RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11787
         (100 letters)



>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
           polymerase, translation, transferase-RNA complex; HET:
           GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
           3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
           1efu_B
          Length = 1289

 Score = 27.2 bits (60), Expect = 0.88
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 48  VDSACLVWESVCGEKGACNLYDTDVFRVFYHEKCVLSI 85
           +D+  + WE     +  C L +  ++R  Y E    S+
Sbjct: 780 IDTEAVAWEKFLAAEAECALTNARLYRPDYSEDFNFSL 817


>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
           consortium, SGC, immune system; HET: GDP; 2.21A {Homo
           sapiens} PDB: 3v70_A*
          Length = 247

 Score = 27.0 bits (59), Expect = 0.96
 Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 2   YLQLFLKLCLNSYCGLDHKLNSPENGT-VSKLLD 34
            L+  +  C    C  D++    E    V +LL 
Sbjct: 167 ALRELVAECGGRVCAFDNRATGREQEAQVEQLLG 200


>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
           1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
          Length = 260

 Score = 26.9 bits (59), Expect = 0.97
 Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)

Query: 2   YLQLFLKLCLNSYCGLDHKLNSPENGT-VSKLLD 34
            L   +  C    C  +++         V +L+D
Sbjct: 167 ALSKLVAACGGRICAFNNRAEGSNQDDQVKELMD 200


>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
           hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
           d.16.1.6 PDB: 1lv0_A* 1gnd_A
          Length = 433

 Score = 25.6 bits (55), Expect = 4.0
 Identities = 4/38 (10%), Positives = 16/38 (42%)

Query: 25  ENGTVSKLLDSSNVPCPIVYGAVVDSACLVWESVCGEK 62
           ++G+ S++  S +      +    +    +++ + G  
Sbjct: 393 DDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSA 430


>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166,
           structural genomics, JC protein structure initiative;
           2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
          Length = 442

 Score = 24.8 bits (55), Expect = 6.0
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 40  CPIVYGAVVDSACLVWESVCGEKGA 64
            P+V G     A  V E V  +K +
Sbjct: 205 VPLVTGERKREALKVMEDVARKKSS 229


>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
           ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
           SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
           2gc5_A* 2gc6_A* 2gcb_A
          Length = 428

 Score = 24.8 bits (55), Expect = 6.4
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 40  CPIVYGAVVDSACLVWESVCGEKGA 64
            P+V G +V  A  V  +     G+
Sbjct: 193 IPVVTGNLVPDAAAVVAAKVATTGS 217


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,490,908
Number of extensions: 69760
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 7
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)