RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11786
(108 letters)
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 81.7 bits (203), Expect = 2e-19
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 55 FGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
FG D++ +EK + PRHIEVQILGDK+G+VVHLY+RDC +
Sbjct: 196 FGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSV 235
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 77.9 bits (192), Expect = 3e-18
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 38 DAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ + F+RA + FG D++ VEK I RPRHIEVQ+LGDK+G+VVHL++RDC +
Sbjct: 175 ADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSV 231
>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 77.8 bits (192), Expect = 4e-18
Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 37 KDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ + E F+RA + FG D++ VEK + P+HIEVQILGD +G+VVHL++RDC +
Sbjct: 180 EADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSV 237
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 72.3 bits (178), Expect = 3e-16
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 55 FGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
FG D + +EK + +PRHIE+Q+ D++G+VVHL +RDC +
Sbjct: 192 FGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSL 231
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 450
Score = 71.2 bits (175), Expect = 6e-16
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 38 DAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
A E N KRA FFG +M +EK I PRHIE+Q+L D +G+ V+L++R+C +
Sbjct: 179 KAFESNKKRAA----NFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSV 231
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 451
Score = 70.6 bits (174), Expect = 1e-15
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 55 FGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
FG + +EK + PRHIE+Q+L D +G+ +HL +RDC +
Sbjct: 192 FGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSL 231
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
Length = 447
Score = 68.6 bits (168), Expect = 6e-15
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 42 ENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ F A + FG D M +EK I P+HIE QILGD YG+VVHL +RDC +
Sbjct: 179 KAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSL 231
>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated.
Length = 472
Score = 66.7 bits (163), Expect = 3e-14
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+++ +E+NF R + FG ++ +EK I P+HIEVQIL D +G+VVHL++RDC I
Sbjct: 172 SREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSI 230
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 66.5 bits (163), Expect = 3e-14
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPIY 95
++ +E F+ A + FG + +EK I PRHIEVQ+LGD +G+V+HL +RDC I
Sbjct: 173 NEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQ 232
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
subunit. This model represents the biotin carboxylase
subunit found usually as a component of acetyl-CoA
carboxylase. Acetyl-CoA carboxylase is designated EC
6.4.1.2 and this component, biotin carboxylase, has its
own designation, EC 6.3.4.14. Homologous domains are
found in eukaryotic forms of acetyl-CoA carboxylase and
in a number of other carboxylases (e.g. pyruvate
carboxylase), but seed members and trusted cutoff are
selected so as to exclude these. In some systems, the
biotin carboxyl carrier protein and this protein (biotin
carboxylase) may be shared by different
carboxyltransferases. However, this model is not
intended to identify the biotin carboxylase domain of
propionyl-coA carboxylase. The model should hit the full
length of proteins, except for chloroplast transit
peptides in plants. If it hits a domain only of a longer
protein, there may be a problem with the identification
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 449
Score = 63.6 bits (155), Expect = 3e-13
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
D + ++ + FG D + +EK I PRH+E+Q+L DKYG+ ++L +RDC I
Sbjct: 173 EPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSI 231
>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 63.5 bits (155), Expect = 3e-13
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 55 FGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
FG + +EK + +PRHIE+QIL DK+G+V+HL DR+C I
Sbjct: 192 FGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSI 231
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
Length = 478
Score = 63.3 bits (154), Expect = 4e-13
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 37 KDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPIYA 96
++ +E F+ + +F D++ +EK + PRHIE QILGD YG+++HL +RDC I
Sbjct: 174 EEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQR 233
Query: 97 --EKISESHP 104
+K+ E P
Sbjct: 234 RHQKVIEIAP 243
>gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated.
Length = 445
Score = 60.9 bits (148), Expect = 3e-12
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDC 92
+ +E + A + FG M +EK I PRHIEVQILGDK+G+V+H+ +RDC
Sbjct: 175 DESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDC 231
>gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP
binding domain. Carbamoyl-phosphate synthase catalyzes
the ATP-dependent synthesis of carbamyl-phosphate from
glutamine or ammonia and bicarbonate. This important
enzyme initiates both the urea cycle and the
biosynthesis of arginine and/or pyrimidines. The
carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes
is a heterodimer of a small and large chain. The small
chain promotes the hydrolysis of glutamine to ammonia,
which is used by the large chain to synthesise carbamoyl
phosphate. See pfam00988. The small chain has a GATase
domain in the carboxyl terminus. See pfam00117. The ATP
binding domain (this one) has an ATP-grasp fold.
Length = 211
Score = 56.5 bits (137), Expect = 4e-11
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDC 92
++ + E F A + FG +LVEK + P+HIE Q+L D +G+ + + +R+C
Sbjct: 59 NEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNREC 115
>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase
subunit; Provisional.
Length = 467
Score = 55.1 bits (133), Expect = 3e-10
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 38 DAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPIY-- 95
+ A + FG + +E+ I R RHIEVQILGD VVHL++R+C +
Sbjct: 178 AQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRR 236
Query: 96 AEKISESHP 104
+KI E P
Sbjct: 237 RQKILEEAP 245
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family
are ATP-dependent urea carboxylase, including
characterized members from Oleomonas sagaranensis (alpha
class Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the
yeast enzyme is not included in this model and is
represented by an adjacent gene in Oleomonas
sagaranensis. The fusion of urea carboxylase and
allophanate hydrolase is designated urea amidolyase. The
enzyme from Oleomonas sagaranensis was shown to be
highly active on acetamide and formamide as well as urea
[Central intermediary metabolism, Nitrogen metabolism].
Length = 1201
Score = 52.3 bits (126), Expect = 3e-09
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 54 FFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDC 92
FFG + +E+ + RH+EVQI GD G VV L +RDC
Sbjct: 189 FFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDC 227
>gnl|CDD|128345 smart00030, CLb, CLUSTERIN Beta chain.
Length = 206
Score = 28.2 bits (63), Expect = 0.71
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 21 CQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFFG-KDDMLVEKDIGRPRHIEV 74
C + A V L +EE ++ P + G + D L+E D + ++V
Sbjct: 99 CMKFYARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDRIDSLLENDRQQSHVLDV 153
>gnl|CDD|172015 PRK13375, pimE, mannosyltransferase; Provisional.
Length = 409
Score = 26.6 bits (59), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 10 LMIFNSIHGPICQRLVAEVVACEWLLT 36
LMI+ +HGP +R A V+ WL
Sbjct: 322 LMIW-LLHGPWRERPGARVLGWGWLAL 347
>gnl|CDD|220638 pfam10230, DUF2305, Uncharacterized conserved protein (DUF2305).
This family of proteins is conserved from plants to
humans. The function is unknown.
Length = 260
Score = 26.5 bits (59), Expect = 3.2
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 37 KDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVV 85
D + +LW ++G +D V R ++ G GDV
Sbjct: 204 DDEFIKAANENEIRLWFYYGTNDHWVPVST---RDELKELYGRGEGDVR 249
>gnl|CDD|239544 cd03461, 1,2-HQD, Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes
the ring cleavage of hydroxyquinol
(1,2,4-trihydroxybenzene), a intermediate in the
degradation of a large variety of aromatic compounds
including some polychloro- and nitroaromatic pollutants,
to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to
the aromatic dioxygenase family, a family of mononuclear
non-heme intradiol-cleaving enzymes.
Length = 277
Score = 26.0 bits (58), Expect = 4.2
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 68 RPRHIEVQILGDKYGDVV-HLYDRDCP 93
RP HI + Y +V ++D P
Sbjct: 206 RPAHIHFMVTAPGYRTLVTQIFDSGDP 232
>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase;
Provisional.
Length = 259
Score = 25.0 bits (55), Expect = 8.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 5 KAFSRLMIFNSIHGPICQ 22
+ FSRLMI + I G I Q
Sbjct: 121 REFSRLMIRDGIQGRIIQ 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.440
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,592,603
Number of extensions: 484021
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 23
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)