Query psy11790
Match_columns 110
No_of_seqs 131 out of 754
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:03:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00251 fatty acid elongase; 99.6 1.1E-15 2.4E-20 121.0 4.8 66 36-105 12-82 (272)
2 PF01151 ELO: GNS1/SUR4 family 99.5 3.1E-14 6.8E-19 110.4 5.8 58 44-105 1-58 (250)
3 KOG3071|consensus 99.4 6.4E-13 1.4E-17 105.7 6.4 65 37-105 18-82 (274)
4 KOG3072|consensus 99.2 6.8E-12 1.5E-16 100.1 4.9 64 37-104 27-90 (282)
5 COG5548 Small integral membran 78.5 1.3 2.9E-05 30.8 1.5 26 55-81 57-82 (105)
6 PF11085 YqhR: Conserved membr 48.8 46 0.00099 25.3 4.8 21 89-109 131-151 (173)
7 MTH00169 ATP8 ATP synthase F0 38.6 25 0.00055 22.5 1.8 23 53-75 15-37 (67)
8 KOG3187|consensus 30.0 87 0.0019 24.7 3.9 28 81-108 8-35 (223)
9 PF10569 Thiol-ester_cl: Alpha 27.6 14 0.0003 20.3 -0.7 11 2-12 15-25 (31)
10 PF02326 YMF19: Plant ATP synt 24.4 63 0.0014 21.5 1.9 23 53-75 14-36 (86)
11 PRK09173 F0F1 ATP synthase sub 24.2 39 0.00085 24.1 1.0 25 55-79 8-36 (159)
12 PF06210 DUF1003: Protein of u 22.2 2.7E+02 0.006 19.2 5.3 32 71-103 21-52 (108)
No 1
>PTZ00251 fatty acid elongase; Provisional
Probab=99.59 E-value=1.1e-15 Score=120.96 Aligned_cols=66 Identities=26% Similarity=0.426 Sum_probs=60.9
Q ss_pred ccCccccccccccCCchhHHHHHHHHHHHhhhhccchhhcc----CCCcc-chhHHHHHHHHHHHHHHHHHHHHH
Q psy11790 36 VEDKEVDKWFLISSNSSWLIIGTLVVYLAFVLHIGPKYMKD----RKPMN-IKYIILAYNLFQTVYNAWIVSKDF 105 (110)
Q Consensus 36 ~~d~r~~~w~l~~s~~~~~~i~i~~~YL~~V~~~G~~~Mk~----RkP~~-Lk~~l~~yNl~~vv~S~~m~~~~~ 105 (110)
.+.+|+++| ++++|++ ++.++++|+++| +.||++||+ |||++ ||+++.+||++|+++|++++++.+
T Consensus 12 f~~~~~~~w-l~~~~~~--~~~i~~~Yl~~V-~~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~ 82 (272)
T PTZ00251 12 YDGHAVQKW-LASNVDI--CVYIAAAYLTFV-FKGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVV 82 (272)
T ss_pred CCcHHHHHH-HHhCCHH--HHHHHHHHHHHH-HHHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999 6899999 999999999999 599999974 99999 999999999999999999998875
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.50 E-value=3.1e-14 Score=110.37 Aligned_cols=58 Identities=41% Similarity=0.821 Sum_probs=55.2
Q ss_pred cccccCCchhHHHHHHHHHHHhhhhccchhhccCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy11790 44 WFLISSNSSWLIIGTLVVYLAFVLHIGPKYMKDRKPMNIKYIILAYNLFQTVYNAWIVSKDF 105 (110)
Q Consensus 44 w~l~~s~~~~~~i~i~~~YL~~V~~~G~~~Mk~RkP~~Lk~~l~~yNl~~vv~S~~m~~~~~ 105 (110)
|+ +++|++ ++.++++|+++| +.||++||+|||++||.++.+||++|+++|++++++.+
T Consensus 1 Wl-~~~~~~--~~~~~~~Yl~~V-~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~ 58 (250)
T PF01151_consen 1 WL-MSNPWF--PILIVVLYLLFV-FLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGIL 58 (250)
T ss_pred Cc-ccCCHH--HHHHHHHHHHHH-HHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 66 578888 999999999999 89999999999999999999999999999999999987
No 3
>KOG3071|consensus
Probab=99.39 E-value=6.4e-13 Score=105.73 Aligned_cols=65 Identities=37% Similarity=0.565 Sum_probs=57.6
Q ss_pred cCccccccccccCCchhHHHHHHHHHHHhhhhccchhhccCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy11790 37 EDKEVDKWFLISSNSSWLIIGTLVVYLAFVLHIGPKYMKDRKPMNIKYIILAYNLFQTVYNAWIVSKDF 105 (110)
Q Consensus 37 ~d~r~~~w~l~~s~~~~~~i~i~~~YL~~V~~~G~~~Mk~RkP~~Lk~~l~~yNl~~vv~S~~m~~~~~ 105 (110)
.|++++ ||+++++++ +..++.+|+ +|.+.||++|+||||++||+++++||++|+++|++++.+..
T Consensus 18 ~~~~v~-~~~l~s~~~--~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~ 82 (274)
T KOG3071|consen 18 PDDRVR-SPLLSSPWP--LLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGE 82 (274)
T ss_pred CCcccc-chhccCcHH--HHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455455 899999999 999999999 66699999999999999999999999999999999776654
No 4
>KOG3072|consensus
Probab=99.25 E-value=6.8e-12 Score=100.09 Aligned_cols=64 Identities=22% Similarity=0.422 Sum_probs=53.9
Q ss_pred cCccccccccccCCchhHHHHHHHHHHHhhhhccchhhccCCCccchhHHHHHHHHHHHHHHHHHHHH
Q psy11790 37 EDKEVDKWFLISSNSSWLIIGTLVVYLAFVLHIGPKYMKDRKPMNIKYIILAYNLFQTVYNAWIVSKD 104 (110)
Q Consensus 37 ~d~r~~~w~l~~s~~~~~~i~i~~~YL~~V~~~G~~~Mk~RkP~~Lk~~l~~yNl~~vv~S~~m~~~~ 104 (110)
.++++..|+ +..|+ +++.++++|+++| ++|+++|+|||||+|+++|.+||.++++||+.-+++.
T Consensus 27 ~~~~~~~~~--~~~~~-~si~is~~Y~v~i-f~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~ 90 (282)
T KOG3072|consen 27 DSESVVKFF--QEHWP-LSIHISIAYLVLI-FGGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRT 90 (282)
T ss_pred chHHHHHHH--Hhccc-hhHHHHHHHHHHH-HHHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 445566665 33344 4799999999999 8999999999999999999999999999998866554
No 5
>COG5548 Small integral membrane protein [Function unknown]
Probab=78.49 E-value=1.3 Score=30.80 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhhccchhhccCCCcc
Q psy11790 55 IIGTLVVYLAFVLHIGPKYMKDRKPMN 81 (110)
Q Consensus 55 ~i~i~~~YL~~V~~~G~~~Mk~RkP~~ 81 (110)
..+..+.=++++ ++++++||+|||.-
T Consensus 57 ~~A~~~s~~Ll~-~~~~R~~~sRKpvP 82 (105)
T COG5548 57 ILATVVSAALLV-FFALRLVRSRKPVP 82 (105)
T ss_pred ehHHHHHHHHHH-hcchhccccCCCcc
Confidence 344444445566 79999999999974
No 6
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=48.76 E-value=46 Score=25.31 Aligned_cols=21 Identities=24% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q psy11790 89 YNLFQTVYNAWIVSKDFKIYD 109 (110)
Q Consensus 89 yNl~~vv~S~~m~~~~~~~~~ 109 (110)
||.+.+-+|+|+.++.+..|.
T Consensus 131 ~nTiiT~~CiyiLyGlFIGYS 151 (173)
T PF11085_consen 131 WNTIITTLCIYILYGLFIGYS 151 (173)
T ss_pred hhHHHHHHHHHHHHHHHhcee
Confidence 799999999999999887763
No 7
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=38.61 E-value=25 Score=22.48 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhhhhccchhhc
Q psy11790 53 WLIIGTLVVYLAFVLHIGPKYMK 75 (110)
Q Consensus 53 ~~~i~i~~~YL~~V~~~G~~~Mk 75 (110)
|+.+...++|.+++.++.|++.+
T Consensus 15 Wl~i~f~~ly~l~s~~iLPri~~ 37 (67)
T MTH00169 15 WTLIILFFLFSLLVNYILPKIQQ 37 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999998888998754
No 8
>KOG3187|consensus
Probab=29.98 E-value=87 Score=24.67 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=21.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11790 81 NIKYIILAYNLFQTVYNAWIVSKDFKIY 108 (110)
Q Consensus 81 ~Lk~~l~~yNl~~vv~S~~m~~~~~~~~ 108 (110)
--+..+.+||+.+++..++..+.....|
T Consensus 8 ~~~~yL~~YNl~~fvgw~~~~l~~~~~~ 35 (223)
T KOG3187|consen 8 LKKSYLFLYNLVSFVGWIVLLLATVVLY 35 (223)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3467889999999999777777766555
No 9
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=27.57 E-value=14 Score=20.30 Aligned_cols=11 Identities=36% Similarity=0.380 Sum_probs=8.9
Q ss_pred cccchhhhccc
Q psy11790 2 QTISTEAATGF 12 (110)
Q Consensus 2 ~~~~~~~~~~~ 12 (110)
||||+++|+-+
T Consensus 15 Qtm~~~~P~v~ 25 (31)
T PF10569_consen 15 QTMSSFAPNVY 25 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhHHHH
Confidence 88999988754
No 10
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=24.43 E-value=63 Score=21.46 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhhhhccchhhc
Q psy11790 53 WLIIGTLVVYLAFVLHIGPKYMK 75 (110)
Q Consensus 53 ~~~i~i~~~YL~~V~~~G~~~Mk 75 (110)
|+.+.....|++++..+.|++-+
T Consensus 14 W~~i~f~~~y~~~~~~~lP~i~~ 36 (86)
T PF02326_consen 14 WLLIFFFFFYIFLVNFILPKISR 36 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55899999999999888887643
No 11
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=24.24 E-value=39 Score=24.10 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhccch----hhccCCC
Q psy11790 55 IIGTLVVYLAFVLHIGPK----YMKDRKP 79 (110)
Q Consensus 55 ~i~i~~~YL~~V~~~G~~----~Mk~RkP 79 (110)
.+.++++++++.++.+|+ +|+.|+-
T Consensus 8 ~i~f~i~l~~l~~~~~~~pi~~~l~~R~~ 36 (159)
T PRK09173 8 FVGLVLFLALVVYLKVPGMIARSLDARAD 36 (159)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777777777553543 4766653
No 12
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.18 E-value=2.7e+02 Score=19.18 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=19.9
Q ss_pred chhhccCCCccchhHHHHHHHHHHHHHHHHHHH
Q psy11790 71 PKYMKDRKPMNIKYIILAYNLFQTVYNAWIVSK 103 (110)
Q Consensus 71 ~~~Mk~RkP~~Lk~~l~~yNl~~vv~S~~m~~~ 103 (110)
..+.-.+++|+- ++..+-|+++++.+++.+--
T Consensus 21 N~~~~~~~~fDp-yPFilLnl~lS~~Aa~~ap~ 52 (108)
T PF06210_consen 21 NILAPPRPAFDP-YPFILLNLVLSLEAAYQAPL 52 (108)
T ss_pred HhhccccCCCCC-ccHHHHHHHHHHHHHHHHHH
Confidence 333333345553 24788899998888876543
Done!