RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11786
(108 letters)
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 85.1 bits (211), Expect = 7e-21
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
++ + + A + FGKD++ +EK + R RH+E QILGD +G+VVHL++RDC +
Sbjct: 192 SEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSV 250
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 84.7 bits (210), Expect = 8e-21
Identities = 23/59 (38%), Positives = 41/59 (69%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ +E+ F RA + FG ++ +E+ I P+HIEVQ++GD++G++VHL++RDC +
Sbjct: 176 EESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSV 234
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 84.5 bits (210), Expect = 9e-21
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+K ++E F+RA + FG D++ VEK I P+HIEVQILGD G++VHLY+RDC +
Sbjct: 178 SKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSV 236
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A
{Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Length = 451
Score = 79.4 bits (197), Expect = 4e-19
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
++ + +N+++A + FG+ D+L+EK I P+HIE Q+LGDK+G+V+HL +RDC I
Sbjct: 172 NEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSI 230
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
aureus}
Length = 451
Score = 79.0 bits (196), Expect = 6e-19
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ +E F+ + FG + +EK I RHIE+QI+GD YG+V+HL +RDC I
Sbjct: 172 DEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTI 230
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 78.9 bits (195), Expect = 9e-19
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 55 FGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
FG D + +EK + +PRHIE+Q+L D +G+ ++L +R+C I
Sbjct: 192 FGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSI 231
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 77.7 bits (192), Expect = 2e-18
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 55 FGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ + K GR RH+EVQ+L D+YG + L+ RDC +
Sbjct: 270 IPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSV 309
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 77.5 bits (192), Expect = 2e-18
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ +E+ + A + FG M +EK I PRHIEVQ++GD +G+V+H+ +RDC +
Sbjct: 177 NEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSM 235
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 77.7 bits (192), Expect = 2e-18
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 55 FGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
FG MLVEK + +PRH+E+Q+ D++G ++L +RDC I
Sbjct: 218 FGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSI 257
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 76.6 bits (189), Expect = 6e-18
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 54 FFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+FG + +E+ + RH+E+Q++GD +G + + +RDC +
Sbjct: 219 YFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSL 259
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 76.0 bits (188), Expect = 8e-18
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ ++ + F D + +EK + PRH+E+Q+L D G+ ++L +RDC +
Sbjct: 174 GDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSM 232
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 75.4 bits (186), Expect = 1e-17
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ + F++ + + + K RH+EVQIL D+YG+ V L+ RDC I
Sbjct: 265 SAEDFPILFRQVQSE----IPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSI 319
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 75.0 bits (185), Expect = 2e-17
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 55 FGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
+ + K RH+EVQIL D+YG+ V L+ RDC I
Sbjct: 264 IPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSI 303
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 44.8 bits (107), Expect = 2e-07
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 36 TKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILG 78
+ + F+ + + FG D +L+EK I PRHI G
Sbjct: 66 DDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSSG 108
>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and
functiona analyses, riken structural genomics/proteomics
initiative; 2.00A {Aquifex aeolicus}
Length = 137
Score = 26.2 bits (57), Expect = 2.1
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 60 MLVEKDIGRPRHIEVQILGD 79
E D RP+ + ++I+G+
Sbjct: 118 FYAEFDGQRPKRVVIKIIGE 137
>2p6h_A Hypothetical protein; structural genomics, unknown function,
NPPSFA, national PROJ protein structural and functional
analyses; 1.95A {Aeropyrum pernix}
Length = 134
Score = 25.8 bits (56), Expect = 2.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 60 MLVEKDIGRPRHIEVQILGD 79
+ VE D R R + + LG+
Sbjct: 115 LFVEMDGPRERTVNLLYLGE 134
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding
protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}
Length = 134
Score = 25.9 bits (56), Expect = 2.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 60 MLVEKDIGRPRHIEVQILGD 79
+L+E D R R + V+ +G+
Sbjct: 115 ILLEFDGPRTRTVLVKSMGE 134
>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase,
structural genomics, JO center for structural genomics,
JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1
Length = 151
Score = 25.8 bits (56), Expect = 2.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 60 MLVEKDIGRPRHIEVQILGD 79
E D RP+ + V+I+G+
Sbjct: 132 FYGEFDGMRPKRVLVKIIGE 151
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 25.7 bits (57), Expect = 3.2
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 48 GPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLY 88
GP W G + K + +H + KYG + +
Sbjct: 28 GPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMK 68
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 25.5 bits (55), Expect = 3.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 39 AIEENFKRAGPKLWLFFGKD 58
E+ + R P L L G +
Sbjct: 290 LAEDGYLRRSPNLLLAPGGE 309
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for
ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides}
SCOP: c.30.1.2 d.142.1.1
Length = 377
Score = 25.3 bits (56), Expect = 4.6
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 61 LVEKDIGRPRHIEVQILGD 79
L+E+ + R +EV ++G+
Sbjct: 214 LIEEAVNGARELEVGVIGN 232
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB:
2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Length = 322
Score = 25.2 bits (56), Expect = 5.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 61 LVEKDIGRPRHIEVQILGDKYGDV 84
+VEK + R +EV +LG+ +G+
Sbjct: 190 VVEKALSPVRELEVGVLGNVFGEA 213
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR;
2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A*
3mzs_A*
Length = 487
Score = 25.0 bits (55), Expect = 5.9
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 48 GPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLY 88
P + E + H+ KYG +
Sbjct: 13 SPGDNGWLNLYHFWRETGTHKV-HLHHVQNFQKYGPIYREK 52
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 6.5
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 56 GKDDMLVEKDIGR--PRHIEVQILGDKYGDVVH--LYDRDCPIYAEK 98
K + LV I P+ E ++ KY D++ L D I+ E
Sbjct: 539 PKYERLV-NAILDFLPKI-EENLICSKYTDLLRIALMAEDEAIFEEA 583
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic
transcription repressor, acetylation, carbohydrate
metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A
3v2u_A* 3btu_A
Length = 438
Score = 24.9 bits (54), Expect = 6.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 59 DMLVEKDIGRPRHIEVQILGDKYGD 83
+++ + IG IE+ G YG
Sbjct: 166 ELISQGYIGDINSIEIAGNGGWYGY 190
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics,
PSI-2, protein structur initiative; 2.30A {Pseudomonas
syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Length = 276
Score = 24.6 bits (53), Expect = 8.8
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 66 IGRPRHIEVQ-ILGDKYGDVVHLYDRDCPIY 95
IG P + + + +GD V + + P++
Sbjct: 199 IGEPGRLGINDLSRPDFGDAVSIKPGEVPVF 229
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal
domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Length = 261
Score = 24.5 bits (54), Expect = 8.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 9 RLMIFNSIHGPICQRLVAE-----VVACEWLLTKDAIEE 42
R+++ + G I QRL+ + V+A L+ AI
Sbjct: 155 RIVLSFILQGIISQRLLPKIGGGRVLAYGLLIPNTAIRN 193
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 24.6 bits (54), Expect = 9.3
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 24 LVAEVVACEWLLTKDAIEENFKRAGPKLWLFFGKDDMLVEKDIGR 68
++A + ++ + A+ + A + F D+ + + GR
Sbjct: 183 VLAILKGNQFTINTTALTDFSSIASNRKMGFLLADEAMPTMEKGR 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.440
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,693,446
Number of extensions: 91183
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 37
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)