RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11786
         (108 letters)



>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2
           {Aquifex aeolicus [TaxId: 63363]}
          Length = 214

 Score = 41.0 bits (95), Expect = 5e-06
 Identities = 24/40 (60%), Positives = 33/40 (82%)

Query: 55  FGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLYDRDCPI 94
           FG+ D+L+EK I  P+HIE Q+LGDK+G+V+HL +RDC I
Sbjct: 77  FGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSI 116


>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
           large subunit ATP-binding domains {Escherichia coli
           [TaxId: 562]}
          Length = 259

 Score = 38.5 bits (89), Expect = 5e-05
 Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 12/77 (15%)

Query: 41  EENFKRAGPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDV------------VHLY 88
           E + +R             +L++  +     ++V  + D    +            VH  
Sbjct: 55  EADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSG 114

Query: 89  DRDCPIYAEKISESHPK 105
           D  C + A  +S+    
Sbjct: 115 DSACSLPAYTLSQEIQD 131


>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
           ribonucleotide synthetase PurP {Methanocaldococcus
           jannaschii [TaxId: 2190]}
          Length = 238

 Score = 30.1 bits (67), Expect = 0.035
 Identities = 4/73 (5%), Positives = 18/73 (24%), Gaps = 13/73 (17%)

Query: 36  TKDAIEENFKRA-GPKLWLFFGKDDMLVEKDIGRPR------------HIEVQILGDKYG 82
           + +   +  +      +       +  +E+ +                 +E+  +  +Y 
Sbjct: 48  STEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYE 107

Query: 83  DVVHLYDRDCPIY 95
             +    R     
Sbjct: 108 SNIDGLVRIPAKD 120


>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 290

 Score = 25.6 bits (56), Expect = 1.2
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 39  AIEENFKRAGPKLWLFFG 56
             E+ + R  P L L  G
Sbjct: 272 LAEDGYLRRSPNLLLAPG 289


>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 472

 Score = 25.8 bits (55), Expect = 1.5
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 8/48 (16%)

Query: 44 FKRA---GPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLY 88
          FK+    GP    F G  ++L      +   +       KYG V   Y
Sbjct: 6  FKKLGIPGPTPLPFLG--NIL---SYHKGFCMFDMECHKKYGKVWGFY 48


>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 139

 Score = 24.9 bits (54), Expect = 2.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 60  MLVEKDIGRPRHIEVQILGD 79
              E D  RP+ + V+I+G+
Sbjct: 120 FYGEFDGMRPKRVLVKIIGE 139


>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis
           mellifera) [TaxId: 7460]}
          Length = 134

 Score = 24.4 bits (53), Expect = 2.8
 Identities = 7/44 (15%), Positives = 18/44 (40%)

Query: 12  IFNSIHGPICQRLVAEVVACEWLLTKDAIEENFKRAGPKLWLFF 55
           ++ ++    C +L   V  C        +     ++ PK++ +F
Sbjct: 86  MYFNLIDTKCYKLEHPVTGCGERTEGRCLHYTVDKSKPKVYQWF 129


>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 467

 Score = 24.3 bits (51), Expect = 4.0
 Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 4/41 (9%)

Query: 48 GPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLY 88
          GP      G    +  KDI       +  L   YG V  LY
Sbjct: 7  GPTPLPVIGNILQIGIKDI----SKSLTNLSKVYGPVFTLY 43


>d1uura2 b.2.5.5 (A:360-576) STAT homologue {Dictyostelium
           discoideum [TaxId: 44689]}
          Length = 217

 Score = 23.4 bits (50), Expect = 7.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 93  PIYAEKISESHPKSLN 108
           P+ A  I +SHP + N
Sbjct: 44  PVKATMICDSHPTNKN 59


>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
          megaterium [TaxId: 1404]}
          Length = 453

 Score = 23.5 bits (49), Expect = 7.6
 Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 4/41 (9%)

Query: 48 GPKLWLFFGKDDMLVEKDIGRPRHIEVQILGDKYGDVVHLY 88
           PK +       +L            +  + D+ G++    
Sbjct: 5  QPKTFGELKNLPLLNTDKP----VQALMKIADELGEIFKFE 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,044
Number of extensions: 17682
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 13
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.8 bits)