RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11787
(100 letters)
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 60.4 bits (147), Expect = 3e-12
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 37 NVPCPIVYGAVVDSACLVWESVC-GEKGACNLYDTDVFR 74
+P PI++GA++DS CL W + C G++GAC LYD D R
Sbjct: 544 FIPAPIIFGALIDSTCLKWGTSCCGKRGACRLYDNDSLR 582
>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter. The
Organo Anion Transporter (OAT) Family (TC
2.A.60)Proteins of the OAT family catalyze the
Na+-independent facilitated transport of organic anions
such as bromosulfobromophthalein and prostaglandins as
well as conjugated and unconjugated bile acids
(taurocholate and cholate, respectively). These
transporters have been characterized in mammals, but
homologues are present in C. elegans and A. thaliana.
Some of the mammalian proteins exhibit a high degree of
tissue specificity. For example, the rat OAT is found at
high levels in liver and kidney and at lower levels in
other tissues. These proteins possess 10-12 putative
a-helical transmembrane spanners. They may catalyze
electrogenic anion uniport or anion exchange.
Length = 633
Score = 54.0 bits (130), Expect = 7e-10
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 38 VPCPIVYGAVVDSACLVWESVC-GEKGACNLYDTDVFRVFYH 78
+P PI++G ++D +CL W+++C G +GAC +YD D R Y
Sbjct: 569 IPAPILFGLLIDVSCLHWQTLCCGARGACRMYDNDNLRNIYL 610
>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of
the FGGY family of carbohydrate kinases. This subgroup
is predominantly composed of bacterial D-xylulose
kinases (XK, also known as xylulokinase; EC 2.7.1.17).
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. EcXK exists as a dimer. Each monomer consists
of two large domains separated by an open cleft that
forms an active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 490
Score = 28.5 bits (64), Expect = 0.49
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 13 SYCGLDHKLNSPENGTVSKL 32
+C L H LNSP N T SKL
Sbjct: 121 DFC-LSHLLNSPGNFTASKL 139
>gnl|CDD|145649 pfam02610, Arabinose_Isome, L-arabinose isomerase. This is a
family of L-arabinose isomerases, AraA, EC:5.3.1.4.
These enzymes catalyze the reaction: L-arabinose <=>
L-ribulose. This reaction is the first step in the
pathway of L-arabinose utilisation as a carbon source
after entering the cell L-arabinose is converted into
L-ribulose by the L-arabinose isomerases enzyme.
Length = 359
Score = 25.7 bits (57), Expect = 4.8
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 29 VSKLLDSSNVPCPIVYGAVVDSA 51
V L S +P IV VV +
Sbjct: 35 VEGLNASGKLPVKIVLKPVVTTP 57
>gnl|CDD|215232 PLN02422, PLN02422, dephospho-CoA kinase.
Length = 232
Score = 25.5 bits (56), Expect = 5.0
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 28 TVSKLLDSSNVP---CPIVYGAVVDSACLVWESV 58
TVS L SS +P V V+ W+ V
Sbjct: 16 TVSNLFKSSGIPVVDADKVARDVLKKGSGGWKRV 49
>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase.
Length = 340
Score = 25.5 bits (56), Expect = 6.2
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 49 DSACLVWESVCGEKGACNLYDTDVFRVFYHEKCVLSIELELYWTPV 94
D + VWE V GE YD R + + + IE L W V
Sbjct: 66 DESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGV 111
>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1). This group
represents Arabidoposis protein AIG1 (avrRpt2-induced
gene 1) that appears to be involved in plant resistance
to bacteria. The Arabidopsis disease resistance gene
RPS2 is involved in recognition of bacterial pathogens
carrying the avirulence gene avrRpt2. AIG1 exhibits
RPS2- and avrRpt1-dependent induction early after
infection with Pseudomonas syringae carrying avrRpt2.
This subfamily also includes IAN-4 protein, which has
GTP-binding activity and shares sequence homology with a
novel family of putative GTP-binding proteins: the
immuno-associated nucleotide (IAN) family. The
evolutionary conservation of the IAN family provides a
unique example of a plant pathogen response gene
conserved in animals. The IAN/IMAP subfamily has been
proposed to regulate apoptosis in vertebrates and
angiosperm plants, particularly in relation to cancer,
diabetes, and infections. The human IAN genes were
renamed GIMAP (GTPase of the immunity associated
proteins).
Length = 201
Score = 24.8 bits (55), Expect = 7.4
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 3 LQLFLKLCLNSYCGLDHKLNSPENGT-VSKLLD 34
L+ L+ C Y ++K E V +LL
Sbjct: 145 LKRLLEKCGGRYVAFNNKAKGREQEQQVKELLA 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.456
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,763,865
Number of extensions: 360366
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 9
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)