Query psy11787
Match_columns 100
No_of_seqs 122 out of 436
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:56:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00805 oat sodium-independe 100.0 2.6E-34 5.6E-39 240.7 7.0 92 9-100 539-632 (633)
2 KOG3626|consensus 100.0 4.3E-32 9.3E-37 232.7 4.9 92 9-100 607-699 (735)
3 PF03137 OATP: Organic Anion T 99.9 3.2E-29 7E-34 207.9 0.0 68 7-74 470-539 (539)
4 PF03209 PUCC: PUCC protein; 92.8 0.17 3.6E-06 42.1 4.2 52 16-84 117-168 (403)
5 TIGR00893 2A0114 d-galactonate 87.5 0.4 8.7E-06 35.2 2.0 38 13-50 336-373 (399)
6 TIGR00881 2A0104 phosphoglycer 87.3 0.44 9.5E-06 35.2 2.1 38 13-50 335-372 (379)
7 TIGR00900 2A0121 H+ Antiporter 86.6 0.21 4.5E-06 36.8 0.0 39 12-50 325-363 (365)
8 TIGR00891 2A0112 putative sial 86.6 0.35 7.6E-06 36.3 1.3 36 15-50 355-390 (405)
9 TIGR00880 2_A_01_02 Multidrug 84.6 0.47 1E-05 29.7 1.0 37 13-49 76-112 (141)
10 PRK11646 multidrug resistance 83.1 0.69 1.5E-05 36.3 1.5 38 13-50 322-359 (400)
11 TIGR02332 HpaX 4-hydroxyphenyl 82.3 0.57 1.2E-05 37.0 0.8 35 16-50 361-395 (412)
12 cd06174 MFS The Major Facilita 81.6 0.71 1.5E-05 33.5 1.0 38 12-49 289-326 (352)
13 PRK11551 putative 3-hydroxyphe 81.0 0.67 1.5E-05 35.6 0.7 39 13-51 333-371 (406)
14 TIGR00883 2A0106 metabolite-pr 80.9 0.53 1.2E-05 34.9 0.1 37 14-50 338-375 (394)
15 TIGR00897 2A0118 polyol permea 80.3 1.2 2.6E-05 34.7 1.9 37 14-50 340-376 (402)
16 TIGR00711 efflux_EmrB drug res 80.1 1.1 2.4E-05 35.0 1.7 41 11-51 371-411 (485)
17 TIGR00890 2A0111 Oxalate/Forma 79.6 0.79 1.7E-05 33.8 0.7 37 14-50 321-357 (377)
18 PRK12307 putative sialic acid 79.3 0.7 1.5E-05 35.7 0.4 38 14-51 347-384 (426)
19 PRK14995 methyl viologen resis 78.2 1.1 2.4E-05 36.3 1.2 42 11-52 374-415 (495)
20 PRK11273 glpT sn-glycerol-3-ph 77.5 1.4 3E-05 35.1 1.6 38 13-50 372-410 (452)
21 PRK11195 lysophospholipid tran 76.0 0.73 1.6E-05 36.1 -0.4 37 14-50 114-150 (393)
22 TIGR00887 2A0109 phosphate:H+ 74.6 3.6 7.8E-05 33.2 3.3 42 14-55 418-459 (502)
23 TIGR00879 SP MFS transporter, 74.6 1.1 2.5E-05 33.9 0.4 37 14-50 409-445 (481)
24 TIGR00895 2A0115 benzoate tran 73.8 1.3 2.9E-05 32.9 0.5 37 12-48 362-398 (398)
25 KOG2615|consensus 73.4 0.9 1.9E-05 38.4 -0.5 34 16-49 148-181 (451)
26 PF07690 MFS_1: Major Facilita 72.7 1.6 3.5E-05 32.0 0.8 39 12-50 109-147 (352)
27 TIGR01299 synapt_SV2 synaptic 72.2 1.1 2.3E-05 39.6 -0.3 38 14-51 674-711 (742)
28 TIGR00889 2A0110 nucleoside tr 71.1 1 2.3E-05 35.8 -0.6 38 13-50 333-371 (418)
29 TIGR00788 fbt folate/biopterin 71.0 10 0.00022 30.9 5.1 69 9-90 372-440 (468)
30 KOG1330|consensus 70.7 3.4 7.3E-05 35.4 2.3 38 14-51 375-413 (493)
31 PRK11663 regulatory protein Uh 69.9 2 4.4E-05 33.9 0.8 37 14-50 363-399 (434)
32 PRK10489 enterobactin exporter 69.9 2.1 4.6E-05 33.3 0.9 37 14-50 338-374 (417)
33 PRK09556 uhpT sugar phosphate 69.0 2.8 6.1E-05 33.4 1.5 39 13-51 374-413 (467)
34 PRK12382 putative transporter; 67.8 2 4.3E-05 32.9 0.4 37 14-50 328-364 (392)
35 TIGR00892 2A0113 monocarboxyla 67.0 2 4.4E-05 34.4 0.2 37 14-50 359-395 (455)
36 cd06174 MFS The Major Facilita 65.5 3.5 7.6E-05 29.8 1.2 36 15-50 114-149 (352)
37 TIGR00712 glpT glycerol-3-phos 63.6 3.1 6.6E-05 32.9 0.7 37 14-50 371-408 (438)
38 PRK03545 putative arabinose tr 63.0 4.2 9E-05 31.3 1.3 35 16-50 321-355 (390)
39 TIGR00901 2A0125 AmpG-related 61.5 4 8.7E-05 30.8 1.0 38 13-50 108-145 (356)
40 TIGR00900 2A0121 H+ Antiporter 61.4 2.4 5.1E-05 31.2 -0.3 37 14-50 118-154 (365)
41 TIGR02718 sider_RhtX_FptX side 61.2 7.2 0.00016 30.0 2.3 39 12-50 327-366 (390)
42 PRK03893 putative sialic acid 61.1 2.2 4.7E-05 33.7 -0.5 36 15-50 393-428 (496)
43 TIGR00896 CynX cyanate transpo 60.9 3.6 7.8E-05 31.1 0.6 38 14-51 312-349 (355)
44 PRK15075 citrate-proton sympor 60.8 5.3 0.00012 31.5 1.6 38 14-51 357-395 (434)
45 TIGR00711 efflux_EmrB drug res 60.8 4.4 9.6E-05 31.7 1.1 39 13-51 115-153 (485)
46 PRK05122 major facilitator sup 58.8 4 8.7E-05 31.3 0.6 38 13-50 327-364 (399)
47 PRK09874 drug efflux system pr 57.6 6.2 0.00014 30.0 1.4 37 14-50 337-373 (408)
48 PRK10054 putative transporter; 54.5 6.6 0.00014 30.8 1.1 35 15-50 325-359 (395)
49 PRK09952 shikimate transporter 54.3 7.1 0.00015 31.0 1.3 37 15-51 370-407 (438)
50 PF06637 PV-1: PV-1 protein (P 53.6 16 0.00035 30.8 3.3 29 61-93 17-47 (442)
51 PRK09874 drug efflux system pr 53.2 6.9 0.00015 29.8 1.0 37 14-50 132-168 (408)
52 PRK10504 putative transporter; 52.5 8 0.00017 30.5 1.3 37 15-51 380-416 (471)
53 PRK13751 putative mercuric tra 51.8 28 0.00061 24.4 3.9 38 57-94 74-111 (116)
54 PRK11663 regulatory protein Uh 51.4 5.9 0.00013 31.3 0.4 37 14-50 137-173 (434)
55 PRK03545 putative arabinose tr 49.6 7.3 0.00016 29.9 0.7 38 13-50 122-159 (390)
56 TIGR00891 2A0112 putative sial 49.4 9.7 0.00021 28.5 1.3 38 13-50 125-162 (405)
57 PRK14995 methyl viologen resis 48.7 5.9 0.00013 32.1 0.0 33 18-50 125-157 (495)
58 PRK10213 nepI ribonucleoside t 48.6 6.9 0.00015 30.6 0.4 37 14-50 134-170 (394)
59 PRK12382 putative transporter; 48.5 10 0.00022 29.0 1.3 37 14-50 138-174 (392)
60 PRK10489 enterobactin exporter 47.1 8.4 0.00018 29.9 0.7 37 14-50 136-172 (417)
61 PRK11646 multidrug resistance 46.4 9.3 0.0002 30.0 0.8 36 14-49 125-160 (400)
62 PF03825 Nuc_H_symport: Nucleo 46.3 9.8 0.00021 30.8 1.0 37 14-50 327-364 (400)
63 TIGR00895 2A0115 benzoate tran 46.1 7.4 0.00016 28.9 0.2 36 15-50 132-167 (398)
64 TIGR00894 2A0114euk Na(+)-depe 45.8 7.8 0.00017 30.6 0.3 37 14-50 157-193 (465)
65 TIGR00898 2A0119 cation transp 45.7 8.5 0.00018 30.6 0.5 33 13-45 435-467 (505)
66 TIGR00893 2A0114 d-galactonate 45.1 6.1 0.00013 28.9 -0.3 38 13-50 107-144 (399)
67 PRK06814 acylglycerophosphoeth 44.2 12 0.00026 33.3 1.3 37 14-50 134-170 (1140)
68 TIGR00710 efflux_Bcr_CflA drug 43.9 8.5 0.00018 28.8 0.3 37 14-50 119-155 (385)
69 TIGR00885 fucP L-fucose:H+ sym 43.9 19 0.00042 28.6 2.3 39 10-50 343-381 (410)
70 PRK10642 proline/glycine betai 43.6 14 0.0003 29.8 1.4 36 15-51 369-405 (490)
71 PRK10213 nepI ribonucleoside t 42.8 13 0.00028 29.1 1.1 37 14-51 331-367 (394)
72 PF02411 MerT: MerT mercuric t 42.5 48 0.001 23.0 3.8 42 57-98 74-115 (116)
73 TIGR00902 2A0127 phenyl propri 42.4 11 0.00023 29.2 0.6 36 16-51 320-356 (382)
74 TIGR00899 2A0120 sugar efflux 42.0 13 0.00028 27.7 1.0 34 17-50 316-349 (375)
75 PRK11102 bicyclomycin/multidru 41.1 10 0.00023 28.5 0.4 36 15-50 106-141 (377)
76 PRK09705 cynX putative cyanate 39.4 9.5 0.0002 29.7 -0.1 33 18-50 323-355 (393)
77 PRK10504 putative transporter; 39.0 12 0.00026 29.5 0.4 37 14-50 124-160 (471)
78 PRK09528 lacY galactoside perm 38.8 9.5 0.00021 29.7 -0.2 37 15-51 342-379 (420)
79 PF11700 ATG22: Vacuole efflux 38.1 49 0.0011 27.6 3.9 38 15-52 407-444 (477)
80 TIGR00897 2A0118 polyol permea 37.9 16 0.00034 28.4 0.9 37 13-49 130-167 (402)
81 PF12832 MFS_1_like: MFS_1 lik 37.8 20 0.00043 22.6 1.2 32 20-51 31-62 (77)
82 PRK05122 major facilitator sup 37.1 18 0.00039 27.7 1.1 39 13-51 137-175 (399)
83 TIGR00903 2A0129 major facilit 36.7 11 0.00024 29.6 -0.1 36 13-48 305-340 (368)
84 KOG3764|consensus 35.3 23 0.00051 30.2 1.6 33 18-50 190-222 (464)
85 TIGR00805 oat sodium-independe 34.9 28 0.00061 29.9 2.0 35 15-49 199-233 (633)
86 PRK10054 putative transporter; 34.6 15 0.00032 28.8 0.3 36 14-49 122-157 (395)
87 PRK11902 ampG muropeptide tran 34.6 20 0.00043 27.8 1.0 37 14-50 120-156 (402)
88 KOG2927|consensus 34.3 45 0.00097 27.8 3.0 33 61-93 176-208 (372)
89 PF03839 Sec62: Translocation 33.8 63 0.0014 24.9 3.6 30 64-93 100-129 (224)
90 PRK08633 2-acyl-glycerophospho 33.1 23 0.00049 31.3 1.2 37 14-50 129-165 (1146)
91 TIGR00712 glpT glycerol-3-phos 32.4 39 0.00084 26.6 2.3 35 14-48 144-178 (438)
92 TIGR00792 gph sugar (Glycoside 32.4 1.1E+02 0.0024 23.5 4.8 67 19-91 349-415 (437)
93 PRK03893 putative sialic acid 31.7 15 0.00033 28.9 -0.0 38 13-50 133-170 (496)
94 PRK10473 multidrug efflux syst 30.9 18 0.00039 27.7 0.2 36 15-50 118-153 (392)
95 TIGR00903 2A0129 major facilit 30.2 21 0.00045 28.1 0.5 36 14-49 104-139 (368)
96 PRK11043 putative transporter; 30.0 33 0.00072 26.3 1.6 36 14-50 322-357 (401)
97 PF03692 CxxCxxCC: Putative zi 29.6 22 0.00049 21.8 0.5 21 48-71 42-62 (85)
98 PRK03699 putative transporter; 28.5 30 0.00065 26.7 1.1 36 14-49 121-156 (394)
99 PRK15011 sugar efflux transpor 28.4 54 0.0012 25.3 2.5 34 17-50 333-366 (393)
100 PF10530 Toxin_35: Toxin with 27.9 39 0.00084 17.4 1.1 17 52-68 1-19 (23)
101 PRK03633 putative MFS family t 27.9 23 0.00049 27.2 0.3 38 14-51 311-348 (381)
102 PRK10406 alpha-ketoglutarate t 27.4 40 0.00086 26.5 1.6 34 15-50 363-398 (432)
103 PF07690 MFS_1: Major Facilita 27.4 20 0.00042 26.2 -0.1 31 11-41 322-352 (352)
104 PF02944 BESS: BESS motif; In 26.9 23 0.00051 19.4 0.2 22 4-25 5-26 (37)
105 KOG2615|consensus 26.1 35 0.00075 29.1 1.1 36 14-49 378-413 (451)
106 PRK11128 putative 3-phenylprop 25.5 52 0.0011 25.3 1.9 38 14-51 318-356 (382)
107 PF05977 MFS_3: Transmembrane 24.9 39 0.00084 28.6 1.2 35 15-49 130-164 (524)
108 COG2814 AraJ Arabinose efflux 24.5 67 0.0015 26.6 2.5 41 10-50 123-166 (394)
109 PRK12307 putative sialic acid 24.3 34 0.00074 26.3 0.7 36 14-49 132-167 (426)
110 PRK10091 MFS transport protein 22.9 49 0.0011 25.4 1.4 34 18-51 318-351 (382)
111 PRK11010 ampG muropeptide tran 22.1 44 0.00095 27.3 1.0 35 15-49 134-168 (491)
112 PRK10077 xylE D-xylose transpo 22.0 46 0.001 26.0 1.0 36 14-49 390-425 (479)
113 PRK11551 putative 3-hydroxyphe 21.8 36 0.00079 26.0 0.5 36 14-49 129-164 (406)
114 TIGR01272 gluP glucose/galacto 21.6 40 0.00086 25.8 0.6 33 18-50 40-72 (310)
115 PF00822 PMP22_Claudin: PMP-22 21.5 1.7E+02 0.0037 19.8 3.8 13 58-70 50-62 (166)
116 TIGR00894 2A0114euk Na(+)-depe 21.4 40 0.00087 26.6 0.6 34 18-51 390-423 (465)
117 PRK03633 putative MFS family t 21.2 39 0.00084 25.9 0.5 37 14-50 120-156 (381)
118 KOG2504|consensus 21.2 47 0.001 28.0 1.0 41 11-51 411-451 (509)
119 TIGR02332 HpaX 4-hydroxyphenyl 21.0 34 0.00074 26.9 0.2 37 13-49 121-157 (412)
120 PF13955 Fst_toxin: Toxin Fst, 20.5 23 0.00049 17.9 -0.6 12 37-48 3-14 (21)
121 COG2271 UhpC Sugar phosphate p 20.5 34 0.00075 29.1 0.1 17 35-51 299-315 (448)
No 1
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=100.00 E-value=2.6e-34 Score=240.65 Aligned_cols=92 Identities=24% Similarity=0.487 Sum_probs=88.6
Q ss_pred HHHHhhccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhcccccccccc-cCCccceeeccchhHHHHHHHHHHHHHH
Q psy11787 9 LCLNSYCGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDSACLVWESV-CGEKGACNLYDTDVFRVFYHEKCVLSIE 86 (100)
Q Consensus 9 ~~~~~lR~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~sCl~W~~~-Cg~~G~C~~Yd~~~l~~~~~~l~~~~k~ 86 (100)
..+++|||||+||||+|+|+|++ +|++|+|||||+||++||+||++|+++ ||+||+||+|||+++|++++++++++|.
T Consensus 539 ~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~sC~~W~~~~cg~~g~C~~Yd~~~l~~~~~~~~~~~~~ 618 (633)
T TIGR00805 539 LYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVSCLHWQTLCCGARGACRMYDNDNLRNIYLGLTIALRG 618 (633)
T ss_pred hheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhchhheeccccCCCCCceeeechHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998 999999999999999999999999975 9999999999999999999999999999
Q ss_pred HHHHHHHhhheeeC
Q psy11787 87 LELYWTPVVITRVQ 100 (100)
Q Consensus 87 ~s~l~~~l~~~~yk 100 (100)
+++++++++|++||
T Consensus 619 ~~~~~~~~~~~~~k 632 (633)
T TIGR00805 619 SGLLLLFFILILMK 632 (633)
T ss_pred HHHHHHHHHHheec
Confidence 99999999999997
No 2
>KOG3626|consensus
Probab=99.97 E-value=4.3e-32 Score=232.74 Aligned_cols=92 Identities=25% Similarity=0.429 Sum_probs=87.9
Q ss_pred HHHHhhccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhcccccccccccCCccceeeccchhHHHHHHHHHHHHHHH
Q psy11787 9 LCLNSYCGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDSACLVWESVCGEKGACNLYDTDVFRVFYHEKCVLSIEL 87 (100)
Q Consensus 9 ~~~~~lR~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~sCl~W~~~Cg~~G~C~~Yd~~~l~~~~~~l~~~~k~~ 87 (100)
..+++||||++||||+|+|+|++ +|+||+||+||+||++||++|++|+++|+++|+||+|||+.||+.|+++.+.+|.+
T Consensus 607 ~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~tCl~W~~~C~~~GsC~iYd~~~lr~~y~gl~~~~~~~ 686 (735)
T KOG3626|consen 607 GMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTTCLLWGKSCGSRGSCLIYDNDSLRYRYLGLHIILKVI 686 (735)
T ss_pred ceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhHHHHhhcccCCCCceeeechHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhheeeC
Q psy11787 88 ELYWTPVVITRVQ 100 (100)
Q Consensus 88 s~l~~~l~~~~yk 100 (100)
+++++++.++.+|
T Consensus 687 ~~i~~i~~~~v~r 699 (735)
T KOG3626|consen 687 ALILLIIDLYVWR 699 (735)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 3
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.95 E-value=3.2e-29 Score=207.89 Aligned_cols=68 Identities=32% Similarity=0.642 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhccccccccccc-CCccceeeccchhHH
Q psy11787 7 LKLCLNSYCGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDSACLVWESVC-GEKGACNLYDTDVFR 74 (100)
Q Consensus 7 ~~~~~~~lR~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~sCl~W~~~C-g~~G~C~~Yd~~~l~ 74 (100)
+...+++||||++||||+|+|+|++ +|++|+|||||+||++||++|++|+++| |+||+||+|||++||
T Consensus 470 ~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tCl~W~~~C~g~~G~C~~YD~~~lR 539 (539)
T PF03137_consen 470 VPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTCLLWQTNCCGSRGSCWLYDNDKLR 539 (539)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhhhhcCCCCCCCCCeEEEecchhcC
Confidence 4456889999999999999999998 9999999999999999999999999999 999999999999987
No 4
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=92.78 E-value=0.17 Score=42.10 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=45.7
Q ss_pred cCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcccccccccccCCccceeeccchhHHHHHHHHHHHH
Q psy11787 16 GLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSACLVWESVCGEKGACNLYDTDVFRVFYHEKCVLS 84 (100)
Q Consensus 16 ~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~sCl~W~~~Cg~~G~C~~Yd~~~l~~~~~~l~~~~ 84 (100)
.+|||+|+-+.++.|++.++|.+-+.+++|.+.|. |+.+.+-..+.+..+..
T Consensus 117 ~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~-----------------~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 117 LAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP-----------------FSPERLIQVIQGVALIA 168 (403)
T ss_pred cCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc-----------------cCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998 88888888777766654
No 5
>TIGR00893 2A0114 d-galactonate transporter.
Probab=87.52 E-value=0.4 Score=35.23 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=34.2
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.-..+|+++|+.+.|+.....-+|+.-+|.+.|.+.|.
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 336 ISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT 373 (399)
T ss_pred HHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence 34678999999999999998889999999999999985
No 6
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=87.30 E-value=0.44 Score=35.16 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=34.2
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..+.+|++.|+.+.|+......+|+.-+|.+.|.+.|.
T Consensus 335 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 335 ASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred HHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence 45678999999999999998888999999999999995
No 7
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=86.61 E-value=0.21 Score=36.84 Aligned_cols=39 Identities=15% Similarity=-0.002 Sum_probs=34.7
Q ss_pred HhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 12 NSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 12 ~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
...+.+|+|+|+.+.|+..+..-+|...||.+.|.++|.
T Consensus 325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 325 LLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999997778999999999999985
No 8
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=86.58 E-value=0.35 Score=36.33 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=32.5
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..+|+++|+.+.|+...+.-+|...||.++|.+.|.
T Consensus 355 ~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 355 EYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR 390 (405)
T ss_pred hhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999887778999999999999996
No 9
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=84.61 E-value=0.47 Score=29.75 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=32.4
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
..+.+|+++|+.+.|+..+...+|..-+|.+.|.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 3477899999999999998778899999999999875
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=83.10 E-value=0.69 Score=36.35 Aligned_cols=38 Identities=18% Similarity=-0.069 Sum_probs=34.7
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..+.+|+++|+-+.|+......+|..-||.+.|.+.|.
T Consensus 322 ~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 322 SASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 34789999999999999888889999999999999998
No 11
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=82.26 E-value=0.57 Score=36.95 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=32.2
Q ss_pred cCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 16 GLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 16 ~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+|+|+|+.+.|+....+-+|++.+|.++|.+.|.
T Consensus 361 ~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~ 395 (412)
T TIGR02332 361 SISLQARAIAIAVINATGNIGSALSPFLIGILKDA 395 (412)
T ss_pred ccchHHHHHHHHHHHHhhhhhhhhhhhhccccccc
Confidence 57889999999999997778999999999999996
No 12
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=81.58 E-value=0.71 Score=33.47 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=34.3
Q ss_pred HhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 12 NSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 12 ~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
...+.+|+|+|+.+.|+....+-+|...+|.+.|.+.|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567889999999999999888999999999999998
No 13
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=80.98 E-value=0.67 Score=35.56 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=33.7
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
.-+.+|+++|+.++|+.....-+|+.-||.+.|.++|..
T Consensus 333 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 333 APLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred HHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 346789999999999999977788999999999999753
No 14
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=80.86 E-value=0.53 Score=34.92 Aligned_cols=37 Identities=8% Similarity=-0.119 Sum_probs=31.7
Q ss_pred hccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~ 50 (100)
-..+|+++|+.+.|+... ...+|...+|.+.|.+.|.
T Consensus 338 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~ 375 (394)
T TIGR00883 338 PELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375 (394)
T ss_pred HHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence 356899999999998654 6778999999999999996
No 15
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=80.28 E-value=1.2 Score=34.73 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=32.0
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
+..+++++|+.+.|+.....-+|...||.+.|.++|.
T Consensus 340 ~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~ 376 (402)
T TIGR00897 340 FPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF 376 (402)
T ss_pred HHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456788999999999887788899999999999984
No 16
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=80.10 E-value=1.1 Score=35.01 Aligned_cols=41 Identities=5% Similarity=-0.053 Sum_probs=36.8
Q ss_pred HHhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 11 LNSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 11 ~~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
......+|+++++.+.|+..+.|.+|+.-||.++|.+.|+.
T Consensus 371 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 371 TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999964
No 17
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=79.63 E-value=0.79 Score=33.78 Aligned_cols=37 Identities=3% Similarity=-0.068 Sum_probs=32.8
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+.+|+++|+.+.|+.....-+|..-||.+.|.+.|.
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 357 (377)
T TIGR00890 321 SDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE 357 (377)
T ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3668999999999999987778999999999999873
No 18
>PRK12307 putative sialic acid transporter; Provisional
Probab=79.31 E-value=0.7 Score=35.68 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=32.4
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
-..+|++.|+.++|+.....-+|++.||++.|.+.|..
T Consensus 347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 46679999999999988765668999999999998764
No 19
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=78.25 E-value=1.1 Score=36.30 Aligned_cols=42 Identities=2% Similarity=-0.006 Sum_probs=37.5
Q ss_pred HHhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcccc
Q psy11787 11 LNSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSAC 52 (100)
Q Consensus 11 ~~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~sC 52 (100)
......+|+|+++.+.|+..+.|.+|+.-||.+.|+++|..-
T Consensus 374 ~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~~~ 415 (495)
T PRK14995 374 SAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSRSY 415 (495)
T ss_pred HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999998653
No 20
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=77.55 E-value=1.4 Score=35.06 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=31.7
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCc-chhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVP-CPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IP-gPIifG~~iD~ 50 (100)
....+|+++|+.+.|+...+..+|+.+ ||.++|.+.|.
T Consensus 372 ~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~ 410 (452)
T PRK11273 372 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 410 (452)
T ss_pred HHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 347889999999999998866666555 79999999985
No 21
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=75.97 E-value=0.73 Score=36.10 Aligned_cols=37 Identities=16% Similarity=0.015 Sum_probs=33.0
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+-+|+|+|+.|+|+..+...+|.+-||.+.|.++|.
T Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 114 TELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999888789999999999999884
No 22
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=74.65 E-value=3.6 Score=33.22 Aligned_cols=42 Identities=5% Similarity=-0.103 Sum_probs=35.5
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccccccc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSACLVW 55 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~sCl~W 55 (100)
--..|++.|+.++|+.....-+|++.+|.++|.++|..+-.|
T Consensus 418 ~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (502)
T TIGR00887 418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK 459 (502)
T ss_pred hccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccc
Confidence 346788999999999998666789999999999999777644
No 23
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=74.58 E-value=1.1 Score=33.89 Aligned_cols=37 Identities=8% Similarity=-0.055 Sum_probs=33.4
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-..+|+++|+.++|+..+...+|++-+|.++|.+.|.
T Consensus 409 ~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~ 445 (481)
T TIGR00879 409 SEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES 445 (481)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999998889999999999999987
No 24
>TIGR00895 2A0115 benzoate transport.
Probab=73.77 E-value=1.3 Score=32.95 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=31.9
Q ss_pred HhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhh
Q psy11787 12 NSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVV 48 (100)
Q Consensus 12 ~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~i 48 (100)
...+.+|+++|+.+.|+.....-+|..-||.+.|.++
T Consensus 362 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ll 398 (398)
T TIGR00895 362 LMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398 (398)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence 4567789999999999999877789999999999864
No 25
>KOG2615|consensus
Probab=73.41 E-value=0.9 Score=38.38 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=31.5
Q ss_pred cCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 16 GLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 16 ~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
.+++|+|+.++++..+.+-+|.|-||.|.|.+--
T Consensus 148 V~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 148 VVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5789999999999999999999999999999876
No 26
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=72.70 E-value=1.6 Score=31.98 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=33.3
Q ss_pred HhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 12 NSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 12 ~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..-+.+|+|+|+.++|+......+|.+-||++.|.+.|.
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 147 (352)
T PF07690_consen 109 LIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY 147 (352)
T ss_dssp HHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred cccccchhhhhhhccccccchhhhhhhcccchhhhhhhc
Confidence 345778999999999999988888999999999988854
No 27
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=72.17 E-value=1.1 Score=39.59 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=33.2
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
-..+|++.|+.|.|+.....-+|.+.||++.|.+++..
T Consensus 674 aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~ 711 (742)
T TIGR01299 674 VELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT 711 (742)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34579999999999999977799999999999988754
No 28
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=71.06 E-value=1 Score=35.76 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=33.1
Q ss_pred hhccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~ 50 (100)
.-+.+|+++|+-+.|+... ..-+|.+-||++.|.++|.
T Consensus 333 i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 333 VEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3467899999999999974 6778999999999999995
No 29
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=71.02 E-value=10 Score=30.85 Aligned_cols=69 Identities=9% Similarity=-0.039 Sum_probs=49.2
Q ss_pred HHHHhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcccccccccccCCccceeeccchhHHHHHHHHHHHHHHHH
Q psy11787 9 LCLNSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSACLVWESVCGEKGACNLYDTDVFRVFYHEKCVLSIELE 88 (100)
Q Consensus 9 ~~~~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~sCl~W~~~Cg~~G~C~~Yd~~~l~~~~~~l~~~~k~~s 88 (100)
......|.+|+++++-+-|+...++-+|.+-||++.|.+.|..-+ .|-.||+..+ ...+......+.
T Consensus 372 ~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~----------~~~~~~~~~~---~i~i~~~~~l~~ 438 (468)
T TIGR00788 372 FLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGI----------TCDNSNNLWL---LILGHSLAPLLP 438 (468)
T ss_pred HHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------CcccccchHH---HHHHHHHHHHHH
Confidence 356778999999999999999998899999999888888877542 2333444433 455555555544
Q ss_pred HH
Q psy11787 89 LY 90 (100)
Q Consensus 89 ~l 90 (100)
+.
T Consensus 439 l~ 440 (468)
T TIGR00788 439 LP 440 (468)
T ss_pred HH
Confidence 43
No 30
>KOG1330|consensus
Probab=70.68 E-value=3.4 Score=35.42 Aligned_cols=38 Identities=8% Similarity=-0.005 Sum_probs=33.9
Q ss_pred hccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhccc
Q psy11787 14 YCGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~s 51 (100)
+-+||++.|+.|..++-+ .-++|.-++|-+.|.+-|.-
T Consensus 375 l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 375 LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 457999999999999998 77999999998999997763
No 31
>PRK11663 regulatory protein UhpC; Provisional
Probab=69.90 E-value=2 Score=33.91 Aligned_cols=37 Identities=8% Similarity=-0.045 Sum_probs=33.0
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+..|+++|+.+.|+..+..-+|+.-+|.++|.++|.
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~ 399 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI 399 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence 4667789999999999998888999999999999995
No 32
>PRK10489 enterobactin exporter EntS; Provisional
Probab=69.90 E-value=2.1 Score=33.27 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=33.1
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+.+|++.|+.+.|+.....-+|..-||.++|.+.|.
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~ 374 (417)
T PRK10489 338 QTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM 374 (417)
T ss_pred HhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence 4667888999999999887788999999999999996
No 33
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=69.01 E-value=2.8 Score=33.44 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=33.3
Q ss_pred hhccCCCCCCchHHHHHHHHHH-hcCCcchhhhhhhhccc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLD-SSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rl-lG~IPgPIifG~~iD~s 51 (100)
....+|++.++.|.|+..+... .|..-+|.++|+++|.+
T Consensus 374 ~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~ 413 (467)
T PRK09556 374 AVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPT 413 (467)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccc
Confidence 4478999999999999988554 58899999999999963
No 34
>PRK12382 putative transporter; Provisional
Probab=67.82 E-value=2 Score=32.93 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=32.7
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+..|+|+|+.+.|+..+..-+|+.-||.+.|.+.|.
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~ 364 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS 364 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999987778999999999999985
No 35
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=66.95 E-value=2 Score=34.45 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=33.3
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+.+|+++++.+.|+.....-+|.+-||.++|.++|.
T Consensus 359 ~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~ 395 (455)
T TIGR00892 359 MDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA 395 (455)
T ss_pred HHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence 3568999999999999988888999999999999986
No 36
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=65.49 E-value=3.5 Score=29.84 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=31.6
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.-.|+|+|+.+.|+......+|.+-||++.|.+.|.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 149 (352)
T cd06174 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149 (352)
T ss_pred HhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999887789999999999999874
No 37
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=63.59 E-value=3.1 Score=32.88 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=30.9
Q ss_pred hccCCCCCCchHHHHHHHHHHhc-CCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSS-NVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG-~IPgPIifG~~iD~ 50 (100)
....|+++|+.+.|+....+.+| ..-||.++|.+.|.
T Consensus 371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~ 408 (438)
T TIGR00712 371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 408 (438)
T ss_pred HHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence 45678899999999998866555 57899999999994
No 38
>PRK03545 putative arabinose transporter; Provisional
Probab=62.96 E-value=4.2 Score=31.30 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=29.0
Q ss_pred cCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 16 GLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 16 ~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
...+|.|+.+.|+.+.++-+|..-||++.|.+.|.
T Consensus 321 ~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~ 355 (390)
T PRK03545 321 KLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLH 355 (390)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567889999988887778888899999999865
No 39
>TIGR00901 2A0125 AmpG-related permease.
Probab=61.52 E-value=4 Score=30.77 Aligned_cols=38 Identities=3% Similarity=-0.237 Sum_probs=28.8
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.-+.+|+|+|+.+.|++.+.-.+|.+-+|.+.+.+++.
T Consensus 108 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~ 145 (356)
T TIGR00901 108 RLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP 145 (356)
T ss_pred HHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34678999999999999875556777777777666543
No 40
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=61.37 E-value=2.4 Score=31.16 Aligned_cols=37 Identities=8% Similarity=-0.062 Sum_probs=31.0
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+.+|+++|+.+.|+......+|.+-||++.|.+.|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 154 (365)
T TIGR00900 118 PDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT 154 (365)
T ss_pred HhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999987778888899888887763
No 41
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=61.24 E-value=7.2 Score=30.00 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=32.6
Q ss_pred HhhccCCC-CCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 12 NSYCGLDH-KLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 12 ~~lR~V~~-~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
...|..++ ++++-+.|+...+--+|.+-||++.|.+.|.
T Consensus 327 ~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~ 366 (390)
T TIGR02718 327 AFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR 366 (390)
T ss_pred HHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566665 8889999999887788999999999999995
No 42
>PRK03893 putative sialic acid transporter; Provisional
Probab=61.14 E-value=2.2 Score=33.73 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=31.6
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..+|+++|+.+.|++.....+|+.-||++.|.+.|.
T Consensus 393 ~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 393 GYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred hhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 567889999999999986678889999999999984
No 43
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=60.92 E-value=3.6 Score=31.09 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=30.2
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
.+..++++++.+.|+...+..+|..-||.+.|.++|.+
T Consensus 312 ~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 312 LRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666777888888877666677888999999999964
No 44
>PRK15075 citrate-proton symporter; Provisional
Probab=60.79 E-value=5.3 Score=31.46 Aligned_cols=38 Identities=3% Similarity=-0.126 Sum_probs=30.8
Q ss_pred hccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhccc
Q psy11787 14 YCGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~s 51 (100)
-..+|+++|+.+.|+... .+.+++.-+|.+.|.++|..
T Consensus 357 ~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 357 TEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred HHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 467899999999999654 66665666999999999974
No 45
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=60.76 E-value=4.4 Score=31.66 Aligned_cols=39 Identities=5% Similarity=-0.091 Sum_probs=33.4
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
..+.+|+++|+.+.|+......+|.+-||++.|.+.|..
T Consensus 115 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 153 (485)
T TIGR00711 115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY 153 (485)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence 346789999999999988877788999999999998863
No 46
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=58.84 E-value=4 Score=31.27 Aligned_cols=38 Identities=18% Similarity=0.022 Sum_probs=31.9
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..+.+|+|+|+.+.|+.....-+|..-+|.+.|.+.|.
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 327 AVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW 364 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999998886667777888899999884
No 47
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=57.62 E-value=6.2 Score=30.00 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=32.2
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+.++++.++.+.|+....+.+|..-||.+.|.+.|.
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~ 373 (408)
T PRK09874 337 VYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN 373 (408)
T ss_pred HHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh
Confidence 4567889999999999988889999999999999874
No 48
>PRK10054 putative transporter; Provisional
Probab=54.48 E-value=6.6 Score=30.75 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=29.1
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
+.+|++.|+.+.|+++. ..+|..-||++.|.+.|+
T Consensus 325 ~~~p~~~~~~~~~~~~~-~~~G~~~Gp~~~G~l~~~ 359 (395)
T PRK10054 325 HIAPPGMKASYFSAQSL-GWLGAAINPLVSGVILTT 359 (395)
T ss_pred HhCCcccceehHhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 55788999999887763 447999999999999994
No 49
>PRK09952 shikimate transporter; Provisional
Probab=54.28 E-value=7.1 Score=31.00 Aligned_cols=37 Identities=11% Similarity=-0.043 Sum_probs=31.4
Q ss_pred ccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhccc
Q psy11787 15 CGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~s 51 (100)
..+|.+.|+.+.|+... .+.+|+.-+|.+.|.++|.+
T Consensus 370 e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~ 407 (438)
T PRK09952 370 EMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF 407 (438)
T ss_pred HHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66899999999999776 56788889999999999753
No 50
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=53.57 E-value=16 Score=30.78 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=18.1
Q ss_pred CccceeeccchhHHHHHHHHHH--HHHHHHHHHHH
Q psy11787 61 EKGACNLYDTDVFRVFYHEKCV--LSIELELYWTP 93 (100)
Q Consensus 61 ~~G~C~~Yd~~~l~~~~~~l~~--~~k~~s~l~~~ 93 (100)
...+||+| ||+.|+..+. .+.++++++|.
T Consensus 17 ~~kgC~YY----lryfFlF~SLIQ~LIIlgLVLFm 47 (442)
T PF06637_consen 17 KGKGCWYY----LRYFFLFVSLIQFLIILGLVLFM 47 (442)
T ss_pred CCCChhHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44679999 6776665554 35555655554
No 51
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=53.21 E-value=6.9 Score=29.76 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=31.4
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+.+|+++|+.++|+..+...+|.+-||.+.|.++|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 168 (408)
T PRK09874 132 ATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS 168 (408)
T ss_pred HHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999998886678889999999988874
No 52
>PRK10504 putative transporter; Provisional
Probab=52.50 E-value=8 Score=30.48 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=34.0
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
..+|+++++.+.|+..+.+-+|..-||.+.|.+.|..
T Consensus 380 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 380 KDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999888899999999999998875
No 53
>PRK13751 putative mercuric transport protein; Provisional
Probab=51.76 E-value=28 Score=24.38 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=27.6
Q ss_pred cccCCccceeeccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy11787 57 SVCGEKGACNLYDTDVFRVFYHEKCVLSIELELYWTPV 94 (100)
Q Consensus 57 ~~Cg~~G~C~~Yd~~~l~~~~~~l~~~~k~~s~l~~~l 94 (100)
++|.+...|-.+.+++..+.++-+...+-.+.+.+--+
T Consensus 74 ~~C~~g~~Ca~p~~rk~~k~~~Wi~~vlvl~~L~fPy~ 111 (116)
T PRK13751 74 AACKPGEVCAIPQVRATYKLIFWIVAALVLVALGFPYV 111 (116)
T ss_pred cccCCCCccCCcccchHHHHHHHHHHHHHHHHHHhHHH
Confidence 56988889999999988877777766665555444333
No 54
>PRK11663 regulatory protein UhpC; Provisional
Probab=51.39 E-value=5.9 Score=31.28 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=30.8
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+..|+++|+.++|+......+|++-+|.+.|.++|.
T Consensus 137 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 173 (434)
T PRK11663 137 TAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH 173 (434)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567889999999999987778888888888887764
No 55
>PRK03545 putative arabinose transporter; Provisional
Probab=49.62 E-value=7.3 Score=29.95 Aligned_cols=38 Identities=3% Similarity=-0.255 Sum_probs=30.1
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.-|-.|+|+|+.++|+....-.+|..-||.+.|.+.+.
T Consensus 122 i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~ 159 (390)
T PRK03545 122 AIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY 159 (390)
T ss_pred HHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35667899999999998876667788888888777663
No 56
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=49.43 E-value=9.7 Score=28.51 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=31.3
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..+.+|+++|+.+.|+..+...+|.+-||.+.+.+++.
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999887778888888888877764
No 57
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=48.65 E-value=5.9 Score=32.06 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 18 DHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 18 ~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
|+++|+.++|+......+|.+-||.+.|.++|.
T Consensus 125 ~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 125 EEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 678999999999987788999999999999886
No 58
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=48.60 E-value=6.9 Score=30.61 Aligned_cols=37 Identities=3% Similarity=-0.175 Sum_probs=30.6
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+-+|+++|+.++|+.+....+|.+-||++.|.+.|.
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~ 170 (394)
T PRK10213 134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL 170 (394)
T ss_pred HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4778999999999999986667888888888877764
No 59
>PRK12382 putative transporter; Provisional
Probab=48.54 E-value=10 Score=29.03 Aligned_cols=37 Identities=3% Similarity=-0.251 Sum_probs=27.9
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+.+|+|+|+.|+|...+...+|.+-||.+.|.+.+.
T Consensus 138 ~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 138 LGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999997765556666777777766654
No 60
>PRK10489 enterobactin exporter EntS; Provisional
Probab=47.14 E-value=8.4 Score=29.90 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=31.6
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+-+|+++|+.+.|+..+..-+|.+-||.+.|.++|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~ 172 (417)
T PRK10489 136 PALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA 172 (417)
T ss_pred hhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 3678889999999998877778888999999988875
No 61
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=46.36 E-value=9.3 Score=29.96 Aligned_cols=36 Identities=3% Similarity=-0.177 Sum_probs=31.1
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
.+.+|+|+|+.+.|+......+|.+-||.+.|.+.+
T Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~ 160 (400)
T PRK11646 125 IKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ 160 (400)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999998888888999998888774
No 62
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=46.28 E-value=9.8 Score=30.78 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=32.2
Q ss_pred hccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~ 50 (100)
=+.+|++.|+-++|+-.. .--+|..-|..+.|++.|+
T Consensus 327 ~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 327 DRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred HHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356899999999999887 5568999999999999986
No 63
>TIGR00895 2A0115 benzoate transport.
Probab=46.07 E-value=7.4 Score=28.90 Aligned_cols=36 Identities=6% Similarity=-0.080 Sum_probs=29.8
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
...|+++|+.+.|+......+|.+-||++.|.+.|.
T Consensus 132 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (398)
T TIGR00895 132 EYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV 167 (398)
T ss_pred HHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence 456889999999998877778888888888888774
No 64
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=45.77 E-value=7.8 Score=30.62 Aligned_cols=37 Identities=14% Similarity=-0.070 Sum_probs=31.7
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+-.|+++|+.+.|+......+|.+-+|++.|.++|.
T Consensus 157 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~ 193 (465)
T TIGR00894 157 VKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES 193 (465)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999886678888899999998886
No 65
>TIGR00898 2A0119 cation transport protein.
Probab=45.71 E-value=8.5 Score=30.61 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=29.0
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhh
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYG 45 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG 45 (100)
+-...|++.|+.++|+..+..-+|++-+|.+.|
T Consensus 435 ~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 435 TAELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred hcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 346789999999999999977789999999998
No 66
>TIGR00893 2A0114 d-galactonate transporter.
Probab=45.14 E-value=6.1 Score=28.93 Aligned_cols=38 Identities=3% Similarity=-0.122 Sum_probs=30.6
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.-+.+|+|+|+.+.|+......+|.+-||.+.|.+.|.
T Consensus 107 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 144 (399)
T TIGR00893 107 VASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH 144 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 34567889999999998887778888888888877664
No 67
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=44.18 E-value=12 Score=33.30 Aligned_cols=37 Identities=16% Similarity=-0.112 Sum_probs=32.0
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+-+++++++.|+|+..+...+|.+-||++.|.+++.
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~ 170 (1140)
T PRK06814 134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS 170 (1140)
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999987778999999999988774
No 68
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=43.90 E-value=8.5 Score=28.77 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=30.1
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+..|+++|+.+.|+......+|.+-||.+.|.+.|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 155 (385)
T TIGR00710 119 RDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW 155 (385)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557889999999999886677888888888887774
No 69
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=43.88 E-value=19 Score=28.58 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=33.0
Q ss_pred HHHhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 10 CLNSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 10 ~~~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-...+|.++++.++-+.++...+ .|+.-.|.+.|.+.|.
T Consensus 343 ~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 343 YGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 35678999999888888877765 9999999999999994
No 70
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=43.57 E-value=14 Score=29.84 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=28.2
Q ss_pred ccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhccc
Q psy11787 15 CGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~s 51 (100)
...|++.|+.++|+... .+.. +..+|.+.|.+.|..
T Consensus 369 ~~~p~~~Rg~~~g~~~~~~~~~-g~~~p~i~g~l~~~~ 405 (490)
T PRK10642 369 AMFPTHIRYSALAAAFNISVLV-AGLTPTLAAWLVEST 405 (490)
T ss_pred HHCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 35899999999998655 5444 577999999998754
No 71
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=42.79 E-value=13 Score=29.11 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=28.1
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
-|.+| ++++.+.+......-+|...||.+.|.+.|..
T Consensus 331 ~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~ 367 (394)
T PRK10213 331 TRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI 367 (394)
T ss_pred HHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566 55566667666666789999999999999954
No 72
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=42.49 E-value=48 Score=23.01 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=27.8
Q ss_pred cccCCccceeeccchhHHHHHHHHHHHHHHHHHHHHHhhhee
Q psy11787 57 SVCGEKGACNLYDTDVFRVFYHEKCVLSIELELYWTPVVITR 98 (100)
Q Consensus 57 ~~Cg~~G~C~~Yd~~~l~~~~~~l~~~~k~~s~l~~~l~~~~ 98 (100)
++|.+...|-..+.++..+.++.+..++-.+.+.+--++=+|
T Consensus 74 ~~c~~g~~C~~~~~~~~~~~~lwi~t~~vl~~l~~py~~p~f 115 (116)
T PF02411_consen 74 KACEPGSACARPQSRRQTKILLWIVTVLVLLLLAFPYYAPLF 115 (116)
T ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468877899988887777777777666655555444444333
No 73
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=42.41 E-value=11 Score=29.16 Aligned_cols=36 Identities=3% Similarity=-0.133 Sum_probs=30.3
Q ss_pred cCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhccc
Q psy11787 16 GLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 16 ~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~s 51 (100)
..|+++++.++|+... ..-+|.+-||++-|.+.|..
T Consensus 320 ~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~ 356 (382)
T TIGR00902 320 AQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL 356 (382)
T ss_pred hCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3489999999999765 55689999999999999875
No 74
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=41.99 E-value=13 Score=27.75 Aligned_cols=34 Identities=9% Similarity=-0.063 Sum_probs=28.0
Q ss_pred CCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 17 LDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 17 V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..+++++.+.|+.....-+|..-||.+.|.++|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~ 349 (375)
T TIGR00899 316 LMPGRAGAATTLYTNTGRVGWIIAGSVGGILAER 349 (375)
T ss_pred hCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777889988876668999999999999985
No 75
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=41.13 E-value=10 Score=28.51 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=29.2
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
+..|+|+|+.+.|+....-.+|.+-+|++.|.+.|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 141 (377)
T PRK11102 106 DMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW 141 (377)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999875567888888888887773
No 76
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=39.43 E-value=9.5 Score=29.71 Aligned_cols=33 Identities=6% Similarity=-0.100 Sum_probs=27.6
Q ss_pred CCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 18 DHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 18 ~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
|+++++.+.|+...+..++..-||+++|.+.|.
T Consensus 323 ~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~ 355 (393)
T PRK09705 323 QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSI 355 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888876677788899999999996
No 77
>PRK10504 putative transporter; Provisional
Probab=39.03 E-value=12 Score=29.46 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=31.6
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+.+|+++|+.+.|+......+|..-||.+.|.+.|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~ 160 (471)
T PRK10504 124 MKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY 160 (471)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 4667899999999999886678888999999999885
No 78
>PRK09528 lacY galactoside permease; Reviewed
Probab=38.75 E-value=9.5 Score=29.72 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=28.8
Q ss_pred ccCCCCCCchHHHH-HHHHHHhcCCcchhhhhhhhccc
Q psy11787 15 CGLDHKLNSPENGT-VSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 15 R~V~~~~rs~AlGv-~~~~rllG~IPgPIifG~~iD~s 51 (100)
+.+|++.++.+.++ ..+..-+|.+-||.+.|.+.|..
T Consensus 342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~ 379 (420)
T PRK09528 342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI 379 (420)
T ss_pred HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55788888877655 33467789999999999999964
No 79
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=38.12 E-value=49 Score=27.59 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=32.8
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcccc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSAC 52 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~sC 52 (100)
|-+|+++.+---|+..+..-.+++-||.++|.+.|.+-
T Consensus 407 ~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 407 RLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45799999988999888666778899999999999885
No 80
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=37.87 E-value=16 Score=28.43 Aligned_cols=37 Identities=8% Similarity=-0.126 Sum_probs=26.7
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcC-Ccchhhhhhhhc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSN-VPCPIVYGAVVD 49 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~-IPgPIifG~~iD 49 (100)
..+.+|+|+|+.++|+..+.--+|. +-||++.|.++|
T Consensus 130 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 130 VVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566899999999999887444553 456777666665
No 81
>PF12832 MFS_1_like: MFS_1 like family
Probab=37.82 E-value=20 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=23.2
Q ss_pred CCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 20 KLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 20 ~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
...+...|+...++-+-.+-+|.++|.+.|+.
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~ 62 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKF 62 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666777889999999974
No 82
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=37.08 E-value=18 Score=27.67 Aligned_cols=39 Identities=0% Similarity=-0.337 Sum_probs=28.9
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
..+-+|+|+|+.+.|+....-.+|.+-||.+.|.+++..
T Consensus 137 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 175 (399)
T PRK05122 137 GIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG 175 (399)
T ss_pred HHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 357789999999999877644566777777777776643
No 83
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=36.68 E-value=11 Score=29.58 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=30.5
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhh
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVV 48 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~i 48 (100)
.-...|+|.|+.+.|+.....-+|++-+|++.|.++
T Consensus 305 ~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 305 IGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 347899999999999999955567888899998888
No 84
>KOG3764|consensus
Probab=35.34 E-value=23 Score=30.21 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=27.5
Q ss_pred CCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 18 DHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 18 ~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
++++|+.++|+-...--+|.+-||.+.|.+-|.
T Consensus 190 ~d~er~~vmGialgfislG~lvgPpfGGilYe~ 222 (464)
T KOG3764|consen 190 EDNERGSVMGIALGFISLGVLVGPPFGGILYEF 222 (464)
T ss_pred cchhhhHHHHHHHHHHhccceecCCcccchHhh
Confidence 455679999999987779999999998887664
No 85
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=34.89 E-value=28 Score=29.85 Aligned_cols=35 Identities=6% Similarity=-0.183 Sum_probs=30.4
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
..+|+++|+.++|+......+|..-||++.|.+.+
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 45799999999999998888999999998888774
No 86
>PRK10054 putative transporter; Provisional
Probab=34.63 E-value=15 Score=28.77 Aligned_cols=36 Identities=11% Similarity=-0.079 Sum_probs=29.9
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
-+.+|+|+|+.+.|+......+|.+-||++.|.+.+
T Consensus 122 ~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 122 ADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999988667788889988888764
No 87
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=34.63 E-value=20 Score=27.81 Aligned_cols=37 Identities=5% Similarity=-0.240 Sum_probs=27.8
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+.+|+|+|+.+.|++.+---+|.+-||.+.+.++|.
T Consensus 120 ~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 120 TDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred HHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4568999999999999874445677777766666663
No 88
>KOG2927|consensus
Probab=34.35 E-value=45 Score=27.79 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=25.9
Q ss_pred CccceeeccchhHHHHHHHHHHHHHHHHHHHHH
Q psy11787 61 EKGACNLYDTDVFRVFYHEKCVLSIELELYWTP 93 (100)
Q Consensus 61 ~~G~C~~Yd~~~l~~~~~~l~~~~k~~s~l~~~ 93 (100)
+.--=|+||.+.+.+..+++.+.+-.+++++|-
T Consensus 176 de~YVW~yep~~~~~~vl~~~fvl~tlaivLFP 208 (372)
T KOG2927|consen 176 DEHYVWIYEPRPLMWQVLGVLFVLVTLAIVLFP 208 (372)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHHHhcc
Confidence 455689999999999988888877777766654
No 89
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=33.84 E-value=63 Score=24.94 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=22.7
Q ss_pred ceeeccchhHHHHHHHHHHHHHHHHHHHHH
Q psy11787 64 ACNLYDTDVFRVFYHEKCVLSIELELYWTP 93 (100)
Q Consensus 64 ~C~~Yd~~~l~~~~~~l~~~~k~~s~l~~~ 93 (100)
-=|+||...+-+++.++.+.+-++++++|-
T Consensus 100 YvW~ye~~~~~~~l~~~~~~~~v~a~~lFP 129 (224)
T PF03839_consen 100 YVWIYEPSPLMQYLIGALLLVGVIAICLFP 129 (224)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 479999999888888777776666666554
No 90
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=33.14 E-value=23 Score=31.26 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=31.8
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+.+++++|+.++|+..+...+|.+-||++.|.+++.
T Consensus 129 ~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 129 PELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999987778889999999888875
No 91
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=32.38 E-value=39 Score=26.64 Aligned_cols=35 Identities=3% Similarity=-0.225 Sum_probs=24.9
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhh
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVV 48 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~i 48 (100)
.+..|+++|+.+.|+..+...+|+.-+|.+.+..+
T Consensus 144 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~ 178 (438)
T TIGR00712 144 VHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM 178 (438)
T ss_pred HHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 35689999999999988755566666665554433
No 92
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=32.35 E-value=1.1e+02 Score=23.52 Aligned_cols=67 Identities=4% Similarity=0.002 Sum_probs=40.9
Q ss_pred CCCCchHHHHHHHHHHhcCCcchhhhhhhhcccccccccccCCccceeeccchhHHHHHHHHHHHHHHHHHHH
Q psy11787 19 HKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSACLVWESVCGEKGACNLYDTDVFRVFYHEKCVLSIELELYW 91 (100)
Q Consensus 19 ~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~sCl~W~~~Cg~~G~C~~Yd~~~l~~~~~~l~~~~k~~s~l~ 91 (100)
++.++.+.|+..+..-+|..-||.+.|.+.|.. =++.. +++.. +..+.++..+..+...+..+++++
T Consensus 349 ~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~--G~~~~-~~~~~---~~~~~~~~~~~~~p~i~~~~~~~~ 415 (437)
T TIGR00792 349 VRAEGLVYSVRTFVRKLGQALAGFLVGLILGII--GYVAN-AAQSP---ITLNGIKILMFAVPALFLLLAAII 415 (437)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcC-CcCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788899998877889999999999999974 12211 11110 111235555555565555555543
No 93
>PRK03893 putative sialic acid transporter; Provisional
Probab=31.66 E-value=15 Score=28.94 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=31.9
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..+..|+++|+.++|+......+|.+-+|.+.|.++|.
T Consensus 133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 170 (496)
T PRK03893 133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV 170 (496)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45778899999999999886678899999988888774
No 94
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=30.87 E-value=18 Score=27.68 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=27.5
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
+..|+++|+.+.|.....-.+|.+-+|++.|.+.|.
T Consensus 118 ~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~ 153 (392)
T PRK10473 118 DTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK 153 (392)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457889999999998875556677788887776654
No 95
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=30.22 E-value=21 Score=28.08 Aligned_cols=36 Identities=3% Similarity=-0.213 Sum_probs=27.0
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
-+-.|+++|+.++|+..+.--+|.+-+|++.+.+.+
T Consensus 104 ~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~ 139 (368)
T TIGR00903 104 ASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT 139 (368)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466889999999999987555666666666666654
No 96
>PRK11043 putative transporter; Provisional
Probab=29.98 E-value=33 Score=26.29 Aligned_cols=36 Identities=6% Similarity=0.033 Sum_probs=29.3
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+..| ++|+-+.|+...+...++.-+|.+.|.++|.
T Consensus 322 ~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 322 LRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred hhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 35554 6899999999987777888888899999883
No 97
>PF03692 CxxCxxCC: Putative zinc- or iron-chelating domain; InterPro: IPR005358 This family of proteins contain 8 conserved cysteines that may form a zinc binding site. The function of these proteins is unknown.
Probab=29.58 E-value=22 Score=21.81 Aligned_cols=21 Identities=24% Similarity=0.703 Sum_probs=15.5
Q ss_pred hcccccccccccCCccceeeccch
Q psy11787 48 VDSACLVWESVCGEKGACNLYDTD 71 (100)
Q Consensus 48 iD~sCl~W~~~Cg~~G~C~~Yd~~ 71 (100)
.+..|.+.+.+ .|.|.+|+.+
T Consensus 42 ~~~~C~fL~~~---~~~C~Iy~~R 62 (85)
T PF03692_consen 42 EDGPCPFLDED---NGRCSIYEVR 62 (85)
T ss_pred cCCCCcCcCCC---CCccCCcCcc
Confidence 67788888753 4588888876
No 98
>PRK03699 putative transporter; Provisional
Probab=28.52 E-value=30 Score=26.71 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=25.3
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
.+..|+++|+.++|+....-.+|++-+|.+.|.+++
T Consensus 121 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (394)
T PRK03699 121 THVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA 156 (394)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788899999988766444556666766666654
No 99
>PRK15011 sugar efflux transporter B; Provisional
Probab=28.45 E-value=54 Score=25.33 Aligned_cols=34 Identities=9% Similarity=-0.032 Sum_probs=27.5
Q ss_pred CCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 17 LDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 17 V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
..+++|+.+.|+.....-+|..-||.+.|.+.|.
T Consensus 333 ~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~ 366 (393)
T PRK15011 333 LMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEI 366 (393)
T ss_pred hCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346699999998775568999999999999874
No 100
>PF10530 Toxin_35: Toxin with inhibitor cystine knot ICK or Knottin scaffold; InterPro: IPR019553 Spider toxins of the CSTX family are ion channel toxins containing an inhibitor cystine knot (ICK) structural motif or Knottin scaffold. The four disulphide bonds present in the CSTX spider toxin family are arranged in the following pattern: 1-4, 2-5, 3-8 and 6-7. CSTX-1 is the most important component of Cupiennius salei (Wandering spider) venom in terms of relative abundance and toxicity and therefore is likely to contribute significantly to the overall toxicity of the whole venom. CSTX-1 blocked rat neuronal L-type, but no other types of HVA Cav channels []. Interestingly, the omega-toxins from Phoneutria nigriventer (Brazilian armed spider) venom (another South American species also belonging to the Ctenidae family) are included as they carry the same disulphide bond arrangement. suggested that CSTX-1 may interact with Cav channels. Calcium ion voltage channel heteromultimer containing an L-type pore-forming alpha1-subunit is the most probable candidate for the molecular target of CSTX-1 these toxins [].
Probab=27.90 E-value=39 Score=17.43 Aligned_cols=17 Identities=24% Similarity=0.737 Sum_probs=11.8
Q ss_pred cccccccc--CCccceeec
Q psy11787 52 CLVWESVC--GEKGACNLY 68 (100)
Q Consensus 52 Cl~W~~~C--g~~G~C~~Y 68 (100)
|+=|.++| ++.|-|+.|
T Consensus 1 CI~~~~sC~~dk~gCC~~~ 19 (23)
T PF10530_consen 1 CIGKRHSCTHDKHGCCFKW 19 (23)
T ss_pred CCccccccccCCCCceeee
Confidence 66788888 345777765
No 101
>PRK03633 putative MFS family transporter protein; Provisional
Probab=27.86 E-value=23 Score=27.21 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=28.2
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
.+.+|++++.-+.+......-+|..-||.+.|.++|..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~ 348 (381)
T PRK03633 311 CEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY 348 (381)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667766655555555556789999999999999964
No 102
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=27.41 E-value=40 Score=26.51 Aligned_cols=34 Identities=9% Similarity=-0.113 Sum_probs=26.3
Q ss_pred ccCCCCCCchHHHHHHH-HHHh-cCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSK-LLDS-SNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~-~rll-G~IPgPIifG~~iD~ 50 (100)
...|++.|+.+.|+... -+++ |.. .|.+.+ ++|+
T Consensus 363 e~fp~~~r~t~~g~~~~~g~~~~g~~-~p~~~~-~l~~ 398 (432)
T PRK10406 363 EMFPAQVRALGVGLSYAVANALFGGS-AEYVAL-SLKS 398 (432)
T ss_pred HHCCCCccchhhhHHHHHHHHHHHhH-HHHHHH-HHHH
Confidence 56899999999999997 5654 554 788888 5565
No 103
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=27.36 E-value=20 Score=26.21 Aligned_cols=31 Identities=6% Similarity=-0.072 Sum_probs=25.9
Q ss_pred HHhhccCCCCCCchHHHHHHHHHHhcCCcch
Q psy11787 11 LNSYCGLDHKLNSPENGTVSKLLDSSNVPCP 41 (100)
Q Consensus 11 ~~~lR~V~~~~rs~AlGv~~~~rllG~IPgP 41 (100)
....+.+|+|+++.+.|+..+..-+|++-||
T Consensus 322 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 322 SLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4556788999999999999998778877776
No 104
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=26.93 E-value=23 Score=19.39 Aligned_cols=22 Identities=27% Similarity=0.122 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhccCCCCCCchH
Q psy11787 4 QLFLKLCLNSYCGLDHKLNSPE 25 (100)
Q Consensus 4 ~~~~~~~~~~lR~V~~~~rs~A 25 (100)
++|+--++-++|.+++++|..+
T Consensus 5 ~~Fl~Sl~p~~k~L~~~~k~~~ 26 (37)
T PF02944_consen 5 ELFLLSLLPHMKRLPPKQKLKF 26 (37)
T ss_pred HHHHHHhHHHHHhCCHHHHHHH
Confidence 6789999999999999888653
No 105
>KOG2615|consensus
Probab=26.11 E-value=35 Score=29.12 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=30.5
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
--.+|++||+-++|+-..+..++-.-||.+.|.+..
T Consensus 378 ~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 378 HKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 357899999999999987777788889999988764
No 106
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=25.48 E-value=52 Score=25.27 Aligned_cols=38 Identities=8% Similarity=-0.068 Sum_probs=28.4
Q ss_pred hccCCCCCCchHHHHHHH-HHHhcCCcchhhhhhhhccc
Q psy11787 14 YCGLDHKLNSPENGTVSK-LLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~-~rllG~IPgPIifG~~iD~s 51 (100)
.+..++++++-+.|+... ....|..-||++.|.+.|..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 318 IAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred HHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777654 45677788999999999976
No 107
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=24.91 E-value=39 Score=28.55 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=27.0
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
..||+||-+-|+++.++..-++.+-||.+.|.++.
T Consensus 130 ~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 130 ELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred HhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46999999999999997555666777877776654
No 108
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=24.54 E-value=67 Score=26.64 Aligned_cols=41 Identities=12% Similarity=-0.040 Sum_probs=31.2
Q ss_pred HHHhhccCCCCCCchHHHHHHH---HHHhcCCcchhhhhhhhcc
Q psy11787 10 CLNSYCGLDHKLNSPENGTVSK---LLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 10 ~~~~lR~V~~~~rs~AlGv~~~---~rllG~IPgPIifG~~iD~ 50 (100)
..+..|-||+|+|+-|+|+..+ +-..-++|---+.|-.+..
T Consensus 123 ~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 123 AALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 4567899999999999999996 4456677766666666554
No 109
>PRK12307 putative sialic acid transporter; Provisional
Probab=24.29 E-value=34 Score=26.31 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=26.9
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
.+..|+++|+.+.|+....-.+|.+-+|.+.+.+.|
T Consensus 132 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 132 VESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred HHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 456788999999999887555677777776666555
No 110
>PRK10091 MFS transport protein AraJ; Provisional
Probab=22.88 E-value=49 Score=25.39 Aligned_cols=34 Identities=3% Similarity=-0.140 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 18 DHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 18 ~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
.++.|..+.+.......+|..-||.+.|.++|.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~ 351 (382)
T PRK10091 318 AKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLG 351 (382)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHcc
No 111
>PRK11010 ampG muropeptide transporter; Validated
Probab=22.13 E-value=44 Score=27.29 Aligned_cols=35 Identities=6% Similarity=-0.240 Sum_probs=28.0
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
+-+|+|+|+.+.|+......+|.+-||.+.+.+.|
T Consensus 134 ~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~ 168 (491)
T PRK11010 134 DVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD 168 (491)
T ss_pred HhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55889999999999998555677777777777777
No 112
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=21.97 E-value=46 Score=26.05 Aligned_cols=36 Identities=3% Similarity=-0.164 Sum_probs=28.0
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
-...|+++|+.+.|+.....-+|.+-+|.+++.+.|
T Consensus 390 ~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~ 425 (479)
T PRK10077 390 SEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK 425 (479)
T ss_pred HhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 345688999999999998777778877777765553
No 113
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=21.84 E-value=36 Score=25.97 Aligned_cols=36 Identities=3% Similarity=-0.098 Sum_probs=25.7
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
-+.+|+|+|+.++|+......+|..-+|++.+.+.+
T Consensus 129 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (406)
T PRK11551 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG 164 (406)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456789999999999887555666666666554443
No 114
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=21.62 E-value=40 Score=25.82 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=28.3
Q ss_pred CCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 18 DHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 18 ~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
++|.++..+++.....-+|++-||++.+.++.+
T Consensus 40 ~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~ 72 (310)
T TIGR01272 40 PIETAASRLALTQAFNKLGTTVAPLFGGSLILS 72 (310)
T ss_pred CcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 667788888888887779999999999999953
No 115
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=21.49 E-value=1.7e+02 Score=19.80 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=8.0
Q ss_pred ccCCccceeeccc
Q psy11787 58 VCGEKGACNLYDT 70 (100)
Q Consensus 58 ~Cg~~G~C~~Yd~ 70 (100)
+|.+...|..||+
T Consensus 50 ~~~~~~~c~~~~~ 62 (166)
T PF00822_consen 50 SCTGSTQCDSYDS 62 (166)
T ss_pred CcCceecccccCc
Confidence 3444567887665
No 116
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=21.40 E-value=40 Score=26.60 Aligned_cols=34 Identities=6% Similarity=-0.019 Sum_probs=27.9
Q ss_pred CCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 18 DHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 18 ~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
.++..+.+.|+..+...+|++-+|.+.|.+.|..
T Consensus 390 ~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~ 423 (465)
T TIGR00894 390 APRFLGFIKGITGLPGFIGGLIASTLAGNILSQD 423 (465)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC
Confidence 3457788888888877889999999999999863
No 117
>PRK03633 putative MFS family transporter protein; Provisional
Probab=21.25 E-value=39 Score=25.91 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=28.8
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
.+..++++|+.++|.......+|..-||.+.|.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 120 MCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4567888999999988776667888888888777663
No 118
>KOG2504|consensus
Probab=21.25 E-value=47 Score=28.00 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=35.1
Q ss_pred HHhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 11 LNSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 11 ~~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
++....|+.|+=+-|.|++.+..-++.+.||-+.|.+.|.+
T Consensus 411 ~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t 451 (509)
T KOG2504|consen 411 VILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT 451 (509)
T ss_pred HHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence 46667788999999999999988889999999999887754
No 119
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=21.03 E-value=34 Score=26.89 Aligned_cols=37 Identities=8% Similarity=-0.022 Sum_probs=28.8
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
.-+-.|+++|+.++|+....--+|.+-||.+.|.+++
T Consensus 121 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 121 LTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566788999999999987555777888888777664
No 120
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=20.52 E-value=23 Score=17.91 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=8.5
Q ss_pred CCcchhhhhhhh
Q psy11787 37 NVPCPIVYGAVV 48 (100)
Q Consensus 37 ~IPgPIifG~~i 48 (100)
.|-+||+.|.++
T Consensus 3 ~iIaPi~VGvvl 14 (21)
T PF13955_consen 3 TIIAPIVVGVVL 14 (21)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehhhHHHHHHH
Confidence 456888888754
No 121
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=20.49 E-value=34 Score=29.10 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=15.4
Q ss_pred hcCCcchhhhhhhhccc
Q psy11787 35 SSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 35 lG~IPgPIifG~~iD~s 51 (100)
.|++||+++.|++.|.-
T Consensus 299 ~agl~G~Ll~GwlSDkl 315 (448)
T COG2271 299 VAGLPGTLLAGWLSDKL 315 (448)
T ss_pred HHhhHHHHHHHHHHHHh
Confidence 68999999999999963
Done!