Query psy11790
Match_columns 110
No_of_seqs 131 out of 754
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 19:04:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11790.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11790hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d8za2 g.39.1.3 (A:33-64) Fou 12.2 26 0.0019 17.5 0.3 16 69-84 10-26 (32)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 10.7 1.1E+02 0.0082 15.3 4.5 21 76-96 6-26 (37)
3 d1gsaa1 c.30.1.3 (A:1-122) Pro 8.4 65 0.0048 19.7 1.3 19 71-89 82-100 (122)
4 d2glia2 g.37.1.1 (A:135-167) F 5.0 1.9E+02 0.014 14.1 1.7 15 75-89 12-26 (33)
5 d1rlma_ c.108.1.10 (A:) Sugar 3.9 1.2E+02 0.0087 19.2 0.5 13 69-81 257-269 (269)
6 d1ikpa3 f.1.5.1 (A:252-394) Ex 3.6 5E+02 0.037 16.1 3.5 32 72-103 20-51 (143)
7 d1oywa1 a.4.5.43 (A:407-516) D 2.7 1.4E+02 0.01 17.5 -0.2 16 69-84 91-106 (110)
8 d1ef1a2 b.55.1.5 (A:199-297) M 2.4 1.3E+02 0.0096 17.2 -0.5 7 73-79 93-99 (99)
9 d1ecwa_ a.61.1.1 (A:) SIV matr 2.4 4E+02 0.029 16.3 1.9 16 83-98 68-83 (114)
10 d2gola1 a.61.1.1 (A:7-107) HIV 2.4 4.2E+02 0.03 15.9 1.9 11 88-98 72-82 (101)
No 1
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.17 E-value=26 Score=17.54 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=11.7
Q ss_pred ccch-hhccCCCccchh
Q psy11790 69 IGPK-YMKDRKPMNIKY 84 (110)
Q Consensus 69 ~G~~-~Mk~RkP~~Lk~ 84 (110)
.|+| .||+-+|+-++-
T Consensus 10 ~GQry~~rd~~PyC~~C 26 (32)
T d2d8za2 10 SGQRFTARDDFAYCLNC 26 (32)
T ss_dssp TTSCCEESSSSEECHHH
T ss_pred cCceeeecCCCeehHHh
Confidence 5666 488999987654
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.66 E-value=1.1e+02 Score=15.32 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.8
Q ss_pred cCCCccchhHHHHHHHHHHHH
Q psy11790 76 DRKPMNIKYIILAYNLFQTVY 96 (110)
Q Consensus 76 ~RkP~~Lk~~l~~yNl~~vv~ 96 (110)
|++|.+|.+.-..|-+.++..
T Consensus 6 n~q~veLNrtsLy~GlLlifv 26 (37)
T d2axtl1 6 NRQPVELNRTSLYLGLLLILV 26 (37)
T ss_dssp SCCCBCCCHHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHHH
Confidence 578999999999998876543
No 3
>d1gsaa1 c.30.1.3 (A:1-122) Prokaryotic glutathione synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.44 E-value=65 Score=19.69 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=14.8
Q ss_pred chhhccCCCccchhHHHHH
Q psy11790 71 PKYMKDRKPMNIKYIILAY 89 (110)
Q Consensus 71 ~~~Mk~RkP~~Lk~~l~~y 89 (110)
--+||.-|||+.+++-..|
T Consensus 82 ~i~mRkDPPfd~~Yl~~T~ 100 (122)
T d1gsaa1 82 VILMRKDPPFDTEFIYATY 100 (122)
T ss_dssp EEEECCCCCCCHHHHHHHH
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 3479999999998776555
No 4
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.99 E-value=1.9e+02 Score=14.08 Aligned_cols=15 Identities=13% Similarity=0.654 Sum_probs=9.8
Q ss_pred ccCCCccchhHHHHH
Q psy11790 75 KDRKPMNIKYIILAY 89 (110)
Q Consensus 75 k~RkP~~Lk~~l~~y 89 (110)
++.+||+-+.-|+.+
T Consensus 12 R~~~pf~a~YkLv~H 26 (33)
T d2glia2 12 RELRPFKAQYMLVVH 26 (33)
T ss_dssp TTTCCCSSHHHHHHH
T ss_pred CCCCcchhHHHHHHH
Confidence 345788877766654
No 5
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}
Probab=3.85 E-value=1.2e+02 Score=19.20 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=7.4
Q ss_pred ccchhhccCCCcc
Q psy11790 69 IGPKYMKDRKPMN 81 (110)
Q Consensus 69 ~G~~~Mk~RkP~~ 81 (110)
...++.++|.||+
T Consensus 257 ~i~~~l~~~~~~~ 269 (269)
T d1rlma_ 257 VIQAVLDNTYPFN 269 (269)
T ss_dssp HHHHHHHTCTTCC
T ss_pred HHHHHHhcCCCCC
Confidence 3455666666664
No 6
>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.62 E-value=5e+02 Score=16.10 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=25.3
Q ss_pred hhhccCCCccchhHHHHHHHHHHHHHHHHHHH
Q psy11790 72 KYMKDRKPMNIKYIILAYNLFQTVYNAWIVSK 103 (110)
Q Consensus 72 ~~Mk~RkP~~Lk~~l~~yNl~~vv~S~~m~~~ 103 (110)
.+-++|||=.+.....+=--.|-+.|+|.+-+
T Consensus 20 T~~R~R~PR~~~~~~~C~Y~~Q~iVsL~~A~R 51 (143)
T d1ikpa3 20 TFTRHRQPRGAEQLEQCGYPVQRLVALYLAAR 51 (143)
T ss_dssp GGGCSSCCCSCHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHhhccCCCCchhhHhcccHHHHHHHHHHHHH
Confidence 57889999999888887777787888777644
No 7
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=2.65 E-value=1.4e+02 Score=17.46 Aligned_cols=16 Identities=0% Similarity=0.177 Sum_probs=11.2
Q ss_pred ccchhhccCCCccchh
Q psy11790 69 IGPKYMKDRKPMNIKY 84 (110)
Q Consensus 69 ~G~~~Mk~RkP~~Lk~ 84 (110)
-|..++++++++.|+.
T Consensus 91 ~g~~~l~g~~~v~l~~ 106 (110)
T d1oywa1 91 AARPVLRGESSLQLAV 106 (110)
T ss_dssp GGHHHHHTSSCCEEEC
T ss_pred HHHHHhCCCceEEEec
Confidence 3556788888887753
No 8
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.42 E-value=1.3e+02 Score=17.18 Aligned_cols=7 Identities=71% Similarity=1.426 Sum_probs=4.5
Q ss_pred hhccCCC
Q psy11790 73 YMKDRKP 79 (110)
Q Consensus 73 ~Mk~RkP 79 (110)
+|+.|+|
T Consensus 93 f~~~r~p 99 (99)
T d1ef1a2 93 YMRRRKP 99 (99)
T ss_dssp HHHHHCC
T ss_pred HHhccCC
Confidence 4666776
No 9
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency virus [TaxId: 11723]}
Probab=2.42 E-value=4e+02 Score=16.28 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHH
Q psy11790 83 KYIILAYNLFQTVYNA 98 (110)
Q Consensus 83 k~~l~~yNl~~vv~S~ 98 (110)
.-+--+||.+.+++|+
T Consensus 68 eeLkSL~ntvavLyCV 83 (114)
T d1ecwa_ 68 ENLKSLYNTVCVIWCI 83 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhhh
Confidence 3455688888888775
No 10
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=2.37 E-value=4.2e+02 Score=15.87 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q psy11790 88 AYNLFQTVYNA 98 (110)
Q Consensus 88 ~yNl~~vv~S~ 98 (110)
+||.+.+++|.
T Consensus 72 L~ntvavLyCV 82 (101)
T d2gola1 72 LYNTIAVLYCV 82 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HhhceeeEEEE
Done!