~~~~~~~~gPv~vKp~~g--G~G~~iV~~~~-----el~~a~~~a~~~a~---~~fgd--~~vlIE~~i~~~rei 72 (108)
.+.+++.+.++.++|++|||+.+ |+||++|++.+ ++.+++..+...+. ..||+ ..++||+||++ .|+
T Consensus 132 ~~~~ea~~~~~~~~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E~ 210 (486)
T PRK05784 132 YDVEEAAKFIEYGGSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VEY 210 (486)
T ss_pred CCHHHHHHHHhhcCCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eEE
Confidence 34566766665555999999643 49999999987 45577755555432 45664 57999999986 899
Q ss_pred EEEEEecCCCCEEEe
Q psy11786 73 EVQILGDKYGDVVHL 87 (108)
Q Consensus 73 evqvl~d~~g~~~~l 87 (108)
+|+++.|+. .++++
T Consensus 211 SV~al~dG~-~~~~l 224 (486)
T PRK05784 211 TLQVLTDGE-TVIPL 224 (486)
T ss_pred EEEEEECCC-eEEEe
Confidence 999998754 44444
No 55
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.91 E-value=8.4e-09 Score=90.23 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=59.8
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCC--CceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVA--EVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~--gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++.+| |++|||+. ||.||.+|++.++|..+++.+.. .+.+++||+||++ +|++++++.|+.
T Consensus 692 ~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s------~~~~vlIeefI~G-~E~~Vd~i~dg~ 764 (1068)
T PRK12815 692 TDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENAS------QLYPILIDQFIDG-KEYEVDAISDGE 764 (1068)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhc------CCCCEEEEEeecC-ceEEEEEEEcCC
Confidence 35678888899999 99999964 44999999999999999998722 2678999999965 899999999865
Q ss_pred C
Q psy11786 82 G 82 (108)
Q Consensus 82 g 82 (108)
.
T Consensus 765 ~ 765 (1068)
T PRK12815 765 D 765 (1068)
T ss_pred c
Confidence 3
No 56
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.91 E-value=4.6e-09 Score=81.40 Aligned_cols=64 Identities=25% Similarity=0.293 Sum_probs=58.4
Q ss_pred HHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 11 MIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+....+| |+||||+..| +|+.+|++.+++..+++.++.+ |.++++|+|+. .|||||.++++..
T Consensus 135 e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 135 EEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred HHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh------CCceeeccCCC-cceEEEEecCCcc
Confidence 35567899 9999999999 9999999999999999999998 99999999998 6999999998744
No 57
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.88 E-value=1.4e-08 Score=77.22 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=57.5
Q ss_pred HHHHHHHhhhc-C-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC--CCeEEEEEEEecC
Q psy11786 7 FSRLMIFNSIH-G-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG--RPRHIEVQILGDK 80 (108)
Q Consensus 7 ~~~~~~~~~~~-g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~--~~reievqvl~d~ 80 (108)
.+++..+++.+ | |++|||..|| .|+.++++.+++..+++..... +..++||+||+ .+++++|.++++
T Consensus 123 ~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g~d~rv~vig~- 195 (300)
T PRK10446 123 PDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQGCDIRCLVVGD- 195 (300)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCCceEEEEEECC-
Confidence 34555566666 7 9999998777 9999999999998888776544 56799999996 359999999974
Q ss_pred CCCEEEeccc
Q psy11786 81 YGDVVHLYDR 90 (108)
Q Consensus 81 ~g~~~~l~eR 90 (108)
+++..-+|
T Consensus 196 --~~~~~~~r 203 (300)
T PRK10446 196 --EVVAAIER 203 (300)
T ss_pred --EEEEEEEE
Confidence 34444343
No 58
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.86 E-value=2.7e-08 Score=72.51 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=69.7
Q ss_pred ccHHHHHHHhhhcC-Ce-EEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcC--CCcEEEeecCCCCeEEEEEEEe
Q psy11786 5 KAFSRLMIFNSIHG-PI-CQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFG--KDDMLVEKDIGRPRHIEVQILG 78 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv-~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fg--d~~vlIE~~i~~~reievqvl~ 78 (108)
.+.+++.++.+..+ |+ +|||. ++|+|+.++.+.++..++++..+.. ..|| .+.++||+|+.+ .|+.+..+.
T Consensus 24 ~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~fg~~~~~vvIEE~l~G-~E~S~~a~~ 100 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKFGDAGSKVVIEEFLEG-EEVSLFALT 100 (194)
T ss_dssp SSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STTCCCGSSEEEEE---S-EEEEEEEEE
T ss_pred CCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--cccCCCCCcEEEEeccCC-eEEEEEEEE
Confidence 46789999999999 99 99995 7779999999999999999998864 4576 468999999976 999999999
Q ss_pred cCCCCEEEecccccccccCce
Q psy11786 79 DKYGDVVHLYDRDCPIYAEKI 99 (108)
Q Consensus 79 d~~g~~~~l~eR~Csiq~r~q 99 (108)
|+. +++.| ...|.+.+
T Consensus 101 dG~-~~~~l----p~aqD~Kr 116 (194)
T PF01071_consen 101 DGK-NFVPL----PPAQDHKR 116 (194)
T ss_dssp ESS-EEEEE----EEBEEEEE
T ss_pred cCC-eEEEC----cchhcccc
Confidence 876 56677 45565544
No 59
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.85 E-value=2.2e-08 Score=76.01 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=58.8
Q ss_pred cHHHHHH--HhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 6 AFSRLMI--FNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 6 ~~~~~~~--~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
+.+++.. ...++| |+++||..|+ .|+.++++.+++..++... ..++||+||.+ +|+.+.++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~G-~e~~v~~~~~~ 202 (326)
T PRK12767 134 SLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIEG-QEYTVDVLCDL 202 (326)
T ss_pred CHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC----------CCeEEEeccCC-ceEEEEEEEcC
Confidence 3445544 457789 9999997554 9999999999998887642 37899999965 99999999886
Q ss_pred CCCEEEecccc
Q psy11786 81 YGDVVHLYDRD 91 (108)
Q Consensus 81 ~g~~~~l~eR~ 91 (108)
.|+++++..++
T Consensus 203 ~G~~~~~~~~~ 213 (326)
T PRK12767 203 NGEVISIVPRK 213 (326)
T ss_pred CCCEEEEEEee
Confidence 78887765444
No 60
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.82 E-value=2.5e-08 Score=85.73 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=63.2
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEE-eCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEW-LLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~i-V~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
.+.+++.+.++++| |++|||..|+ .|+.+ +++.++|..+++.++.. +..++||+|+++ +++.+-|+++
T Consensus 235 ~s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~------~~~vlVEefI~G-~e~rvlVv~~- 306 (864)
T TIGR02068 235 QSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE------SSGVIVERFITG-RDHRLLVVGG- 306 (864)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh------CCcEEEEEeccC-CEEEEEEECC-
Confidence 35677888889999 9999998655 99998 99999999999998775 578999999976 9999988864
Q ss_pred CCCEEEecccc
Q psy11786 81 YGDVVHLYDRD 91 (108)
Q Consensus 81 ~g~~~~l~eR~ 91 (108)
+++..-.|.
T Consensus 307 --~vvaa~~R~ 315 (864)
T TIGR02068 307 --KVVAVAERV 315 (864)
T ss_pred --EEEEEEEec
Confidence 455554443
No 61
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.77 E-value=3.6e-08 Score=83.78 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=53.4
Q ss_pred cHHHHHHHhhh-cC-CeEEEcCCCc--eeeEEe---CCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEe
Q psy11786 6 AFSRLMIFNSI-HG-PICQRLVAEV--VACEWL---LTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILG 78 (108)
Q Consensus 6 ~~~~~~~~~~~-~g-Pv~vKp~~gG--~G~~iV---~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~ 78 (108)
+.+++....+. +| |++|||+.|+ +|++++ ++.+++.++++.++++ +..++||+||++ +|+.|.|++
T Consensus 511 ~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~------~~~vlVEEfI~G-~E~Rv~Vig 583 (752)
T PRK02471 511 SLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFRE------DSSVLVEEFIVG-TEYRFFVLD 583 (752)
T ss_pred CHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhc------CCcEEEEecccC-CEEEEEEEC
Confidence 34555555555 58 9999998776 999986 5689999999888765 678999999975 999999995
Q ss_pred c
Q psy11786 79 D 79 (108)
Q Consensus 79 d 79 (108)
+
T Consensus 584 g 584 (752)
T PRK02471 584 G 584 (752)
T ss_pred C
Confidence 4
No 62
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.76 E-value=9.7e-08 Score=76.33 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=71.1
Q ss_pred ccHHHHHHHhhhcC-CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCC--cEEEeecCCCCeEEEEEEEec
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKD--DMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~--~vlIE~~i~~~reievqvl~d 79 (108)
++.+++.+..++.| |++|||. ++|+|+.++.+.++..+++...... ..||+. +|+||.|+++ -|++++.+.|
T Consensus 125 ~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~G-eE~S~~a~~D 201 (428)
T COG0151 125 TDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLDG-EEFSLQAFVD 201 (428)
T ss_pred CCHHHHHHHHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhh--ccccCCCCcEEEEecccc-eEEEEEEEEc
Confidence 46789999999999 9999994 8889999999988888887776553 356654 4999999986 9999999999
Q ss_pred CCCCEEEecccccccccCce
Q psy11786 80 KYGDVVHLYDRDCPIYAEKI 99 (108)
Q Consensus 80 ~~g~~~~l~eR~Csiq~r~q 99 (108)
++ +++.++ +.|.|..
T Consensus 202 G~-~v~p~p----~aQDhKr 216 (428)
T COG0151 202 GK-TVIPMP----TAQDHKR 216 (428)
T ss_pred CC-eEEECc----ccccccc
Confidence 86 677773 4676654
No 63
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.75 E-value=5.9e-08 Score=83.48 Aligned_cols=70 Identities=10% Similarity=-0.020 Sum_probs=57.8
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++.+.++.+| |++|||+.|+ .|+++|++.+||..+++.+... +...++||+||++ .|+.+.++.+..
T Consensus 130 ~~~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G-~E~sVe~i~~~g 202 (887)
T PRK02186 130 LRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEG-DEYSVETLTVAR 202 (887)
T ss_pred CHHHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccC-CcEEEEEEEECC
Confidence 4466777778999 9999997555 9999999999999999877542 2578999999987 899999887653
No 64
>KOG0370|consensus
Probab=98.72 E-value=4.6e-09 Score=90.35 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=74.2
Q ss_pred ccHHHHHHHhhhcC-CeEEEc--CCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRL--VAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp--~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+++++++.++++| ||+|++ +.||.|-..+.|.++|..-...++.. ..+++|||.+.+++|+|+.|+.|..
T Consensus 520 ~sie~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~QilvekSlkGwkevEyevvrDa~ 593 (1435)
T KOG0370|consen 520 STIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQILVEKSLKGWKEVEYEVVRDAY 593 (1435)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc------CceeeehhhhccccceEEEEEeccc
Confidence 57899999999999 999999 58999999999999999998888887 6789999999999999999999999
Q ss_pred CCEEEecccccccc
Q psy11786 82 GDVVHLYDRDCPIY 95 (108)
Q Consensus 82 g~~~~l~eR~Csiq 95 (108)
+||++. |.+.
T Consensus 594 ~nciTv----cnme 603 (1435)
T KOG0370|consen 594 DNCITV----CNME 603 (1435)
T ss_pred cchhhh----cCCc
Confidence 999887 6654
No 65
>PRK07206 hypothetical protein; Provisional
Probab=98.69 E-value=1.8e-07 Score=73.48 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=57.5
Q ss_pred cHHHHHHHhhh---cC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcC--CCcEEEeecCCCCeEEEEEEE
Q psy11786 6 AFSRLMIFNSI---HG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFG--KDDMLVEKDIGRPRHIEVQIL 77 (108)
Q Consensus 6 ~~~~~~~~~~~---~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fg--d~~vlIE~~i~~~reievqvl 77 (108)
+.+++.+.++. ++ |++|||+.|+ .|+++|++.+||..+++.+.... ..++ ...++||+||++ .|+.+.++
T Consensus 131 ~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~-~~~~~~~~~~lvEe~i~G-~E~sv~~~ 208 (416)
T PRK07206 131 DWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKA-NKLGLVNETVLVQEYLIG-TEYVVNFV 208 (416)
T ss_pred CHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhcc-ccCCCCCCeEEEEEcccc-EEEEEEEE
Confidence 34566566666 36 9999997654 99999999999999999876532 1122 357999999986 89999988
Q ss_pred ecCCCCEEE
Q psy11786 78 GDKYGDVVH 86 (108)
Q Consensus 78 ~d~~g~~~~ 86 (108)
.. .|++++
T Consensus 209 ~~-~G~~~~ 216 (416)
T PRK07206 209 SL-DGNHLV 216 (416)
T ss_pred EE-CCEEEE
Confidence 63 345433
No 66
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.65 E-value=1.9e-07 Score=74.84 Aligned_cols=77 Identities=10% Similarity=0.040 Sum_probs=54.6
Q ss_pred cHHHHHHHhhhcC-CeEEEcC--CCceeeEEeCCH-HHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLV--AEVVACEWLLTK-DAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~--~gG~G~~iV~~~-~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++...+.++| |++|||+ +||+||.++++. +++.+++..+...- +. +..++||+|+++ .|+++.++.|+.
T Consensus 129 ~~~e~~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~~-~~~viIEEfl~G-~E~Svd~~~dg~ 204 (435)
T PRK06395 129 SEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--DR-DGVVLIEKKMTG-EEFSLQAFSDGK 204 (435)
T ss_pred ChHHHHHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh--CC-CCcEEEEeecCC-ceEEEEEEEcCC
Confidence 3456666677889 9999995 566999999753 34556565554421 11 467999999986 799999998764
Q ss_pred CCEEEe
Q psy11786 82 GDVVHL 87 (108)
Q Consensus 82 g~~~~l 87 (108)
.++.+
T Consensus 205 -~~~~l 209 (435)
T PRK06395 205 -HLSFM 209 (435)
T ss_pred -eEEEe
Confidence 45555
No 67
>KOG0370|consensus
Probab=98.63 E-value=2.9e-08 Score=85.58 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=68.5
Q ss_pred ccHHHHHHHhhhcC-CeEEEc--CCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRL--VAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp--~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++++++.++++..| |++|+| +..|-.|.+|++.++|...++.|...++ |+++.|-|||++++||+++.++ ..
T Consensus 1055 t~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~----dhPVVisKfie~AkEidvDAVa-~~ 1129 (1435)
T KOG0370|consen 1055 TSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSP----DHPVVISKFIEGAKEIDVDAVA-SD 1129 (1435)
T ss_pred ccHHHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCC----CCCEEhHHhhcccceechhhhc-cC
Confidence 67899999999999 999999 5889999999999999999999999988 9999999999999999999875 33
Q ss_pred CCE
Q psy11786 82 GDV 84 (108)
Q Consensus 82 g~~ 84 (108)
|++
T Consensus 1130 G~~ 1132 (1435)
T KOG0370|consen 1130 GKV 1132 (1435)
T ss_pred CeE
Confidence 554
No 68
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.54 E-value=5.9e-07 Score=66.91 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=53.3
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC-CeEEEEEEEec
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR-PRHIEVQILGD 79 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~-~reievqvl~d 79 (108)
+.+++....+.+| |++|||..|+ .|+.++++.+++..+++...... ...+..+++++||++ .+++.+-++++
T Consensus 110 ~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~--~~~~~~~ivQefI~~~~~d~~v~vig~ 185 (280)
T TIGR02144 110 DREAALKLAEALGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLG--GSQHKLFYIQEYINKPGRDIRVFVIGD 185 (280)
T ss_pred CHHHHHHHHHHcCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhc--CCcCCeEEEEcccCCCCCceEEEEECC
Confidence 3455666677899 9999997654 89999999999988775432211 011457999999986 58999999865
No 69
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.54 E-value=7.4e-07 Score=65.77 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=52.3
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCC--eEEEEEEEe
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRP--RHIEVQILG 78 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~--reievqvl~ 78 (108)
+.+++.+..+++| |++|||..|+ .|+.++++.+++..+++....... ....+++|+||++. +++.+-+++
T Consensus 111 ~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~---~~~~~lvQe~I~~~~~~~~rv~v~~ 185 (277)
T TIGR00768 111 SPEEALKLIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNG---PQNLFYVQEYIKKPGGRDIRVFVVG 185 (277)
T ss_pred CHHHHHHHHHhcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcc---cCCcEEEEeeecCCCCceEEEEEEC
Confidence 3456667778999 9999998655 999999999999887766443311 12479999999864 467777664
No 70
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.50 E-value=7.9e-07 Score=69.35 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=56.9
Q ss_pred ccHHHHHHHhhhcC-CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEE
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQIL 77 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl 77 (108)
++.++....++.+| |++|||+ +.|+|.++|++.+++++|++.|..-+. -+..++++|.|++- ++|+.+|
T Consensus 136 ~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R--~~~~RVIVE~fv~f--d~EiTlL 207 (394)
T COG0027 136 DSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGR--GGSGRVIVEEFVKF--DFEITLL 207 (394)
T ss_pred ccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCC--CCCCcEEEEEEecc--eEEEEEE
Confidence 56788888999999 9999995 667999999999999999999887654 33578999999965 5555554
No 71
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.48 E-value=1.5e-06 Score=68.43 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=63.8
Q ss_pred ccHHHHHHHhhhcC--CeEEEcC--CCc----eeeEEeCCHHHHHHHHHHHhhhHhhh--c---CC--CcEEEeecCCCC
Q psy11786 5 KAFSRLMIFNSIHG--PICQRLV--AEV----VACEWLLTKDAIEENFKRAGPKLWLF--F---GK--DDMLVEKDIGRP 69 (108)
Q Consensus 5 ~~~~~~~~~~~~~g--Pv~vKp~--~gG----~G~~iV~~~~el~~a~~~a~~~a~~~--f---gd--~~vlIE~~i~~~ 69 (108)
++.+++.+.++++| |++|||. .|| .|+.++++.+++..+++..+...... + |. ..++||+++...
T Consensus 26 ~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g 105 (386)
T TIGR01016 26 TSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDID 105 (386)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECccCC
Confidence 35677888889998 9999997 455 49999999999999998876421100 1 11 369999999878
Q ss_pred eEEEEEEEecC--CCCEEEec
Q psy11786 70 RHIEVQILGDK--YGDVVHLY 88 (108)
Q Consensus 70 reievqvl~d~--~g~~~~l~ 88 (108)
+|+.+.++.|. .+.++.++
T Consensus 106 ~E~~v~i~~d~~~~~pvi~~~ 126 (386)
T TIGR01016 106 KEYYLSIVIDRSARCPVIMAS 126 (386)
T ss_pred ceEEEEEEEcCCCCceEEEEE
Confidence 99999999985 46666654
No 72
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.37 E-value=1.2e-06 Score=62.67 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=42.0
Q ss_pred cHHHHHHHhhhc-C-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCC--eEEEEEEEec
Q psy11786 6 AFSRLMIFNSIH-G-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRP--RHIEVQILGD 79 (108)
Q Consensus 6 ~~~~~~~~~~~~-g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~--reievqvl~d 79 (108)
+.+++..+.+.+ + |+++||..|+ .|+.++++.+++...+...... ...+++++||+.. +++.|-|+++
T Consensus 26 ~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~------~~~~~~Q~fI~~~~g~d~Rv~Vig~ 99 (190)
T PF08443_consen 26 SPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL------ENPILVQEFIPKDGGRDLRVYVIGG 99 (190)
T ss_dssp SHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH-----------TTT-EEEE----SS---EEEEEETT
T ss_pred CHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc------cCcceEeccccCCCCcEEEEEEECC
Confidence 456777788888 8 9999998765 8999999999999888765544 5778999999875 4899999975
No 73
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.32 E-value=4.3e-06 Score=65.92 Aligned_cols=63 Identities=5% Similarity=-0.025 Sum_probs=48.7
Q ss_pred hhcC-CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 15 SIHG-PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 15 ~~~g-Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
..++ |++|||. .||+|+.++++.+|+.++++.+......+. ...++||+||.+ .|+.++.+-.
T Consensus 146 ~~i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~G-~e~sv~~f~s 211 (358)
T PRK13278 146 EDIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVVG-VPYYFHYFYS 211 (358)
T ss_pred HHcCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCCC-cEEEEEEEEe
Confidence 4578 9999994 344999999999999999988754211111 467999999986 7999998853
No 74
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.27 E-value=7.5e-06 Score=64.56 Aligned_cols=83 Identities=14% Similarity=0.043 Sum_probs=64.2
Q ss_pred ccHHHHHHHhhhc-C-CeEEEcC--CCce----eeEEeCCHHHHHHHHHHHhhhHh--hh---cCC--CcEEEeecCCCC
Q psy11786 5 KAFSRLMIFNSIH-G-PICQRLV--AEVV----ACEWLLTKDAIEENFKRAGPKLW--LF---FGK--DDMLVEKDIGRP 69 (108)
Q Consensus 5 ~~~~~~~~~~~~~-g-Pv~vKp~--~gG~----G~~iV~~~~el~~a~~~a~~~a~--~~---fgd--~~vlIE~~i~~~ 69 (108)
.+.+++.+.++++ | |++|||. .||+ |++++++.+++..+++....... .. .|. ..++||++++..
T Consensus 26 ~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~ 105 (388)
T PRK00696 26 TTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIA 105 (388)
T ss_pred CCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEeccCCC
Confidence 4678899999999 9 9999995 3553 99999999999999988764311 00 111 258999999878
Q ss_pred eEEEEEEEecCC-CCEEEe
Q psy11786 70 RHIEVQILGDKY-GDVVHL 87 (108)
Q Consensus 70 reievqvl~d~~-g~~~~l 87 (108)
+|+.+.+..|.. |+++.+
T Consensus 106 ~E~~vg~~~D~~fgpvv~~ 124 (388)
T PRK00696 106 KEYYLSIVLDRATRRVVFM 124 (388)
T ss_pred ceEEEEEEEcCCCCceEEE
Confidence 999999999854 777654
No 75
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.08 E-value=2.5e-05 Score=61.86 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=69.4
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc---eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV---VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG---~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
++.+++...++++| |.++|...|| +|..++++.+++......... ....++|+|++--||+.+=+..+.
T Consensus 121 ~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~ 193 (375)
T COG0026 121 DSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSN 193 (375)
T ss_pred CCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcC
Confidence 45678888899999 9999999999 999999999998876555433 233499999988788877777777
Q ss_pred CCCEEEecccccccccCce--eccCCCCC
Q psy11786 81 YGDVVHLYDRDCPIYAEKI--SESHPKSL 107 (108)
Q Consensus 81 ~g~~~~l~eR~Csiq~r~q--~e~~p~~~ 107 (108)
.|++.+++--+ .+++.+. .=.||+.+
T Consensus 194 ~G~~~~yP~~e-N~h~~gIl~~siaPa~i 221 (375)
T COG0026 194 DGEVAFYPVAE-NVHRNGILRTSIAPARI 221 (375)
T ss_pred CCCEEEecccc-eeeecCEEEEEEecCcC
Confidence 78877765433 3444443 22366543
No 76
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.06 E-value=4.6e-05 Score=56.53 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=60.5
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc-------eeeEE-eCCHHHHHHHHHHHhhhHhhhcC---CCcEEEeecCC-CCeE
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV-------VACEW-LLTKDAIEENFKRAGPKLWLFFG---KDDMLVEKDIG-RPRH 71 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG-------~G~~i-V~~~~el~~a~~~a~~~a~~~fg---d~~vlIE~~i~-~~re 71 (108)
.+.+++.+.++++| ||.+|..+-+ -|+.. +++.+++..+++..........- ...++|++.+. .+.|
T Consensus 33 ~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~E 112 (222)
T PF13549_consen 33 TSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVAAHHPGARIDGVLVQEMAPSGGRE 112 (222)
T ss_dssp SSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHHHH-TT----EEEEEE------EE
T ss_pred CCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEE
Confidence 56789999999999 9999997665 37777 78999999999998877654222 25799999998 7799
Q ss_pred EEEEEEec-CCCCEEEecc
Q psy11786 72 IEVQILGD-KYGDVVHLYD 89 (108)
Q Consensus 72 ievqvl~d-~~g~~~~l~e 89 (108)
+-+++..| ..|+++.||-
T Consensus 113 l~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 113 LIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp EEEEEEEETTTEEEEEEEE
T ss_pred EEEEEEECCCCCCEEEEcC
Confidence 99999988 4588888763
No 77
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.97 E-value=4.1e-05 Score=60.62 Aligned_cols=72 Identities=7% Similarity=-0.089 Sum_probs=51.3
Q ss_pred hhhcC-CeEEEc--CCC--ceeeEEeCCHHHHHHHHHHHhhhHhh-hcCCCcEEEeecCCCCeEEEEEEEec-CCCCEEE
Q psy11786 14 NSIHG-PICQRL--VAE--VVACEWLLTKDAIEENFKRAGPKLWL-FFGKDDMLVEKDIGRPRHIEVQILGD-KYGDVVH 86 (108)
Q Consensus 14 ~~~~g-Pv~vKp--~~g--G~G~~iV~~~~el~~a~~~a~~~a~~-~fgd~~vlIE~~i~~~reievqvl~d-~~g~~~~ 86 (108)
..++. |||||| ..| |+|.+++.|.+||....+........ -=+...++||+||.+ .|+.++++-+ -.|++..
T Consensus 148 p~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~ 226 (366)
T PRK13277 148 PEEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLEL 226 (366)
T ss_pred ccccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEE
Confidence 35778 999999 577 79999999999998876554431000 000134579999976 8999999977 3565544
No 78
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=97.95 E-value=6.3e-05 Score=58.80 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=52.8
Q ss_pred ccHHHHHHHhhhcC-C---eEEEcC--CCceeeEEeC-CHHHHHHHHH------------HHhhhHhhhcCCCcEEEeec
Q psy11786 5 KAFSRLMIFNSIHG-P---ICQRLV--AEVVACEWLL-TKDAIEENFK------------RAGPKLWLFFGKDDMLVEKD 65 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-P---v~vKp~--~gG~G~~iV~-~~~el~~a~~------------~a~~~a~~~fgd~~vlIE~~ 65 (108)
.++++.....++++ | ++|||+ .||.|.++++ +.+++...+. .+.+.+. . -.++++..|
T Consensus 129 ~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~-~--~~~llvMey 205 (329)
T PF15632_consen 129 RTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSE-E--FPPLLVMEY 205 (329)
T ss_pred CCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccC-C--CCCcEEecC
Confidence 45667666666665 5 999996 5569999999 4555443333 1222111 1 367999999
Q ss_pred CCCCeEEEEEEEecCCCCEEE
Q psy11786 66 IGRPRHIEVQILGDKYGDVVH 86 (108)
Q Consensus 66 i~~~reievqvl~d~~g~~~~ 86 (108)
+++ .|+.|++|++. |+++.
T Consensus 206 L~G-~EySVD~l~~~-G~via 224 (329)
T PF15632_consen 206 LPG-PEYSVDCLADE-GRVIA 224 (329)
T ss_pred CCC-CeEEEEEEecC-CEEEE
Confidence 987 99999999977 77764
No 79
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=97.59 E-value=0.00045 Score=50.60 Aligned_cols=79 Identities=15% Similarity=0.019 Sum_probs=56.2
Q ss_pred ccHHHHHHHhhhcC--CeEEEc--CCCc----eeeEEeCCHHHHHHHHHHHhhhHhh-------hcCCCcEEEeecCCCC
Q psy11786 5 KAFSRLMIFNSIHG--PICQRL--VAEV----VACEWLLTKDAIEENFKRAGPKLWL-------FFGKDDMLVEKDIGRP 69 (108)
Q Consensus 5 ~~~~~~~~~~~~~g--Pv~vKp--~~gG----~G~~iV~~~~el~~a~~~a~~~a~~-------~fgd~~vlIE~~i~~~ 69 (108)
.+.+++.+.++++| +++||| -.|| -|+.++++.++.....++-...... ..--..+|||++++..
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~ 104 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIK 104 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE---CC
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecCccC
Confidence 56789999999999 579999 3666 5999999999888777665543211 1112457999999999
Q ss_pred eEEEEEEEecCCCC
Q psy11786 70 RHIEVQILGDKYGD 83 (108)
Q Consensus 70 reievqvl~d~~g~ 83 (108)
+|+=+.++-|+..+
T Consensus 105 ~E~Ylsi~~DR~~~ 118 (202)
T PF08442_consen 105 REYYLSITLDRESR 118 (202)
T ss_dssp EEEEEEEEEETTTT
T ss_pred ceEEEEEEeccCCC
Confidence 99999998886643
No 80
>PRK06849 hypothetical protein; Provisional
Probab=97.52 E-value=0.00034 Score=54.82 Aligned_cols=71 Identities=8% Similarity=0.002 Sum_probs=44.7
Q ss_pred cHHHHHHHhhhc-C-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIH-G-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~-g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++..++.+. | |+++||+.|+ .|+.++.+.+.+. .... ..+.++++++||++ .++.+..+.. .
T Consensus 139 ~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~----~~~~-----~~~~~~ivQe~I~G-~e~~~~~~~~-~ 207 (389)
T PRK06849 139 DPEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALK----ELPI-----SKDNPWVMQEFIQG-KEYCSYSIVR-S 207 (389)
T ss_pred CHHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhc----cccc-----CCCCCeEEEEEecC-CeEEEEEEEE-C
Confidence 445666666665 8 9999997554 8999998844332 1111 11356999999987 5655554442 3
Q ss_pred CCEEEe
Q psy11786 82 GDVVHL 87 (108)
Q Consensus 82 g~~~~l 87 (108)
|+++..
T Consensus 208 G~v~~~ 213 (389)
T PRK06849 208 GELRAH 213 (389)
T ss_pred CEEEEE
Confidence 565443
No 81
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00055 Score=53.21 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=47.8
Q ss_pred HHHHhhhcC-CeEEEcC--CCceeeEEeCCHH-HHHHHHHHHhhhHhhhcCCCcEEEeecCCCCe-EEEEEEEec
Q psy11786 10 LMIFNSIHG-PICQRLV--AEVVACEWLLTKD-AIEENFKRAGPKLWLFFGKDDMLVEKDIGRPR-HIEVQILGD 79 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~--~gG~G~~iV~~~~-el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~r-eievqvl~d 79 (108)
....++.+| |+++||. ++|.|+.+|.+.+ +|.+.++..... +...+++.+||+.++ .+-.=+++|
T Consensus 147 ~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~ 216 (318)
T COG0189 147 AEFVAEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGG 216 (318)
T ss_pred HHHHHHhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeC
Confidence 344557788 9999996 5569999999999 888877777664 134689999998876 344444444
No 82
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=97.24 E-value=0.0015 Score=51.17 Aligned_cols=57 Identities=7% Similarity=0.147 Sum_probs=44.9
Q ss_pred HHhhhcC-CeEEEcCCC-----ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC-CeEEEEEEEecCC
Q psy11786 12 IFNSIHG-PICQRLVAE-----VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR-PRHIEVQILGDKY 81 (108)
Q Consensus 12 ~~~~~~g-Pv~vKp~~g-----G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~-~reievqvl~d~~ 81 (108)
...+.+| |+++||..| |.+|.+|++.+.|.. . ..++++.+||.. ++-+.|=|+||..
T Consensus 146 ~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~-------l------~~p~~lQEfVnh~g~d~RVfVvGd~v 209 (328)
T PLN02941 146 VALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSK-------L------EPPLVLQEFVNHGGVLFKVYVVGDYV 209 (328)
T ss_pred HHHhcCCCCEEEeecccCCCccccceEEecCHHHHHh-------c------CCcEEEEEecCCCCEEEEEEEECCEE
Confidence 3457899 999999765 499999999988765 1 347999999955 5778888888753
No 83
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=97.24 E-value=0.0026 Score=50.69 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=61.4
Q ss_pred ccHHHHHHHhhhcC--CeEEEc--CCCc----eeeEEeCCHHHHHHHHHHHhh----hHhhhcCCCcEEEeecCC-CCeE
Q psy11786 5 KAFSRLMIFNSIHG--PICQRL--VAEV----VACEWLLTKDAIEENFKRAGP----KLWLFFGKDDMLVEKDIG-RPRH 71 (108)
Q Consensus 5 ~~~~~~~~~~~~~g--Pv~vKp--~~gG----~G~~iV~~~~el~~a~~~a~~----~a~~~fgd~~vlIE~~i~-~~re 71 (108)
.+.+++.++++++| |++||+ -.|| -|++++.|.++..++.++-+. .....-=-..+|||+.++ ..+|
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~~~~~~~E 105 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDIIKKE 105 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEecCCCccce
Confidence 56789999999998 999999 3666 499999999998887777655 221111024689999998 4449
Q ss_pred EEEEEEecCCCC-EEEe
Q psy11786 72 IEVQILGDKYGD-VVHL 87 (108)
Q Consensus 72 ievqvl~d~~g~-~~~l 87 (108)
+=+.++-|+..+ ++.+
T Consensus 106 ~Ylsiv~DR~~~~p~~~ 122 (387)
T COG0045 106 YYLSIVLDRSSRRPVLM 122 (387)
T ss_pred EEEEEEEEcCCCcEEEE
Confidence 999998887644 3444
No 84
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=97.23 E-value=0.0047 Score=49.24 Aligned_cols=84 Identities=10% Similarity=-0.063 Sum_probs=64.5
Q ss_pred ccHHHHHHHhhhcC-Ce-EEEc-C-CCc----eeeEEeCCHHHHHHHHHHHhhhHh---hh----cCCCcEEEeecCCCC
Q psy11786 5 KAFSRLMIFNSIHG-PI-CQRL-V-AEV----VACEWLLTKDAIEENFKRAGPKLW---LF----FGKDDMLVEKDIGRP 69 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv-~vKp-~-~gG----~G~~iV~~~~el~~a~~~a~~~a~---~~----fgd~~vlIE~~i~~~ 69 (108)
.+.+++.+.+++|| |. +||+ + .|| -|+.+..+.+++..+++....... .. ..-..++||+.+...
T Consensus 26 ~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~ 105 (392)
T PRK14046 26 YSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIE 105 (392)
T ss_pred CCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhhccCCCCCeeeeEEEEEecCCC
Confidence 46789999999999 65 9998 3 455 589999999999999988776421 11 112468999999888
Q ss_pred eEEEEEEEecCC-CCEEEec
Q psy11786 70 RHIEVQILGDKY-GDVVHLY 88 (108)
Q Consensus 70 reievqvl~d~~-g~~~~l~ 88 (108)
+|+-+.+.-|.. |.++.++
T Consensus 106 ~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 106 RELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred cEEEEEEEECCCCCcEEEEE
Confidence 999999998854 7777663
No 85
>PRK12458 glutathione synthetase; Provisional
Probab=97.22 E-value=0.0019 Score=50.39 Aligned_cols=67 Identities=3% Similarity=-0.002 Sum_probs=45.6
Q ss_pred cHHHHHHHhhhcC-C-eEEEcC--CCceeeEEeCCHHH--HHHHHHHHhhhHhhhcCCCcEEEeecCCCC--eEEEEEEE
Q psy11786 6 AFSRLMIFNSIHG-P-ICQRLV--AEVVACEWLLTKDA--IEENFKRAGPKLWLFFGKDDMLVEKDIGRP--RHIEVQIL 77 (108)
Q Consensus 6 ~~~~~~~~~~~~g-P-v~vKp~--~gG~G~~iV~~~~e--l~~a~~~a~~~a~~~fgd~~vlIE~~i~~~--reievqvl 77 (108)
+.+++.++.+++| | ++|||. .||.|+.++++.+. +...++.... ...+++++||++. .++.+-++
T Consensus 149 ~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv 221 (338)
T PRK12458 149 NKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL 221 (338)
T ss_pred CHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE
Confidence 3456667778886 5 999996 44599999987764 5444443222 3579999999853 45666666
Q ss_pred ec
Q psy11786 78 GD 79 (108)
Q Consensus 78 ~d 79 (108)
++
T Consensus 222 ~g 223 (338)
T PRK12458 222 NG 223 (338)
T ss_pred CC
Confidence 53
No 86
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=97.03 E-value=0.0039 Score=47.96 Aligned_cols=69 Identities=9% Similarity=0.127 Sum_probs=47.2
Q ss_pred cHHHHHHHhhhcCCeEEEcCCCc--eeeEEeCCH-HHHHHHHHHHhhhHhhhcCCCcEEEeecCCC--CeEEEEEEEec
Q psy11786 6 AFSRLMIFNSIHGPICQRLVAEV--VACEWLLTK-DAIEENFKRAGPKLWLFFGKDDMLVEKDIGR--PRHIEVQILGD 79 (108)
Q Consensus 6 ~~~~~~~~~~~~gPv~vKp~~gG--~G~~iV~~~-~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~--~reievqvl~d 79 (108)
+.+++.++.+..||+++||..|. .|+.++.+. ..+...++... ..+...+++.+||+. .+++.+-++++
T Consensus 142 ~~~~~~~~~~~~g~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~-----~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g 215 (312)
T TIGR01380 142 DKAEIRAFLAEHGDIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT-----QRGREPVMAQRYLPEIKEGDKRILLIDG 215 (312)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCCCceEEEEcCCCccHHHHHHHHH-----hccCCcEEEEeccccccCCCEEEEEECC
Confidence 45667777788889999997554 899998763 33433333222 223567999999974 36888888864
No 87
>PRK05246 glutathione synthetase; Provisional
Probab=96.97 E-value=0.0054 Score=47.12 Aligned_cols=68 Identities=7% Similarity=0.142 Sum_probs=46.7
Q ss_pred cHHHHHHHhhhcCCeEEEcCCC--ceeeEEeCC-HHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCC--eEEEEEEEe
Q psy11786 6 AFSRLMIFNSIHGPICQRLVAE--VVACEWLLT-KDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRP--RHIEVQILG 78 (108)
Q Consensus 6 ~~~~~~~~~~~~gPv~vKp~~g--G~G~~iV~~-~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~--reievqvl~ 78 (108)
+.+.+.++.++.||+++||..| |.|+.++.. ..++...++.... .+..++++.+||+.. ..+.+-+++
T Consensus 143 ~~~~~~~~~~~~~~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv~ 215 (316)
T PRK05246 143 DKAEIRAFRAEHGDIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLVD 215 (316)
T ss_pred CHHHHHHHHHHCCCEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEEC
Confidence 4556667778888999999755 499999954 4444433333221 235689999999763 578888774
No 88
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=96.96 E-value=0.00085 Score=46.83 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=28.7
Q ss_pred cC-CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEEEe
Q psy11786 17 HG-PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHL 87 (108)
Q Consensus 17 ~g-Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~~l 87 (108)
.. |+++||. .||.|++++++.+++...+... .++++||++ .++.+.++.++. .+..+
T Consensus 30 ~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~~------------~i~Qe~i~G-~~~Sv~~l~~~~-~~~~l 89 (161)
T PF02655_consen 30 IDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNKL------------RIVQEFIEG-EPYSVSFLASGG-GARLL 89 (161)
T ss_dssp -SSSEEEEESS-------B--SS--TTE-------------------EEEE---S-EEEEEEEEE-SS-SEEEE
T ss_pred cCCcEEEEeCCCCCCCCeEEECCchhhccccccc------------eEEeeeeCC-EEeEEEEEEeCC-ceEEE
Confidence 46 9999996 4449999999998877644331 299999986 999999998764 34333
No 89
>PLN02235 ATP citrate (pro-S)-lyase
Probab=96.93 E-value=0.011 Score=47.80 Aligned_cols=79 Identities=10% Similarity=-0.013 Sum_probs=59.6
Q ss_pred ccHHHHHHHhhh---cC-C-eEEEc--CCCc----eeeEEeCCHHHHHHHHHHHhhhHh-----hhcCCCcEEEeecCCC
Q psy11786 5 KAFSRLMIFNSI---HG-P-ICQRL--VAEV----VACEWLLTKDAIEENFKRAGPKLW-----LFFGKDDMLVEKDIGR 68 (108)
Q Consensus 5 ~~~~~~~~~~~~---~g-P-v~vKp--~~gG----~G~~iV~~~~el~~a~~~a~~~a~-----~~fgd~~vlIE~~i~~ 68 (108)
.+.+++.+.+++ || | ++||| -.|| -|+.++.|.+|..+..++-+..-. .. --..+|||++++.
T Consensus 35 ~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G-~v~~vLVEe~v~i 113 (423)
T PLN02235 35 TESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKG-PITTFIVEPFVPH 113 (423)
T ss_pred CCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCc-cEeEEEEEecCCC
Confidence 455777777776 88 5 59999 3666 489999999999988887665421 11 0136899999988
Q ss_pred CeEEEEEEEecCCCCE
Q psy11786 69 PRHIEVQILGDKYGDV 84 (108)
Q Consensus 69 ~reievqvl~d~~g~~ 84 (108)
.+|+=+.++-|+....
T Consensus 114 ~~E~Ylsi~~DR~~~~ 129 (423)
T PLN02235 114 DQEFYLSIVSDRLGCS 129 (423)
T ss_pred cceEEEEEEEecCCCE
Confidence 8999999998877544
No 90
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=96.86 E-value=0.0098 Score=48.05 Aligned_cols=80 Identities=10% Similarity=0.000 Sum_probs=57.4
Q ss_pred ccHHHHHHHhhhc---C-CeEEEcC--CCcee-----------eEEeCCHHHHHHHHHHHhhhH--hh-----hcCCCcE
Q psy11786 5 KAFSRLMIFNSIH---G-PICQRLV--AEVVA-----------CEWLLTKDAIEENFKRAGPKL--WL-----FFGKDDM 60 (108)
Q Consensus 5 ~~~~~~~~~~~~~---g-Pv~vKp~--~gG~G-----------~~iV~~~~el~~a~~~a~~~a--~~-----~fgd~~v 60 (108)
.+.+++.+.++++ | |+++|+. .||+| +.++.+ +++.+++++-.... .. ..--..+
T Consensus 53 ~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~v 131 (422)
T PLN00124 53 SSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKV 131 (422)
T ss_pred CCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCceeceE
Confidence 4678888888998 8 9999995 67744 557766 88888888776541 10 1112358
Q ss_pred EEeecCCCCeEEEEEEEecCC--CCEE
Q psy11786 61 LVEKDIGRPRHIEVQILGDKY--GDVV 85 (108)
Q Consensus 61 lIE~~i~~~reievqvl~d~~--g~~~ 85 (108)
|||+.+...+|+=+.+.-|.. |+++
T Consensus 132 lv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 132 YLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred EEEEeecCCceEEEEEEeccccCCcEE
Confidence 877777778899999998863 6666
No 91
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=96.35 E-value=0.0098 Score=46.71 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=45.8
Q ss_pred HHHHHhhhcC-CeEEEcCCCc----eeeE---EeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEE
Q psy11786 9 RLMIFNSIHG-PICQRLVAEV----VACE---WLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEV 74 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG----~G~~---iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reiev 74 (108)
++...+.++- |||+||..|| .|-. .+.+.+++.-++..|..+ .|.+.++|..+|+++-|=.+
T Consensus 138 ~~d~~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE~qf 207 (415)
T COG3919 138 EIDTLVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGENQF 207 (415)
T ss_pred hhhhhhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCcccc
Confidence 4445667888 9999999888 3333 345667788888777666 56899999999999877433
No 92
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.026 Score=44.44 Aligned_cols=64 Identities=8% Similarity=-0.059 Sum_probs=45.2
Q ss_pred HhhhcC-CeEEEc--CCCceeeEEeCCHHHHHHHHHHHhhhHhhhc-CCCcEEEeecCCCCeEEEEEEE
Q psy11786 13 FNSIHG-PICQRL--VAEVVACEWLLTKDAIEENFKRAGPKLWLFF-GKDDMLVEKDIGRPRHIEVQIL 77 (108)
Q Consensus 13 ~~~~~g-Pv~vKp--~~gG~G~~iV~~~~el~~a~~~a~~~a~~~f-gd~~vlIE~~i~~~reievqvl 77 (108)
-.+++. |||||+ +.||+|-.++.+.+||.+..++.....-.-- +-..+-||+|+-+ .++-...+
T Consensus 145 ~PeeIdr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yF 212 (361)
T COG1759 145 SPEEIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYF 212 (361)
T ss_pred ChHHcCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeee
Confidence 356788 999999 6778999999999999999888776311000 0135789999876 44444433
No 93
>KOG0237|consensus
Probab=96.03 E-value=0.045 Score=46.34 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=59.1
Q ss_pred cHHHHHHHhhhcC--CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCC--CcEEEeecCCCCeEEEEEEEec
Q psy11786 6 AFSRLMIFNSIHG--PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGK--DDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 6 ~~~~~~~~~~~~g--Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd--~~vlIE~~i~~~reievqvl~d 79 (108)
+.+++..+..+.+ +++||+. +.|+|+.+..+.+|--+|+++.... ..||. ..++||+++++ .|+.+--+-|
T Consensus 131 ~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~--~~fg~AG~tvViEE~LEG-eEvS~laftD 207 (788)
T KOG0237|consen 131 DPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVK--KVFGSAGKTVVIEELLEG-EEVSFLAFTD 207 (788)
T ss_pred CHHHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhh--hhhccccceEehhhhcCc-ceEEEEEEec
Confidence 4577778888888 8999995 6779999999999988888886553 44764 56999999986 8888888878
Q ss_pred CC
Q psy11786 80 KY 81 (108)
Q Consensus 80 ~~ 81 (108)
++
T Consensus 208 G~ 209 (788)
T KOG0237|consen 208 GY 209 (788)
T ss_pred Cc
Confidence 76
No 94
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.98 E-value=0.05 Score=43.00 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=49.0
Q ss_pred HHHHHHhhh---cCCeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEE
Q psy11786 8 SRLMIFNSI---HGPICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQIL 77 (108)
Q Consensus 8 ~~~~~~~~~---~gPv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl 77 (108)
+++...+.. -|||-+||+ .||.|..++.+.++|+.++...-..... ...+.+|+.+..+.-+.|..+
T Consensus 124 ~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~T~SVGqv 195 (355)
T PF11379_consen 124 EDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVVTYSVGQV 195 (355)
T ss_pred HHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCceeeEEEE
Confidence 445444433 239999995 7779999999999999999875443332 355899999987776766654
No 95
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=95.13 E-value=0.091 Score=38.66 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=41.6
Q ss_pred cC-CeEEEc--CCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 17 HG-PICQRL--VAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 17 ~g-Pv~vKp--~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
-. |++||- +.+|.|--+|+|..+|++.-...+.. ++-+.+|+||+.-..|.+|-+|+.
T Consensus 49 ~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sll~~~------~~Y~T~EPfId~kyDirvqkIG~~ 109 (203)
T PF02750_consen 49 PRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASLLAIT------KDYATTEPFIDAKYDIRVQKIGNN 109 (203)
T ss_dssp SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHHHHHH------TS-EEEEE---EEEEEEEEEETTE
T ss_pred CCCCEEEEEccccCceeEEEEccHHHHHHHHHHHHhc------CceEEeeccccceeEEEEEEEcCe
Confidence 35 999999 48889999999999988765555443 566899999988778999999764
No 96
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=94.59 E-value=0.06 Score=42.71 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=36.9
Q ss_pred CeEEEcCCCcee-eEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEEEe
Q psy11786 19 PICQRLVAEVVA-CEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHL 87 (108)
Q Consensus 19 Pv~vKp~~gG~G-~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~~l 87 (108)
|+++||+.||-| +.++.-.++.. -..+++..||++ +++.+.+++++. +++++
T Consensus 151 t~IlKPv~GaGG~~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is~g~-~a~~l 203 (389)
T COG2232 151 TLILKPVSGAGGLVELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFISNGS-DALTL 203 (389)
T ss_pred eeEEeeccCCCceeeecccccccC---------------CcceehhhhcCC-ceeEEEEEecCc-ceEEE
Confidence 899999988877 44443333321 145889999976 999999999865 34443
No 97
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=93.87 E-value=0.39 Score=37.57 Aligned_cols=32 Identities=3% Similarity=-0.068 Sum_probs=21.1
Q ss_pred HHHHHHhhhcCCeEEEcCCCc--eeeEEeCCHHH
Q psy11786 8 SRLMIFNSIHGPICQRLVAEV--VACEWLLTKDA 39 (108)
Q Consensus 8 ~~~~~~~~~~gPv~vKp~~gG--~G~~iV~~~~e 39 (108)
+++.++.+..+||+|||..|. +|+.++.+.++
T Consensus 66 ~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~~ 99 (317)
T TIGR02291 66 KTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKD 99 (317)
T ss_pred HHHHHHHccCCCEEEEECCCCCccCeEEEEeccc
Confidence 334444433337999998665 99999976543
No 98
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=93.00 E-value=0.3 Score=34.99 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=40.7
Q ss_pred cHHHHHHHhhhcCCeEEEcC--CCceeeEEeCCH-HHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCe--EEEEEEE
Q psy11786 6 AFSRLMIFNSIHGPICQRLV--AEVVACEWLLTK-DAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPR--HIEVQIL 77 (108)
Q Consensus 6 ~~~~~~~~~~~~gPv~vKp~--~gG~G~~iV~~~-~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~r--eievqvl 77 (108)
+.+++..+.++.|=++|||. .||.|+.++... ..+...++..... +..++++.+|++.-+ +..+=++
T Consensus 20 ~~~~i~~f~~~~~~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~-----~~~~~mvQ~flp~i~~GDkRii~~ 91 (173)
T PF02955_consen 20 DKEEIRAFIEEHGDIVLKPLDGMGGRGVFRISRDDPNLNSILETLTKN-----GERPVMVQPFLPEIKEGDKRIILF 91 (173)
T ss_dssp -HHHHHHHHHHHSSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTT-----TTS-EEEEE--GGGGG-EEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhc-----CCccEEEEeccccccCCCEEEEEE
Confidence 45667777777778999995 555999999884 4555555555443 256799999987533 4444444
No 99
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=90.98 E-value=0.23 Score=37.40 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=28.4
Q ss_pred CeEEEcCCC--ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCC-----e--EEEEEEEec
Q psy11786 19 PICQRLVAE--VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRP-----R--HIEVQILGD 79 (108)
Q Consensus 19 Pv~vKp~~g--G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~-----r--eievqvl~d 79 (108)
-+|+||..+ |.|+.++++.+++... ... .....+|.+||++| | ++.+=||=.
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---~~~------~~~~~vvQkYI~~PlLi~grKFDlR~yvlvt 127 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---SKN------KNQPYVVQKYIENPLLIDGRKFDLRVYVLVT 127 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---HCC------TTS-EEEEE--SSB--BTTB-EEEEEEEEE-
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---hhh------hhhhhhhhhccCCCeEEeeeeEEEEEEEEEe
Confidence 489999755 5999999999887654 111 25678999999764 2 555555533
No 100
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=90.95 E-value=0.5 Score=36.10 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=26.6
Q ss_pred ccHHHHHHHhhhc--CCeEEEcC--CCceeeEEeCCHH
Q psy11786 5 KAFSRLMIFNSIH--GPICQRLV--AEVVACEWLLTKD 38 (108)
Q Consensus 5 ~~~~~~~~~~~~~--gPv~vKp~--~gG~G~~iV~~~~ 38 (108)
.+.++..++.+.. .++++||+ .||.|+.++...+
T Consensus 59 ~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~~ 96 (285)
T PF14397_consen 59 HSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRRD 96 (285)
T ss_pred cCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEeec
Confidence 5677888888776 39999997 4459999987765
No 101
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=82.06 E-value=2.8 Score=32.67 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=34.2
Q ss_pred hhcC-CeEEEcC-CCc----eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC-CeEEEEEEEecC
Q psy11786 15 SIHG-PICQRLV-AEV----VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR-PRHIEVQILGDK 80 (108)
Q Consensus 15 ~~~g-Pv~vKp~-~gG----~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~-~reievqvl~d~ 80 (108)
+.+. |+++||. +-| =.|.+|.+.+.|.. . ..++++.+||.. +.-+.|=|+||.
T Consensus 135 agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L------~~P~VlQeFVNHggvLfKVyVvGd~ 194 (307)
T PF05770_consen 135 AGLKFPLICKPLVACGSADSHKMAIVFNEEGLKD-------L------KPPCVLQEFVNHGGVLFKVYVVGDK 194 (307)
T ss_dssp TTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTE
T ss_pred CCCcccEEeeehhhcCCccceEEEEEECHHHHhh-------c------CCCEEEEEeecCCCEEEEEEEecCE
Confidence 5677 9999993 445 59999999998854 1 468999999965 456777777664
No 102
>KOG2799|consensus
Probab=78.49 E-value=5.2 Score=32.35 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=31.3
Q ss_pred ccHHHHHHHhhhcC--CeEEEc--CCCc-----------eeeEEeCCHHHHHH
Q psy11786 5 KAFSRLMIFNSIHG--PICQRL--VAEV-----------VACEWLLTKDAIEE 42 (108)
Q Consensus 5 ~~~~~~~~~~~~~g--Pv~vKp--~~gG-----------~G~~iV~~~~el~~ 42 (108)
++.+++.++++++| -++||+ -+|| .|+.+|.+++|-..
T Consensus 48 ~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~ 100 (434)
T KOG2799|consen 48 KSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKA 100 (434)
T ss_pred CCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHH
Confidence 67899999999999 999999 3555 48999999777443
No 103
>KOG2156|consensus
Probab=75.57 E-value=1 Score=37.86 Aligned_cols=37 Identities=5% Similarity=-0.099 Sum_probs=26.6
Q ss_pred cHHHHHHHhhhcC--CeEEEcC--CCceeeEEeCCHHHHHH
Q psy11786 6 AFSRLMIFNSIHG--PICQRLV--AEVVACEWLLTKDAIEE 42 (108)
Q Consensus 6 ~~~~~~~~~~~~g--Pv~vKp~--~gG~G~~iV~~~~el~~ 42 (108)
+.++..+.+.+.. =+||||- +-|+|+++++...++..
T Consensus 292 d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk 332 (662)
T KOG2156|consen 292 DREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK 332 (662)
T ss_pred cHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC
Confidence 3455666666544 4779994 45599999999988765
No 104
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.07 E-value=5.8 Score=27.15 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=24.4
Q ss_pred HHHHHHHhhhcC-CeEEEcCCCc---eeeEEeCC
Q psy11786 7 FSRLMIFNSIHG-PICQRLVAEV---VACEWLLT 36 (108)
Q Consensus 7 ~~~~~~~~~~~g-Pv~vKp~~gG---~G~~iV~~ 36 (108)
....+.+++.+| |++|||-.|- .+|+++..
T Consensus 84 ~~~ildva~aVga~l~I~pL~Ge~vp~~mklvny 117 (129)
T COG1255 84 QSAILDVAKAVGAPLYIKPLTGEPVPVEMKLVNY 117 (129)
T ss_pred HHHHHHHHHhhCCCEEEEecCCCCCccceEEEec
Confidence 356788999999 9999998777 78887753
No 105
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=72.34 E-value=7.4 Score=26.38 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=37.3
Q ss_pred CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEe
Q psy11786 19 PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILG 78 (108)
Q Consensus 19 Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~ 78 (108)
|+||||...- +--.++.+.++|.. .... -.+..+++-+.+.-.+|+.+=|+.
T Consensus 3 ~~FiKP~~~~K~F~g~V~~~~~dl~~----~~~~----~~~~~V~vSe~v~~~~E~R~fi~~ 56 (130)
T PF14243_consen 3 PVFIKPPDDDKSFTGRVFRSGEDLIG----FGSL----DPDTPVLVSEVVEIESEWRCFIVD 56 (130)
T ss_pred CeEeCCCCCCCcceeEEEcchhhccc----cCCC----CCCceEEEeceEeeeeeEEEEEEC
Confidence 8999999866 55567777776651 1111 226789999998877899888874
No 106
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=63.15 E-value=11 Score=28.38 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=35.3
Q ss_pred cHHHHHHHhhhcCCeEEEcCCCc--eeeEEeCC----------------------HHHHHHHHHHHhhhHhhhcCCCcEE
Q psy11786 6 AFSRLMIFNSIHGPICQRLVAEV--VACEWLLT----------------------KDAIEENFKRAGPKLWLFFGKDDML 61 (108)
Q Consensus 6 ~~~~~~~~~~~~gPv~vKp~~gG--~G~~iV~~----------------------~~el~~a~~~a~~~a~~~fgd~~vl 61 (108)
+.+.+..+.+..+-|+|||+.|. .|+..+.. .++|...+... ++....+
T Consensus 44 ~~~~l~~~L~~y~~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~yI 116 (262)
T PF14398_consen 44 SFEDLREMLNKYKSVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL-------LGKRRYI 116 (262)
T ss_pred CHHHHHHHHHHCCEEEEEeCCCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh-------cCCCcEE
Confidence 34566666677779999998665 66655422 23444444332 3367899
Q ss_pred EeecCCC
Q psy11786 62 VEKDIGR 68 (108)
Q Consensus 62 IE~~i~~ 68 (108)
|.+.|+-
T Consensus 117 iQq~I~l 123 (262)
T PF14398_consen 117 IQQGIPL 123 (262)
T ss_pred EeCCccc
Confidence 9999854
No 107
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=60.37 E-value=34 Score=20.43 Aligned_cols=43 Identities=7% Similarity=-0.028 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcC-CeEEEcC----CCceeeEEeCCHHHHHHHHHHHhh
Q psy11786 7 FSRLMIFNSIHG-PICQRLV----AEVVACEWLLTKDAIEENFKRAGP 49 (108)
Q Consensus 7 ~~~~~~~~~~~g-Pv~vKp~----~gG~G~~iV~~~~el~~a~~~a~~ 49 (108)
+=.+.+..+..| |+-+-|+ ..|.|+.+..+.++++.+.+....
T Consensus 14 a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~ 61 (73)
T PF11823_consen 14 AMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEE 61 (73)
T ss_pred HHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHH
Confidence 334566778899 9999995 566999999888888777766554
No 108
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=58.29 E-value=26 Score=28.86 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=40.4
Q ss_pred HHHHHhhhcC-CeEEEcC--CCceeeEEe--CCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 9 RLMIFNSIHG-PICQRLV--AEVVACEWL--LTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~--~gG~G~~iV--~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
+..+.+...- -+++||+ .||.|+.+= .+.++.+.+++.+.. .+.++.+|+.-+ ..+...+.|
T Consensus 329 dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~--------~~yilQe~v~~~-~~~~~~~~d 395 (445)
T PF14403_consen 329 DLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAR--------EPYILQEYVRPP-REPMPAFED 395 (445)
T ss_pred hHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhc--------CCcEEEEEecCC-ccccccccC
Confidence 3344555555 8899995 677888775 557788888877654 467888888543 333334433
No 109
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.55 E-value=64 Score=22.30 Aligned_cols=46 Identities=9% Similarity=-0.045 Sum_probs=35.3
Q ss_pred ccccHHHHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhh
Q psy11786 3 KNKAFSRLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPK 50 (108)
Q Consensus 3 ~~~~~~~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~ 50 (108)
.+.+..++.+..-.++ ||.||-+. +|..+--.++++.+..+.++.+
T Consensus 15 a~vsp~elv~~l~~~~~PvtiKeTC--fGaii~G~Ed~v~klveriR~~ 61 (142)
T COG4029 15 AGVSPKELVQKLLELSPPVTIKETC--FGAIIDGPEDEVRKLVERIREL 61 (142)
T ss_pred cCcChHHHHHHHHhcCCCeEeeeee--eeeeecCcHHHHHHHHHHHHHh
Confidence 3456778888889999 99999654 5665666677888888888887
No 110
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=55.88 E-value=33 Score=25.49 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=29.3
Q ss_pred hhcC-CeEEEcCCCceeeEEeCCHH--HHHHHHHHHhhhH---------hhhcCC--CcEEEeecCCC
Q psy11786 15 SIHG-PICQRLVAEVVACEWLLTKD--AIEENFKRAGPKL---------WLFFGK--DDMLVEKDIGR 68 (108)
Q Consensus 15 ~~~g-Pv~vKp~~gG~G~~iV~~~~--el~~a~~~a~~~a---------~~~fgd--~~vlIE~~i~~ 68 (108)
..+. +++|||++|.-+..+|.+.. +...+.....+.- .-.|.+ ..+++|+++..
T Consensus 53 ~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~ 120 (239)
T PF14305_consen 53 DSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLED 120 (239)
T ss_pred hcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEecccc
Confidence 4567 99999998764555555432 2222222221111 112222 46899999865
No 111
>PRK04148 hypothetical protein; Provisional
Probab=52.86 E-value=25 Score=24.18 Aligned_cols=28 Identities=4% Similarity=0.039 Sum_probs=22.2
Q ss_pred HHHHHHhhhcC-CeEEEcCCCc---eeeEEeC
Q psy11786 8 SRLMIFNSIHG-PICQRLVAEV---VACEWLL 35 (108)
Q Consensus 8 ~~~~~~~~~~g-Pv~vKp~~gG---~G~~iV~ 35 (108)
..+.++|+++| +++|||-.|- .++..+.
T Consensus 92 ~~~~~la~~~~~~~~i~~l~~e~~~~~~kl~n 123 (134)
T PRK04148 92 PFILELAKKINVPLIIKPLSGEEPIKELKLIN 123 (134)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCcceEEEe
Confidence 45688999999 9999997665 5666654
No 112
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=50.43 E-value=70 Score=21.36 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEe
Q psy11786 38 DAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILG 78 (108)
Q Consensus 38 ~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~ 78 (108)
+|+.. |+++....-++.|.+-++.|.+..+..|.-+|++.
T Consensus 68 ~Ei~~-f~~~L~~mf~~~~~~vvf~E~~~~~~~H~~iq~vP 107 (121)
T PF04677_consen 68 EEIRN-FQKSLRKMFASQGKDVVFFERVRKRNPHTHIQCVP 107 (121)
T ss_pred HHHHH-HHHHHHHHHHHcCCCEEEEEEeCCCCcEEEEEEEE
Confidence 35544 55555555566777889999997778898888773
No 113
>PRK00341 hypothetical protein; Provisional
Probab=49.30 E-value=47 Score=21.17 Aligned_cols=31 Identities=6% Similarity=0.106 Sum_probs=25.1
Q ss_pred CeEEEcCCCc--eeeEE---eCCHHHHHHHHHHHhh
Q psy11786 19 PICQRLVAEV--VACEW---LLTKDAIEENFKRAGP 49 (108)
Q Consensus 19 Pv~vKp~~gG--~G~~i---V~~~~el~~a~~~a~~ 49 (108)
++-+||+.+| ..+++ |.+.+++...++....
T Consensus 48 ~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 48 TLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRA 83 (91)
T ss_pred ceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhh
Confidence 7788999999 56655 7999999888877655
No 114
>KOG3895|consensus
Probab=48.91 E-value=18 Score=29.35 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=38.6
Q ss_pred CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 19 PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 19 Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
||+||-. ..|.|=-+|.|.+||... +.....+ +..+-+|.||+.--.|.+|-+|..+
T Consensus 241 PvVVkvghahsGmGKiKV~Nh~dfqDi-~svval~-----~Tyat~epFiDaKYDiriQKIG~nY 299 (488)
T KOG3895|consen 241 PVVVKVGHAHSGMGKIKVENHEDFQDI-ASVVALT-----KTYATAEPFIDAKYDIRIQKIGHNY 299 (488)
T ss_pred cEEEEecccccccceeeecchhhhHhH-HHHHHHH-----hhhhhccccccccceeehhhhhhhH
Confidence 9999974 555788889999888653 3333332 3345778888765578888776533
No 115
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=48.77 E-value=39 Score=24.01 Aligned_cols=29 Identities=21% Similarity=0.042 Sum_probs=23.2
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
..|++.++|..+++++... +.+.+||=.+
T Consensus 155 ~~v~~~~el~~al~~al~~------~gp~vIev~~ 183 (193)
T cd03375 155 GFSGDIKQLKEIIKKAIQH------KGFSFVEVLS 183 (193)
T ss_pred EecCCHHHHHHHHHHHHhc------CCCEEEEEEC
Confidence 3589999999999999864 6777777655
No 116
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=48.25 E-value=35 Score=24.21 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=23.5
Q ss_pred eeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 30 ACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 30 G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
+...|++.++|.++++.+... +.+.+||=.++
T Consensus 132 ~~~~v~~~~el~~al~~a~~~------~~p~lIev~~~ 163 (188)
T cd03371 132 AVYEVPSLEELVAALAKALAA------DGPAFIEVKVR 163 (188)
T ss_pred eEEecCCHHHHHHHHHHHHhC------CCCEEEEEEec
Confidence 345688999999999988753 56677766653
No 117
>KOG1783|consensus
Probab=48.10 E-value=24 Score=22.02 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=24.9
Q ss_pred HhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhh
Q psy11786 13 FNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPK 50 (108)
Q Consensus 13 ~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~ 50 (108)
.++-+| ||.||-..|- +|...+-+. =+.-+++++..+
T Consensus 11 l~~iiGr~V~VKl~sgvdyrG~l~~lDg-ymNiaLe~tee~ 50 (77)
T KOG1783|consen 11 LKAIIGRTVVVKLNSGVDYRGTLVCLDG-YMNIALESTEEY 50 (77)
T ss_pred HHHHhCCeEEEEecCCccccceehhhhh-HHHHHHHHHHHH
Confidence 456789 9999998887 888776553 234455555443
No 118
>KOG2157|consensus
Probab=47.79 E-value=22 Score=29.69 Aligned_cols=49 Identities=10% Similarity=-0.018 Sum_probs=33.8
Q ss_pred CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcC-CCcEEEeecCCCC
Q psy11786 19 PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFG-KDDMLVEKDIGRP 69 (108)
Q Consensus 19 Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fg-d~~vlIE~~i~~~ 69 (108)
..||||. .-|+|+.++++.+++...+.....+ .+.+ ++...+-+||+.|
T Consensus 201 ~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~--~s~~~~~~~vv~~yi~~p 252 (497)
T KOG2157|consen 201 WWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF--ISENNDEGYVVSAYIDRP 252 (497)
T ss_pred eEEeccccccccceeEEecchhhhhhhhhccccc--ccccccccceeeeeccCc
Confidence 8999996 5569999999999987766543311 1111 4566777777654
No 119
>TIGR03272 methan_mark_6 putative methanogenesis marker protein 6. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=46.98 E-value=94 Score=21.47 Aligned_cols=45 Identities=7% Similarity=-0.072 Sum_probs=37.1
Q ss_pred cccHHHHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhh
Q psy11786 4 NKAFSRLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPK 50 (108)
Q Consensus 4 ~~~~~~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~ 50 (108)
..+.+++...+-++. ||.||=+. +|..+--..+++...++..+..
T Consensus 8 ~vsPs~l~~~~~~l~~~v~iKETC--fG~~i~G~~e~V~~~v~~iR~l 53 (132)
T TIGR03272 8 KVSPKELVQKLYELELPVTIKETC--FGAIITGPEEEVMKVAERIREL 53 (132)
T ss_pred CcCHHHHHHHHHhcCCCceeeeee--eeeeeeCCHHHHHHHHHHHHhh
Confidence 357788888999999 99999543 6777777889999999998886
No 120
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=46.64 E-value=38 Score=25.04 Aligned_cols=30 Identities=7% Similarity=-0.047 Sum_probs=24.6
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..+++.++|.++++++... +.+.+||=+++
T Consensus 171 ~~v~~~~el~~al~~a~~~------~gP~lIev~~~ 200 (235)
T cd03376 171 ASVAYPEDLYKKVKKALSI------EGPAYIHILSP 200 (235)
T ss_pred EcCCCHHHHHHHHHHHHhC------CCCEEEEEECC
Confidence 3689999999999999875 77888877764
No 121
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=46.09 E-value=47 Score=22.27 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.8
Q ss_pred EeCCH--HHHHHHHHHHhhhHhhhcCCCcEEEe
Q psy11786 33 WLLTK--DAIEENFKRAGPKLWLFFGKDDMLVE 63 (108)
Q Consensus 33 iV~~~--~el~~a~~~a~~~a~~~fgd~~vlIE 63 (108)
.|++. +||.+++++++.. +.+.+||
T Consensus 126 ~v~~~~~~el~~al~~a~~~------~gp~vIe 152 (153)
T PF02775_consen 126 RVTTPDPEELEEALREALES------GGPAVIE 152 (153)
T ss_dssp EESCHSHHHHHHHHHHHHHS------SSEEEEE
T ss_pred EEccCCHHHHHHHHHHHHhC------CCcEEEE
Confidence 67788 9999999999965 6777776
No 122
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=45.89 E-value=87 Score=20.77 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=36.7
Q ss_pred cccHHHHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhh
Q psy11786 4 NKAFSRLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPK 50 (108)
Q Consensus 4 ~~~~~~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~ 50 (108)
+.+.+++...+-.++ ||.||=+. .|.-+==..+++.+.++..++.
T Consensus 9 ~v~Ps~l~~~~~~~~~~v~iKETC--FG~~i~Ge~e~V~~~i~~iR~l 54 (104)
T PF09875_consen 9 NVSPSDLAMKLYELSLPVTIKETC--FGAMIEGEEEEVDKVIEEIRKL 54 (104)
T ss_pred CcCHHHHHHHHHhcCCCceeeecc--eeeEEECCHHHHHHHHHHHHhh
Confidence 357788888889999 99999543 6777777888899999988886
No 123
>PRK00907 hypothetical protein; Provisional
Probab=45.61 E-value=47 Score=21.34 Aligned_cols=30 Identities=7% Similarity=0.054 Sum_probs=22.9
Q ss_pred eEEEcCCCc--eeeEE---eCCHHHHHHHHHHHhh
Q psy11786 20 ICQRLVAEV--VACEW---LLTKDAIEENFKRAGP 49 (108)
Q Consensus 20 v~vKp~~gG--~G~~i---V~~~~el~~a~~~a~~ 49 (108)
+-+||+.+| .++++ +++.++|...++....
T Consensus 50 i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~ 84 (92)
T PRK00907 50 ISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRD 84 (92)
T ss_pred EEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhh
Confidence 467999999 56554 7999999877776554
No 124
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=44.66 E-value=60 Score=20.98 Aligned_cols=30 Identities=3% Similarity=0.088 Sum_probs=22.0
Q ss_pred eEEEcCCCc--eeeEE---eCCHHHHHHHHHHHhh
Q psy11786 20 ICQRLVAEV--VACEW---LLTKDAIEENFKRAGP 49 (108)
Q Consensus 20 v~vKp~~gG--~G~~i---V~~~~el~~a~~~a~~ 49 (108)
+-.||++.| .+++| +.+.++++..++....
T Consensus 48 ~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~ 82 (90)
T COG2921 48 VSWKPSSKGNYLSVSITIRATNIEQVEALYRELRK 82 (90)
T ss_pred eeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhh
Confidence 446999999 77776 6888888776665443
No 125
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=43.01 E-value=43 Score=23.37 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=23.2
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.++|.++++.+... +.+.+||=.++
T Consensus 145 ~~v~~~~el~~al~~a~~~------~~p~liev~~~ 174 (186)
T cd02015 145 LRVEKPEELEAALKEALAS------DGPVLLDVLVD 174 (186)
T ss_pred EEeCCHHHHHHHHHHHHhC------CCCEEEEEEeC
Confidence 3678899999999988753 66778876664
No 126
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=42.69 E-value=55 Score=24.66 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=30.4
Q ss_pred HHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcE-EEee
Q psy11786 10 LMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDM-LVEK 64 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~v-lIE~ 64 (108)
.+..+.+.| ||++| .||. -+.+|+..|++..... |...+ |++.
T Consensus 124 LL~~~a~~gkPVilk-----~G~~--~t~~e~~~Ave~i~~~-----Gn~~i~l~~r 168 (260)
T TIGR01361 124 LLKEVGKQGKPVLLK-----RGMG--NTIEEWLYAAEYILSS-----GNGNVILCER 168 (260)
T ss_pred HHHHHhcCCCcEEEe-----CCCC--CCHHHHHHHHHHHHHc-----CCCcEEEEEC
Confidence 456667889 99999 5654 5688999998887653 45454 5565
No 127
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=42.31 E-value=1.3e+02 Score=23.06 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=44.6
Q ss_pred HHHHHHHhhhcC-CeE-------EEcC-CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC-----CeEE
Q psy11786 7 FSRLMIFNSIHG-PIC-------QRLV-AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR-----PRHI 72 (108)
Q Consensus 7 ~~~~~~~~~~~g-Pv~-------vKp~-~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~-----~rei 72 (108)
.-+..+...+.| ||+ +... .||.-+. -++.++..+.++.|..+..+ |-..+++|---.. .+.+
T Consensus 118 ~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~q-grt~~~a~~~i~~A~a~e~A--GA~~ivlE~vp~~~a~~It~~l 194 (263)
T TIGR00222 118 LVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQ-GKDEEAAKKLLEDALALEEA--GAQLLVLECVPVELAAKITEAL 194 (263)
T ss_pred HHHHHHHHHHCCCCEEEecCCCceeEeecCCeeec-CCCHHHHHHHHHHHHHHHHc--CCCEEEEcCCcHHHHHHHHHhC
Confidence 334457778899 999 5443 5664444 67888889999998877553 3455666644210 1356
Q ss_pred EEEEEecCC
Q psy11786 73 EVQILGDKY 81 (108)
Q Consensus 73 evqvl~d~~ 81 (108)
.+.++|=+.
T Consensus 195 ~iP~iGIGa 203 (263)
T TIGR00222 195 AIPVIGIGA 203 (263)
T ss_pred CCCEEeecc
Confidence 666665433
No 128
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=42.22 E-value=62 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCc-EEEeecC
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDD-MLVEKDI 66 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~-vlIE~~i 66 (108)
+.++.+.+-| ||.|| +|+. -+.+|+..+.+..... |... +|.|+-+
T Consensus 115 ~LL~a~g~t~kpV~lK-----rG~~--~t~~e~~~aaeyi~~~-----Gn~~vilcERG~ 162 (264)
T PRK05198 115 DLLVAAAKTGKVVNIK-----KGQF--LAPWDMKNVVDKVREA-----GNDKIILCERGT 162 (264)
T ss_pred HHHHHHhccCCeEEec-----CCCc--CCHHHHHHHHHHHHHc-----CCCeEEEEeCCC
Confidence 4455666779 99999 7776 5678888888887765 4555 4667766
No 129
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=41.56 E-value=66 Score=22.00 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=21.7
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
..|++.++|..+++.+... +.+.+||=.+
T Consensus 143 ~~v~~~~el~~al~~a~~~------~~p~liev~i 171 (172)
T cd02004 143 ELVTTPEELKPALKRALAS------GKPALINVII 171 (172)
T ss_pred EEECCHHHHHHHHHHHHHc------CCCEEEEEEc
Confidence 4567899999999988763 6777877543
No 130
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=40.65 E-value=61 Score=22.60 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=23.5
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.++|..+++++... +.+.+||=.++
T Consensus 141 ~~v~~~~el~~al~~a~~~------~~p~liev~~~ 170 (177)
T cd02010 141 YRIESADDLLPVLERALAA------DGVHVIDCPVD 170 (177)
T ss_pred EEECCHHHHHHHHHHHHhC------CCCEEEEEEec
Confidence 4678999999999999764 67778875553
No 131
>PRK04998 hypothetical protein; Provisional
Probab=40.38 E-value=92 Score=19.48 Aligned_cols=30 Identities=3% Similarity=-0.001 Sum_probs=23.6
Q ss_pred eEEEcCCCc--eeeEE---eCCHHHHHHHHHHHhh
Q psy11786 20 ICQRLVAEV--VACEW---LLTKDAIEENFKRAGP 49 (108)
Q Consensus 20 v~vKp~~gG--~G~~i---V~~~~el~~a~~~a~~ 49 (108)
+=+||+.+| ..+++ |++.+++...++...+
T Consensus 46 ~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~ 80 (88)
T PRK04998 46 PTVKPSSKGNYHSVSITITATSIEQVETLYEELAK 80 (88)
T ss_pred ceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 448999999 55554 8999999888877665
No 132
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=40.38 E-value=55 Score=22.68 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=22.2
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
..|++.++|..+++.+... +.+.+||=.+
T Consensus 146 ~~v~~~~el~~al~~a~~~------~~p~lIev~v 174 (175)
T cd02009 146 RRVSSLDELEQALESALAQ------DGPHVIEVKT 174 (175)
T ss_pred eeCCCHHHHHHHHHHHHhC------CCCEEEEEeC
Confidence 4578999999999998763 6777777543
No 133
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=39.90 E-value=58 Score=24.06 Aligned_cols=33 Identities=12% Similarity=-0.051 Sum_probs=26.5
Q ss_pred eeeE--EeCCHHHHHHHHHHHhh-hHhhhcCCCcEEEeecCC
Q psy11786 29 VACE--WLLTKDAIEENFKRAGP-KLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 29 ~G~~--iV~~~~el~~a~~~a~~-~a~~~fgd~~vlIE~~i~ 67 (108)
.+++ .|.+.++|..+++.++. . +.+.+|+=.++
T Consensus 168 ~~~~~~~v~~~~~l~~al~~al~~~------~GP~lI~v~i~ 203 (237)
T cd02018 168 VYVARLSPALKKHFLKVVKEAISRT------DGPTFIHAYTP 203 (237)
T ss_pred CEEEEEccCCHHHHHHHHHHHHhcC------CCCEEEEEeCC
Confidence 4555 47889999999999986 5 77888888864
No 134
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=39.77 E-value=63 Score=23.06 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=22.0
Q ss_pred EeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 33 WLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 33 iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
.|++.++|.++++.+... +.+.+||=-+
T Consensus 156 ~v~~~~el~~al~~a~~~------~gp~lIeV~v 183 (205)
T cd02003 156 KVKTIEELKAALAKAKAS------DRTTVIVIKT 183 (205)
T ss_pred EECCHHHHHHHHHHHHhC------CCCEEEEEEe
Confidence 568999999999998754 5677776655
No 135
>TIGR03586 PseI pseudaminic acid synthase.
Probab=39.72 E-value=1e+02 Score=24.24 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 10 LMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
.++...+.| ||++| .||. +.+|+..|++..... |...+.+-.++
T Consensus 126 LL~~va~~gkPvils-----tG~~---t~~Ei~~Av~~i~~~-----g~~~i~LlhC~ 170 (327)
T TIGR03586 126 LIRYVAKTGKPIIMS-----TGIA---TLEEIQEAVEACREA-----GCKDLVLLKCT 170 (327)
T ss_pred HHHHHHhcCCcEEEE-----CCCC---CHHHHHHHHHHHHHC-----CCCcEEEEecC
Confidence 445556679 99999 7883 899999999887653 34456554454
No 136
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=38.61 E-value=28 Score=27.08 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=29.7
Q ss_pred cC-CeEEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEE
Q psy11786 17 HG-PICQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQIL 77 (108)
Q Consensus 17 ~g-Pv~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl 77 (108)
.+ -.+|||. .||.|+....+..++ .++..||++ .|+.|.+.
T Consensus 137 ~~~k~ViKp~dgCgge~i~~~~~~pd~-------------------~i~qEfIeG-~~lSVSL~ 180 (307)
T COG1821 137 EPKKYVIKPADGCGGEGILFGRDFPDI-------------------EIAQEFIEG-EHLSVSLS 180 (307)
T ss_pred CCceEEecccccCCcceeeccCCCcch-------------------hhHHHhcCC-cceEEEEe
Confidence 35 6799995 566888888876663 245568876 99999944
No 137
>PRK06163 hypothetical protein; Provisional
Probab=38.51 E-value=69 Score=23.18 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=22.6
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|.+.+||..+++.+... +.+.+||=.++
T Consensus 144 ~~v~~~~el~~al~~a~~~------~~p~lIeV~i~ 173 (202)
T PRK06163 144 HWAADEAHFEALVDQALSG------PGPSFIAVRID 173 (202)
T ss_pred EEeCCHHHHHHHHHHHHhC------CCCEEEEEEec
Confidence 3689999999999998754 56666665553
No 138
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.46 E-value=84 Score=25.05 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=32.0
Q ss_pred HHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcE-EEeecC
Q psy11786 10 LMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDM-LVEKDI 66 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~v-lIE~~i 66 (108)
.++.+.+.| ||++| .||. -+.+|+..|.+..... |...+ |+|.-+
T Consensus 200 LL~~va~t~kPVllk-----~G~~--~t~ee~~~A~e~i~~~-----Gn~~viL~erG~ 246 (352)
T PRK13396 200 LLKKVGAQDKPVLLK-----RGMA--ATIDEWLMAAEYILAA-----GNPNVILCERGI 246 (352)
T ss_pred HHHHHHccCCeEEEe-----CCCC--CCHHHHHHHHHHHHHc-----CCCeEEEEecCC
Confidence 456667789 99999 6665 5789999998887654 45444 556633
No 139
>KOG1199|consensus
Probab=36.26 E-value=93 Score=23.11 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=26.3
Q ss_pred HHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEE
Q psy11786 12 IFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLV 62 (108)
Q Consensus 12 ~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlI 62 (108)
+.++++| -++.-|+. |.+++|...+|+++... ||.-++++
T Consensus 48 ~vakelg~~~vf~pad-------vtsekdv~aala~ak~k----fgrld~~v 88 (260)
T KOG1199|consen 48 DVAKELGGKVVFTPAD-------VTSEKDVRAALAKAKAK----FGRLDALV 88 (260)
T ss_pred HHHHHhCCceEEeccc-------cCcHHHHHHHHHHHHhh----ccceeeee
Confidence 4556666 55555542 67889999988887665 66655444
No 140
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=35.93 E-value=69 Score=22.58 Aligned_cols=31 Identities=13% Similarity=0.211 Sum_probs=20.5
Q ss_pred eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 29 VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 29 ~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
.+.+.|++.++|..+++ +... +.+.+||=.+
T Consensus 125 ~~~~~v~~~~~l~~al~-a~~~------~~p~li~v~~ 155 (181)
T TIGR03846 125 RNVEKVADEEELRDALK-ALAM------KGPTFIHVKV 155 (181)
T ss_pred CeEEEeCCHHHHHHHHH-HHcC------CCCEEEEEEe
Confidence 44555899999999996 5542 4556655444
No 141
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=35.74 E-value=54 Score=24.62 Aligned_cols=23 Identities=4% Similarity=-0.174 Sum_probs=17.7
Q ss_pred HHHhhhcC-CeEEEcCCCceeeEEe
Q psy11786 11 MIFNSIHG-PICQRLVAEVVACEWL 34 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG~G~~iV 34 (108)
.+.-.++| +-++| ++||+|+.++
T Consensus 125 r~~L~~lgL~sf~K-TSG~kGlHv~ 148 (228)
T cd04865 125 REVLDELGLRGYPK-TSGARGLHIY 148 (228)
T ss_pred HHHHHHcCCccceE-ccCCCeEEEE
Confidence 34457799 99999 4566999986
No 142
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=35.72 E-value=75 Score=22.24 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=22.6
Q ss_pred EEeCCHHHHHHHHHHHhh-hHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGP-KLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~-~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.++|.++++.++. . +.+.+||=.++
T Consensus 144 ~~v~~~~el~~al~~a~~~~------~~p~liev~~~ 174 (183)
T cd02005 144 FRVKTEGELDEALKDALFNR------DKLSLIEVILP 174 (183)
T ss_pred EEecCHHHHHHHHHHHHhcC------CCcEEEEEEcC
Confidence 456889999999998876 3 56777776653
No 143
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=35.19 E-value=89 Score=24.39 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=33.4
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcE-EEeecC
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDM-LVEKDI 66 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~v-lIE~~i 66 (108)
+.+..+.+-| ||.|| +|+. -+.+++..+.+..... |...+ |.|+-+
T Consensus 121 dLL~a~~~tgkpV~lK-----kGq~--~t~~e~~~aaeki~~~-----GN~~viLcERG~ 168 (290)
T PLN03033 121 DLLVAAAKTGKIINIK-----KGQF--CAPSVMRNSAEKVRLA-----GNPNVMVCERGT 168 (290)
T ss_pred HHHHHHHccCCeEEeC-----CCCC--CCHHHHHHHHHHHHHc-----CCCcEEEEeCCC
Confidence 3455666789 99999 7776 6788988888887664 45554 557766
No 144
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=35.06 E-value=80 Score=22.34 Aligned_cols=33 Identities=6% Similarity=-0.041 Sum_probs=23.2
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.++|..+++++...... +.+.+||=.++
T Consensus 147 ~~v~~~~el~~al~~a~~~~~~---~~p~liev~v~ 179 (196)
T cd02013 147 ITVDKPEDVGPALQKAIAMMAE---GKTTVIEIVCD 179 (196)
T ss_pred EEECCHHHHHHHHHHHHhcCCC---CCeEEEEEEeC
Confidence 4788899999999998762110 56677766653
No 145
>PRK02047 hypothetical protein; Provisional
Probab=34.57 E-value=1.2e+02 Score=19.17 Aligned_cols=30 Identities=7% Similarity=0.106 Sum_probs=24.0
Q ss_pred eEEEcCCCc--eeeEE---eCCHHHHHHHHHHHhh
Q psy11786 20 ICQRLVAEV--VACEW---LLTKDAIEENFKRAGP 49 (108)
Q Consensus 20 v~vKp~~gG--~G~~i---V~~~~el~~a~~~a~~ 49 (108)
+=.||+.+| ..+++ |.+.+++...++...+
T Consensus 49 i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~ 83 (91)
T PRK02047 49 IEERPSSGGNYTGLTITVRATSREQLDNIYRALTG 83 (91)
T ss_pred eEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhh
Confidence 558999999 55554 7999999888887765
No 146
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=34.54 E-value=86 Score=24.90 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=32.8
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcE-EEeecCC
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDM-LVEKDIG 67 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~v-lIE~~i~ 67 (108)
+.+..+.+.| ||++| .||. -+.+|+..|++..... |...+ |+|+.+.
T Consensus 216 ~LL~~~a~~gkPVilk-----~G~~--~t~~e~~~Ave~i~~~-----Gn~~i~L~erg~s 264 (360)
T PRK12595 216 ELLKAAGRVNKPVLLK-----RGLS--ATIEEFIYAAEYIMSQ-----GNGQIILCERGIR 264 (360)
T ss_pred HHHHHHHccCCcEEEe-----CCCC--CCHHHHHHHHHHHHHC-----CCCCEEEECCccC
Confidence 4556677889 99999 6654 5788999998887653 45555 5564553
No 147
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=34.46 E-value=71 Score=21.86 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=20.3
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEee
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEK 64 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~ 64 (108)
..|++.++|.++++++... +.+.+||=
T Consensus 150 ~~v~~~~el~~al~~a~~~------~~p~vi~v 176 (178)
T cd02002 150 ERVETPEELDEALREALAE------GGPALIEV 176 (178)
T ss_pred EEeCCHHHHHHHHHHHHhC------CCCEEEEE
Confidence 4567899999999998763 56777763
No 148
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=34.42 E-value=79 Score=24.22 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=33.2
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCc-EEEeecC
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDD-MLVEKDI 66 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~-vlIE~~i 66 (108)
+.++.+.+-| ||+|| +|+. -+.+++..+.+..... |... +|.|+-+
T Consensus 107 ~LL~a~g~t~kpV~lK-----rG~~--~t~~e~l~aaeyi~~~-----Gn~~viLcERG~ 154 (258)
T TIGR01362 107 DLLVAAAKTGRIVNVK-----KGQF--LSPWDMKNVVEKVLST-----GNKNILLCERGT 154 (258)
T ss_pred HHHHHHhccCCeEEec-----CCCc--CCHHHHHHHHHHHHHc-----CCCcEEEEeCCC
Confidence 4455666779 99999 7765 4778888888887765 4554 4668776
No 149
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=34.36 E-value=2e+02 Score=22.06 Aligned_cols=60 Identities=8% Similarity=-0.156 Sum_probs=33.0
Q ss_pred cHHHHHHHhhhcC---CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHh-hhcCCCcEEEeec
Q psy11786 6 AFSRLMIFNSIHG---PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLW-LFFGKDDMLVEKD 65 (108)
Q Consensus 6 ~~~~~~~~~~~~g---Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~-~~fgd~~vlIE~~ 65 (108)
..++..+..++.| |++|.|..++-|-.++....-=-.+++....+++ +.|..-+++|..+
T Consensus 30 ~l~eLa~SIre~Gl~qPI~Vr~~p~~~~Yii~~GG~rRl~AlkeL~~et~~~r~~~Ipaivr~~ 93 (258)
T TIGR03764 30 KYDEIKASIRERGLDQPPKVTRRPGESDYIIRNGGNTRLQILKELWQETGDERFFRIHCLFKPW 93 (258)
T ss_pred HHHHHHHHHHHhCCcCCeEEEecCCCCcEEEeeCccHHHHHHHHHHHHHhhccCceeeEEEEeC
Confidence 3566667778888 9999987666564444422222344444444433 2343344555443
No 150
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=33.79 E-value=78 Score=21.69 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=21.9
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
..|++.++|.++++++... +.+.+||=.+
T Consensus 126 ~~v~~~~el~~al~~a~~~------~gp~vi~v~i 154 (157)
T cd02001 126 LSAPLLGGLGSEFAGLLAT------TGPTLLHAPI 154 (157)
T ss_pred EEcCCHHHHHHHHHHHHhC------CCCEEEEEEe
Confidence 4578999999999998763 5677776544
No 151
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=33.70 E-value=89 Score=22.13 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=24.3
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.+||+.+++.+...... .+.+.+||=.++
T Consensus 161 ~~v~~~~el~~al~~a~~~~~~--~~~p~liev~i~ 194 (202)
T cd02006 161 IRVTKPEELAAAFEQAKKLMAE--HRVPVVVEAILE 194 (202)
T ss_pred EEECCHHHHHHHHHHHHHhccc--CCCcEEEEEEec
Confidence 5689999999999998852100 056778877664
No 152
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=33.45 E-value=76 Score=21.95 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=21.7
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
..+++.++|..+++.+... +.+.+||=.+
T Consensus 144 ~~v~~~~el~~~l~~a~~~------~~p~liev~~ 172 (178)
T cd02014 144 IRVEDPDELEAALDEALAA------DGPVVIDVVT 172 (178)
T ss_pred EEeCCHHHHHHHHHHHHhC------CCCEEEEEEe
Confidence 3578899999999888764 5677777555
No 153
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=33.40 E-value=69 Score=24.47 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=25.7
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRP 69 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~ 69 (108)
..|.+.++|..++++|+.. +.+.|||=.++-+
T Consensus 172 ~~v~~~~el~~al~~Al~~------~Gp~lIeV~~~c~ 203 (277)
T PRK09628 172 ESVIDPQKLEKLLVKGFSH------KGFSFFDVFSNCH 203 (277)
T ss_pred EccCCHHHHHHHHHHHHhC------CCCEEEEEcCCCC
Confidence 4689999999999999875 6788887776443
No 154
>PRK03511 minC septum formation inhibitor; Reviewed
Probab=32.88 E-value=1.4e+02 Score=22.11 Aligned_cols=43 Identities=9% Similarity=0.143 Sum_probs=30.0
Q ss_pred CeEEEcCCCceeeEEe----CCHHHHHHHHHHHhhhHhhhcCCCcEEEe
Q psy11786 19 PICQRLVAEVVACEWL----LTKDAIEENFKRAGPKLWLFFGKDDMLVE 63 (108)
Q Consensus 19 Pv~vKp~~gG~G~~iV----~~~~el~~a~~~a~~~a~~~fgd~~vlIE 63 (108)
|+-+|-.. .|+.++ .+.++|.+.+.+-...++..|...++++.
T Consensus 5 ~v~iKg~~--~~l~vl~l~~~~~~~l~~~L~~ki~~a~~FF~~apvvld 51 (228)
T PRK03511 5 PIELKGSS--FTLSVVHLHDAEPEVIRQALEDKIAQAPAFLKNAPVVIN 51 (228)
T ss_pred cEEEEcCc--ccEEEEEcCCCCHHHHHHHHHHHHHhChHHhCCCeEEEE
Confidence 66777322 566666 45667778888888888888977777664
No 155
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=32.29 E-value=51 Score=22.58 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=19.6
Q ss_pred HHHHHHHhhhcC-CeEEEcCCCc---eeeEEe
Q psy11786 7 FSRLMIFNSIHG-PICQRLVAEV---VACEWL 34 (108)
Q Consensus 7 ~~~~~~~~~~~g-Pv~vKp~~gG---~G~~iV 34 (108)
...+.++|+++| +++|||-.|- .+++.+
T Consensus 84 ~~~il~lA~~v~adlii~pL~~e~~~~~~kli 115 (127)
T PF03686_consen 84 QPPILELAKKVGADLIIRPLGGESPPVEMKLI 115 (127)
T ss_dssp HHHHHHHHHHHT-EEEEE-BTTB---TT-EEE
T ss_pred hHHHHHHHHHhCCCEEEECCCCCCCCCceEEE
Confidence 345688999999 9999996554 455554
No 156
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.80 E-value=85 Score=23.83 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=31.3
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCc-EEEeecC
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDD-MLVEKDI 66 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~-vlIE~~i 66 (108)
+.++.+.+.| ||+|| .|+. -+.+|+..+++..... |... +|+|+.+
T Consensus 113 ~LL~~va~tgkPVilk-----~G~~--~t~~e~~~A~e~i~~~-----Gn~~i~L~eRg~ 160 (250)
T PRK13397 113 EFLKTLSHIDKPILFK-----RGLM--ATIEEYLGALSYLQDT-----GKSNIILCERGV 160 (250)
T ss_pred HHHHHHHccCCeEEEe-----CCCC--CCHHHHHHHHHHHHHc-----CCCeEEEEcccc
Confidence 3455666779 99999 6632 6788888888887653 4544 4556455
No 157
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=31.32 E-value=58 Score=24.44 Aligned_cols=23 Identities=4% Similarity=-0.155 Sum_probs=17.5
Q ss_pred HHHhhhcC-CeEEEcCCCceeeEEe
Q psy11786 11 MIFNSIHG-PICQRLVAEVVACEWL 34 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG~G~~iV 34 (108)
.+.-..+| +-++| ++||+|+.++
T Consensus 124 r~~L~~lgL~~~~K-TSG~kGlHV~ 147 (227)
T cd04862 124 RELLDELGLESFVK-TSGGKGLHVV 147 (227)
T ss_pred HHHHHHcCCccceE-ccCCCeEEEE
Confidence 34446799 99999 4566999986
No 158
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.19 E-value=1.4e+02 Score=23.50 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=31.9
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCC--cEEEeecC
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKD--DMLVEKDI 66 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~--~vlIE~~i 66 (108)
..++.+.+.| ||+++ .||. +.+|+..|++..... |.. .+.+-.+.
T Consensus 124 pLL~~~A~~gkPvilS-----tGma---tl~Ei~~Av~~i~~~-----G~~~~~i~llhC~ 171 (329)
T TIGR03569 124 PLLKKIARFGKPVILS-----TGMA---TLEEIEAAVGVLRDA-----GTPDSNITLLHCT 171 (329)
T ss_pred HHHHHHHhcCCcEEEE-----CCCC---CHHHHHHHHHHHHHc-----CCCcCcEEEEEEC
Confidence 3456667789 99999 7884 899999999888653 333 36665554
No 159
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=31.06 E-value=1.4e+02 Score=18.90 Aligned_cols=38 Identities=5% Similarity=-0.011 Sum_probs=28.9
Q ss_pred CeEEEcC-CCceeeEEeCC-HHHHHHHHHHHhhhHhhhcC
Q psy11786 19 PICQRLV-AEVVACEWLLT-KDAIEENFKRAGPKLWLFFG 56 (108)
Q Consensus 19 Pv~vKp~-~gG~G~~iV~~-~~el~~a~~~a~~~a~~~fg 56 (108)
=|.|.|. .+|+-+.+-.+ .+.|.+.++....+....||
T Consensus 17 ~V~v~p~~~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~ 56 (87)
T PF06857_consen 17 EVTVEPAESGGIEIELESSVVKQFGDQIRAVIRETLEELG 56 (87)
T ss_pred EEEEEeCCCCcEEEEEEchHHhhhHHHHHHHHHHHHHhcC
Confidence 4688997 55588888888 88888888888887554443
No 160
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=30.83 E-value=61 Score=24.39 Aligned_cols=23 Identities=4% Similarity=-0.145 Sum_probs=17.5
Q ss_pred HHHhhhcC-CeEEEcCCCceeeEEe
Q psy11786 11 MIFNSIHG-PICQRLVAEVVACEWL 34 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG~G~~iV 34 (108)
.++-.++| +-++| ++||+|+.++
T Consensus 128 r~~L~~lgL~s~~K-TSG~kGlHV~ 151 (231)
T cd04863 128 RDRLAALGLASFPK-TSGSKGLHLY 151 (231)
T ss_pred HHHHHHcCCccceE-CCCCCeEEEE
Confidence 34446799 99999 4566999986
No 161
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=30.73 E-value=60 Score=24.65 Aligned_cols=23 Identities=4% Similarity=-0.181 Sum_probs=17.5
Q ss_pred HHHhhhcC-CeEEEcCCCceeeEEe
Q psy11786 11 MIFNSIHG-PICQRLVAEVVACEWL 34 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG~G~~iV 34 (108)
.++-.++| +-++| ++||+|+.++
T Consensus 140 r~~L~~lgL~~f~K-TSG~kGlHV~ 163 (245)
T TIGR02778 140 RELLDELGLESFVK-TSGGKGLHVY 163 (245)
T ss_pred HHHHHHcCCccceE-ccCCCeEEEE
Confidence 34446799 99999 4566999986
No 162
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=30.05 E-value=46 Score=19.88 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=18.1
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV 28 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG 28 (108)
.+.+++++.|++-| |+||==.+.+
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~w 28 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADW 28 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTT
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCC
Confidence 36788889998889 9998754333
No 163
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=30.04 E-value=1.5e+02 Score=18.88 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHhhhcC-CeEEEcCCC--ceeeEEeCCHHHHHHHHHHHhh
Q psy11786 10 LMIFNSIHG-PICQRLVAE--VVACEWLLTKDAIEENFKRAGP 49 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~g--G~G~~iV~~~~el~~a~~~a~~ 49 (108)
+....+.+| |+|.|-..| |.|+..-...++|...++....
T Consensus 37 I~~LE~~lg~~Lf~R~~~g~~~~g~~lT~~G~~l~~~~~~~~~ 79 (99)
T TIGR00637 37 IRAMNNLSGEPLVERATGGKGGGGAVLTEYGQRLIQLYDLLER 79 (99)
T ss_pred HHHHHHHhCCCeEEecCCCCCCCCeeECHHHHHHHHHHHHHHH
Confidence 345568899 999997653 3677776666677555554443
No 164
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=29.73 E-value=92 Score=26.12 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=25.7
Q ss_pred eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 29 VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 29 ~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
.| ..|++.+||.++++.+... +.+.+||=.++
T Consensus 528 ~g-~~V~~~~el~~al~~a~~~------~~p~lIeV~i~ 559 (616)
T PRK07418 528 KG-MVISERDQLKDAIAEALAH------DGPVLIDVHVR 559 (616)
T ss_pred eE-EEeCCHHHHHHHHHHHHhC------CCCEEEEEEec
Confidence 55 4678999999999998864 67888887775
No 165
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=29.22 E-value=67 Score=24.06 Aligned_cols=23 Identities=4% Similarity=-0.120 Sum_probs=17.1
Q ss_pred HHHhhhcC-CeEEEcCCCceeeEEe
Q psy11786 11 MIFNSIHG-PICQRLVAEVVACEWL 34 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG~G~~iV 34 (108)
.+.-+++| +-++| ++||+|+.++
T Consensus 119 r~~L~~lgL~~f~K-TSG~kGlHV~ 142 (223)
T cd04866 119 KEILDALGLTSFVK-TSGNKGLQVY 142 (223)
T ss_pred HHHHHHcCCccceE-ccCCCeEEEE
Confidence 34446799 99999 4566888885
No 166
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=28.95 E-value=1.1e+02 Score=24.20 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=31.4
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCc-EEEeecC
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDD-MLVEKDI 66 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~-vlIE~~i 66 (108)
+.++.+.+.| ||++| .||. -+.+|+..+.+..... |... +|+|..+
T Consensus 191 ~LL~~va~~~kPViLk-----~G~~--~ti~E~l~A~e~i~~~-----GN~~viL~erG~ 238 (335)
T PRK08673 191 DLLKEVGKTNKPVLLK-----RGMS--ATIEEWLMAAEYILAE-----GNPNVILCERGI 238 (335)
T ss_pred HHHHHHHcCCCcEEEe-----CCCC--CCHHHHHHHHHHHHHc-----CCCeEEEEECCC
Confidence 3456677889 99999 5554 4677888888876543 4544 5667534
No 167
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=28.77 E-value=69 Score=24.03 Aligned_cols=23 Identities=4% Similarity=-0.162 Sum_probs=17.4
Q ss_pred HHHhhhcC-CeEEEcCCCceeeEEe
Q psy11786 11 MIFNSIHG-PICQRLVAEVVACEWL 34 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG~G~~iV 34 (108)
.+.-.++| +-++| ++||+|+.++
T Consensus 124 r~~L~~lgL~~f~K-TSG~kGlHV~ 147 (227)
T cd04861 124 RELLDELGLESFPK-TSGGKGLHVY 147 (227)
T ss_pred HHHHHHcCCccceE-ccCCCeEEEE
Confidence 34446799 99999 4566999986
No 168
>PRK05858 hypothetical protein; Provisional
Probab=28.48 E-value=1e+02 Score=25.37 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=24.7
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.+||.+++++++.. +.+.+||=.++
T Consensus 501 ~~v~~~~eL~~al~~a~~~------~~p~lIev~~~ 530 (542)
T PRK05858 501 ELVTVPAELGPALERAFAS------GVPYLVNVLTD 530 (542)
T ss_pred EEeCCHHHHHHHHHHHHhC------CCcEEEEEEEC
Confidence 5899999999999999874 67788876664
No 169
>KOG1017|consensus
Probab=27.20 E-value=1.2e+02 Score=22.87 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=20.5
Q ss_pred CCceeeEEeCCHHHHHHHHHHHhhh
Q psy11786 26 AEVVACEWLLTKDAIEENFKRAGPK 50 (108)
Q Consensus 26 ~gG~G~~iV~~~~el~~a~~~a~~~ 50 (108)
.|-.|++++++.+.++..+..+-+-
T Consensus 135 ~GNCGVSi~RSGEAMEqgLRdCCRs 159 (267)
T KOG1017|consen 135 RGNCGVSICRSGEAMEQGLRDCCRS 159 (267)
T ss_pred CCCcceEEEechHHHHHHHHHHHHH
Confidence 3338999999999999999887653
No 170
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=26.97 E-value=77 Score=23.79 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=17.5
Q ss_pred HHHhhhcC-CeEEEcCCCceeeEEe
Q psy11786 11 MIFNSIHG-PICQRLVAEVVACEWL 34 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG~G~~iV 34 (108)
.++-.++| +-++| ++||+|+.++
T Consensus 125 r~~L~~~gL~~f~K-TSG~kGlHv~ 148 (228)
T cd04864 125 RELLDELGLPSFVK-TTGSRGFHVV 148 (228)
T ss_pred HHHHHHcCCccceE-ccCCCeEEEE
Confidence 34446799 99999 4566999986
No 171
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=26.94 E-value=1.4e+02 Score=19.74 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=19.0
Q ss_pred EeCCHHHHHHHHHHHhhhHhhhcCCCcEEEe
Q psy11786 33 WLLTKDAIEENFKRAGPKLWLFFGKDDMLVE 63 (108)
Q Consensus 33 iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE 63 (108)
.|.+.++|.++++.+... +.+.+||
T Consensus 141 ~v~~~~~l~~a~~~a~~~------~~p~~i~ 165 (168)
T cd00568 141 RVEDPEDLEAALAEALAA------GGPALIE 165 (168)
T ss_pred EECCHHHHHHHHHHHHhC------CCCEEEE
Confidence 467899999999988753 5666765
No 172
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.59 E-value=1.2e+02 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=25.6
Q ss_pred CceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 27 EVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 27 gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
|+.| ..|++.+||.++++.+... +.+.+||=.++
T Consensus 505 G~~~-~~v~~~~el~~al~~a~~~------~~p~lieV~v~ 538 (563)
T PRK08527 505 GGIG-FRVTTKEEFDKALKEALES------DKVALIDVKID 538 (563)
T ss_pred CCeE-EEECCHHHHHHHHHHHHhC------CCCEEEEEEEC
Confidence 3355 4679999999999998753 66778877764
No 173
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=26.43 E-value=1.1e+02 Score=24.86 Aligned_cols=49 Identities=6% Similarity=0.058 Sum_probs=30.9
Q ss_pred C-eEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhH---hhhcCCCcEEEeecCC
Q psy11786 19 P-ICQRLVAEV--VACEWLLTKDAIEENFKRAGPKL---WLFFGKDDMLVEKDIG 67 (108)
Q Consensus 19 P-v~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a---~~~fgd~~vlIE~~i~ 67 (108)
| ||||+.+|- -|+--|++.+|+..-=++.+... +.+.--+.|+|.+-+.
T Consensus 258 PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~ 312 (403)
T TIGR02049 258 PYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY 312 (403)
T ss_pred CeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc
Confidence 5 589999998 55555899999876554444322 2222235677766654
No 174
>PF14044 NETI: NETI protein
Probab=25.97 E-value=74 Score=18.83 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=19.0
Q ss_pred CccccHHHHHHHhhhcC--Ce--EEEcC
Q psy11786 2 NKNKAFSRLMIFNSIHG--PI--CQRLV 25 (108)
Q Consensus 2 ~~~~~~~~~~~~~~~~g--Pv--~vKp~ 25 (108)
+.|+|++++++.-+.-| || +=||+
T Consensus 5 ~enETI~~CL~RM~~eGY~PvrR~EkPi 32 (57)
T PF14044_consen 5 EENETISDCLARMKKEGYMPVRRIEKPI 32 (57)
T ss_pred cCCCcHHHHHHHHHHcCCCceeeccccc
Confidence 56889999988888888 87 55664
No 175
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.87 E-value=1.2e+02 Score=25.39 Aligned_cols=32 Identities=3% Similarity=0.079 Sum_probs=25.3
Q ss_pred eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 29 VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 29 ~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
.|. .|++.+||.++++.+... +.+.+||=.++
T Consensus 523 ~~~-~v~~~~el~~al~~a~~~------~~p~lIeV~i~ 554 (595)
T PRK09107 523 VGI-RCEKPGDLDDAIQEMIDV------DKPVIFDCRVA 554 (595)
T ss_pred eEE-EECCHHHHHHHHHHHHhC------CCCEEEEEEec
Confidence 454 569999999999998764 67788887774
No 176
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=25.78 E-value=1.9e+02 Score=18.59 Aligned_cols=37 Identities=3% Similarity=-0.091 Sum_probs=28.3
Q ss_pred CeEEEcCC-CceeeEEeCCHH-HHHHHHHHHhhhHhhhc
Q psy11786 19 PICQRLVA-EVVACEWLLTKD-AIEENFKRAGPKLWLFF 55 (108)
Q Consensus 19 Pv~vKp~~-gG~G~~iV~~~~-el~~a~~~a~~~a~~~f 55 (108)
=|+|.|.. +|+-+.+-.+.+ +|...++....+....+
T Consensus 18 ~V~veP~~~~~i~i~i~SsV~~~Fg~~i~~vv~~~l~~~ 56 (92)
T PRK13253 18 MIRIAPADTQGIDIQLESSVEKQFGDQIRAVILETLAKL 56 (92)
T ss_pred EEEEEeCCCCcEEEEEEeeHHhhhHHHHHHHHHHHHHhc
Confidence 46888974 558899999888 99999988887744333
No 177
>KOG2814|consensus
Probab=25.62 E-value=1.3e+02 Score=24.04 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=32.0
Q ss_pred CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHh---hhHhhhcCCCcEEEe
Q psy11786 19 PICQRLVAEV--VACEWLLTKDAIEENFKRAG---PKLWLFFGKDDMLVE 63 (108)
Q Consensus 19 Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~---~~a~~~fgd~~vlIE 63 (108)
-+|.+|..-+ +||-++.+.+++.++++-+. .+-...+|..+++|+
T Consensus 170 s~F~~p~~~HLTvgm~~L~~dd~vq~a~e~les~~~e~~~~~~~kp~~i~ 219 (345)
T KOG2814|consen 170 SLFQGPGTFHLTVGMLKLLNDDDVQKALEILESTFQEIRIDVGEKPLFID 219 (345)
T ss_pred ccccCCceeeEEEEEEEecChHHHHHHHHHHHHHHHHHHhccCCCceeee
Confidence 4577886656 89999999999888776554 344456666666663
No 178
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=25.61 E-value=1e+02 Score=20.37 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.4
Q ss_pred CeEEEEEEEecCCCCEEEe
Q psy11786 69 PRHIEVQILGDKYGDVVHL 87 (108)
Q Consensus 69 ~reievqvl~d~~g~~~~l 87 (108)
.+||.+|++.|..|.++..
T Consensus 24 nkhiyaQvidd~~g~tlas 42 (109)
T CHL00139 24 NKHIYAQIIDDTNGKTLVA 42 (109)
T ss_pred CCeEEEEEEECCCCCEEEE
Confidence 4999999999877776654
No 179
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=24.86 E-value=3.1e+02 Score=20.82 Aligned_cols=69 Identities=12% Similarity=-0.011 Sum_probs=43.1
Q ss_pred HHHHHhhhcC-CeE----EEcC----CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC------CeEEE
Q psy11786 9 RLMIFNSIHG-PIC----QRLV----AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR------PRHIE 73 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~----vKp~----~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~------~reie 73 (108)
+..+.+..-| ||| +-|- .||.=+ .-++.+++.++++.+..+..+ |-+-+++|-- +. .+++.
T Consensus 121 ~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i-~grt~~~a~~~i~ra~a~~eA--GA~~i~lE~v-~~~~~~~i~~~l~ 196 (264)
T PRK00311 121 ETIKRLVERGIPVMGHLGLTPQSVNVLGGYKV-QGRDEEAAEKLLEDAKALEEA--GAFALVLECV-PAELAKEITEALS 196 (264)
T ss_pred HHHHHHHHCCCCEeeeecccceeecccCCeee-ecCCHHHHHHHHHHHHHHHHC--CCCEEEEcCC-CHHHHHHHHHhCC
Confidence 3345566789 998 8883 344222 457788899999998887653 3456777644 11 13556
Q ss_pred EEEEecCC
Q psy11786 74 VQILGDKY 81 (108)
Q Consensus 74 vqvl~d~~ 81 (108)
+.++|=+.
T Consensus 197 iP~igiGa 204 (264)
T PRK00311 197 IPTIGIGA 204 (264)
T ss_pred CCEEEecc
Confidence 66665433
No 180
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=24.86 E-value=2e+02 Score=18.53 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=39.4
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc-eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEE
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV-VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLV 62 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG-~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlI 62 (108)
.+.+++.++.-.+. |-+-+...+| ..++.+-..+++.+.+.+..+. |-..+++
T Consensus 39 ~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~~~~Lk~~-----GA~~Ilv 93 (100)
T TIGR03455 39 DNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNELIDKLKAA-----GARDILV 93 (100)
T ss_pred hhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHHHHHHHHc-----CCCeEEE
Confidence 44566666666677 8888876666 9999999999999998887764 4455554
No 181
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=24.57 E-value=1.9e+02 Score=21.80 Aligned_cols=39 Identities=5% Similarity=0.118 Sum_probs=31.4
Q ss_pred ccccHHHHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHH
Q psy11786 3 KNKAFSRLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRA 47 (108)
Q Consensus 3 ~~~~~~~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a 47 (108)
.|.+.+++.-..+.+| ++=|||+.| +++.++....+...
T Consensus 166 ~gAT~edv~lM~~~vg~~vgvKaSGG------Irt~eda~~~i~ag 205 (228)
T COG0274 166 GGATVEDVKLMKETVGGRVGVKASGG------IRTAEDAKAMIEAG 205 (228)
T ss_pred CCCCHHHHHHHHHHhccCceeeccCC------cCCHHHHHHHHHHh
Confidence 4567888887888899 999999877 78888887777765
No 182
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=24.22 E-value=78 Score=22.02 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=17.4
Q ss_pred ccccHHHHHHHhhhcC-CeEEE
Q psy11786 3 KNKAFSRLMIFNSIHG-PICQR 23 (108)
Q Consensus 3 ~~~~~~~~~~~~~~~g-Pv~vK 23 (108)
++-+..++.+...+.| |++|=
T Consensus 61 R~~~~~evi~~I~~~G~PviVA 82 (138)
T PF04312_consen 61 RNMSRSEVIEWISEYGKPVIVA 82 (138)
T ss_pred cCCCHHHHHHHHHHcCCEEEEE
Confidence 4567788889999999 99985
No 183
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=23.96 E-value=1.4e+02 Score=24.93 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=24.8
Q ss_pred eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 29 VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 29 ~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
.|. .|++.++|.++++.+... +.+.+||=.++
T Consensus 524 ~~~-~v~~~~el~~al~~a~~~------~~p~liev~v~ 555 (585)
T CHL00099 524 KGL-RIKSRKDLKSSLKEALDY------DGPVLIDCQVI 555 (585)
T ss_pred eEE-EeCCHHHHHHHHHHHHhC------CCCEEEEEEEC
Confidence 554 679999999999998764 66777776664
No 184
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=23.92 E-value=2.2e+02 Score=20.83 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=29.1
Q ss_pred CeEEEcCCCceeeEEeC----CHHHHHHHHHHHhhhHhhhcCCCcEEEe
Q psy11786 19 PICQRLVAEVVACEWLL----TKDAIEENFKRAGPKLWLFFGKDDMLVE 63 (108)
Q Consensus 19 Pv~vKp~~gG~G~~iV~----~~~el~~a~~~a~~~a~~~fgd~~vlIE 63 (108)
|+-+|-.. .|+.++. +.+++.+.+.+-...++..|...++.+.
T Consensus 5 ~v~iKg~~--~~l~~l~~~~~~~~~l~~~L~~kl~~a~~Ff~~~~vvld 51 (221)
T PRK04804 5 SLELKGSS--FTLSVLHLNSSDLAAVAAELDEKLAQAPQFFAGAPLVVN 51 (221)
T ss_pred cEEEEcCc--ccEEEEEcCCCCHHHHHHHHHHHHHhChhhhCCCEEEEE
Confidence 67777333 5555554 4567778888777778888877777664
No 185
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.60 E-value=1.5e+02 Score=22.42 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=28.5
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCc-EEEee
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDD-MLVEK 64 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~-vlIE~ 64 (108)
+.+..+...| ||++| .|+. -+.+++..+.+..... |... +|++.
T Consensus 125 ~LL~~~a~~gkPV~lk-----~G~~--~s~~e~~~A~e~i~~~-----Gn~~i~L~~r 170 (266)
T PRK13398 125 ELLKEVGKTKKPILLK-----RGMS--ATLEEWLYAAEYIMSE-----GNENVVLCER 170 (266)
T ss_pred HHHHHHhcCCCcEEEe-----CCCC--CCHHHHHHHHHHHHhc-----CCCeEEEEEC
Confidence 3556667899 99999 4443 3566888887665442 4544 56666
No 186
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=23.40 E-value=1.6e+02 Score=19.40 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=24.0
Q ss_pred EeCCHHHHHHHHHHHhhhHhh-hcCCCcEEEeecC
Q psy11786 33 WLLTKDAIEENFKRAGPKLWL-FFGKDDMLVEKDI 66 (108)
Q Consensus 33 iV~~~~el~~a~~~a~~~a~~-~fgd~~vlIE~~i 66 (108)
+|-+++++++.++.....|.. .+||..+||-.--
T Consensus 63 ivv~de~ve~vv~~I~~~a~TG~~GDGkIfV~pV~ 97 (112)
T PRK10665 63 VAIADDQLDEVIDIISKAAYTGKIGDGKIFVAELQ 97 (112)
T ss_pred EEEChHhHHHHHHHHHHHhccCCCCCcEEEEEEhh
Confidence 355677777777777776655 6888888885443
No 187
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=23.40 E-value=1.5e+02 Score=19.47 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=25.9
Q ss_pred eEEeCCHHHHHHHHHHHhhhHhh-hcCCCcEEEeecC
Q psy11786 31 CEWLLTKDAIEENFKRAGPKLWL-FFGKDDMLVEKDI 66 (108)
Q Consensus 31 ~~iV~~~~el~~a~~~a~~~a~~-~fgd~~vlIE~~i 66 (108)
+.+|-+++++++.++.....+.. .+||..+||-.--
T Consensus 61 ieivv~D~~v~~vv~~I~~~a~TG~~GDGkIfV~pV~ 97 (112)
T PRK10858 61 IEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVA 97 (112)
T ss_pred EEEEEChHhHHHHHHHHHHHhccCCCCCcEEEEEEhh
Confidence 34566677888888877776665 7888888885543
No 188
>PRK12474 hypothetical protein; Provisional
Probab=23.37 E-value=1.2e+02 Score=24.83 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=21.6
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEee
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEK 64 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~ 64 (108)
..|.+.+||..+++.++.. +.+.+||=
T Consensus 490 ~rv~~~~eL~~al~~a~~~------~~p~liev 516 (518)
T PRK12474 490 SRATTAEEFSAQYAAAMAQ------RGPRLIEA 516 (518)
T ss_pred EEeCCHHHHHHHHHHHHcC------CCCEEEEE
Confidence 5789999999999999763 66777763
No 189
>PRK15339 type III secretion system outer membrane pore InvG; Provisional
Probab=23.36 E-value=2.2e+02 Score=24.09 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=46.2
Q ss_pred cccHHHH-HHHhhhcC-CeEEEcCCC-c--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCc-EEEeecCCCCeEEEEEEE
Q psy11786 4 NKAFSRL-MIFNSIHG-PICQRLVAE-V--VACEWLLTKDAIEENFKRAGPKLWLFFGKDD-MLVEKDIGRPRHIEVQIL 77 (108)
Q Consensus 4 ~~~~~~~-~~~~~~~g-Pv~vKp~~g-G--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~-vlIE~~i~~~reievqvl 77 (108)
+++..++ ..++..+| |++|=|... | -|=.-..++.+|.+.+.......+ |-|.. ++|-+ ..|+.-+++
T Consensus 38 ~~~l~~vl~~fa~~~g~pvivs~~v~~~~vsG~f~~~~P~~~L~~La~~~~l~W--Y~DG~~Lyvy~----~~e~~s~~i 111 (559)
T PRK15339 38 KDSLRSFFDAMSSQLKKPVIVSKLAARKQISGNFDLHDPNALLEKLSLQLGLIW--YFDGQAIYIYD----ASEMRNAVV 111 (559)
T ss_pred CCcHHHHHHHHHHhcCCCEEECCccccceEEEEeCCCCHHHHHHHHHHHhCcEE--EecCCEEEEEc----chheEEEEE
Confidence 4555555 67889999 999999655 7 566666899999999888766543 33433 44433 345555555
Q ss_pred e
Q psy11786 78 G 78 (108)
Q Consensus 78 ~ 78 (108)
.
T Consensus 112 ~ 112 (559)
T PRK15339 112 S 112 (559)
T ss_pred e
Confidence 3
No 190
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=23.27 E-value=1.1e+02 Score=25.06 Aligned_cols=39 Identities=5% Similarity=-0.012 Sum_probs=27.5
Q ss_pred HHHHHHhhhcC-CeEEEcC------CCc-eeeEEeCCHHHHHHHHHHHhhh
Q psy11786 8 SRLMIFNSIHG-PICQRLV------AEV-VACEWLLTKDAIEENFKRAGPK 50 (108)
Q Consensus 8 ~~~~~~~~~~g-Pv~vKp~------~gG-~G~~iV~~~~el~~a~~~a~~~ 50 (108)
+.++..+++-+ ||+|-++ .|| .|| ++.+|...+.....+
T Consensus 31 eAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGm----tP~dF~~~V~~iA~~ 77 (424)
T PF08013_consen 31 EAALERAKEDDSPVLIEATSNQVNQFGGYTGM----TPADFRDFVREIADE 77 (424)
T ss_dssp HHHHHHCCCS-S-EEEEEETTTCSTT-TTTTB-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEeccccccccCCcCCC----CHHHHHHHHHHHHHH
Confidence 56678888899 9999994 688 998 788888877775544
No 191
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=23.13 E-value=1.9e+02 Score=17.72 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=28.6
Q ss_pred CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEE
Q psy11786 26 AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQ 75 (108)
Q Consensus 26 ~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievq 75 (108)
.+|+.+++|...+....-++...+.-+..|+-+..+.+ .+|++|
T Consensus 10 ~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~------~~I~lQ 53 (77)
T cd00474 10 NGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD------EVIELQ 53 (77)
T ss_pred CCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec------CEEEEe
Confidence 34588899888765555555555555666777766665 356665
No 192
>PRK08611 pyruvate oxidase; Provisional
Probab=22.63 E-value=1.3e+02 Score=25.09 Aligned_cols=30 Identities=7% Similarity=0.217 Sum_probs=24.7
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.++|.++++++... +.+.+||=.++
T Consensus 501 ~~v~~~~eL~~al~~a~~~------~~p~lIeV~vd 530 (576)
T PRK08611 501 YRVEKAEELDPAFEEALAQ------DKPVIIDVYVD 530 (576)
T ss_pred EEeCCHHHHHHHHHHHHhC------CCCEEEEEEeC
Confidence 4679999999999998764 67888887774
No 193
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=22.55 E-value=1.3e+02 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=23.5
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.+||.++++.+... +.+.+||=.++
T Consensus 501 ~~V~~~~eL~~al~~a~~~------~~p~lIev~v~ 530 (539)
T TIGR02418 501 LRVESPDQLEPTLRQAMEV------EGPVVVDIPVD 530 (539)
T ss_pred EEECCHHHHHHHHHHHHhC------CCCEEEEEEec
Confidence 4799999999999998754 66777776653
No 194
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=22.10 E-value=2.5e+02 Score=22.46 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=31.4
Q ss_pred ccHHHHHHHhhhcC-C--eEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCC---cEEEeecCCCC
Q psy11786 5 KAFSRLMIFNSIHG-P--ICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKD---DMLVEKDIGRP 69 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-P--v~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~---~vlIE~~i~~~ 69 (108)
.++..+...-+..| | |||=|++|.-+=.-+....-+...++... -|.. .++||.|+..+
T Consensus 239 ~di~~~~~~l~~~~lp~~vmVD~SH~ns~k~~~~q~~va~~v~~qi~------~G~~~I~GvMiES~l~~G 303 (344)
T TIGR00034 239 ADVAAAKKQLEKAGLPPHLMIDFSHGNSNKDHRRQPDVAEDVCEQIA------NGSKAIIGVMIESNLVEG 303 (344)
T ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCcccccchhhhHHHHHHHHHHHH------cCCccceEEEEEecCCcC
Confidence 34555555557789 9 99999986422111212111111111111 2343 79999999653
No 195
>PLN02470 acetolactate synthase
Probab=21.90 E-value=1.3e+02 Score=24.96 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=24.9
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.+||.++++.+... +.+.+||=.++
T Consensus 528 ~~v~~~~el~~al~~a~~~------~~p~lieV~i~ 557 (585)
T PLN02470 528 ARVTRKSDLREAIQKMLDT------PGPYLLDVIVP 557 (585)
T ss_pred EEECCHHHHHHHHHHHHhC------CCCEEEEEEeC
Confidence 4689999999999999764 67888888775
No 196
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.63 E-value=1.5e+02 Score=24.87 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=30.4
Q ss_pred EEEcC--CCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC
Q psy11786 21 CQRLV--AEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR 68 (108)
Q Consensus 21 ~vKp~--~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~ 68 (108)
|+|=+ .|..|.++ .+.+||+.++++++.. +.+++|+--++.
T Consensus 490 f~klAea~G~~g~~v-~~~~el~~al~~al~~------~~p~lidv~id~ 532 (550)
T COG0028 490 FVKLAEAYGAKGIRV-ETPEELEEALEEALAS------DGPVLIDVVVDP 532 (550)
T ss_pred HHHHHHHcCCeeEEe-CCHHHHHHHHHHHHhC------CCCEEEEEEecC
Confidence 66653 44466654 5999999999999986 677888777753
No 197
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=21.57 E-value=11 Score=27.24 Aligned_cols=15 Identities=13% Similarity=0.499 Sum_probs=10.8
Q ss_pred CCcEEEeecCCCCeE
Q psy11786 57 KDDMLVEKDIGRPRH 71 (108)
Q Consensus 57 d~~vlIE~~i~~~re 71 (108)
+.++|+|+|++.|-|
T Consensus 57 ~~~LFlEqYLd~piE 71 (179)
T PF12261_consen 57 QEPLFLEQYLDQPIE 71 (179)
T ss_pred CCCcchhhhcCCcHH
Confidence 356888888876655
No 198
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=21.56 E-value=1.5e+02 Score=23.10 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.3
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCc-EEEeecCC
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDD-MLVEKDIG 67 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~-vlIE~~i~ 67 (108)
+.+..+.+-| ||.|| +|+..- .+++..+.+..... |... +|.|+-+.
T Consensus 121 dLL~a~~~t~kpV~lK-----rGqf~s--~~e~~~aae~i~~~-----Gn~~vilcERG~~ 169 (281)
T PRK12457 121 DLVVAIAKTGKPVNIK-----KPQFMS--PTQMKHVVSKCREA-----GNDRVILCERGSS 169 (281)
T ss_pred HHHHHHhccCCeEEec-----CCCcCC--HHHHHHHHHHHHHc-----CCCeEEEEeCCCC
Confidence 4556667789 99999 665443 47788888887664 4555 46687764
No 199
>PF01318 Bromo_coat: Bromovirus coat protein; InterPro: IPR002009 This family consists of Bromovirus coat proteins. RNA-protein interactions stabilise many viruses and also the nucleoprotein cores of enveloped animal viruses (e.g. retroviruses). The nucleoprotein particles are frequently pleomorphic and generally unstable due to the lack of strong protein-protein interactions in their capsids. The structure is known for Cowpea chlorotic mottle virus (CCMV) []. It shows novel quaternary structure interactions based on interwoven carboxyterminal polypeptides that extend from canonical capsid beta-barrel subunits. Additional particle stability is provided by intercapsomere contacts between metal ion mediated carboxyl cages and by protein interactions with regions of ordered RNA. ; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1YC6_V 1JS9_A 1ZA7_B 1CWP_C.
Probab=21.48 E-value=30 Score=24.90 Aligned_cols=17 Identities=12% Similarity=-0.091 Sum_probs=3.6
Q ss_pred hhcCCeEEEcCCCceee
Q psy11786 15 SIHGPICQRLVAEVVAC 31 (108)
Q Consensus 15 ~~~gPv~vKp~~gG~G~ 31 (108)
+.+-||+|+|.+.|+|.
T Consensus 24 ~~~qPVIvep~asG~g~ 40 (188)
T PF01318_consen 24 KRVQPVIVEPPASGQGR 40 (188)
T ss_dssp S-----------TTCSS
T ss_pred ceecceEeecCccCCce
Confidence 44459999998888553
No 200
>PRK08322 acetolactate synthase; Reviewed
Probab=21.44 E-value=1.4e+02 Score=24.47 Aligned_cols=32 Identities=6% Similarity=0.077 Sum_probs=25.1
Q ss_pred eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 29 VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 29 ~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
.|. .|++.+||.++++.+... +.+.+||=.++
T Consensus 497 ~~~-~v~~~~eL~~al~~a~~~------~~p~lIev~v~ 528 (547)
T PRK08322 497 KGY-RVESADDLLPTLEEALAQ------PGVHVIDCPVD 528 (547)
T ss_pred eEE-EeCCHHHHHHHHHHHHhC------CCCEEEEEEec
Confidence 454 579999999999998764 67888887764
No 201
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=21.18 E-value=1.6e+02 Score=24.35 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=26.0
Q ss_pred CceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 27 EVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 27 gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
|+.|. .|++.+||..+++.+..... .+.+.+||=.++
T Consensus 521 G~~g~-~v~~~~el~~al~~a~~~~~---~~~p~lieV~v~ 557 (579)
T TIGR03457 521 GAKGV-VVDKPEDVGPALKKAIAAQA---EGKTTVIEIVCT 557 (579)
T ss_pred CCeEE-EECCHHHHHHHHHHHHhhCC---CCCcEEEEEEeC
Confidence 33565 68999999999999876311 145677777764
No 202
>PRK07064 hypothetical protein; Provisional
Probab=20.81 E-value=1.4e+02 Score=24.39 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=23.5
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.+||..+++.++.. +.+.+||=.++
T Consensus 499 ~~v~~~~eL~~al~~a~~~------~~p~lIeV~~~ 528 (544)
T PRK07064 499 WRVTSADDFEAVLREALAK------EGPVLVEVDML 528 (544)
T ss_pred EEeCCHHHHHHHHHHHHcC------CCCEEEEEEcc
Confidence 4679999999999998763 56777776663
No 203
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=20.64 E-value=1.7e+02 Score=24.52 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=25.2
Q ss_pred eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 29 VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 29 ~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
.|. .|++.+||.++++.++..+ +.+.+||=.++
T Consensus 544 ~~~-~V~~~~eL~~al~~a~~~~-----~~p~lIev~i~ 576 (612)
T PRK07789 544 VGL-RCEREEDVDAVIEKARAIN-----DRPVVIDFVVG 576 (612)
T ss_pred eEE-EECCHHHHHHHHHHHHhcC-----CCcEEEEEEEC
Confidence 555 5899999999999987631 46778877774
No 204
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=20.51 E-value=1.5e+02 Score=24.56 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=24.4
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.++|..+++.+... +.+.+||=.++
T Consensus 501 ~~v~~~~eL~~al~~a~~~------~~p~lIev~i~ 530 (574)
T PRK09124 501 IRVEKASELDGALQRAFAH------DGPALVDVVTA 530 (574)
T ss_pred EEeCCHHHHHHHHHHHHhC------CCCEEEEEEec
Confidence 4689999999999998764 67788887774
No 205
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=20.36 E-value=1.2e+02 Score=22.51 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=21.7
Q ss_pred HHHhhhcC-CeEEEcCCCc--------eeeEEeCCHH
Q psy11786 11 MIFNSIHG-PICQRLVAEV--------VACEWLLTKD 38 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG--------~G~~iV~~~~ 38 (108)
.+.+++.| ||+-+|+.|| +..+++.+.+
T Consensus 58 ~~~~~~~~i~vvRR~sGGGaV~hd~g~l~~S~i~~~~ 94 (248)
T COG0095 58 LEYVKEDGIPVVRRPSGGGAVFHDLGNLNYSVITPDE 94 (248)
T ss_pred HHHHHHcCCcEEEEcCCCceEEecCCcEEEEEEECCC
Confidence 56678899 9999999999 4566665553
No 206
>PRK07586 hypothetical protein; Validated
Probab=20.23 E-value=1.5e+02 Score=24.09 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=20.8
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEe
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVE 63 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE 63 (108)
..|++.++|..+++.++.. +.+.+||
T Consensus 486 ~~V~~~~el~~al~~a~~~------~~p~lie 511 (514)
T PRK07586 486 RRVTTAEEFADALAAALAE------PGPHLIE 511 (514)
T ss_pred EEeCCHHHHHHHHHHHHcC------CCCEEEE
Confidence 4678999999999998763 5677776
No 207
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=20.22 E-value=1.5e+02 Score=24.48 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=25.6
Q ss_pred eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 29 VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 29 ~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
.| ..|++.++|.++++.+... +.+.+||=.++
T Consensus 514 ~~-~~v~~~~eL~~al~~a~~~------~~p~lIev~v~ 545 (572)
T PRK06456 514 LG-FNVTTYEDIEKSLKSAIKE------DIPAVIRVPVD 545 (572)
T ss_pred ee-EEeCCHHHHHHHHHHHHhC------CCCEEEEEEeC
Confidence 44 3689999999999998764 67888887775
No 208
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=20.11 E-value=1.8e+02 Score=24.25 Aligned_cols=30 Identities=7% Similarity=0.070 Sum_probs=24.6
Q ss_pred EEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 32 EWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 32 ~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
..|++.+||..+++.++.. +.+++||=.++
T Consensus 517 ~~v~~~~eL~~al~~a~~~------~~p~lIeV~~~ 546 (597)
T PRK08273 517 IRVDDPEQLGAAWDEALAA------DRPVVLEVKTD 546 (597)
T ss_pred EEECCHHHHHHHHHHHHhC------CCCEEEEEEeC
Confidence 4789999999999999764 67888887764
Done!