BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11790
         (110 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
           Complex With Antagonist Raloxifene
 pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
           Complex With Pure Antioestrogen Ici164,384
          Length = 255

 Score = 28.5 bits (62), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 47  ISSNSSWLIIGTLVVYLAFVLHIGPKYMKDRKPMNIKYIILAYNLFQTVYNAWI 100
           ISS    + +  L++ L+ V HI  K M+    M  K ++  Y+L   + NA +
Sbjct: 192 ISSQQQSVRLANLLMLLSHVRHISNKGMEHLLSMKCKNVVPVYDLLLEMLNAHL 245


>pdb|2J7X|A Chain A, Structure Of Estradiol-bound Estrogen Receptor Beta Lbd In
           Complex With Lxxll Motif From Ncoa5
 pdb|2J7Y|A Chain A, Structure Of 17-Epiestriol-Bound Estrogen Receptor Beta
           Lbd In Complex With Lxxll Motif From Ncoa5
          Length = 255

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 47  ISSNSSWLIIGTLVVYLAFVLHIGPKYMKDRKPMNIKYIILAYNLFQTVYNA 98
           ISS    + +  L++ L+ V HI  K M+    M  K ++  Y+L   + NA
Sbjct: 192 ISSQQQSVRLANLLMLLSHVRHISNKGMEHLLSMKCKNVVPVYDLLLEMLNA 243


>pdb|3D1T|A Chain A, Crystal Structure Of Gcyh-Ib
 pdb|3D1T|B Chain B, Crystal Structure Of Gcyh-Ib
          Length = 257

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 21  PNFIRDNVQVVLNELVEDKEVDKWFLISSNSSWLIIGTLVVYLAF 65
           P F+ D V+ V   L+ DK +  + + S N   +   +   Y+A+
Sbjct: 212 PKFVEDXVRDVATSLIADKRIKSFVVESENFESIHNHSAYAYIAY 256


>pdb|3D2O|A Chain A, Crystal Structure Of Manganese-Metallated Gtp
           Cyclohydrolase Type Ib
 pdb|3D2O|B Chain B, Crystal Structure Of Manganese-Metallated Gtp
           Cyclohydrolase Type Ib
          Length = 257

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 21  PNFIRDNVQVVLNELVEDKEVDKWFLISSNSSWLIIGTLVVYLAF 65
           P F+ D V+ V   L+ DK +  + + S N   +   +   Y+A+
Sbjct: 212 PKFVEDMVRDVATSLIADKRIKSFVVESENFESIHNHSAYAYIAY 256


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,174,274
Number of Sequences: 62578
Number of extensions: 110457
Number of successful extensions: 296
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 9
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)