Query psy11786
Match_columns 108
No_of_seqs 128 out of 1171
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 18:55:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrx_A Acetyl-COA carboxylase 99.9 1.6E-22 5.3E-27 165.2 10.3 98 5-106 231-333 (587)
2 3n6r_A Propionyl-COA carboxyla 99.9 3E-23 1E-27 171.5 3.8 102 5-106 139-245 (681)
3 3u9t_A MCC alpha, methylcroton 99.9 2E-23 6.9E-28 172.4 2.6 102 5-106 165-271 (675)
4 3glk_A Acetyl-COA carboxylase 99.9 5.1E-22 1.8E-26 160.6 9.8 98 5-106 215-317 (540)
5 3ouz_A Biotin carboxylase; str 99.9 3.6E-21 1.2E-25 150.5 11.4 102 5-106 143-249 (446)
6 3hbl_A Pyruvate carboxylase; T 99.8 3.3E-21 1.1E-25 166.6 3.0 101 6-106 143-248 (1150)
7 3va7_A KLLA0E08119P; carboxyla 99.8 1.5E-20 5.2E-25 163.3 3.7 102 5-106 167-273 (1236)
8 2vpq_A Acetyl-COA carboxylase; 99.8 1.3E-18 4.5E-23 135.9 11.6 102 5-106 138-244 (451)
9 2dzd_A Pyruvate carboxylase; b 99.8 2.1E-18 7.2E-23 135.1 11.9 101 5-105 144-249 (461)
10 2qf7_A Pyruvate carboxylase pr 99.8 8.7E-20 3E-24 157.9 3.7 101 6-106 159-264 (1165)
11 1ulz_A Pyruvate carboxylase N- 99.8 3.1E-18 1.1E-22 133.7 12.0 102 5-106 138-244 (451)
12 1w96_A ACC, acetyl-coenzyme A 99.8 2.3E-18 7.8E-23 138.7 11.2 98 5-106 221-323 (554)
13 2w70_A Biotin carboxylase; lig 99.8 5.8E-18 2E-22 132.1 10.9 101 6-106 140-246 (449)
14 2cqy_A Propionyl-COA carboxyla 99.6 4.4E-15 1.5E-19 94.9 5.5 74 5-78 32-108 (108)
15 3vmm_A Alanine-anticapsin liga 99.5 8.7E-15 3E-19 116.4 7.8 102 5-107 161-284 (474)
16 1a9x_A Carbamoyl phosphate syn 99.5 8.9E-14 3E-18 119.5 11.1 94 5-106 150-254 (1073)
17 1wr2_A Hypothetical protein PH 99.5 2.1E-13 7.3E-18 99.2 10.1 85 5-89 43-140 (238)
18 4fu0_A D-alanine--D-alanine li 99.5 1.5E-13 5E-18 105.1 7.8 85 8-99 167-256 (357)
19 3e5n_A D-alanine-D-alanine lig 99.4 5.9E-13 2E-17 103.3 7.7 78 9-93 189-269 (386)
20 1ehi_A LMDDL2, D-alanine:D-lac 99.4 1.2E-12 4.3E-17 100.7 9.4 77 10-92 166-245 (377)
21 3k3p_A D-alanine--D-alanine li 99.4 1.1E-12 3.9E-17 101.8 8.9 70 8-84 191-263 (383)
22 3i12_A D-alanine-D-alanine lig 99.4 1.4E-12 4.6E-17 100.1 8.6 74 9-89 170-246 (364)
23 3k5i_A Phosphoribosyl-aminoimi 99.4 2.1E-12 7.2E-17 100.3 9.2 91 6-106 148-244 (403)
24 3aw8_A PURK, phosphoribosylami 99.4 4.5E-12 1.5E-16 96.4 10.7 93 5-106 118-216 (369)
25 1vkz_A Phosphoribosylamine--gl 99.3 9.1E-12 3.1E-16 96.5 11.4 89 5-97 128-220 (412)
26 3tqt_A D-alanine--D-alanine li 99.3 3.1E-12 1.1E-16 98.9 8.6 65 10-81 171-239 (372)
27 4eg0_A D-alanine--D-alanine li 99.3 4E-12 1.4E-16 95.2 8.7 68 15-88 143-213 (317)
28 3lwb_A D-alanine--D-alanine li 99.3 1.4E-12 4.9E-17 100.6 6.3 63 13-82 183-248 (373)
29 3q2o_A Phosphoribosylaminoimid 99.3 1.5E-11 5.3E-16 94.4 11.4 79 5-91 134-216 (389)
30 2i87_A D-alanine-D-alanine lig 99.3 5.5E-12 1.9E-16 96.2 8.7 75 9-90 162-239 (364)
31 2fb9_A D-alanine:D-alanine lig 99.3 5.9E-12 2E-16 94.9 8.1 70 16-91 148-220 (322)
32 2yw2_A Phosphoribosylamine--gl 99.3 2.6E-11 8.8E-16 93.7 10.8 85 6-99 125-214 (424)
33 3eth_A Phosphoribosylaminoimid 99.3 4E-12 1.4E-16 98.0 6.2 89 6-107 102-198 (355)
34 3vot_A L-amino acid ligase, BL 99.3 1E-11 3.4E-16 96.2 7.9 92 14-107 141-244 (425)
35 3se7_A VANA; alpha-beta struct 99.2 1.4E-11 4.9E-16 93.5 7.5 63 13-82 160-225 (346)
36 3mjf_A Phosphoribosylamine--gl 99.2 5.4E-11 1.8E-15 93.1 10.9 80 5-88 129-213 (431)
37 2ip4_A PURD, phosphoribosylami 99.2 7.4E-11 2.5E-15 91.1 10.3 70 6-80 124-196 (417)
38 1kjq_A GART 2, phosphoribosylg 99.2 5.5E-11 1.9E-15 90.6 8.9 76 5-82 135-213 (391)
39 3orq_A N5-carboxyaminoimidazol 99.2 3.6E-11 1.2E-15 92.4 7.7 79 6-92 133-215 (377)
40 1a9x_A Carbamoyl phosphate syn 99.2 7.5E-11 2.6E-15 101.4 9.0 74 5-82 696-772 (1073)
41 4dim_A Phosphoribosylglycinami 99.2 1.5E-10 5.1E-15 88.6 9.8 77 5-87 131-210 (403)
42 1e4e_A Vancomycin/teicoplanin 99.2 8.6E-11 2.9E-15 88.9 8.2 61 15-82 162-225 (343)
43 2z04_A Phosphoribosylaminoimid 99.2 2.5E-11 8.5E-16 92.0 4.8 78 8-92 116-197 (365)
44 4e4t_A Phosphoribosylaminoimid 99.1 1.8E-10 6.2E-15 90.0 9.2 82 6-99 156-244 (419)
45 2xcl_A Phosphoribosylamine--gl 99.1 3.9E-10 1.3E-14 87.0 10.8 72 6-80 125-201 (422)
46 3lp8_A Phosphoribosylamine-gly 99.1 3.4E-10 1.2E-14 88.9 10.4 79 5-87 145-228 (442)
47 2yrx_A Phosphoribosylglycinami 99.1 5.4E-10 1.8E-14 87.3 11.3 73 5-80 145-222 (451)
48 2qk4_A Trifunctional purine bi 99.1 4.7E-10 1.6E-14 87.6 10.8 79 6-88 151-235 (452)
49 3ln7_A Glutathione biosynthesi 99.1 2.6E-10 8.8E-15 95.6 8.9 72 6-87 512-591 (757)
50 2pvp_A D-alanine-D-alanine lig 99.1 2E-10 6.9E-15 88.5 7.2 61 9-76 177-243 (367)
51 4ffl_A PYLC; amino acid, biosy 99.1 2E-10 6.7E-15 87.1 6.4 77 15-105 122-203 (363)
52 3r5x_A D-alanine--D-alanine li 99.1 5.1E-10 1.7E-14 82.7 8.2 60 13-79 128-190 (307)
53 2dwc_A PH0318, 433AA long hypo 99.1 4.1E-10 1.4E-14 87.3 7.9 76 6-83 144-224 (433)
54 3ln6_A Glutathione biosynthesi 99.0 9.4E-10 3.2E-14 92.0 8.0 66 7-79 508-580 (750)
55 1iow_A DD-ligase, DDLB, D-ALA\ 99.0 1.3E-09 4.4E-14 80.0 7.4 59 13-78 133-194 (306)
56 3ufx_B Succinyl-COA synthetase 98.9 2.6E-09 9E-14 83.6 8.6 84 5-88 26-118 (397)
57 2pn1_A Carbamoylphosphate synt 98.9 1.8E-09 6.2E-14 80.4 7.2 67 15-92 146-216 (331)
58 2nu8_B SCS-beta, succinyl-COA 98.9 4.6E-09 1.6E-13 82.0 8.5 84 5-88 26-126 (388)
59 3ax6_A Phosphoribosylaminoimid 98.8 4E-09 1.4E-13 80.3 5.4 64 13-88 127-194 (380)
60 2fp4_B Succinyl-COA ligase [GD 98.8 1.5E-08 5E-13 79.4 8.4 91 5-95 26-141 (395)
61 1uc8_A LYSX, lysine biosynthes 98.7 1.9E-09 6.6E-14 77.8 1.6 72 6-79 111-186 (280)
62 1gsa_A Glutathione synthetase; 98.7 5.1E-08 1.7E-12 71.3 6.7 68 6-78 143-215 (316)
63 2r85_A PURP protein PF1517; AT 98.6 2.1E-07 7.1E-12 68.9 7.7 62 15-79 123-188 (334)
64 3df7_A Putative ATP-grAsp supe 98.1 3E-06 1E-10 63.4 5.2 45 15-79 130-177 (305)
65 1i7n_A Synapsin II; synapse, p 98.1 5.9E-06 2E-10 62.7 6.7 62 13-80 147-211 (309)
66 1z2n_X Inositol 1,3,4-trisphos 98.1 6.2E-06 2.1E-10 61.0 6.4 60 7-79 122-190 (324)
67 2r7k_A 5-formaminoimidazole-4- 98.0 2.1E-05 7.1E-10 60.7 8.7 60 15-77 147-212 (361)
68 2p0a_A Synapsin-3, synapsin II 98.0 1.6E-05 5.6E-10 61.2 7.1 61 14-80 165-228 (344)
69 1pk8_A RAT synapsin I; ATP bin 98.0 1.8E-05 6.1E-10 62.6 7.1 61 14-80 260-323 (422)
70 2q7d_A Inositol-tetrakisphosph 97.8 2.9E-05 9.7E-10 59.5 6.2 52 15-79 159-216 (346)
71 2pbz_A Hypothetical protein; N 97.8 3.6E-06 1.2E-10 64.1 0.5 52 16-78 123-177 (320)
72 3mwd_A ATP-citrate synthase; A 97.3 0.00045 1.5E-08 54.5 5.9 85 4-88 37-135 (425)
73 3pff_A ATP-citrate synthase; p 96.9 0.0013 4.5E-08 55.8 5.5 84 5-88 38-135 (829)
74 3tig_A TTL protein; ATP-grAsp, 94.2 0.047 1.6E-06 42.5 4.3 55 17-80 146-212 (380)
75 3t7a_A Inositol pyrophosphate 89.1 0.062 2.1E-06 41.1 -0.5 67 14-90 141-226 (330)
76 1rwu_A Hypothetical UPF0250 pr 64.4 25 0.00084 22.4 6.1 42 8-49 51-101 (109)
77 1vli_A Spore coat polysacchari 60.6 14 0.00049 28.6 5.1 44 10-66 150-194 (385)
78 2wqp_A Polysialic acid capsule 52.2 27 0.00092 26.6 5.3 43 10-66 140-183 (349)
79 3g8r_A Probable spore coat pol 45.9 36 0.0012 25.9 5.2 33 10-50 127-160 (350)
80 2k4m_A TR8_protein, UPF0146 pr 38.4 23 0.00077 24.1 2.7 29 7-35 103-137 (153)
81 3t9z_A GLNK3, nitrogen regulat 37.7 65 0.0022 20.4 4.8 60 5-64 11-95 (118)
82 2h9z_A Hypothetical protein HP 37.3 39 0.0013 20.3 3.4 28 22-49 46-78 (86)
83 3n6x_A Putative glutathionylsp 35.2 79 0.0027 25.0 5.8 49 13-67 358-410 (474)
84 1vs1_A 3-deoxy-7-phosphoheptul 34.9 56 0.0019 23.8 4.6 45 10-66 137-183 (276)
85 3ncq_A Nitrogen regulatory pro 33.7 71 0.0024 20.3 4.5 61 4-64 10-95 (119)
86 3sz8_A 2-dehydro-3-deoxyphosph 32.8 48 0.0017 24.5 3.9 44 10-65 126-171 (285)
87 2ddx_A Beta-1,3-xylanase; glyc 31.9 83 0.0029 23.6 5.2 41 8-52 96-141 (333)
88 3nvt_A 3-deoxy-D-arabino-heptu 30.1 76 0.0026 24.3 4.8 44 9-64 240-285 (385)
89 3lmb_A Uncharacterized protein 28.7 84 0.0029 21.0 4.3 30 21-50 95-125 (165)
90 3fs2_A 2-dehydro-3-deoxyphosph 26.8 69 0.0024 23.8 3.9 44 10-65 147-192 (298)
91 1wjo_A T-plastin; CH domain, a 25.7 17 0.00057 23.7 0.3 20 5-24 72-92 (124)
92 1vr6_A Phospho-2-dehydro-3-deo 24.5 1.1E+02 0.0036 23.2 4.6 44 11-66 206-251 (350)
93 2v3g_A Endoglucanase H; beta-1 24.4 56 0.0019 23.7 3.0 45 7-51 88-142 (283)
94 4aff_A Nitrogen regulatory pro 22.8 1.1E+02 0.0037 19.2 3.8 60 5-64 11-95 (116)
95 2iru_A Putative DNA ligase-lik 22.5 68 0.0023 24.0 3.2 23 11-34 160-183 (303)
96 2pan_A Glyoxylate carboligase; 21.8 93 0.0032 24.7 4.0 37 29-68 544-580 (616)
97 3k1t_A Glutamate--cysteine lig 21.3 41 0.0014 26.5 1.8 50 19-68 278-333 (432)
No 1
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.88 E-value=1.6e-22 Score=165.21 Aligned_cols=98 Identities=23% Similarity=0.351 Sum_probs=90.8
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++++| ||||||+.|| +||++|++.++|..+++.+.+++. ++.+|||+||++++|++|++++|++
T Consensus 231 ~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~----~~~vlVEeyI~g~rei~V~vl~D~~ 306 (587)
T 3jrx_A 231 KDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIP----GSPIFLMKLAQHARHLEVQILADQY 306 (587)
T ss_dssp CSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHST----TCCEEEEECCCSCEEEEEEEEECSS
T ss_pred CCHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhcc----CCCEEEEEecCCCcEEEEEEEEcCC
Confidence 46788888999999 9999998666 999999999999999999988754 6789999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+||+|+|+| +|++|+.
T Consensus 307 G~vv~l~~rd~siqrr~qk~ie~aPa~ 333 (587)
T 3jrx_A 307 GNAVSLFGRDCSIQRRHQKIVEEAPAT 333 (587)
T ss_dssp SCEEEEEEEEEEEESSSCEEEEEESCC
T ss_pred CCEEEEeeeeccccccccceeEecCCC
Confidence 999999999999999999 9999987
No 2
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.87 E-value=3e-23 Score=171.52 Aligned_cols=102 Identities=25% Similarity=0.389 Sum_probs=39.6
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+.++++| |++|||+.|| +||++|++.++|..+++.+.+++..+||+..+|||+||++++|+++++++|++
T Consensus 139 ~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d~~ 218 (681)
T 3n6r_A 139 EDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSH 218 (681)
T ss_dssp ----------------------------------------------------------------CCSCEEEEEEEECCSS
T ss_pred CCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEeCC
Confidence 45677788889999 9999998666 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+||+|+|+| +|++|++
T Consensus 219 G~vv~l~~rd~s~qr~~~k~~e~~Pa~ 245 (681)
T 3n6r_A 219 GNGIYLGERECSIQRRNQKVVEEAPSP 245 (681)
T ss_dssp SCCEEEEEEECCCEETTEECEEEESCS
T ss_pred CCEEEEeeeecceeccCccEEEecCCC
Confidence 999999999999999999 9999986
No 3
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.87 E-value=2e-23 Score=172.38 Aligned_cols=102 Identities=25% Similarity=0.393 Sum_probs=85.4
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+.++++| |++|||+.|| +||++|++.++|..+++.+.+++..+||+..+|||+||++++|+++++++|.+
T Consensus 165 ~s~~e~~~~a~~igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~d~~ 244 (675)
T 3u9t_A 165 QDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRH 244 (675)
T ss_dssp CCTTHHHHHHHHSCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEECSS
T ss_pred CCHHHHHHHHHhCCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEEcCC
Confidence 46678888999999 9999998766 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+||+|+|+| +|++|++
T Consensus 245 G~vv~l~~rd~s~qr~~qk~ie~~Pa~ 271 (675)
T 3u9t_A 245 GHCLYLNERDCSIQRRHQKVVEEAPAP 271 (675)
T ss_dssp SCEEEEEEEECCCBSSSSBCEEEESCS
T ss_pred CCEEEEeccccceeeccceEEEECCCC
Confidence 999999999999999999 9999986
No 4
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.86 E-value=5.1e-22 Score=160.57 Aligned_cols=98 Identities=23% Similarity=0.351 Sum_probs=85.6
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.++++| |++|||+.|| +||++|++.++|..+++.+..++. ++.+|||+||++++|++|++++|++
T Consensus 215 ~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~----~~~vlVEe~I~g~rei~V~vl~d~~ 290 (540)
T 3glk_A 215 KDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIP----GSPIFLMKLAQHARHLEVQILADQY 290 (540)
T ss_dssp CSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHST----TCCEEEEECCSSEEEEEEEEEECTT
T ss_pred CCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhcc----CCCEEEEEecCCCcEEEEEEEEcCC
Confidence 46788888999999 9999998766 999999999999999999988754 6789999999988999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+|++|+|+| +|++|+.
T Consensus 291 G~vv~l~~rd~s~qr~~~k~ie~~Pa~ 317 (540)
T 3glk_A 291 GNAVSLFGRDCSIQRRHQKIVEEAPAT 317 (540)
T ss_dssp SCEEEEEEEEEEEC---CCSEEEESCT
T ss_pred CCEEEEeceeeeeeecccceEEecCCC
Confidence 999999999999999999 9999986
No 5
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.85 E-value=3.6e-21 Score=150.52 Aligned_cols=102 Identities=27% Similarity=0.452 Sum_probs=95.4
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++++| |++|||+.|| +|+++|++.++|..+++.+..++...||+..++||+||++++|+++++++|+.
T Consensus 143 ~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~d~~ 222 (446)
T 3ouz_A 143 AGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSF 222 (446)
T ss_dssp CSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTT
T ss_pred CCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCC
Confidence 46788888899999 9999998665 99999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+|++|+++| +|++|+.
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~p~~ 249 (446)
T 3ouz_A 223 GNVIHVGERDCSMQRRHQKLIEESPAI 249 (446)
T ss_dssp SCEEEEEEEEEEEEETTEEEEEEESCT
T ss_pred CCEEEEeeceeeeeecCceEEEECCCC
Confidence 999999999999999999 8999983
No 6
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.81 E-value=3.3e-21 Score=166.61 Aligned_cols=101 Identities=28% Similarity=0.544 Sum_probs=84.0
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
+.+++.++++++| |++|||+.|| +||++|++.++|..+++.+.+++..+||+..+|||+||++++|++|++++|++|
T Consensus 143 s~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~d~~G 222 (1150)
T 3hbl_A 143 SYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHG 222 (1150)
T ss_dssp SSSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEECSSS
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEEeCCC
Confidence 4556677889999 9999998766 999999999999999999999988899999999999999999999999999999
Q ss_pred CEEEecccccccccCce--eccCCCC
Q psy11786 83 DVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 83 ~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
+++++++|+|++|+|+| +|++|+.
T Consensus 223 ~vv~l~er~~s~qr~~~k~~e~~Pa~ 248 (1150)
T 3hbl_A 223 NIVHLFERDCSVQRRHQKVVEVAPSV 248 (1150)
T ss_dssp CEEEEEEEEEEEESSSCEEEEESSCS
T ss_pred CEEEEEeeccceeccCceeEEecCCC
Confidence 99999999999999999 9999983
No 7
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.80 E-value=1.5e-20 Score=163.34 Aligned_cols=102 Identities=22% Similarity=0.400 Sum_probs=37.3
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.+.++++| |++|||+.|| +||++|++.++|..+++.+++++.++|++..+|||+||++++|++|++++|++
T Consensus 167 ~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~Dg~ 246 (1236)
T 3va7_A 167 KDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGF 246 (1236)
T ss_dssp ------------------------------------------------------------------CCEEEEEEEEEESS
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEecCC
Confidence 35567778889999 9999998666 99999999999999999999988888999999999999988999999999999
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++||||+|+|+| +|++|+.
T Consensus 247 g~vv~l~~rd~s~qr~~~k~~e~~Pa~ 273 (1236)
T 3va7_A 247 GKAIAIGERDCSLQRRNQKVIEETPAP 273 (1236)
T ss_dssp SCEEEEEEEEEEEEETTEEEEEEESCS
T ss_pred ceEEEEeeeeeeeeecCcceEEEcCCC
Confidence 999999999999999999 9999985
No 8
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.78 E-value=1.3e-18 Score=135.85 Aligned_cols=102 Identities=30% Similarity=0.450 Sum_probs=91.9
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.++++| |++|||..|| +|+++|++.++|..+++.++.++...|++..++||+||++++|++++++++..
T Consensus 138 ~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~ 217 (451)
T 2vpq_A 138 KDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSY 217 (451)
T ss_dssp SCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEECTT
T ss_pred CCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEEcCC
Confidence 35677888889999 9999997655 99999999999999999998887778888999999999988999999999988
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+|++++++| .+.+|+.
T Consensus 218 G~~~~~~~~~~~~~~~~~~~~~~~P~~ 244 (451)
T 2vpq_A 218 GNVIHLGERDCTIQRRMQKLVEEAPSP 244 (451)
T ss_dssp SCEEEEEEEEEEEEETTEEEEEEESCT
T ss_pred CCEEEEeccccchhccccceEEEcCCC
Confidence 999999999999999998 7888875
No 9
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.77 E-value=2.1e-18 Score=135.15 Aligned_cols=101 Identities=37% Similarity=0.620 Sum_probs=91.7
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++++| |++|||..|+ +|+++|++.++|..+++.+..++...||+..++||+||++++|+++++++|..
T Consensus 144 ~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~ 223 (461)
T 2dzd_A 144 DGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYE 223 (461)
T ss_dssp SSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEECTT
T ss_pred CCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEEcCC
Confidence 35677888889999 9999997555 99999999999999999998887778988999999999988999999999988
Q ss_pred CCEEEecccccccccCce--eccCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPK 105 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~ 105 (108)
|+++++.+|+|++|++++ +|.+|+
T Consensus 224 G~~~~~~~~~~~~~~~~~~~~~~~P~ 249 (461)
T 2dzd_A 224 GNIVHLYERDCSVQRRHQKVVEVAPS 249 (461)
T ss_dssp CCEEEEEEEEEEEEETTEEEEEEESC
T ss_pred CCEEEEEeccccccccccceEEECCc
Confidence 999988999999999998 788887
No 10
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.77 E-value=8.7e-20 Score=157.90 Aligned_cols=101 Identities=28% Similarity=0.484 Sum_probs=40.4
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
+.+++.++++++| |++|||+.|| +||++|++.++|..+++.+++++...||+..++||+||++++|++|++++|++|
T Consensus 159 s~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D~~G 238 (1165)
T 2qf7_A 159 DMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHG 238 (1165)
T ss_dssp -------------------------------------------------------------CCCSSEEEEEEEEEECTTS
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEcCCC
Confidence 4567777888999 9999998665 999999999999999999999888889999999999999889999999999999
Q ss_pred CEEEecccccccccCce--eccCCCC
Q psy11786 83 DVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 83 ~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
+++++++|+|++|||+| +|.+|++
T Consensus 239 ~vv~l~~r~~s~~r~~~~~~e~~Pa~ 264 (1165)
T 2qf7_A 239 NVVHLFERDCSVQRRNQKVVERAPAP 264 (1165)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEESCT
T ss_pred cEEEEEeecccceecccceEEecccc
Confidence 99999999999999999 8889973
No 11
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.77 E-value=3.1e-18 Score=133.72 Aligned_cols=102 Identities=31% Similarity=0.491 Sum_probs=92.2
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.++++| |++|||..|+ +|+++|++.++|..+++.+..++...||+..++||+||++++|++++++++..
T Consensus 138 ~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~ 217 (451)
T 1ulz_A 138 KSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKH 217 (451)
T ss_dssp CCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTT
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEcCC
Confidence 35677888889999 9999997555 99999999999999999999887788988999999999988999999999988
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+|+++++++ ++.+|+.
T Consensus 218 G~~~~~~~~~~~~~~~~~~~~~~~P~~ 244 (451)
T 1ulz_A 218 GNVIHLGERDCSIQRRNQKLVEIAPSL 244 (451)
T ss_dssp SCEEEEEEEEEEEEETTEEEEEEESCS
T ss_pred CCEEEEeeeecccccccccceeECCcc
Confidence 999999999999999998 7888875
No 12
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.77 E-value=2.3e-18 Score=138.72 Aligned_cols=98 Identities=21% Similarity=0.352 Sum_probs=87.7
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.+.++++| |++|||+.|| +|+++|++.++|..+++.+..++. +..++||+||++++|+++++++|+.
T Consensus 221 ~~~~e~~~~~~~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~----~~~vlvEe~i~g~~e~sv~vl~d~~ 296 (554)
T 1w96_A 221 TSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIP----GSPIFIMKLAGRARHLEVQLLADQY 296 (554)
T ss_dssp SSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHST----TCCEEEEECCCSCEEEEEEEEECTT
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhcc----CCCEEEEEecCCCcEEEEEEEEcCC
Confidence 56778888889999 9999997555 999999999999999999887643 5789999999988999999999988
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+|++|+++| +|.+|+.
T Consensus 297 G~vv~l~~~~~~~~~~~~k~~~~~P~~ 323 (554)
T 1w96_A 297 GTNISLFGRDCSVQRRHQKIIEEAPVT 323 (554)
T ss_dssp SCEEEEEEEEEEEEETTEEEEEEESCC
T ss_pred CCEEEEeeeeeeeEeeccceeeeCCCc
Confidence 999999999999999998 8888875
No 13
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.75 E-value=5.8e-18 Score=132.11 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=90.7
Q ss_pred cHHHH-HHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRL-MIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~-~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++ .++++++| |++|||..|| +|+++|++.++|..+++.+..++...||+..++||+||++++|++++++++..
T Consensus 140 ~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~~~~~ 219 (449)
T 2w70_A 140 DDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 219 (449)
T ss_dssp SCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEEEcCC
Confidence 45667 77788999 9999997555 99999999999999999998887778888999999999988999999999988
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
|+++++++|+|+++++++ .+.+|+.
T Consensus 220 G~~~~~~~~~~~~~~~~~~~~~~~p~~ 246 (449)
T 2w70_A 220 GNAIYLAERDCSMQRRHQKVVEEAPAP 246 (449)
T ss_dssp SCEEEEEEEEEEEEETTEEEEEEESCT
T ss_pred CCEEEEeceecccccCCcceeeeCCcc
Confidence 999999999999999998 7788875
No 14
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.4e-15 Score=94.86 Aligned_cols=74 Identities=23% Similarity=0.298 Sum_probs=63.2
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEe
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILG 78 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~ 78 (108)
.+.+++...++.+| |++|||..|+ +|+.++++.++|..+++.+...+...|++..++||+||++++|++|+++|
T Consensus 32 ~~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~g 108 (108)
T 2cqy_A 32 KDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSSG 108 (108)
T ss_dssp SSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCCC
T ss_pred CCHHHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEecC
Confidence 35677777888999 9999998665 99999999999999999887766556767889999999987899988764
No 15
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=8.7e-15 Score=116.38 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=82.5
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhh-------hcCCCcEEEeecCCCCeE---
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWL-------FFGKDDMLVEKDIGRPRH--- 71 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~-------~fgd~~vlIE~~i~~~re--- 71 (108)
.+.+++.++++++| |++|||+.|| +|+++|++.++|..+++.+..++.. +| ++.++||+||++++|
T Consensus 161 ~s~ee~~~~~~~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~-~~~vlVEe~I~G~e~~~~ 239 (474)
T 3vmm_A 161 TTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTF-EAPFIAEEFLQGEYGDWY 239 (474)
T ss_dssp CSHHHHHHHHHHSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCC-SCSEEEEECCCBCHHHHC
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccC-CCeEEEEeCCCCceeeee
Confidence 35677888899999 9999998665 9999999999999999999887654 45 378999999998764
Q ss_pred --------EEEE-EEecCCCCEEEecccccccccCceeccCCCCC
Q psy11786 72 --------IEVQ-ILGDKYGDVVHLYDRDCPIYAEKISESHPKSL 107 (108)
Q Consensus 72 --------ievq-vl~d~~g~~~~l~eR~Csiq~r~q~e~~p~~~ 107 (108)
+++. ++.|+.+.++++++|+|+.|....++.+|+.+
T Consensus 240 q~~~~~~e~sv~~v~~dg~~~~v~i~~~~~~~~~~~~~~~~Pa~l 284 (474)
T 3vmm_A 240 QTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGFTETSHITPSIL 284 (474)
T ss_dssp SSSSSCSEEEEEEEEETTEEEEEEEEEECCCBTTBCCEEEESCCC
T ss_pred ecccccceeEEEEEEECCeEEEEEEEeeccCCCccceEEEECCCC
Confidence 6664 56677777788899999998222288899865
No 16
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.50 E-value=8.9e-14 Score=119.47 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=80.1
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCC--CceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVA--EVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~--gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
++.+++.++++++| |++|||+. ||.|+.+|++.++|..+++.+...+. ...++||+||++++|++++++.|..
T Consensus 150 ~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~----~~~vlvEe~I~G~~E~~v~v~~d~~ 225 (1073)
T 1a9x_A 150 HTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLIDESLIGWKEYEMEVVRDKN 225 (1073)
T ss_dssp SSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCT----TSCEEEEECCTTSEEEEEEEEECTT
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCC----CCcEEEEEccCCCeEEEEEEEEeCC
Confidence 35677888889999 99999975 44999999999999999998877632 5789999999999999999999999
Q ss_pred CCEEEecccccccccC------ce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAE------KI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r------~q--~e~~p~~ 106 (108)
|+++++ |++|+. .+ ++.+|+.
T Consensus 226 g~~v~~----~~~e~~dp~~v~~g~s~~~~Pa~ 254 (1073)
T 1a9x_A 226 DNCIIV----CSIENFDAMGIHTGDSITVAPAQ 254 (1073)
T ss_dssp CCEEEE----EEEEESSCTTSCGGGSCEEESCC
T ss_pred CCEEEE----EEEecccCCccccCcEEEEecCC
Confidence 999998 888874 34 7778873
No 17
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.48 E-value=2.1e-13 Score=99.16 Aligned_cols=85 Identities=11% Similarity=0.206 Sum_probs=71.9
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCC-----c--eeeEE-eCCHHHHHHHHHHHhhhHhhhcC---CCcEEEeecCCCCeEE
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAE-----V--VACEW-LLTKDAIEENFKRAGPKLWLFFG---KDDMLVEKDIGRPRHI 72 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~g-----G--~G~~i-V~~~~el~~a~~~a~~~a~~~fg---d~~vlIE~~i~~~rei 72 (108)
.+.+++.+.++++| |++|||..+ | .|+.+ |++.+++..+++.+.......++ ...++||+|+++++|+
T Consensus 43 ~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~ 122 (238)
T 1wr2_A 43 KTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPGREV 122 (238)
T ss_dssp SSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCCCEEE
T ss_pred CCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCCCeEE
Confidence 35677888889999 999999877 4 89998 79999999999999887665554 3679999999978999
Q ss_pred EEEEEecC-CCCEEEecc
Q psy11786 73 EVQILGDK-YGDVVHLYD 89 (108)
Q Consensus 73 evqvl~d~-~g~~~~l~e 89 (108)
+++++.|. .|+++.++.
T Consensus 123 ~v~v~~d~~~g~v~~~~~ 140 (238)
T 1wr2_A 123 IIGVTEDPQFGHAIMFGL 140 (238)
T ss_dssp EEEEEEETTTEEEEEEEE
T ss_pred EEEEEeCCCCCcEEEEec
Confidence 99999997 678877765
No 18
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.45 E-value=1.5e-13 Score=105.13 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=67.9
Q ss_pred HHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCE
Q psy11786 8 SRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDV 84 (108)
Q Consensus 8 ~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~ 84 (108)
....++++++| |+||||+.|| +|+++|++.++|..+++.++.+ +..+++|+||++ +|++|+++++....+
T Consensus 167 ~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~------~~~vlvE~~i~G-~e~~v~vl~~~~~~~ 239 (357)
T 4fu0_A 167 AAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH------DTEVIVEETING-FEVGCAVLGIDELIV 239 (357)
T ss_dssp HHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT------CSEEEEEECCCS-EEEEEEEEESSSEEE
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc------CCeEEEEEecCC-EEEEEEEEecCCceE
Confidence 34456778999 9999999877 9999999999999999999886 789999999965 999999999876443
Q ss_pred EEe--cccccccccCce
Q psy11786 85 VHL--YDRDCPIYAEKI 99 (108)
Q Consensus 85 ~~l--~eR~Csiq~r~q 99 (108)
..+ ..+.|.++++.+
T Consensus 240 ~~v~~~~~~~~~~d~~~ 256 (357)
T 4fu0_A 240 GRVDEIELSSGFFDYTE 256 (357)
T ss_dssp CCCEEEEECHHHHTSCS
T ss_pred EEEEEEEcccccccccc
Confidence 222 234566665554
No 19
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.39 E-value=5.9e-13 Score=103.27 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=66.1
Q ss_pred HHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEE
Q psy11786 9 RLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVV 85 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~ 85 (108)
++.++++.+| |+||||+.|| +|+++|++.++|..+++.++.+ +..++||+||++ +|++|.+++|+...++
T Consensus 189 ~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~I~G-~E~~v~vl~~~~~~~~ 261 (386)
T 3e5n_A 189 DVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAY------DHKVLVEAAVAG-REIECAVLGNAVPHAS 261 (386)
T ss_dssp CHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTT------CSEEEEEECCCS-EEEEEEEECSSSCEEE
T ss_pred hHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhC------CCcEEEEcCCCC-eEEEEEEEeCCCceEE
Confidence 4456678899 9999998777 9999999999999999998875 788999999986 9999999998776666
Q ss_pred Eecccccc
Q psy11786 86 HLYDRDCP 93 (108)
Q Consensus 86 ~l~eR~Cs 93 (108)
..++..|+
T Consensus 262 ~~gei~~~ 269 (386)
T 3e5n_A 262 VCGEVVVH 269 (386)
T ss_dssp EEEEECC-
T ss_pred EeEEEEeC
Confidence 66666654
No 20
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.39 E-value=1.2e-12 Score=100.69 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=64.8
Q ss_pred HHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEEE
Q psy11786 10 LMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVH 86 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~~ 86 (108)
+..+++.+| |+||||+.|| +|+++|++.++|..+++.++.+ +..++||+||++.+|++|.+++|+...++.
T Consensus 166 ~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~ 239 (377)
T 1ehi_A 166 WDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY------DYKVLIEEAVNGARELEVGVIGNDQPLVSE 239 (377)
T ss_dssp HHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT------CSCEEEEECCCCSCEEEEEEEESSSCEEEE
T ss_pred HHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc------CCcEEEEcCCCCCceEEEEEEcCCCcEEEe
Confidence 445567899 9999998766 9999999999999999998775 778999999987699999999987656666
Q ss_pred eccccc
Q psy11786 87 LYDRDC 92 (108)
Q Consensus 87 l~eR~C 92 (108)
.+++.+
T Consensus 240 ~~ei~~ 245 (377)
T 1ehi_A 240 IGAHTV 245 (377)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 665554
No 21
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.39 E-value=1.1e-12 Score=101.84 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=57.6
Q ss_pred HHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCE
Q psy11786 8 SRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDV 84 (108)
Q Consensus 8 ~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~ 84 (108)
+++.++++.+| |+||||+.|| +|+++|++.++|..+++.++.+ +..++||+||++ +|++|.+++|+...+
T Consensus 191 ~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~------~~~vlVEe~I~G-~E~~v~vl~d~~~~~ 263 (383)
T 3k3p_A 191 SKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY------DSRVLIEQGVDA-REIEVGILGNTDVKT 263 (383)
T ss_dssp HHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEEESSSCEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC------CCeEEEEcCCCC-eEEEEEEEeCCCeeE
Confidence 45667778999 9999998777 9999999999999999998876 789999999985 999999999865433
No 22
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.38 E-value=1.4e-12 Score=100.08 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=63.2
Q ss_pred HHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEE
Q psy11786 9 RLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVV 85 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~ 85 (108)
++.++++.+| |+||||+.|| +|+++|++.++|..+++.++.+ +..++||+||++ +|++|.+++|+...+.
T Consensus 170 ~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~I~G-~E~~v~vl~~~~~~~~ 242 (364)
T 3i12_A 170 SFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF------DHKVVVEQGIKG-REIECAVLGNDNPQAS 242 (364)
T ss_dssp CHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEEESSSCEEE
T ss_pred hHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc------CCcEEEEcCcCC-eEEEEEEEeCCCceEe
Confidence 4556678899 9999998777 9999999999999999998876 789999999987 9999999998765455
Q ss_pred Eecc
Q psy11786 86 HLYD 89 (108)
Q Consensus 86 ~l~e 89 (108)
..++
T Consensus 243 ~~~e 246 (364)
T 3i12_A 243 TCGE 246 (364)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 5443
No 23
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.37 E-value=2.1e-12 Score=100.27 Aligned_cols=91 Identities=15% Similarity=0.077 Sum_probs=75.5
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCC---ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAE---VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~g---G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++.++++++| |++|||..| |+|+++|++.++|..+++.. ++..++||+||++++|+++.++.|..
T Consensus 148 ~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~~~~E~sv~v~~~~~ 219 (403)
T 3k5i_A 148 TPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEAL--------KDRPLYAEKWAYFKMELAVIVVKTKD 219 (403)
T ss_dssp CHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHT--------TTSCEEEEECCCEEEEEEEEEEECSS
T ss_pred CHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhc--------CCCcEEEecCCCCCeEEEEEEEEcCC
Confidence 6778888889999 999999743 49999999999999988753 36789999999867999999999887
Q ss_pred CCEEEecccccccccCce--eccCCCC
Q psy11786 82 GDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 82 g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
| +.++.+.|.+++.++ ...+|+.
T Consensus 220 g--~~~~p~~~~~~~~g~~~~~~~Pa~ 244 (403)
T 3k5i_A 220 E--VLSYPTVETVQEDSICKLVYAPAR 244 (403)
T ss_dssp C--EEECCCEEEEEETTEEEEEEESCS
T ss_pred C--EEEeCCeeeEEeCCEEEEEEeCCC
Confidence 7 556677788888877 4557765
No 24
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.36 E-value=4.5e-12 Score=96.38 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=70.9
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCC---CceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVA---EVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~---gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
.+.+++.+.++++| |++|||.. ||+|+++|++.++|..+++.. ++..++||+||+.++|++++++.|.
T Consensus 118 ~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~--------~~~~~lvEe~i~~g~e~sv~~~~d~ 189 (369)
T 3aw8_A 118 DGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKAL--------GGRGLILEGFVPFDREVSLLAVRGR 189 (369)
T ss_dssp SSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTT--------CSSSEEEEECCCCSEEEEEEEEECT
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhc--------CCCcEEEEEcCCCCEEEEEEEEECC
Confidence 35567777888999 99999974 339999999999999887654 3678999999986699999999998
Q ss_pred CCCEEEecccccccccCce--eccCCCC
Q psy11786 81 YGDVVHLYDRDCPIYAEKI--SESHPKS 106 (108)
Q Consensus 81 ~g~~~~l~eR~Csiq~r~q--~e~~p~~ 106 (108)
.|++++++ ..+.+++.++ ...+|+.
T Consensus 190 ~G~~~~~~-~~~~~~~~~~~~~~~~p~~ 216 (369)
T 3aw8_A 190 TGEVAFYP-LVENRHWGGILRLSLAPAP 216 (369)
T ss_dssp TSCEEECC-CEEEEEETTEEEEEEESCT
T ss_pred CCCEEEEC-CeeeeeeCCEEEEEECCCC
Confidence 88887764 4456676666 4556665
No 25
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.34 E-value=9.1e-12 Score=96.53 Aligned_cols=89 Identities=10% Similarity=-0.054 Sum_probs=67.1
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCC-CcEEEeecCCCCeEEEEEEEecC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGK-DDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd-~~vlIE~~i~~~reievqvl~d~ 80 (108)
.+.+++.++++++| |++|||+.|+ +|+++|++.++|..+++.++..+ ..||+ ..++||+||+ ++|++++++.|+
T Consensus 128 ~~~~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~-~~~g~~~~vlvEe~i~-G~E~sv~~~~dg 205 (412)
T 1vkz_A 128 ETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGE-LIKGVKGPVVIDEFLA-GNELSAMAVVNG 205 (412)
T ss_dssp SSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTS-SSTTCCSCEEEEECCC-SEEEEEEEEEET
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhc-cccCCCCeEEEEECCc-CcEEEEEEEECC
Confidence 35677888888999 9999997555 99999999999999998876531 03655 4899999998 599999999875
Q ss_pred CCCEEEecccccccccC
Q psy11786 81 YGDVVHLYDRDCPIYAE 97 (108)
Q Consensus 81 ~g~~~~l~eR~Csiq~r 97 (108)
. .++.+ ...+..++.
T Consensus 206 ~-~~~~~-~~~~~~~~~ 220 (412)
T 1vkz_A 206 R-NFVIL-PFVRDYKRL 220 (412)
T ss_dssp T-EEEEC-CCCEECCEE
T ss_pred C-EEEEe-eeeEeeeec
Confidence 4 34444 333444443
No 26
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.34 E-value=3.1e-12 Score=98.93 Aligned_cols=65 Identities=23% Similarity=0.219 Sum_probs=55.9
Q ss_pred HHHHhhhcC-C-eEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 10 LMIFNSIHG-P-ICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 10 ~~~~~~~~g-P-v~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
...+++.+| | +||||+.|| +|+++|++.++|..+++.++.+ +..++||+||++ +|++|.+++++.
T Consensus 171 ~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~~v~vl~~~~ 239 (372)
T 3tqt_A 171 YQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY------DDRLMVEPRIRG-REIECAVLGNGA 239 (372)
T ss_dssp HHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT------CSCEEEEECCCS-EEEEEEEEESSS
T ss_pred HHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEECCCCC-EEEEEEEEeCCC
Confidence 345678899 9 999998777 9999999999999999998876 789999999985 999999999863
No 27
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.33 E-value=4e-12 Score=95.17 Aligned_cols=68 Identities=24% Similarity=0.250 Sum_probs=56.8
Q ss_pred hhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEEEec
Q psy11786 15 SIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLY 88 (108)
Q Consensus 15 ~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~~l~ 88 (108)
+.+| |++|||..|| +|+++|++.++|..+++.++.+ +..++||+||+.++|++|.+++|..+.++.+.
T Consensus 143 ~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~------~~~~lvEe~i~~G~E~~v~vl~~~~~~~~~i~ 213 (317)
T 4eg0_A 143 AKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATH------DKIVIVEKSIEGGGEYTACIAGDLDLPLIKIV 213 (317)
T ss_dssp HHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTTT------CSEEEEEECCCSSEEEEEEEETTCCCCCEEEE
T ss_pred HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC------CCeEEEEcCCCCCcEEEEEEECCcccceEEEe
Confidence 7899 9999998776 9999999999999999988765 78899999998459999999998776665543
No 28
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.33 E-value=1.4e-12 Score=100.62 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=57.2
Q ss_pred HhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 13 FNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 13 ~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
.++.+| |+||||+.|| +|+++|++.++|..+++.++.+ +..++||+||++ +|++|.+++++.+
T Consensus 183 ~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~~v~vl~~~~~ 248 (373)
T 3lwb_A 183 ECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH------DPKVIVEAAISG-RELECGVLEMPDG 248 (373)
T ss_dssp HHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT------CSSEEEEECCEE-EEEEEEEEECTTS
T ss_pred HHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEeCCCCC-eEEEEEEEECCCC
Confidence 367899 9999998777 9999999999999999999876 789999999985 9999999998766
No 29
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.32 E-value=1.5e-11 Score=94.38 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=67.2
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCC---ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAE---VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~g---G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
.+.+++.++++++| |++|||..| |+|+.+|++.++|..+++... +.+++||+||++.+|+++.++.|.
T Consensus 134 ~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~--------~~~~lvEe~i~g~~E~~v~~~~~~ 205 (389)
T 3q2o_A 134 QNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN--------AAECILEKWVPFEKEVSVIVIRSV 205 (389)
T ss_dssp SSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH--------HSCEEEEECCCCSEEEEEEEEECT
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC--------CCCEEEEecccCceEEEEEEEEcC
Confidence 35677888889999 999999866 399999999999999887642 468999999998899999999998
Q ss_pred CCCEEEecccc
Q psy11786 81 YGDVVHLYDRD 91 (108)
Q Consensus 81 ~g~~~~l~eR~ 91 (108)
.|++.+++-.+
T Consensus 206 ~G~~~~~~~~e 216 (389)
T 3q2o_A 206 SGETKVFPVAE 216 (389)
T ss_dssp TCCEEECCCEE
T ss_pred CCCEEEecCee
Confidence 88888876555
No 30
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.32 E-value=5.5e-12 Score=96.23 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=61.1
Q ss_pred HHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEE
Q psy11786 9 RLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVV 85 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~ 85 (108)
++..+++.+| |++|||+.|| +|+++|++.++|..+++.++.+ +..++||+||++ +|++|.+++++.+.++
T Consensus 162 ~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~------~~~~lvEe~I~G-~E~~v~vl~~~~~~~~ 234 (364)
T 2i87_A 162 ILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQF------DRKLVIEQGVNA-REIEVAVLGNDYPEAT 234 (364)
T ss_dssp HHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTT------CSEEEEEECCCC-EEEEEEEEESSSCEEC
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCeEEEEeCccC-eEEEEEEEcCCCcEEe
Confidence 3455668899 9999998776 9999999999999999988764 788999999986 9999999998654343
Q ss_pred Eeccc
Q psy11786 86 HLYDR 90 (108)
Q Consensus 86 ~l~eR 90 (108)
..++.
T Consensus 235 ~~~e~ 239 (364)
T 2i87_A 235 WPGEV 239 (364)
T ss_dssp CCEEE
T ss_pred eeEEE
Confidence 33333
No 31
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.30 E-value=5.9e-12 Score=94.86 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=59.9
Q ss_pred hcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEEEecccc
Q psy11786 16 IHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRD 91 (108)
Q Consensus 16 ~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~~l~eR~ 91 (108)
.+| |++|||+.|| +|+++|++.++|..+++.++.+ +..++||+||++++|++|.+++++.++++..++..
T Consensus 148 ~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~ 220 (322)
T 2fb9_A 148 PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFRY------DEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVR 220 (322)
T ss_dssp CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTT------CSEEEEEECCSSCEEEEEEEESSSSCEEEEEEEEE
T ss_pred ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCeEEEEeCCCCCeeEEEEEEeCCCceEeeeEEEe
Confidence 689 9999998777 9999999999999999998775 78899999998779999999988765565555443
No 32
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.28 E-value=2.6e-11 Score=93.70 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=65.7
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCC--CcEEEeecCCCCeEEEEEEEecC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGK--DDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd--~~vlIE~~i~~~reievqvl~d~ 80 (108)
+.+++.+.++++| |++|||..|+ +|+++|++.++|..+++.+... ..||+ ..++||+||++ +|+.+.++.|
T Consensus 125 ~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~g-~E~sv~~~~~- 200 (424)
T 2yw2_A 125 DFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNK--KIFGKSSERVVIEEFLEG-EEASYIVMIN- 200 (424)
T ss_dssp CHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEE-
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-cEEEEEEEEc-
Confidence 5567777888999 9999997554 9999999999999999888663 33553 68999999985 8999999976
Q ss_pred CCCEEEecccccccccCce
Q psy11786 81 YGDVVHLYDRDCPIYAEKI 99 (108)
Q Consensus 81 ~g~~~~l~eR~Csiq~r~q 99 (108)
|+.++. .+++++++
T Consensus 201 -G~~~~~----~~~~~~~~ 214 (424)
T 2yw2_A 201 -GDRYVP----LPTSQDHK 214 (424)
T ss_dssp -TTEEEE----CCCBEECC
T ss_pred -CCEEEe----ecceeecc
Confidence 444444 24455554
No 33
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.28 E-value=4e-12 Score=98.03 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=68.9
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc---eeeEEeCC--HHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV---VACEWLLT--KDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG---~G~~iV~~--~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
+.+++.+.++++| |++|||+.+| +|+++|++ .+||..++ |+ .++||+||+..+|+++.++.|
T Consensus 102 ~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~----------~~--~vivEe~I~~~~Eisv~v~~~ 169 (355)
T 3eth_A 102 ERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC----------YG--ECIVEQGINFSGEVSLVGARG 169 (355)
T ss_dssp CGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG----------TT--TEEEEECCCCSEEEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh----------hC--CEEEEEccCCCcEEEEEEEEc
Confidence 4566777889999 9999998653 99999999 99987732 33 699999999789999999999
Q ss_pred CCCCEEEecccccccccCce-ecc-CCCCC
Q psy11786 80 KYGDVVHLYDRDCPIYAEKI-SES-HPKSL 107 (108)
Q Consensus 80 ~~g~~~~l~eR~Csiq~r~q-~e~-~p~~~ 107 (108)
..|++.+++-. +.+|+.++ .++ +|+.+
T Consensus 170 ~~G~~~~~p~~-e~~~~~g~~~~~~~pa~l 198 (355)
T 3eth_A 170 FDGSTVFYPLT-HNLHQDGILRTSVAFPQA 198 (355)
T ss_dssp TTSCEEECCCE-EEEEETTEEEEEEECSSC
T ss_pred CCCCEEEECCE-EEEeeCCeEEEEECCCCC
Confidence 88888776543 34666666 443 45543
No 34
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.27 E-value=1e-11 Score=96.18 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=69.6
Q ss_pred hhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhh-----hcCCCcEEEeecCCCCeEEEEEEEecCCCC--
Q psy11786 14 NSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWL-----FFGKDDMLVEKDIGRPRHIEVQILGDKYGD-- 83 (108)
Q Consensus 14 ~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~-----~fgd~~vlIE~~i~~~reievqvl~d~~g~-- 83 (108)
+..+| |++|||+.|+ +|+++|++.++|..+++.+...... ..++..+++|+|+++ +|++|.++.+. |+
T Consensus 141 ~~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~e~sv~~~~~~-g~~~ 218 (425)
T 3vot_A 141 NRKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG-PEFAIETLSIQ-GNVH 218 (425)
T ss_dssp TCCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS-CEEEEEEEEET-TEEE
T ss_pred HhhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC-cEEEEEEEEeC-CcEE
Confidence 36799 9999998666 9999999999999999988765421 335678999999986 89999998753 44
Q ss_pred EEEecccccccccCce--eccCCCCC
Q psy11786 84 VVHLYDRDCPIYAEKI--SESHPKSL 107 (108)
Q Consensus 84 ~~~l~eR~Csiq~r~q--~e~~p~~~ 107 (108)
++.+.++.|+-+...+ ...+|+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~Pa~l 244 (425)
T 3vot_A 219 VLSIGYKGNSKGPFFEEGVYIAPAQL 244 (425)
T ss_dssp EEEEEEEECCCCSBCCCCEEEESCCC
T ss_pred EEeEEEEeccCCCccccceEeecccC
Confidence 4456678888887766 56677765
No 35
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.24 E-value=1.4e-11 Score=93.47 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=56.0
Q ss_pred HhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 13 FNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 13 ~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
.+..+| |++|||+.|| +|+++|++.++|..+++.++.+ +..++||+||++ +|++|.++++..+
T Consensus 160 ~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEe~I~G-~E~~v~vl~~~~~ 225 (346)
T 3se7_A 160 PTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREY------DSKVLIEEAVIG-TEIGCAVMGNGPE 225 (346)
T ss_dssp CTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTT------CSEEEEEECCCS-EEEEEEEEEETTE
T ss_pred HHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhC------CCcEEEEeCcCC-EEEEEEEEecCCC
Confidence 457899 9999998776 9999999999999999998875 789999999985 9999999988643
No 36
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.24 E-value=5.4e-11 Score=93.14 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=65.8
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCC--CcEEEeecCCCCeEEEEEEEec
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGK--DDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd--~~vlIE~~i~~~reievqvl~d 79 (108)
++.+++.++++++| |++|||..++ +|+.++++.+++..+++.+... ..||+ ..++||+||++ +|+++.++.|
T Consensus 129 ~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~--~~~g~~~~~vlvEe~i~G-~E~sv~~~~d 205 (431)
T 3mjf_A 129 TDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAG--NAFGDAGHRIVVEEFLDG-EEASFIVMVD 205 (431)
T ss_dssp SCHHHHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTT--HHHHCCCCCEEEEECCCS-EEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccccCCCCeEEEEEeeCC-cEEEEEEEEc
Confidence 35677888889999 9999997444 9999999999999999988742 34553 48999999985 9999999988
Q ss_pred CCCCEEEec
Q psy11786 80 KYGDVVHLY 88 (108)
Q Consensus 80 ~~g~~~~l~ 88 (108)
+. ++++++
T Consensus 206 g~-~~~~~~ 213 (431)
T 3mjf_A 206 GE-NVLPMA 213 (431)
T ss_dssp SS-CEEECC
T ss_pred CC-EEEEEE
Confidence 75 677764
No 37
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.22 E-value=7.4e-11 Score=91.06 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=58.3
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
+.+++.++++.+| |++|||..|+ +|+++|++.++|..+++.+.. .+|+ ..++||+||++ +|+.+.++.|+
T Consensus 124 ~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~---~~~~-~~~lvEe~i~g-~E~sv~~~~~G 196 (417)
T 2ip4_A 124 EPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILN---RAEG-GEVVVEEYLEG-EEATVLALTDG 196 (417)
T ss_dssp SHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTT---SSSC-CCEEEEECCCS-CEEEEEEEESS
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHh---hccC-CeEEEEECccC-cEEEEEEEEeC
Confidence 5567777888999 9999997555 999999999999999988762 2354 78999999985 89999999753
No 38
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.20 E-value=5.5e-11 Score=90.61 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=61.7
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++++| |++|||..|+ +|+++|++.++|..+++.+...+.. ++..++||+||++++|+.+.++.+..
T Consensus 135 ~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 135 DSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRA--GAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp SSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGG--GCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhccc--CCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 34567777888999 9999998655 9999999999999999988765321 25789999999866999999998755
Q ss_pred C
Q psy11786 82 G 82 (108)
Q Consensus 82 g 82 (108)
|
T Consensus 213 g 213 (391)
T 1kjq_A 213 G 213 (391)
T ss_dssp E
T ss_pred C
Confidence 4
No 39
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.20 E-value=3.6e-11 Score=92.37 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=65.2
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCC---ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAE---VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~g---G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
+.+++.++++++| |++|||..| |+|+.+|++.++|..+++.+. +.++++|+||++.+|+++.++.+..
T Consensus 133 ~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~--------~~~~ivEe~i~g~~E~sv~~~~~~~ 204 (377)
T 3orq_A 133 ESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE--------TSECVAEKYLNIKKEVSLTVTRGNN 204 (377)
T ss_dssp SSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT--------TSCEEEEECCCEEEEEEEEEEECGG
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC--------CCcEEEEccCCCCEEEEEEEEEeCC
Confidence 4456777888999 999999854 499999999999999887653 3679999999877999999997767
Q ss_pred CCEEEeccccc
Q psy11786 82 GDVVHLYDRDC 92 (108)
Q Consensus 82 g~~~~l~eR~C 92 (108)
|++.+++-.+.
T Consensus 205 g~~~~~~~~e~ 215 (377)
T 3orq_A 205 NQITFFPLQEN 215 (377)
T ss_dssp GCEEECCCEEE
T ss_pred CCEEEECCEeE
Confidence 78877765553
No 40
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.17 E-value=7.5e-11 Score=101.39 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=55.4
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCC--ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAE--VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~g--G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++++| |++|||+.| |+||++|++.++|..+++.+... +++.+++||+||++.+|++|+++.|+.
T Consensus 696 ~s~eea~~~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~----~~~~~vlvEefI~g~~E~~V~~l~d~~ 771 (1073)
T 1a9x_A 696 TAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSV----SNDAPVLLDHFLDDAVEVDVDAICDGE 771 (1073)
T ss_dssp CSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC------------EEEBCCTTCEEEEEEEEECSS
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEccCCCcEEEEEEEEECC
Confidence 45678888899999 999999754 49999999999999999987654 236789999999997899999999875
Q ss_pred C
Q psy11786 82 G 82 (108)
Q Consensus 82 g 82 (108)
+
T Consensus 772 ~ 772 (1073)
T 1a9x_A 772 M 772 (1073)
T ss_dssp C
T ss_pred e
Confidence 4
No 41
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.17 E-value=1.5e-10 Score=88.62 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=60.9
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCC
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKY 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~ 81 (108)
.+.+++.++++.+| |++|||..|+ +|+++|++.++|..+++.+...+. +..++||+||++ .|+.+.++.. +
T Consensus 131 ~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~----~~~~lvEe~i~g-~e~sv~~~~~-~ 204 (403)
T 4dim_A 131 RNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTK----RDYCIVEEFIEG-YEFGAQAFVY-K 204 (403)
T ss_dssp CSHHHHHHHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCS----SSCCEEEECCCS-EEEEEEEEEE-T
T ss_pred CCHHHHHHHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCc----CCcEEEEEccCC-cEEEEEEEEE-C
Confidence 35677888889999 9999998665 999999999999999999887642 578999999986 8999998863 3
Q ss_pred CCEEEe
Q psy11786 82 GDVVHL 87 (108)
Q Consensus 82 g~~~~l 87 (108)
|++..+
T Consensus 205 g~~~~~ 210 (403)
T 4dim_A 205 NDVLFV 210 (403)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 555443
No 42
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.16 E-value=8.6e-11 Score=88.85 Aligned_cols=61 Identities=11% Similarity=0.242 Sum_probs=54.4
Q ss_pred hhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCC
Q psy11786 15 SIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYG 82 (108)
Q Consensus 15 ~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g 82 (108)
+.+| |++|||+.|| +|+++|++.++|..+++.++.+ +..++||+||++ +|++|.++++..+
T Consensus 162 ~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~------~~~~lvEe~I~G-~E~~v~vl~~~~~ 225 (343)
T 1e4e_A 162 ATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY------DSKILIEQAVSG-CEVGCAVLGNSAA 225 (343)
T ss_dssp GGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT------CSSEEEEECCCS-EEEEEEEEEETTC
T ss_pred hccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEEeCcCC-eEEEEEEEeCCCC
Confidence 6789 9999998766 9999999999999999988765 788999999985 9999999988654
No 43
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.15 E-value=2.5e-11 Score=92.01 Aligned_cols=78 Identities=8% Similarity=0.029 Sum_probs=35.0
Q ss_pred HHHHHHhhhcC-CeEEEcCC---CceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCC
Q psy11786 8 SRLMIFNSIHG-PICQRLVA---EVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGD 83 (108)
Q Consensus 8 ~~~~~~~~~~g-Pv~vKp~~---gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~ 83 (108)
+++.++++++| |++|||.. ||+|+.++++.++|..+++..+ ++..++||+||++++|+++.++.|..|+
T Consensus 116 ~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~-------~~~~~lvEe~i~~g~e~sv~~~~d~~G~ 188 (365)
T 2z04_A 116 DEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHD-------KEESFIIEEFVKFEAEISCIGVRDREGK 188 (365)
T ss_dssp ------------CEEEECC-------------------------------------CEEEECCCCSEEEEEEEEECTTCC
T ss_pred HHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhc-------cCCCEEEEccCCCCEEEEEEEEECCCCC
Confidence 45556678899 99999974 4499999999999999887654 2578999999986699999999988888
Q ss_pred EEEeccccc
Q psy11786 84 VVHLYDRDC 92 (108)
Q Consensus 84 ~~~l~eR~C 92 (108)
+++++-.++
T Consensus 189 ~~~~~~~~~ 197 (365)
T 2z04_A 189 TYFYPQPFN 197 (365)
T ss_dssp EEECCEEEE
T ss_pred EEEECCEEE
Confidence 888766554
No 44
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.14 E-value=1.8e-10 Score=90.03 Aligned_cols=82 Identities=10% Similarity=-0.015 Sum_probs=64.3
Q ss_pred cHHHHHHHhhh----cCCeEEEcC-CCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEe
Q psy11786 6 AFSRLMIFNSI----HGPICQRLV-AEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILG 78 (108)
Q Consensus 6 ~~~~~~~~~~~----~gPv~vKp~-~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~ 78 (108)
+.+++.+.+++ +.|++|||. .|+ +|+++|++.++|..+++.. ++.+++||+||++++|+++.++.
T Consensus 156 ~~~e~~~~~~~~~~~~~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~~~~Eisv~v~~ 227 (419)
T 4e4t_A 156 SAAALAALDDAALDAVLPGILKTARLGYDGKGQVRVSTAREARDAHAAL--------GGVPCVLEKRLPLKYEVSALIAR 227 (419)
T ss_dssp SHHHHHTSCHHHHHTTCSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT--------TTCCEEEEECCCEEEEEEEEEEE
T ss_pred CHHHHHHHHHhhccccCCEEEEecCCCCCCCceEEECCHHHHHHHHHhc--------CCCcEEEeecCCCCeEEEEEEEE
Confidence 44566555555 469999998 333 9999999999999988653 36789999999877999999999
Q ss_pred cCCCCEEEecccccccccCce
Q psy11786 79 DKYGDVVHLYDRDCPIYAEKI 99 (108)
Q Consensus 79 d~~g~~~~l~eR~Csiq~r~q 99 (108)
|..|++.+++ .++++++
T Consensus 228 ~~~G~~~~~~----~~e~~~~ 244 (419)
T 4e4t_A 228 GADGRSAAFP----LAQNVHH 244 (419)
T ss_dssp CTTSCEEECC----CEEEEEE
T ss_pred cCCCCEEEEe----CeEEEee
Confidence 9888888774 2455544
No 45
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.13 E-value=3.9e-10 Score=87.00 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=59.5
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcC--CCcEEEeecCCCCeEEEEEEEecC
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFG--KDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fg--d~~vlIE~~i~~~reievqvl~d~ 80 (108)
+.+++.+.++.+| |++|||..|+ +|+.++++.+++..+++.+... ..|| ...++||+||++ +|+.+.++.|+
T Consensus 125 ~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~g-~E~sv~~~~dG 201 (422)
T 2xcl_A 125 SFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLED--EKFGDASASVVIEEYLSG-EEFSLMAFVKG 201 (422)
T ss_dssp CHHHHHHHHHHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEET
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCcC-cEEEEEEEEcC
Confidence 5567777888999 9999998655 9999999999999999887652 2344 368999999984 99999999864
No 46
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.13 E-value=3.4e-10 Score=88.90 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=64.1
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcC--CCcEEEeecCCCCeEEEEEEEec
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFG--KDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fg--d~~vlIE~~i~~~reievqvl~d 79 (108)
++.+++.++++++| |++|||..++ +|+.++++.+++..+++.+... ..|| ...++||+||++ +|+++.++.|
T Consensus 145 ~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~--~~~g~~~~~vlvEe~i~G-~E~sv~~~~d 221 (442)
T 3lp8_A 145 VDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVH--HKFGEAGCAIIIEEFLEG-KEISFFTLVD 221 (442)
T ss_dssp SSHHHHHHHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhh--cccCCCCCeEEEEEeecC-cEEEEEEEEC
Confidence 35677888889999 9999997444 9999999999999999988742 2354 367999999985 9999999987
Q ss_pred CCCCEEEe
Q psy11786 80 KYGDVVHL 87 (108)
Q Consensus 80 ~~g~~~~l 87 (108)
+. +++.+
T Consensus 222 g~-~~~~~ 228 (442)
T 3lp8_A 222 GS-NPVIL 228 (442)
T ss_dssp SS-CEEEE
T ss_pred CC-eEEEe
Confidence 64 55555
No 47
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.12 E-value=5.4e-10 Score=87.33 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=59.0
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCC--CcEEEeecCCCCeEEEEEEEec
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGK--DDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd--~~vlIE~~i~~~reievqvl~d 79 (108)
.+.+++.++++.+| |++|||..|+ +|+.+|++.+++..+++.+... ..||+ ..++||+||++ +|+.+.++.|
T Consensus 145 ~~~~~~~~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~G-~E~sv~~~~d 221 (451)
T 2yrx_A 145 TSYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVD--GQFGTAGSQVVIEEYLEG-EEFSFMAFVN 221 (451)
T ss_dssp SCHHHHHHHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHH--SCCBTTBCCEEEEECCCS-EEEEEEEEEE
T ss_pred CCHHHHHHHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhc--cccCCCCCeEEEEECCcC-cEEEEEEEEc
Confidence 35567777888999 9999997555 9999999999999999887653 23553 68999999985 8999999976
Q ss_pred C
Q psy11786 80 K 80 (108)
Q Consensus 80 ~ 80 (108)
+
T Consensus 222 G 222 (451)
T 2yrx_A 222 G 222 (451)
T ss_dssp T
T ss_pred C
Confidence 4
No 48
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.12 E-value=4.7e-10 Score=87.59 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=60.1
Q ss_pred cHHHHHHHhhhcC-C-eEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCC--CcEEEeecCCCCeEEEEEEEec
Q psy11786 6 AFSRLMIFNSIHG-P-ICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGK--DDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 6 ~~~~~~~~~~~~g-P-v~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd--~~vlIE~~i~~~reievqvl~d 79 (108)
+.+++.+.++.+| | ++|||..|+ +|+++|++.++|..+++.+... ..||+ ..++||+||++ +|+.+.++.|
T Consensus 151 ~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~G-~E~sv~~~~d 227 (452)
T 2qk4_A 151 KPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQE--KAFGAAGETIVIEELLDG-EEVSCLCFTD 227 (452)
T ss_dssp SHHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC---------CCEEEEECCCS-EEEEEEEEEC
T ss_pred CHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CeEEEEEEEC
Confidence 4567777888999 9 999997554 9999999999999999887663 23553 68999999984 9999999975
Q ss_pred CCCCEEEec
Q psy11786 80 KYGDVVHLY 88 (108)
Q Consensus 80 ~~g~~~~l~ 88 (108)
+. .+++++
T Consensus 228 G~-~~~~~~ 235 (452)
T 2qk4_A 228 GK-TVAPMP 235 (452)
T ss_dssp SS-CEEECC
T ss_pred CC-EEEEcc
Confidence 33 355553
No 49
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.10 E-value=2.6e-10 Score=95.55 Aligned_cols=72 Identities=8% Similarity=0.179 Sum_probs=59.9
Q ss_pred cHHHHHHHh-hhcC-CeEEEcCCCc--eeeEEe----CCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEE
Q psy11786 6 AFSRLMIFN-SIHG-PICQRLVAEV--VACEWL----LTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQIL 77 (108)
Q Consensus 6 ~~~~~~~~~-~~~g-Pv~vKp~~gG--~G~~iV----~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl 77 (108)
+.+++.+.+ +.+| |++|||..|| +||+++ ++.+++..+++.++.+ +..++||+||++ +|++|.|+
T Consensus 512 ~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~------~~~vlVEefI~G-~Ei~v~Vl 584 (757)
T 3ln7_A 512 SLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE------DKEVMVEDYLVG-TEYRFFVL 584 (757)
T ss_dssp CHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH------CSSEEEEECCCS-EEEEEEEE
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc------CCcEEEEEcCCC-cEEEEEEE
Confidence 456665555 7899 9999998766 999999 8999999999988765 778999999986 99999999
Q ss_pred ecCCCCEEEe
Q psy11786 78 GDKYGDVVHL 87 (108)
Q Consensus 78 ~d~~g~~~~l 87 (108)
++ +++..
T Consensus 585 gg---kvvaa 591 (757)
T 3ln7_A 585 GD---ETLAV 591 (757)
T ss_dssp TT---EEEEE
T ss_pred CC---EEEEE
Confidence 75 45544
No 50
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.08 E-value=2e-10 Score=88.47 Aligned_cols=61 Identities=10% Similarity=0.039 Sum_probs=53.0
Q ss_pred HHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeE---EEEEE
Q psy11786 9 RLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRH---IEVQI 76 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~re---ievqv 76 (108)
++.+ ++.+| |+||||+.|| +|+++|++.++|..+++.++.+ +..++||+||++.+| +++.+
T Consensus 177 ~~~~-~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~------~~~vlVEe~I~G~~E~svi~v~v 243 (367)
T 2pvp_A 177 NALD-LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEY------SKEVLIEPFIQGVKEYNLAGCKI 243 (367)
T ss_dssp GHHH-HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTT------CSCEEEEECCTTCEEEEEEEEEE
T ss_pred HHHH-HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeCCCCCceeeEEEEEE
Confidence 3444 67899 9999998777 9999999999999999998775 789999999986699 88887
No 51
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.07 E-value=2e-10 Score=87.11 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=59.4
Q ss_pred hhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEEEecccc
Q psy11786 15 SIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRD 91 (108)
Q Consensus 15 ~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~~l~eR~ 91 (108)
..+| |++|||+.|| +|+++|++.+++.. .+..+++|+|+.+ +|+++++++|+.+.+++...++
T Consensus 122 ~~ig~P~vvKp~~g~g~~gv~~v~~~~~~~~-------------~~~~~~~ee~i~g-~e~sv~~~~d~~~~~~~~~~~~ 187 (363)
T 4ffl_A 122 RPSKPPYFVKPPCESSSVGARIIYDDKDLEG-------------LEPDTLVEEYVEG-EVVSLEVVGDGSHFAVVKETLV 187 (363)
T ss_dssp SCSSSCEEEECSSCCTTTTCEEEC------C-------------CCTTCEEEECCCS-EEEEEEEEEESSCEEECCCEEE
T ss_pred eecCCCEEEEECCCCCCcCeEEeccHHHhhh-------------hccchhhhhhccC-cEEEEEEEEECCeEEEEEEEEe
Confidence 3579 9999998666 99999999887642 1567899999975 9999999999888888888899
Q ss_pred cccccCce--eccCCC
Q psy11786 92 CPIYAEKI--SESHPK 105 (108)
Q Consensus 92 Csiq~r~q--~e~~p~ 105 (108)
|+.+++++ +..+|.
T Consensus 188 ~~~~~~~~~~~~p~~~ 203 (363)
T 4ffl_A 188 HIDETYDCHMVTPLPA 203 (363)
T ss_dssp EECTTSCEEEEEECCC
T ss_pred ccCCcccceeecchhH
Confidence 99988887 666653
No 52
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.06 E-value=5.1e-10 Score=82.69 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=52.3
Q ss_pred HhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 13 FNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 13 ~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
+++.+| |++|||..|+ .|+++|++.++|..+++.++.. +..++||+||++ +|+++.++++
T Consensus 128 ~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvee~i~G-~e~~v~v~~g 190 (307)
T 3r5x_A 128 ELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW------DSEVVIEKYIKG-EEITCSIFDG 190 (307)
T ss_dssp HHHHHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEETT
T ss_pred HHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEECCcCC-EEEEEEEECC
Confidence 567899 9999998666 9999999999999999998775 789999999986 9999999854
No 53
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.06 E-value=4.1e-10 Score=87.27 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=54.1
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC--
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK-- 80 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~-- 80 (108)
+.+++.++++++| |++|||..|+ +|+++|++.++|..+++.+...+.. ++..++||+||++++|+.+.++.+.
T Consensus 144 ~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~~lvEe~i~~g~E~sv~~~~~~~~ 221 (433)
T 2dwc_A 144 TLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARG--SAEKIIVEEHIDFDVEVTELAVRHFDE 221 (433)
T ss_dssp SHHHHHHHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC-----------CCEEEEECCCCSEEEEECCEEEECT
T ss_pred CHHHHHHHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccc--CCCCEEEEccCCCCeeEEEEEEecccC
Confidence 4567777888999 9999998655 9999999999999999887654311 2568999999986699999988754
Q ss_pred CCC
Q psy11786 81 YGD 83 (108)
Q Consensus 81 ~g~ 83 (108)
.|+
T Consensus 222 ~G~ 224 (433)
T 2dwc_A 222 NGE 224 (433)
T ss_dssp TSC
T ss_pred CCC
Confidence 565
No 54
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.99 E-value=9.4e-10 Score=92.03 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=56.5
Q ss_pred HHHHHHHh-hhcC-CeEEEcCCCc--eeeEEeC---CHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 7 FSRLMIFN-SIHG-PICQRLVAEV--VACEWLL---TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 7 ~~~~~~~~-~~~g-Pv~vKp~~gG--~G~~iV~---~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
.+++.+.+ +.+| |++|||..|| +||.+|+ +.+++..+++.++.. +..++||+||++ +|++|.++++
T Consensus 508 ~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~------~~~vlVEefI~G-~E~~v~Vvgg 580 (750)
T 3ln6_A 508 RKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTE------DSAILVEEYIEG-TEYRFFVLEG 580 (750)
T ss_dssp TTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEETT
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhh------CCcEEEEeccCC-CEEEEEEECC
Confidence 34555555 6789 9999998777 9999999 899999999998765 788999999985 9999999975
No 55
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.98 E-value=1.3e-09 Score=79.98 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=51.7
Q ss_pred HhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEe
Q psy11786 13 FNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILG 78 (108)
Q Consensus 13 ~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~ 78 (108)
+++.+| |++|||..|+ .|++++++.++|..+++.+... +..++||+||++ +|+.+.+++
T Consensus 133 ~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~------~~~~lvee~i~g-~e~~v~~~~ 194 (306)
T 1iow_A 133 EISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH------DEEVLIEKWLSG-PEFTVAILG 194 (306)
T ss_dssp HHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTT------CSEEEEEECCCC-CEEEEEEET
T ss_pred HHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh------CCCEEEEeCcCC-EEEEEEEEC
Confidence 567899 9999998665 9999999999999999887653 678999999985 999999994
No 56
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.95 E-value=2.6e-09 Score=83.61 Aligned_cols=84 Identities=10% Similarity=-0.060 Sum_probs=67.8
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCC--Cc----eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEE
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVA--EV----VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQIL 77 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~--gG----~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl 77 (108)
.+.+++.+.++++| |++|||.. || .|+.++++.+++..+++..+......+....++||++++.++|+.++++
T Consensus 26 ~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~~g~El~vgv~ 105 (397)
T 3ufx_B 26 YTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYAGLI 105 (397)
T ss_dssp SSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCCEEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeecCCeeEEEEEE
Confidence 46788889999999 99999965 34 4999999999999999988765433333578999999987899999999
Q ss_pred ecCC-C-CEEEec
Q psy11786 78 GDKY-G-DVVHLY 88 (108)
Q Consensus 78 ~d~~-g-~~~~l~ 88 (108)
.|.. | .++.++
T Consensus 106 ~D~~~g~pvi~~s 118 (397)
T 3ufx_B 106 LDRAKKRVVLMLS 118 (397)
T ss_dssp EETTTTEEEEEEE
T ss_pred ecCCCCCcEEEEe
Confidence 9976 4 455553
No 57
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.94 E-value=1.8e-09 Score=80.37 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=38.4
Q ss_pred hhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec-CCCCEEEeccc
Q psy11786 15 SIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD-KYGDVVHLYDR 90 (108)
Q Consensus 15 ~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d-~~g~~~~l~eR 90 (108)
+.+| |++|||..|+ .|++++++.++|..+++. ...++||+||++ +|+.+.++.| ..|+++++..+
T Consensus 146 ~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~----------~~~~lvee~i~G-~e~~v~~~~d~~~G~~~~~~~~ 214 (331)
T 2pn1_A 146 GEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK----------NTDLIVQELLVG-QELGVDAYVDLISGKVTSIFIK 214 (331)
T ss_dssp TSSCSCEEEEESBC---------------------------------CEEEEECCCS-EEEEEEEEECTTTCCEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh----------CCCeEEEecCCC-cEEEEEEEEecCCCeEEEEEEE
Confidence 5799 9999997555 999999999999887653 357999999987 9999999998 77888766555
Q ss_pred cc
Q psy11786 91 DC 92 (108)
Q Consensus 91 ~C 92 (108)
++
T Consensus 215 ~~ 216 (331)
T 2pn1_A 215 EK 216 (331)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 58
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=98.90 E-value=4.6e-09 Score=81.99 Aligned_cols=84 Identities=12% Similarity=-0.078 Sum_probs=66.8
Q ss_pred ccHHHHHHHhhhcC-C-eEEEcCCC--c----eeeEEeCCHHHHHHHHHHHhhhHh-------hhcCCCcEEEeecCCCC
Q psy11786 5 KAFSRLMIFNSIHG-P-ICQRLVAE--V----VACEWLLTKDAIEENFKRAGPKLW-------LFFGKDDMLVEKDIGRP 69 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-P-v~vKp~~g--G----~G~~iV~~~~el~~a~~~a~~~a~-------~~fgd~~vlIE~~i~~~ 69 (108)
.+.+++.+.++++| | ++|||..+ | .|++++++.+++..+++..+.... .......++||+|++.+
T Consensus 26 ~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~ 105 (388)
T 2nu8_B 26 TTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIA 105 (388)
T ss_dssp SSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEE
T ss_pred CCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccccC
Confidence 46788888999999 9 99999643 3 499999999999999998875421 11124579999999877
Q ss_pred eEEEEEEEecCC-C-CEEEec
Q psy11786 70 RHIEVQILGDKY-G-DVVHLY 88 (108)
Q Consensus 70 reievqvl~d~~-g-~~~~l~ 88 (108)
+|+.++++.|.. | +++.++
T Consensus 106 ~E~~v~v~~D~~~g~pvi~~~ 126 (388)
T 2nu8_B 106 KELYLGAVVDRSSRRVVFMAS 126 (388)
T ss_dssp EEEEEEEEEETTTTEEEEEEE
T ss_pred CcEEEEEEEecccCCcEEEEe
Confidence 999999999976 4 666665
No 59
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.82 E-value=4e-09 Score=80.31 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=49.8
Q ss_pred HhhhcC-CeEEEcCC---CceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecCCCCEEEec
Q psy11786 13 FNSIHG-PICQRLVA---EVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLY 88 (108)
Q Consensus 13 ~~~~~g-Pv~vKp~~---gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~~g~~~~l~ 88 (108)
.++++| |++|||.. ||+|+.+|++.+++..+++ ..++||+||++++|+++.++.|..|++.+++
T Consensus 127 ~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~------------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~~ 194 (380)
T 3ax6_A 127 DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK------------GETYLEEFVEIEKELAVMVARNEKGEIACYP 194 (380)
T ss_dssp HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC------------SSEEEEECCCEEEEEEEEEEECSSCCEEEEE
T ss_pred HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc------------CCEEEEeccCCCeeEEEEEEECCCCCEEEEC
Confidence 557899 99999974 3499999999998865443 5799999998569999999998778876653
No 60
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=98.81 E-value=1.5e-08 Score=79.37 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=72.2
Q ss_pred ccHHHHHHHhhhcC--CeEEEc--CCCc--ee---------eEEeCCHHHHHHHHHHHhhhHh--hhc---C--CCcEEE
Q psy11786 5 KAFSRLMIFNSIHG--PICQRL--VAEV--VA---------CEWLLTKDAIEENFKRAGPKLW--LFF---G--KDDMLV 62 (108)
Q Consensus 5 ~~~~~~~~~~~~~g--Pv~vKp--~~gG--~G---------~~iV~~~~el~~a~~~a~~~a~--~~f---g--d~~vlI 62 (108)
.+.+++.+.++++| |++||| .+|| +| ++++++.+++..+++..+.... ..+ | ...++|
T Consensus 26 ~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlV 105 (395)
T 2fp4_B 26 DTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMV 105 (395)
T ss_dssp SSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEE
T ss_pred CCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEE
Confidence 46788989999999 599999 5777 44 9999999999999988775531 111 2 357999
Q ss_pred eecCCCCeEEEEEEEecCC-C-CEEEec-ccccccc
Q psy11786 63 EKDIGRPRHIEVQILGDKY-G-DVVHLY-DRDCPIY 95 (108)
Q Consensus 63 E~~i~~~reievqvl~d~~-g-~~~~l~-eR~Csiq 95 (108)
|+|++.++|+.++++.|.. + +++.++ +.-+.|+
T Consensus 106 Ee~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE 141 (395)
T 2fp4_B 106 AEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIE 141 (395)
T ss_dssp EECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHH
T ss_pred EEccCCceeEEEEEEEccccCceEEEEECCCCccce
Confidence 9999988999999999976 3 677777 7777776
No 61
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.75 E-value=1.9e-09 Score=77.83 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=48.9
Q ss_pred cHHHHHHHhhhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC-CeEEEEEEEec
Q psy11786 6 AFSRLMIFNSIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR-PRHIEVQILGD 79 (108)
Q Consensus 6 ~~~~~~~~~~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~-~reievqvl~d 79 (108)
+.+++.++++++| |++|||..|+ .|+.++++.++|..+++.+... ..+.+..+++|+||++ .+++++.++++
T Consensus 111 ~~~~~~~~~~~~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~--~~~~~~~~lvqe~i~~~~~e~~v~v~~~ 186 (280)
T 1uc8_A 111 DREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVL--GGFQHQLFYIQEYVEKPGRDIRVFVVGE 186 (280)
T ss_dssp SHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC--------------CTTTTCEEEEECCCCSSCCEEEEEETT
T ss_pred CHHHHHHHHHHhCCCEEEEECCCCCcccceecccccccchhhhhHhhh--cccCCCcEEEEeccCCCCceEEEEEECC
Confidence 4466667778899 9999998665 9999999999999888765111 1122578999999987 68999998853
No 62
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.65 E-value=5.1e-08 Score=71.29 Aligned_cols=68 Identities=9% Similarity=0.039 Sum_probs=52.9
Q ss_pred cHHHHHHHhhhcCCeEEEcCCCc--eeeEEeC-CHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC--CeEEEEEEEe
Q psy11786 6 AFSRLMIFNSIHGPICQRLVAEV--VACEWLL-TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR--PRHIEVQILG 78 (108)
Q Consensus 6 ~~~~~~~~~~~~gPv~vKp~~gG--~G~~iV~-~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~--~reievqvl~ 78 (108)
+.+++.++.+.+||++|||..|+ .|+.+++ +.++|..+++.... .+..++++|+||++ ..++++-+++
T Consensus 143 ~~~~~~~~~~~~~p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-----~~~~~~lvqe~i~~~~~~~~~v~~~~ 215 (316)
T 1gsa_A 143 NKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-----HGTRYCMAQNYLPAIKDGDKRVLVVD 215 (316)
T ss_dssp CHHHHHHHHHHHSSEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-----TTTSCEEEEECCGGGGGCEEEEEEET
T ss_pred CHHHHHHHHHHcCCEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-----cCCceEEEecccCCCCCCCEEEEEEC
Confidence 45666667777889999998665 9999999 88899887766433 22468999999987 5788887774
No 63
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.55 E-value=2.1e-07 Score=68.87 Aligned_cols=62 Identities=2% Similarity=-0.170 Sum_probs=47.3
Q ss_pred hhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcC-CCcEEEeecCCCCeEEEEEEEec
Q psy11786 15 SIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFG-KDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 15 ~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fg-d~~vlIE~~i~~~reievqvl~d 79 (108)
++++ |++|||..|+ .|+.+|++.++|..+++.+.... .|. ...++||+||++ .++++.++.+
T Consensus 123 ~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~lvee~i~G-~e~~~~~~~~ 188 (334)
T 2r85_A 123 DDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIK--RKEDLKNIQIQEYVLG-VPVYPHYFYS 188 (334)
T ss_dssp GGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCC--SGGGCCSEEEEECCCC-EEEEEEEEEE
T ss_pred HHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhc--ccCCCCcEEEEeccCC-ceeEEEEeec
Confidence 4578 9999998666 99999999999999998876531 121 368999999987 7777666554
No 64
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=98.12 E-value=3e-06 Score=63.37 Aligned_cols=45 Identities=7% Similarity=-0.051 Sum_probs=37.2
Q ss_pred hhcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEec
Q psy11786 15 SIHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGD 79 (108)
Q Consensus 15 ~~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d 79 (108)
..+| |++|||..|+ .|++++++ .+..+++|+||++ +|++|.++++
T Consensus 130 ~~~~~P~vvKP~~g~gs~Gv~~v~~-------------------~~~~~lvEe~I~G-~e~sv~v~~g 177 (305)
T 3df7_A 130 RPLDCKFIIKPRTACAGEGIGFSDE-------------------VPDGHIAQEFIEG-INLSVSLAVG 177 (305)
T ss_dssp SCCSSSEEEEESSCC----CBCCSS-------------------CCTTEEEEECCCS-EEEEEEEEES
T ss_pred ccCCCCEEEEeCCCCCCCCEEEEec-------------------CCCCEEEEeccCC-cEEEEEEEeC
Confidence 3579 9999998666 99999998 1778999999985 9999999984
No 65
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.11 E-value=5.9e-06 Score=62.75 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=50.2
Q ss_pred HhhhcC-CeEEEcCCC--ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 13 FNSIHG-PICQRLVAE--VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 13 ~~~~~g-Pv~vKp~~g--G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
..+.+| |++|||..| |+|+.++.+.+++...++..... ...+++++||+..+-|.+.++++.
T Consensus 147 ~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 147 MLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKIGNN 211 (309)
T ss_dssp GSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETTE
T ss_pred hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeecCCCceEEEEEECCE
Confidence 345689 999999754 49999999999998877654433 456889999998889999999864
No 66
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.09 E-value=6.2e-06 Score=61.03 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=45.8
Q ss_pred HHHHHHHhhh--cC-CeEEEcCC--Cc---eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC-CeEEEEEEE
Q psy11786 7 FSRLMIFNSI--HG-PICQRLVA--EV---VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR-PRHIEVQIL 77 (108)
Q Consensus 7 ~~~~~~~~~~--~g-Pv~vKp~~--gG---~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~-~reievqvl 77 (108)
.+++.+..+. +| |++|||.. || .|+.++++.++|.. + +.++++|+||++ .+++++.++
T Consensus 122 ~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~------------~-~~~~lvqe~i~~~g~~~~v~v~ 188 (324)
T 1z2n_X 122 KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD------------I-HFPCLCQHYINHNNKIVKVFCI 188 (324)
T ss_dssp HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT------------C-CSSEEEEECCCCTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh------------c-CCCEEEEEccCCCCcEEEEEEE
Confidence 3455555555 67 99999974 56 89999999887642 2 578999999975 589999998
Q ss_pred ec
Q psy11786 78 GD 79 (108)
Q Consensus 78 ~d 79 (108)
++
T Consensus 189 g~ 190 (324)
T 1z2n_X 189 GN 190 (324)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.04 E-value=2.1e-05 Score=60.67 Aligned_cols=60 Identities=2% Similarity=-0.042 Sum_probs=41.1
Q ss_pred hhcC-CeEEEcCC--CceeeEEeCCHHHHHHHHHHHhhhHhhhcCC---CcEEEeecCCCCeEEEEEEE
Q psy11786 15 SIHG-PICQRLVA--EVVACEWLLTKDAIEENFKRAGPKLWLFFGK---DDMLVEKDIGRPRHIEVQIL 77 (108)
Q Consensus 15 ~~~g-Pv~vKp~~--gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd---~~vlIE~~i~~~reievqvl 77 (108)
++++ |++|||.. +|+|+.++++.+|+..+++...... .||. .+++||+|+++ .+..+..+
T Consensus 147 ~e~~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~--~~~~~~~~~viIEEfl~G-~e~s~~~f 212 (361)
T 2r7k_A 147 EDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRG--ILTDEDIANAHIEEYVVG-TNFCIHYF 212 (361)
T ss_dssp GGCCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTT--SCCHHHHHHCEEEECCCS-EEEEEEEE
T ss_pred HHcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcc--ccccCCCCeEEEEeccce-EEeeEEEE
Confidence 4458 99999964 4499999999999999998775421 1222 36999999987 55553333
No 68
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=97.98 E-value=1.6e-05 Score=61.19 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=49.3
Q ss_pred hhhcC-CeEEEcCCC--ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 14 NSIHG-PICQRLVAE--VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 14 ~~~~g-Pv~vKp~~g--G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
.+.+| |++|||..| |+|+.++.+.+++...++..... ...+++++||+..+-|.|.|+++.
T Consensus 165 ~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 165 VTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA------KTYATTEAFIDSKYDIRIQKIGSN 228 (344)
T ss_dssp CCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETTE
T ss_pred hhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeccCCCccEEEEEECCE
Confidence 45689 999999754 49999999999998877544332 456889999998889999999864
No 69
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=97.96 E-value=1.8e-05 Score=62.59 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=49.8
Q ss_pred hhhcC-CeEEEcCCC--ceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEecC
Q psy11786 14 NSIHG-PICQRLVAE--VVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDK 80 (108)
Q Consensus 14 ~~~~g-Pv~vKp~~g--G~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~d~ 80 (108)
.+.+| |++|||..| |+|+.++++.+++...++..... ...+|+++||+..+-|.|.|+++.
T Consensus 260 i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~------~~~~~vQEfI~~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 260 LSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT------KTYATAEPFIDAKYDVRVQKIGQN 323 (422)
T ss_dssp CCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TSCEEEEECCCEEEEEEEEEETTE
T ss_pred hhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc------CceEEEEeecCCCceEEEEEECCE
Confidence 45689 999999754 49999999999998888654433 456889999998789999999864
No 70
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=97.84 E-value=2.9e-05 Score=59.48 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=41.8
Q ss_pred hhcC-CeEEEcCCC-c---eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC-CCeEEEEEEEec
Q psy11786 15 SIHG-PICQRLVAE-V---VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG-RPRHIEVQILGD 79 (108)
Q Consensus 15 ~~~g-Pv~vKp~~g-G---~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~-~~reievqvl~d 79 (108)
..+| |++|||..| | .||.+|++.++|.. | +.+++|++||+ +++++.|-|+|+
T Consensus 159 ~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~------------~-~~~~lvQefI~~~G~dirv~VvG~ 216 (346)
T 2q7d_A 159 NGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNA------------I-QPPCVVQNFINHNAVLYKVFVVGE 216 (346)
T ss_dssp TTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC---------------CCEEEEECCCCTTEEEEEEEETT
T ss_pred cCCCCCEEEEecCCCcceeeeeEEecCHHHHHh------------c-CCCEEEEEeeCCCCeEEEEEEECC
Confidence 4589 999999753 3 79999999988753 1 46799999997 368999999976
No 71
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=97.79 E-value=3.6e-06 Score=64.10 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=28.9
Q ss_pred hcC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCCeEEEEEEEe
Q psy11786 16 IHG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILG 78 (108)
Q Consensus 16 ~~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~reievqvl~ 78 (108)
.+| |+||||..|| +|+.+|++ +||..+++.+ + .+++||+||++.+- ...++.
T Consensus 123 ~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~--------~-~~~IiEEfI~g~~~-~~~~f~ 177 (320)
T 2pbz_A 123 KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTL--------E-EPYRVERFIPGVYL-YVHFFY 177 (320)
T ss_dssp CSSCCEEEECC------------C-EECSCCCC-------------CCEEEECCCSCEE-EEEEEE
T ss_pred CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhc--------C-CCEEEEeeeceEec-ceeEEe
Confidence 479 9999997544 99999999 9987654333 1 46899999997554 544443
No 72
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=97.26 E-value=0.00045 Score=54.55 Aligned_cols=85 Identities=15% Similarity=0.037 Sum_probs=64.1
Q ss_pred cccHHHHHHHhhhcC--CeEEEcC--CCc----eeeEEeCCHHHHHHHHHHHhhhHhhh----cCCCcEEEeecCCC--C
Q psy11786 4 NKAFSRLMIFNSIHG--PICQRLV--AEV----VACEWLLTKDAIEENFKRAGPKLWLF----FGKDDMLVEKDIGR--P 69 (108)
Q Consensus 4 ~~~~~~~~~~~~~~g--Pv~vKp~--~gG----~G~~iV~~~~el~~a~~~a~~~a~~~----fgd~~vlIE~~i~~--~ 69 (108)
.++.+++.+.+++|| ||+||+- .|| -|+.++.+.+++..+++.-....... ---..++||+.+.. .
T Consensus 37 ~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~ 116 (425)
T 3mwd_A 37 DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQA 116 (425)
T ss_dssp TCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGG
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCC
Confidence 367899999999998 9999994 466 48999999999888877655332210 00245899999865 4
Q ss_pred eEEEEEEEecCCCCEEEec
Q psy11786 70 RHIEVQILGDKYGDVVHLY 88 (108)
Q Consensus 70 reievqvl~d~~g~~~~l~ 88 (108)
+|+=+.+.-|..|+++.++
T Consensus 117 ~E~ylgi~~Dr~gpvI~~s 135 (425)
T 3mwd_A 117 EEFYVCIYATREGDYVLFH 135 (425)
T ss_dssp GEEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEEecCCCCEEEEE
Confidence 8999999999888777664
No 73
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=96.87 E-value=0.0013 Score=55.77 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=63.8
Q ss_pred ccHHHHHHHhhhcC--CeEEEc--CCCc----eeeEEeCCHHHHHHHHHHHhhhHhhhc----CCCcEEEeecCCC--Ce
Q psy11786 5 KAFSRLMIFNSIHG--PICQRL--VAEV----VACEWLLTKDAIEENFKRAGPKLWLFF----GKDDMLVEKDIGR--PR 70 (108)
Q Consensus 5 ~~~~~~~~~~~~~g--Pv~vKp--~~gG----~G~~iV~~~~el~~a~~~a~~~a~~~f----gd~~vlIE~~i~~--~r 70 (108)
++.+++.+.+++|| ||+||| -.|| -|+.++.+.++..+++++-........ --..++||+.+.. .+
T Consensus 38 ~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ 117 (829)
T 3pff_A 38 TDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAE 117 (829)
T ss_dssp CCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGG
T ss_pred CCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCcc
Confidence 56789999999998 999999 3566 489999999999988777654322100 0145899999864 48
Q ss_pred EEEEEEEecCCCCEEEec
Q psy11786 71 HIEVQILGDKYGDVVHLY 88 (108)
Q Consensus 71 eievqvl~d~~g~~~~l~ 88 (108)
|+=+.++-|..|+++.++
T Consensus 118 ElYvgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 118 EFYVCIYATREGDYVLFH 135 (829)
T ss_dssp EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEecCCCCEEEEE
Confidence 999999999888776664
No 74
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=94.19 E-value=0.047 Score=42.46 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=39.4
Q ss_pred cC-CeEEEcCCCc--eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCCC-------e--EEEEEEEecC
Q psy11786 17 HG-PICQRLVAEV--VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRP-------R--HIEVQILGDK 80 (108)
Q Consensus 17 ~g-Pv~vKp~~gG--~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~~-------r--eievqvl~d~ 80 (108)
-+ ++|+||..|. +|+.++++.+++...++.. ....+|.+||++| + ++.+=||-.+
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~---------~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts 212 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN 212 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHHH---------TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc---------CCcEEEEecccCceeecCCCceeEEEEEEEEcC
Confidence 46 9999998665 9999999999988766531 4568999999753 2 5666666544
No 75
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=89.05 E-value=0.062 Score=41.14 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=42.3
Q ss_pred hhhcC-CeEEEcCCC-------------c----eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC-CeEEEE
Q psy11786 14 NSIHG-PICQRLVAE-------------V----VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR-PRHIEV 74 (108)
Q Consensus 14 ~~~~g-Pv~vKp~~g-------------G----~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~-~reiev 74 (108)
.+.+| |+++||+.| | +=++++.+.+.....- ...+. +..+++++||+. ++-|.|
T Consensus 141 g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~-~~vr~------~~~~i~QEFI~~~G~DIRv 213 (330)
T 3t7a_A 141 GEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SNVRK------TGSYIYEEFMPTDGTDVKV 213 (330)
T ss_dssp TEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESC-CSCCS------SSCEEEEECCCCSSEEEEE
T ss_pred cccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChh-hhhcc------CCcEEEEeccCCCCceEEE
Confidence 47799 999999766 2 4455666544321100 01122 567899999974 688999
Q ss_pred EEEecCCCCEEEeccc
Q psy11786 75 QILGDKYGDVVHLYDR 90 (108)
Q Consensus 75 qvl~d~~g~~~~l~eR 90 (108)
=++|+. +++-=.|
T Consensus 214 ~vVG~~---vv~Am~R 226 (330)
T 3t7a_A 214 YTVGPD---YAHAEAR 226 (330)
T ss_dssp EEESTT---CEEEEEE
T ss_pred EEECCE---EEEEEEE
Confidence 999864 4554344
No 76
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=64.36 E-value=25 Score=22.36 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=31.1
Q ss_pred HHHHHHhhhc---C-CeEEEcCCCc--eeeEE---eCCHHHHHHHHHHHhh
Q psy11786 8 SRLMIFNSIH---G-PICQRLVAEV--VACEW---LLTKDAIEENFKRAGP 49 (108)
Q Consensus 8 ~~~~~~~~~~---g-Pv~vKp~~gG--~G~~i---V~~~~el~~a~~~a~~ 49 (108)
+++.++.+.. + .+-+||+.+| ..+++ |.+.+++...++....
T Consensus 51 ~~V~~vv~~~~p~d~~~~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~ 101 (109)
T 1rwu_A 51 DQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGK 101 (109)
T ss_dssp HHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCceecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 4455666665 5 5688999999 66665 7999999888877655
No 77
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=60.58 E-value=14 Score=28.56 Aligned_cols=44 Identities=11% Similarity=0.270 Sum_probs=31.9
Q ss_pred HHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 10 LMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
.++.+.+.| ||++| .||. +.+|+..|++..... |...+.+..++
T Consensus 150 LL~~va~~gKPViLS-----tGma---Tl~Ei~~Ave~i~~~-----Gn~~iiLlhc~ 194 (385)
T 1vli_A 150 LLKYVARLNRPMIFS-----TAGA---EISDVHEAWRTIRAE-----GNNQIAIMHCV 194 (385)
T ss_dssp HHHHHHTTCSCEEEE-----CTTC---CHHHHHHHHHHHHTT-----TCCCEEEEEEC
T ss_pred HHHHHHhcCCeEEEE-----CCCC---CHHHHHHHHHHHHHC-----CCCcEEEEecc
Confidence 345556679 99999 8885 999999999887664 34456554454
No 78
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=52.18 E-value=27 Score=26.59 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=31.0
Q ss_pred HHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecC
Q psy11786 10 LMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDI 66 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i 66 (108)
.++.+.+.| ||++| .||. +.+|+..|++..... |. .+.+..++
T Consensus 140 LL~~va~~gkPviLs-----tGma---t~~Ei~~Ave~i~~~-----G~-~iiLlhc~ 183 (349)
T 2wqp_A 140 LIKLVASFGKPIILS-----TGMN---SIESIKKSVEIIREA-----GV-PYALLHCT 183 (349)
T ss_dssp HHHHHHTTCSCEEEE-----CTTC---CHHHHHHHHHHHHHH-----TC-CEEEEECC
T ss_pred HHHHHHhcCCeEEEE-----CCCC---CHHHHHHHHHHHHHc-----CC-CEEEEecc
Confidence 345556679 99999 8884 999999999887664 23 55554554
No 79
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=45.89 E-value=36 Score=25.95 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=26.0
Q ss_pred HHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhh
Q psy11786 10 LMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPK 50 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~ 50 (108)
.++.+.+.| ||++| .||+ +.+|+..|++-....
T Consensus 127 LL~~va~~gKPviLs-----tGms---tl~Ei~~Ave~i~~~ 160 (350)
T 3g8r_A 127 LLERIARSDKPVVAS-----TAGA---RREDIDKVVSFMLHR 160 (350)
T ss_dssp HHHHHHTSCSCEEEE-----CTTC---CHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCCcEEEE-----CCCC---CHHHHHHHHHHHHHc
Confidence 345556789 99999 8884 999999998887654
No 80
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=38.38 E-value=23 Score=24.09 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=21.2
Q ss_pred HHHHHHHhhhcC-CeEEEcCCCc---ee--eEEeC
Q psy11786 7 FSRLMIFNSIHG-PICQRLVAEV---VA--CEWLL 35 (108)
Q Consensus 7 ~~~~~~~~~~~g-Pv~vKp~~gG---~G--~~iV~ 35 (108)
...+.++|+++| +++|||-.+- .+ |+.+.
T Consensus 103 ~~~i~~lA~~v~adliI~pL~~E~~~~~~~~kl~n 137 (153)
T 2k4m_A 103 HSSLMRVADAVGARLIIKPLTGEDIVTERKMKLVN 137 (153)
T ss_dssp HHHHHHHHHHHTCEEEEECBTTBCCCCCTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcCCCCCceEEEe
Confidence 356788999999 9999995443 33 66654
No 81
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=37.75 E-value=65 Score=20.43 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=40.0
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCce----e-------------------eEEeCCHHHHHHHHHHHhhhHhh-hcCCCc
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEVV----A-------------------CEWLLTKDAIEENFKRAGPKLWL-FFGKDD 59 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG~----G-------------------~~iV~~~~el~~a~~~a~~~a~~-~fgd~~ 59 (108)
+..+++.+...+.| |-+=--...|+ | +.++-++++++..++.....+.. .+||..
T Consensus 11 ~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~TG~~GDGk 90 (118)
T 3t9z_A 11 EKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSARTGKFGDGR 90 (118)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCE
T ss_pred HHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhcCCCCCCeE
Confidence 45677777778889 88766555552 3 33445667777777777766654 588888
Q ss_pred EEEee
Q psy11786 60 MLVEK 64 (108)
Q Consensus 60 vlIE~ 64 (108)
+||-.
T Consensus 91 IFV~~ 95 (118)
T 3t9z_A 91 IFVIP 95 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88844
No 82
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=37.29 E-value=39 Score=20.29 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=22.3
Q ss_pred EEcCCCc--eeeEE---eCCHHHHHHHHHHHhh
Q psy11786 22 QRLVAEV--VACEW---LLTKDAIEENFKRAGP 49 (108)
Q Consensus 22 vKp~~gG--~G~~i---V~~~~el~~a~~~a~~ 49 (108)
.||+.+| .++++ +.+.+++...++....
T Consensus 46 ~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~ 78 (86)
T 2h9z_A 46 KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQ 78 (86)
T ss_dssp SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTC
T ss_pred cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 5999999 66665 7999999888877655
No 83
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=35.18 E-value=79 Score=25.01 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=29.2
Q ss_pred HhhhcCCeEEEcCCCc--eeeEE--eCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCC
Q psy11786 13 FNSIHGPICQRLVAEV--VACEW--LLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIG 67 (108)
Q Consensus 13 ~~~~~gPv~vKp~~gG--~G~~i--V~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~ 67 (108)
+.+.+.-++|||+.|. .||.+ -.+.++++...++.... ....+..+++.
T Consensus 358 vl~~l~~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~------p~~yIaQe~v~ 410 (474)
T 3n6x_A 358 VLDNLAELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILAN------PANYIAQPTLA 410 (474)
T ss_dssp HHHSGGGEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHS------GGGEEEEECCC
T ss_pred HHhchhheEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhC------CCCEEEeeccC
Confidence 3344447799998653 77776 35677777777666543 33466777764
No 84
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=34.94 E-value=56 Score=23.84 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=30.8
Q ss_pred HHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCC-CcEEEeecC
Q psy11786 10 LMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGK-DDMLVEKDI 66 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd-~~vlIE~~i 66 (108)
.+..+...| ||++| .|+. -+.+|+..|++..... |. .-+|+++.+
T Consensus 137 ll~~~a~~~kPV~lk-----~G~~--~t~~ei~~Ave~i~~~-----Gn~~i~L~~Rg~ 183 (276)
T 1vs1_A 137 LLREVGRSGKPVLLK-----RGFG--NTVEELLAAAEYILLE-----GNWQVVLVERGI 183 (276)
T ss_dssp HHHHHHHHTCCEEEE-----CCTT--CCHHHHHHHHHHHHHT-----TCCCEEEEECCB
T ss_pred HHHHHHccCCeEEEc-----CCCC--CCHHHHHHHHHHHHHc-----CCCeEEEEeCCc
Confidence 445556789 99999 5553 4678888888887653 34 345667555
No 85
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=33.73 E-value=71 Score=20.26 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=41.5
Q ss_pred cccHHHHHHHhhhcC-CeEEEcCCCc----ee-------------------eEEeCCHHHHHHHHHHHhhhHhh-hcCCC
Q psy11786 4 NKAFSRLMIFNSIHG-PICQRLVAEV----VA-------------------CEWLLTKDAIEENFKRAGPKLWL-FFGKD 58 (108)
Q Consensus 4 ~~~~~~~~~~~~~~g-Pv~vKp~~gG----~G-------------------~~iV~~~~el~~a~~~a~~~a~~-~fgd~ 58 (108)
.+..+++.+...+.| |-+=-....| .| +.+|-++++++..++.....+.. .+||.
T Consensus 10 p~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~TG~~GDG 89 (119)
T 3ncq_A 10 AEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFTGSPGDG 89 (119)
T ss_dssp TTTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSSTTCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCC
Confidence 345677777778889 8776554444 23 34556677888888877776665 67888
Q ss_pred cEEEee
Q psy11786 59 DMLVEK 64 (108)
Q Consensus 59 ~vlIE~ 64 (108)
.+||-.
T Consensus 90 kIFV~~ 95 (119)
T 3ncq_A 90 KIFIIP 95 (119)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888844
No 86
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=32.76 E-value=48 Score=24.49 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=29.0
Q ss_pred HHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcE-EEeec
Q psy11786 10 LMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDM-LVEKD 65 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~v-lIE~~ 65 (108)
.+..+...| ||++| .|++ -+.+|+..+++..... |...+ |+|.-
T Consensus 126 LLr~va~~gkPVilK-----~G~~--~t~~ei~~ave~i~~~-----Gn~~i~L~erg 171 (285)
T 3sz8_A 126 LVVAIAKAGKPVNVK-----KPQF--MSPTQLKHVVSKCGEV-----GNDRVMLCERG 171 (285)
T ss_dssp HHHHHHHTSSCEEEE-----CCTT--SCGGGTHHHHHHHHHT-----TCCCEEEEECC
T ss_pred HHHHHHccCCcEEEe-----CCCC--CCHHHHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 344456899 99999 6664 4677888888877654 34455 44543
No 87
>2ddx_A Beta-1,3-xylanase; glycoside hydrolase, TIM barrel, hydrola; 0.86A {Vibrio SP}
Probab=31.90 E-value=83 Score=23.56 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=29.3
Q ss_pred HHHHHHhhhcC-CeEEEcC---CCc-eeeEEeCCHHHHHHHHHHHhhhHh
Q psy11786 8 SRLMIFNSIHG-PICQRLV---AEV-VACEWLLTKDAIEENFKRAGPKLW 52 (108)
Q Consensus 8 ~~~~~~~~~~g-Pv~vKp~---~gG-~G~~iV~~~~el~~a~~~a~~~a~ 52 (108)
+......+.+| ||+++|. .|+ .| .+.+++..+++.....-.
T Consensus 96 ~~~a~~l~~~gvPV~~R~~HEmnG~W~~----~~p~~y~~~wr~v~d~~r 141 (333)
T 2ddx_A 96 DTLLNTLAGYDRPVYLRWAYEVDGPWNG----HSPSGIVTSFQYVHDRII 141 (333)
T ss_dssp HHHHHHHHTTCSCEEEEETSSTTCGGGC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCccCCCCcCC----CCHHHHHHHHHHHHHHHH
Confidence 44555667889 9999995 444 53 778888888888766543
No 88
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=30.08 E-value=76 Score=24.28 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=31.1
Q ss_pred HHHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcE-EEee
Q psy11786 9 RLMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDM-LVEK 64 (108)
Q Consensus 9 ~~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~v-lIE~ 64 (108)
+.++.+.+.| ||++| .||. -+.+|+..+++..... |...+ |+|.
T Consensus 240 ~LL~~~a~~gkPVilk-----~G~~--~t~~e~~~Ave~i~~~-----Gn~~i~L~~r 285 (385)
T 3nvt_A 240 ELLKAAGRVDKPILLK-----RGLS--ATIEEFIGAAEYIMSQ-----GNGKIILCER 285 (385)
T ss_dssp HHHHHHHTSSSCEEEE-----CCTT--CCHHHHHHHHHHHHTT-----TCCCEEEEEC
T ss_pred HHHHHHHccCCcEEEe-----cCCC--CCHHHHHHHHHHHHHc-----CCCeEEEEEC
Confidence 4556677899 99999 5552 5788999988887654 34444 5565
No 89
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function, chlorobaculum tepidum T structural genomics, PSI2, MCSG; HET: MSE; 2.10A {Oleispira antarctica rb-8} SCOP: d.38.1.0
Probab=28.68 E-value=84 Score=20.97 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=23.8
Q ss_pred EEEcCCCc-eeeEEeCCHHHHHHHHHHHhhh
Q psy11786 21 CQRLVAEV-VACEWLLTKDAIEENFKRAGPK 50 (108)
Q Consensus 21 ~vKp~~gG-~G~~iV~~~~el~~a~~~a~~~ 50 (108)
++||+.|+ .....+.++++++...+...+.
T Consensus 95 yl~P~~~~~~a~~~~~~~~~~~~i~~~l~~~ 125 (165)
T 3lmb_A 95 YIAPVYGRIRAICHAPDEEELANFFDHFERK 125 (165)
T ss_dssp ECSCCCSCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred EccCccCCeEEEEEeCcHHHHHHHHHHHHhC
Confidence 67899998 7777777788888877777665
No 90
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=26.83 E-value=69 Score=23.83 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=29.3
Q ss_pred HHHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcE-EEeec
Q psy11786 10 LMIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDM-LVEKD 65 (108)
Q Consensus 10 ~~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~v-lIE~~ 65 (108)
.+..+...| ||++| .||+ -+.+|+..+++..... |...+ |+|.-
T Consensus 147 LLr~va~~gkPVilK-----~Gms--~t~~ei~~ave~i~~~-----Gn~~iiL~erg 192 (298)
T 3fs2_A 147 LLIAAARTGRVVNVK-----KGQF--LAPWDMKNVLAKITES-----GNPNVLATERG 192 (298)
T ss_dssp HHHHHHHTTSEEEEE-----CCTT--CCGGGHHHHHHHHHTT-----TCCCEEEEECC
T ss_pred HHHHHHccCCcEEEe-----CCCC--CCHHHHHHHHHHHHHc-----CCCeEEEEECC
Confidence 344456889 99999 6662 4678888888877664 34555 44543
No 91
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=25.73 E-value=17 Score=23.70 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=16.4
Q ss_pred ccHHHHHHHhhhcC-CeEEEc
Q psy11786 5 KAFSRLMIFNSIHG-PICQRL 24 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp 24 (108)
+.+..+..+|+++| |+++-|
T Consensus 72 ~Na~~ais~ArklG~~~~l~p 92 (124)
T 1wjo_A 72 NNAKYAVSMARRIGARVYALP 92 (124)
T ss_dssp HHHHHHHHHHHHTCCSCCCCH
T ss_pred HHHHHHHHHHHHcCCCcccCH
Confidence 34566889999999 999987
No 92
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=24.46 E-value=1.1e+02 Score=23.25 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=29.0
Q ss_pred HHHhhhcC-CeEEEcCCCceeeEEeCCHHHHHHHHHHHhhhHhhhcCCCc-EEEeecC
Q psy11786 11 MIFNSIHG-PICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDD-MLVEKDI 66 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~-vlIE~~i 66 (108)
+..+...| ||++| .|+. -+.+|+..|++..... |... +|+|+.+
T Consensus 206 L~~va~~~kPVilk-----~G~~--~tl~ei~~Ave~i~~~-----GN~~viLceRG~ 251 (350)
T 1vr6_A 206 LSKAGSYNKPVLLK-----RGFM--NTIEEFLLSAEYIANS-----GNTKIILCERGI 251 (350)
T ss_dssp HHHHHTTCSCEEEE-----CCTT--CCHHHHHHHHHHHHHT-----TCCCEEEEECCB
T ss_pred HHHHHccCCcEEEc-----CCCC--CCHHHHHHHHHHHHHC-----CCCeEEEEeCCC
Confidence 34445789 99999 5543 3678888888877654 3444 4556555
No 93
>2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase, hydrolase, glycosidase, glycoside hydrolase family 26; HET: BGC NOY; 1.20A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A*
Probab=24.44 E-value=56 Score=23.66 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHHhhhcC-CeEEEcC---CCc---eeeE---EeCCHHHHHHHHHHHhhhH
Q psy11786 7 FSRLMIFNSIHG-PICQRLV---AEV---VACE---WLLTKDAIEENFKRAGPKL 51 (108)
Q Consensus 7 ~~~~~~~~~~~g-Pv~vKp~---~gG---~G~~---iV~~~~el~~a~~~a~~~a 51 (108)
++......+.+| ||+++|. .|+ =|.. ...+.+++..+++.....-
T Consensus 88 i~~~A~~l~~~g~pV~~R~~hE~nG~Wf~Wg~~~~~~~~~p~~y~~~wr~~~~~~ 142 (283)
T 2v3g_A 88 ITRMAQDMKAYGKEIWLRPLHEANGDWYPWAIGYSSRVNTNETYIAAFRHIVDIF 142 (283)
T ss_dssp HHHHHHHHHHHCSCEEEEESCCTTSSSSTTSTTCTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEeccccCCCcccCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 344455567789 9999995 333 2321 2357888888888866554
No 94
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=22.78 E-value=1.1e+02 Score=19.21 Aligned_cols=60 Identities=8% Similarity=-0.028 Sum_probs=38.4
Q ss_pred ccHHHHHHHhhhcC-CeEEEcCCCc----ee-------------------eEEeCCHHHHHHHHHHHhhhHhh-hcCCCc
Q psy11786 5 KAFSRLMIFNSIHG-PICQRLVAEV----VA-------------------CEWLLTKDAIEENFKRAGPKLWL-FFGKDD 59 (108)
Q Consensus 5 ~~~~~~~~~~~~~g-Pv~vKp~~gG----~G-------------------~~iV~~~~el~~a~~~a~~~a~~-~fgd~~ 59 (108)
+..+++.+...+.| |-+=--...| .| +.+|-++++++..++.....+.. .+||..
T Consensus 11 ~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a~Tg~~GDGk 90 (116)
T 4aff_A 11 FKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGENGDGK 90 (116)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSSTTCEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCeE
Confidence 45567767777788 7765444444 23 23445677778877777776654 678888
Q ss_pred EEEee
Q psy11786 60 MLVEK 64 (108)
Q Consensus 60 vlIE~ 64 (108)
+||-.
T Consensus 91 IFV~~ 95 (116)
T 4aff_A 91 IFVSP 95 (116)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88744
No 95
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=22.50 E-value=68 Score=24.01 Aligned_cols=23 Identities=4% Similarity=-0.198 Sum_probs=17.1
Q ss_pred HHHhhhcC-CeEEEcCCCceeeEEe
Q psy11786 11 MIFNSIHG-PICQRLVAEVVACEWL 34 (108)
Q Consensus 11 ~~~~~~~g-Pv~vKp~~gG~G~~iV 34 (108)
.+.-.++| +-++| ++||+|+.++
T Consensus 160 r~~L~~lGL~~f~K-TSGgkGlHV~ 183 (303)
T 2iru_A 160 RDLLADIGLVTFPV-TSGSKGLHLY 183 (303)
T ss_dssp HHHHHTTTCCCEEE-ECSSSCEEEE
T ss_pred HHHHHHcCCccceE-ccCCCeEEEE
Confidence 34446799 99999 4566888886
No 96
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=21.82 E-value=93 Score=24.66 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=26.2
Q ss_pred eeeEEeCCHHHHHHHHHHHhhhHhhhcCCCcEEEeecCCC
Q psy11786 29 VACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR 68 (108)
Q Consensus 29 ~G~~iV~~~~el~~a~~~a~~~a~~~fgd~~vlIE~~i~~ 68 (108)
.+++ |++.++|.++++.+...+... +.+.+||=.+..
T Consensus 544 ~~~~-v~~~~el~~al~~a~~~~~~~--~gp~lIev~~~~ 580 (616)
T 2pan_A 544 KAIR-VFKPEDIAPAFEQAKALMAQY--RVPVVVEVILER 580 (616)
T ss_dssp EEEE-ECSGGGHHHHHHHHHHHHHHH--CSCEEEEEEBCS
T ss_pred eEEE-ECCHHHHHHHHHHHHhhcccC--CCcEEEEEEecc
Confidence 4444 689999999999988732111 678888877754
No 97
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=21.32 E-value=41 Score=26.48 Aligned_cols=50 Identities=6% Similarity=0.079 Sum_probs=31.8
Q ss_pred C-eEEEcCCCc--eeeEEeCCHHHHHHHHHHHhh---hHhhhcCCCcEEEeecCCC
Q psy11786 19 P-ICQRLVAEV--VACEWLLTKDAIEENFKRAGP---KLWLFFGKDDMLVEKDIGR 68 (108)
Q Consensus 19 P-v~vKp~~gG--~G~~iV~~~~el~~a~~~a~~---~a~~~fgd~~vlIE~~i~~ 68 (108)
| ||||+.+|- -|+--|++.+|+..-=++.+. .++.+.--+.|+|.+-+..
T Consensus 278 PfV~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T 333 (432)
T 3k1t_A 278 PFVIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYT 333 (432)
T ss_dssp CCEEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCC
T ss_pred ceEEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcch
Confidence 5 599999998 566668999887643333332 2233333466888777754
Done!