Query psy11790
Match_columns 110
No_of_seqs 131 out of 754
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:03:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdm_A Sarcolipin; helix, memb 27.0 49 0.0017 17.5 2.2 21 89-109 10-30 (31)
2 3arc_L Photosystem II reaction 9.4 2.7E+02 0.0094 15.1 3.7 23 76-98 6-28 (37)
3 2f8e_A VPG protein; RNA-depend 9.2 81 0.0028 16.0 0.3 11 74-84 7-17 (26)
4 2lor_A Transmembrane protein 1 10.7 85 0.0029 21.2 0.0 25 68-97 46-70 (108)
5 2loo_A Transmembrane protein 1 10.1 91 0.0031 20.7 0.0 14 68-81 75-88 (108)
6 2l5q_A Uncharacterized protein 5.5 3.2E+02 0.011 19.1 2.0 33 59-94 90-123 (142)
7 4b0f_A C4B-binding protein alp 4.4 2.5E+02 0.0084 17.2 0.7 28 68-95 18-46 (65)
8 3cwx_A Protein CAGD, HP0525, C 4.2 2.3E+02 0.0077 19.8 0.4 14 86-99 135-148 (176)
9 3c19_A Uncharacterized protein 3.9 93 0.0032 22.7 -1.9 16 68-83 44-60 (186)
10 3kp9_A Vkorc1/thioredoxin doma 3.9 1.3E+03 0.043 17.2 6.2 50 56-105 74-123 (291)
No 1
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.05 E-value=49 Score=17.49 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q psy11790 89 YNLFQTVYNAWIVSKDFKIYD 109 (110)
Q Consensus 89 yNl~~vv~S~~m~~~~~~~~~ 109 (110)
-|+.+++.+..+.+-.+|+|.
T Consensus 10 ~NFt~vLI~vlLi~llVrsyq 30 (31)
T 1jdm_A 10 LNFTIVLITVILMWLLVRSYQ 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 477788888888887888774
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=9.44 E-value=2.7e+02 Score=15.15 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=17.8
Q ss_pred cCCCccchhHHHHHHHHHHHHHH
Q psy11790 76 DRKPMNIKYIILAYNLFQTVYNA 98 (110)
Q Consensus 76 ~RkP~~Lk~~l~~yNl~~vv~S~ 98 (110)
|++|.+|.+.-..|-+.++..-+
T Consensus 6 n~q~VELNRTSLy~GLLlifvla 28 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLILVLA 28 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHHHHH
Confidence 57889999999999887765433
No 3
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=9.18 E-value=81 Score=15.96 Aligned_cols=11 Identities=18% Similarity=0.703 Sum_probs=8.4
Q ss_pred hccCCCccchh
Q psy11790 74 MKDRKPMNIKY 84 (110)
Q Consensus 74 Mk~RkP~~Lk~ 84 (110)
|++.+|.++|.
T Consensus 7 lerq~plkvka 17 (26)
T 2f8e_A 7 LERQRPLKVKA 17 (26)
T ss_pred hhhcCcceeee
Confidence 78888887763
No 4
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=10.67 E-value=85 Score=21.16 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=19.3
Q ss_pred hccchhhccCCCccchhHHHHHHHHHHHHH
Q psy11790 68 HIGPKYMKDRKPMNIKYIILAYNLFQTVYN 97 (110)
Q Consensus 68 ~~G~~~Mk~RkP~~Lk~~l~~yNl~~vv~S 97 (110)
|+++++-++|=||-++ ||++.+++.
T Consensus 46 f~~Q~~vqrklpYp~q-----wniLVs~v~ 70 (108)
T 2lor_A 46 FGLQMFIQRKFPYPLQ-----WSLLVAVVA 70 (108)
Confidence 6789999999888877 677666543
No 5
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=10.15 E-value=91 Score=20.67 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=12.1
Q ss_pred hccchhhccCCCcc
Q psy11790 68 HIGPKYMKDRKPMN 81 (110)
Q Consensus 68 ~~G~~~Mk~RkP~~ 81 (110)
..++|+.|.||++-
T Consensus 75 ~m~~R~~~t~K~mP 88 (108)
T 2loo_A 75 IMGVRFKRSKKIMP 88 (108)
Confidence 58999999999864
No 6
>2l5q_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=5.48 E-value=3.2e+02 Score=19.12 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=26.1
Q ss_pred HHHHHHhhhhccchhhccC-CCccchhHHHHHHHHHH
Q psy11790 59 LVVYLAFVLHIGPKYMKDR-KPMNIKYIILAYNLFQT 94 (110)
Q Consensus 59 ~~~YL~~V~~~G~~~Mk~R-kP~~Lk~~l~~yNl~~v 94 (110)
.-.|+.= +.|.+=++| -|=++|++++-||+++.
T Consensus 90 L~~yf~e---VLP~yD~dRVy~SDIKKliqWYNiL~~ 123 (142)
T 2l5q_A 90 LHAYFAE---VLPNYDRDRVHNGDIKKLISWYNILVN 123 (142)
T ss_dssp HHHHHTT---TCTTCCSSSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH---hCCCCcccccchHHHHHHHHHHHHHHH
Confidence 3455544 479998888 67799999999999874
No 7
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=4.37 E-value=2.5e+02 Score=17.22 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=22.0
Q ss_pred hccchhhccC-CCccchhHHHHHHHHHHH
Q psy11790 68 HIGPKYMKDR-KPMNIKYIILAYNLFQTV 95 (110)
Q Consensus 68 ~~G~~~Mk~R-kP~~Lk~~l~~yNl~~vv 95 (110)
.-|.++|+-- .|.+.|..+-+|-+.+=+
T Consensus 18 ~~G~klmqCLp~p~dVk~ALEvYKlsLEI 46 (65)
T 4b0f_A 18 LTGKRLMQCLPNPEDVKMALEVYKLSLEI 46 (65)
T ss_dssp HHHHHHTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhcCCCHHHHhHHhheeechhhH
Confidence 4688999974 688999999999866543
No 8
>3cwx_A Protein CAGD, HP0525, CAG24; CAG-pathogenicity island, type IV secretion system, T4SS, unknown function; 2.30A {Helicobacter pylori} PDB: 3cwy_A
Probab=4.16 E-value=2.3e+02 Score=19.81 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q psy11790 86 ILAYNLFQTVYNAW 99 (110)
Q Consensus 86 l~~yNl~~vv~S~~ 99 (110)
-.+||.++++|+.|
T Consensus 135 nklynmllavfnsy 148 (176)
T 3cwx_A 135 NKLYNMLLAVFNSY 148 (176)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHccC
Confidence 46899999998754
No 9
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=3.91 E-value=93 Score=22.74 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=10.6
Q ss_pred hccchhhc-cCCCccch
Q psy11790 68 HIGPKYMK-DRKPMNIK 83 (110)
Q Consensus 68 ~~G~~~Mk-~RkP~~Lk 83 (110)
+..|-+|| |||.+.|+
T Consensus 44 ~~tPi~MKKnRPg~~L~ 60 (186)
T 3c19_A 44 HAVPCVTKKNRPGHVLV 60 (186)
T ss_dssp EEEEEEETTTEEEEEEE
T ss_pred EeeeceEeCCCceEEEE
Confidence 56788887 46666554
No 10
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=3.90 E-value=1.3e+03 Score=17.20 Aligned_cols=50 Identities=6% Similarity=-0.150 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhccchhhccCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy11790 56 IGTLVVYLAFVLHIGPKYMKDRKPMNIKYIILAYNLFQTVYNAWIVSKDF 105 (110)
Q Consensus 56 i~i~~~YL~~V~~~G~~~Mk~RkP~~Lk~~l~~yNl~~vv~S~~m~~~~~ 105 (110)
+.-++.|.+.+....-..-..|-|-.....+.+.-+..+++|.|+.+...
T Consensus 74 ~~G~~~y~~v~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~fs~yL~y~~~ 123 (291)
T 3kp9_A 74 AVGLLGFLGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMV 123 (291)
T ss_dssp HHHHHHHHHHHHHHHCC--CTTCSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667776655322111111222222233555666778888888877644
Done!