Query psy11787
Match_columns 100
No_of_seqs 122 out of 436
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:56:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 83.3 0.34 1.2E-05 35.7 0.9 39 12-50 370-409 (451)
2 2xut_A Proton/peptide symporte 72.1 0.78 2.7E-05 34.9 0.0 39 13-51 430-468 (524)
3 4aps_A DI-OR tripeptide H+ sym 66.7 2.2 7.6E-05 32.0 1.5 38 12-49 410-447 (491)
4 1pw4_A Glycerol-3-phosphate tr 62.9 2.4 8.4E-05 31.0 1.1 37 13-49 144-180 (451)
5 2gfp_A EMRD, multidrug resista 61.3 1.7 5.7E-05 31.4 -0.1 36 15-50 115-150 (375)
6 3o7q_A L-fucose-proton symport 54.6 4 0.00014 29.8 1.0 36 13-48 142-177 (438)
7 2gfp_A EMRD, multidrug resista 51.8 1.7 5.8E-05 31.4 -1.4 35 15-50 318-352 (375)
8 4aps_A DI-OR tripeptide H+ sym 42.6 7.4 0.00025 29.0 0.9 37 14-50 134-172 (491)
9 2xut_A Proton/peptide symporte 37.9 12 0.00042 28.2 1.4 38 13-50 134-174 (524)
10 1nov_D Nodamura virus coat pro 33.6 18 0.00062 20.5 1.3 11 32-42 15-25 (44)
11 3o7q_A L-fucose-proton symport 32.6 7.1 0.00024 28.4 -0.7 36 14-51 373-408 (438)
12 2z2q_B Coat protein gamma; wil 32.0 20 0.00067 20.4 1.3 11 32-42 15-25 (44)
13 2cfq_A Lactose permease; trans 31.9 3.4 0.00012 30.8 -2.5 36 15-50 339-375 (417)
14 1f8v_D Mature capsid protein g 28.5 12 0.00041 20.9 0.0 9 34-42 17-25 (40)
15 3sum_A Cerato-platanin-like pr 20.9 25 0.00085 24.4 0.4 25 34-67 40-65 (136)
16 2kv5_A FST, putative uncharact 20.1 15 0.00051 19.8 -0.7 14 35-48 5-18 (33)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=83.31 E-value=0.34 Score=35.68 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=34.6
Q ss_pred HhhccCCCCCCchHHHHHHHHHHh-cCCcchhhhhhhhcc
Q psy11787 12 NSYCGLDHKLNSPENGTVSKLLDS-SNVPCPIVYGAVVDS 50 (100)
Q Consensus 12 ~~lR~V~~~~rs~AlGv~~~~rll-G~IPgPIifG~~iD~ 50 (100)
...+.+|+++|+.+.|+..+...+ |..-+|.+.|.+.|.
T Consensus 370 ~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 370 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999997666 999999999999995
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=72.06 E-value=0.78 Score=34.88 Aligned_cols=39 Identities=8% Similarity=0.006 Sum_probs=35.1
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
..+.+|+++|+.+.|+..+..-+|++-||.+.|.+.|.+
T Consensus 430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~ 468 (524)
T 2xut_A 430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT 468 (524)
T ss_dssp HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH
T ss_pred HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456789999999999999988899999999999999864
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=66.69 E-value=2.2 Score=31.96 Aligned_cols=38 Identities=5% Similarity=-0.258 Sum_probs=33.3
Q ss_pred HhhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 12 NSYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 12 ~~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
...+.+|++.|+.+.|+..+.+.+|..-||.+.|.+.|
T Consensus 410 ~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 410 VTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45577899999999999998888999999999998865
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=62.93 E-value=2.4 Score=30.99 Aligned_cols=37 Identities=5% Similarity=-0.147 Sum_probs=31.5
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhc
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVD 49 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD 49 (100)
.-+.+|+++|+.++|+......+|.+-||++.|.+++
T Consensus 144 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 144 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999988778899999999988765
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=61.30 E-value=1.7 Score=31.41 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=30.8
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
+..|+++|+.+.|+......+|.+-||.+.|.+.|.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 115 DLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 456889999999999987778999999999888774
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=54.56 E-value=4 Score=29.79 Aligned_cols=36 Identities=0% Similarity=-0.187 Sum_probs=32.0
Q ss_pred hhccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhh
Q psy11787 13 SYCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVV 48 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~i 48 (100)
.-+..|+|+|+.++|+.....-+|.+-||++.|.++
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 142 VTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346679999999999999888899999999999988
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=51.83 E-value=1.7 Score=31.38 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=30.1
Q ss_pred ccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
+.+| |+|+.+.|+....+.+|...+|.+.|.+.|.
T Consensus 318 ~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 318 EPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp THHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456 7899999999998889999999999998664
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=42.57 E-value=7.4 Score=29.03 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=28.9
Q ss_pred hccCCCCC--CchHHHHHHHHHHhcCCcchhhhhhhhcc
Q psy11787 14 YCGLDHKL--NSPENGTVSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 14 lR~V~~~~--rs~AlGv~~~~rllG~IPgPIifG~~iD~ 50 (100)
-+.+|+++ |+.+.|+......+|.+-||.+.|.+.|.
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888 66677766677778999999999998874
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=37.86 E-value=12 Score=28.16 Aligned_cols=38 Identities=5% Similarity=-0.046 Sum_probs=29.8
Q ss_pred hhccCCCCCCchHHHH---HHHHHHhcCCcchhhhhhhhcc
Q psy11787 13 SYCGLDHKLNSPENGT---VSKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 13 ~lR~V~~~~rs~AlGv---~~~~rllG~IPgPIifG~~iD~ 50 (100)
.-+.+|+++|+.+.+. ......+|.+-||++.|.+.|.
T Consensus 134 ~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 134 MGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4467899999887777 5556678888999999988874
No 10
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=33.64 E-value=18 Score=20.54 Aligned_cols=11 Identities=36% Similarity=0.597 Sum_probs=8.6
Q ss_pred HHHhcCCcchh
Q psy11787 32 LLDSSNVPCPI 42 (100)
Q Consensus 32 ~rllG~IPgPI 42 (100)
+..+.+||||+
T Consensus 15 l~~aS~iPGPV 25 (44)
T 1nov_D 15 LNFASTIPGPV 25 (44)
T ss_pred HHHHhcCCCch
Confidence 34578999997
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=32.57 E-value=7.1 Score=28.43 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=28.8
Q ss_pred hccCCCCCCchHHHHHHHHHHhcCCcchhhhhhhhccc
Q psy11787 14 YCGLDHKLNSPENGTVSKLLDSSNVPCPIVYGAVVDSA 51 (100)
Q Consensus 14 lR~V~~~~rs~AlGv~~~~rllG~IPgPIifG~~iD~s 51 (100)
.+.+|++ ++.+.|+.. +..+|+.-+|.++|.+.|..
T Consensus 373 ~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 373 IKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred Hhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 5667765 888888766 45589999999999999975
No 12
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=31.98 E-value=20 Score=20.39 Aligned_cols=11 Identities=55% Similarity=0.906 Sum_probs=8.6
Q ss_pred HHHhcCCcchh
Q psy11787 32 LLDSSNVPCPI 42 (100)
Q Consensus 32 ~rllG~IPgPI 42 (100)
+..+..||||+
T Consensus 15 l~a~S~iPGPV 25 (44)
T 2z2q_B 15 LAAASNIPGPI 25 (44)
T ss_pred HHHHhcCCCch
Confidence 44578999997
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=31.93 E-value=3.4 Score=30.82 Aligned_cols=36 Identities=6% Similarity=0.074 Sum_probs=29.6
Q ss_pred ccCCCCCCchHHHHH-HHHHHhcCCcchhhhhhhhcc
Q psy11787 15 CGLDHKLNSPENGTV-SKLLDSSNVPCPIVYGAVVDS 50 (100)
Q Consensus 15 R~V~~~~rs~AlGv~-~~~rllG~IPgPIifG~~iD~ 50 (100)
+..|++.|+-+.|+. ...+-+|++-||++.|.+.|.
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 456888899998885 456678899999999999885
No 14
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=28.51 E-value=12 Score=20.90 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=0.4
Q ss_pred HhcCCcchh
Q psy11787 34 DSSNVPCPI 42 (100)
Q Consensus 34 llG~IPgPI 42 (100)
.+.+||||+
T Consensus 17 ~aS~iPGPV 25 (40)
T 1f8v_D 17 TLSVIPGPV 25 (40)
T ss_dssp C--------
T ss_pred HHhcCCCch
Confidence 367899997
No 15
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}
Probab=20.92 E-value=25 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=16.2
Q ss_pred HhcCCcchhhhhhhhccccccccc-ccCCccceee
Q psy11787 34 DSSNVPCPIVYGAVVDSACLVWES-VCGEKGACNL 67 (100)
Q Consensus 34 llG~IPgPIifG~~iD~sCl~W~~-~Cg~~G~C~~ 67 (100)
.+|.+|+=..+|+.. |++ +|| .||-
T Consensus 40 t~g~lp~FP~igg~~------wns~~CG---tCwk 65 (136)
T 3sum_A 40 KLGEVLNFPHFVAAP------EAQTECG---SCWK 65 (136)
T ss_dssp BGGGSTTTTSEEECC------BTTBCTT---CEEE
T ss_pred cccccCCCCcccccc------cCCCCCC---ceEE
Confidence 578899833444433 985 685 8884
No 16
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=20.06 E-value=15 Score=19.75 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=10.7
Q ss_pred hcCCcchhhhhhhh
Q psy11787 35 SSNVPCPIVYGAVV 48 (100)
Q Consensus 35 lG~IPgPIifG~~i 48 (100)
+-.|-|||+.|.++
T Consensus 5 ~~~IIaPivVGvvl 18 (33)
T 2kv5_A 5 MSLVIAPIFVGLVL 18 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44677999999875
Done!