Query psy11791
Match_columns 143
No_of_seqs 210 out of 1413
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:04:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4226|consensus 99.7 9.6E-17 2.1E-21 126.1 5.6 88 7-97 193-307 (379)
2 PF14604 SH3_9: Variant SH3 do 99.6 5.8E-16 1.3E-20 93.1 5.6 49 10-61 1-49 (49)
3 KOG0197|consensus 99.6 1.1E-16 2.4E-21 134.2 1.9 126 6-134 12-168 (468)
4 PF07653 SH3_2: Variant SH3 do 99.5 9.2E-14 2E-18 85.1 6.0 53 7-62 1-54 (55)
5 PF00018 SH3_1: SH3 domain; I 99.5 8.4E-14 1.8E-18 83.0 5.2 47 9-57 1-48 (48)
6 KOG2199|consensus 99.4 4.3E-14 9.3E-19 115.7 1.1 54 7-63 217-270 (462)
7 smart00326 SH3 Src homology 3 99.4 3.2E-12 6.9E-17 77.0 6.7 55 6-62 3-57 (58)
8 cd00174 SH3 Src homology 3 dom 99.3 3.5E-12 7.5E-17 76.0 6.2 52 8-61 2-53 (54)
9 KOG1029|consensus 99.3 2.9E-12 6.2E-17 111.9 3.3 56 6-64 1054-1109(1118)
10 KOG1118|consensus 99.2 6.7E-12 1.4E-16 100.1 2.8 59 4-65 305-363 (366)
11 KOG4792|consensus 99.1 1.1E-11 2.3E-16 95.5 1.2 61 3-65 122-182 (293)
12 KOG4278|consensus 99.1 6.1E-11 1.3E-15 103.0 5.8 85 7-97 92-177 (1157)
13 KOG2070|consensus 99.1 1E-10 2.3E-15 98.3 3.5 56 6-64 18-73 (661)
14 KOG4226|consensus 99.0 4.4E-10 9.6E-15 88.8 5.3 55 8-65 110-164 (379)
15 KOG0162|consensus 99.0 2.7E-10 5.8E-15 99.5 3.5 54 6-62 1052-1105(1106)
16 KOG0515|consensus 99.0 3E-10 6.5E-15 96.4 2.4 55 8-65 686-743 (752)
17 KOG4225|consensus 98.9 6.7E-10 1.5E-14 92.1 4.3 55 8-65 233-287 (489)
18 KOG2856|consensus 98.9 3.7E-10 8.1E-15 92.1 0.9 55 6-62 415-470 (472)
19 KOG2996|consensus 98.8 3.5E-09 7.7E-14 90.8 3.4 54 8-64 808-863 (865)
20 KOG3601|consensus 98.8 5.4E-10 1.2E-14 85.1 -1.3 96 8-113 3-99 (222)
21 KOG1264|consensus 98.8 3.1E-09 6.8E-14 93.9 2.0 60 4-65 773-832 (1267)
22 KOG4348|consensus 98.7 5.8E-08 1.3E-12 81.1 8.0 57 5-64 261-319 (627)
23 KOG4348|consensus 98.7 4.5E-09 9.7E-14 87.6 0.8 60 3-65 98-157 (627)
24 KOG3557|consensus 98.6 1.1E-08 2.3E-13 88.4 1.7 59 5-66 500-558 (721)
25 KOG3875|consensus 98.6 3.7E-09 8E-14 84.7 -1.7 58 6-65 269-332 (362)
26 KOG2546|consensus 98.5 4.8E-08 1E-12 81.1 2.5 54 8-64 426-479 (483)
27 KOG1029|consensus 98.5 6.8E-08 1.5E-12 85.1 3.1 59 6-67 694-754 (1118)
28 KOG4225|consensus 98.5 9.9E-08 2.2E-12 79.4 3.5 52 8-62 435-488 (489)
29 KOG3655|consensus 98.5 4.8E-08 1E-12 81.9 1.2 56 6-63 428-483 (484)
30 KOG1843|consensus 98.4 1.2E-07 2.5E-12 78.5 2.6 53 7-62 418-472 (473)
31 KOG3601|consensus 98.3 2.8E-07 6E-12 70.4 2.4 56 5-63 163-218 (222)
32 KOG2996|consensus 98.1 4.9E-07 1.1E-11 77.9 0.1 107 22-130 625-757 (865)
33 KOG0609|consensus 98.0 2.2E-06 4.8E-11 73.1 1.3 58 6-63 215-281 (542)
34 KOG1702|consensus 98.0 6.8E-06 1.5E-10 62.8 3.5 55 6-62 208-263 (264)
35 KOG2528|consensus 97.6 2E-05 4.4E-10 66.0 1.2 56 7-64 4-60 (490)
36 KOG3632|consensus 97.5 0.0001 2.2E-09 67.0 4.2 58 7-65 1140-1204(1335)
37 KOG3523|consensus 97.3 2.6E-05 5.6E-10 67.6 -1.5 56 7-64 610-666 (695)
38 PF14603 hSH3: Helically-exten 97.3 0.00031 6.8E-09 46.7 3.9 44 20-63 29-72 (89)
39 KOG2222|consensus 97.3 4.7E-05 1E-09 64.9 -0.4 54 7-63 550-603 (848)
40 KOG4773|consensus 97.0 0.00012 2.6E-09 59.8 -0.9 56 8-66 178-233 (386)
41 PF08239 SH3_3: Bacterial SH3 96.9 0.0014 3.1E-08 39.2 3.8 39 23-61 16-55 (55)
42 KOG4575|consensus 96.9 0.0011 2.3E-08 58.2 4.0 56 6-63 9-65 (874)
43 PF00017 SH2: SH2 domain; Int 96.8 8.7E-05 1.9E-09 47.6 -2.5 60 72-132 1-75 (77)
44 KOG3771|consensus 96.7 0.00076 1.6E-08 57.0 1.7 53 6-61 401-454 (460)
45 smart00287 SH3b Bacterial SH3 96.5 0.0081 1.8E-07 36.7 4.8 38 23-60 24-61 (63)
46 smart00252 SH2 Src homology 2 96.3 0.00075 1.6E-08 43.8 -0.5 60 71-132 2-76 (84)
47 KOG3725|consensus 96.3 0.0013 2.7E-08 52.3 0.5 54 6-62 318-373 (375)
48 KOG4429|consensus 96.3 0.0012 2.7E-08 53.2 0.4 54 7-63 365-418 (421)
49 KOG3775|consensus 96.2 0.0028 6.2E-08 52.6 1.9 60 3-64 260-320 (482)
50 KOG1451|consensus 96.1 0.0057 1.2E-07 53.4 3.3 52 8-62 759-811 (812)
51 PRK10884 SH3 domain-containing 96.0 0.0098 2.1E-07 45.7 4.0 41 24-64 48-89 (206)
52 KOG0199|consensus 95.7 0.015 3.3E-07 52.2 4.6 53 6-62 377-431 (1039)
53 cd00173 SH2 Src homology 2 dom 95.7 0.0038 8.3E-08 41.0 0.6 25 71-97 1-25 (94)
54 KOG3565|consensus 95.7 0.0026 5.6E-08 56.3 -0.4 56 6-63 579-636 (640)
55 KOG4792|consensus 95.3 0.023 5E-07 44.4 3.9 57 7-64 229-285 (293)
56 KOG0040|consensus 95.1 0.00032 7E-09 66.2 -8.0 55 7-64 970-1024(2399)
57 KOG3632|consensus 93.1 0.25 5.5E-06 45.8 6.2 60 7-66 449-513 (1335)
58 PF06347 SH3_4: Bacterial SH3 92.7 0.24 5.1E-06 29.6 3.8 36 23-60 18-53 (55)
59 COG3103 SH3 domain protein [Si 92.3 0.24 5.3E-06 38.1 4.4 40 25-64 49-89 (205)
60 PRK13914 invasion associated s 91.5 0.35 7.6E-06 41.7 4.8 40 24-63 103-142 (481)
61 KOG3812|consensus 88.3 0.28 6.1E-06 40.7 1.7 50 8-57 61-117 (475)
62 smart00743 Agenet Tudor-like d 77.3 3.4 7.3E-05 24.9 3.0 23 25-47 2-24 (61)
63 KOG0790|consensus 73.2 1.4 3.1E-05 37.9 0.6 26 71-97 111-136 (600)
64 PF12913 SH3_6: SH3 domain of 72.9 9 0.0002 23.2 3.9 34 23-57 20-54 (54)
65 PF11302 DUF3104: Protein of u 72.6 5 0.00011 26.0 2.9 25 23-47 3-33 (75)
66 KOG0708|consensus 64.2 2 4.3E-05 35.8 -0.3 57 5-61 66-130 (359)
67 KOG3705|consensus 62.5 9.1 0.0002 32.7 3.3 54 8-63 512-566 (580)
68 KOG3580|consensus 57.4 20 0.00043 32.4 4.5 55 6-62 505-567 (1027)
69 PF07425 Pardaxin: Pardaxin; 49.5 3.1 6.8E-05 21.9 -0.9 16 123-138 2-17 (33)
70 KOG1930|consensus 48.8 6.5 0.00014 33.5 0.3 25 71-97 213-237 (483)
71 KOG1264|consensus 46.5 11 0.00023 35.2 1.3 26 71-97 649-674 (1267)
72 KOG4384|consensus 43.0 15 0.00032 30.6 1.5 56 8-64 139-194 (361)
73 PRK13545 tagH teichoic acids e 37.7 45 0.00097 29.5 3.7 38 28-65 374-416 (549)
74 COG3807 Uncharacterized protei 33.7 21 0.00046 26.4 1.0 37 24-61 59-95 (171)
75 PF05641 Agenet: Agenet domain 28.8 59 0.0013 20.0 2.3 22 26-47 1-25 (68)
76 PF11347 DUF3148: Protein of u 25.5 1.7E+02 0.0036 18.3 3.8 33 26-59 30-62 (63)
77 smart00333 TUDOR Tudor domain. 25.1 1.2E+02 0.0026 17.3 3.2 22 25-47 2-23 (57)
78 COG3123 Uncharacterized protei 24.5 1.8E+02 0.004 19.4 4.1 50 7-61 30-79 (94)
79 KOG0194|consensus 20.8 35 0.00075 29.6 0.1 23 71-97 50-72 (474)
No 1
>KOG4226|consensus
Probab=99.66 E-value=9.6e-17 Score=126.11 Aligned_cols=88 Identities=26% Similarity=0.516 Sum_probs=75.7
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecC--CCCceEEEeCCCceEEEcCCceeeeeccC------C----------
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT--NKDWWQVIRSSGKPFYVPASYVEVYKKLS------N---------- 68 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~--~~~WW~~r~~~g~~G~vPsnyv~~~~~~~------~---------- 68 (143)
.|+|||.|+...+. ||+|.+||.+.|+++- +++||++|+..|+.|+||.|||..+.... .
T Consensus 193 vVvaLYsFsssnde--ELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~ts~~~~~s~~pq~sgn 270 (379)
T KOG4226|consen 193 VVVALYSFSSSNDE--ELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPSTSKALHPSHAPQISGN 270 (379)
T ss_pred EEEEEecccCCChh--hcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccccccCCccccccccCC
Confidence 47899999977777 9999999999999885 77999999999999999999999863211 0
Q ss_pred ---------CCCCcccCCCccccccccCcCCCCCCceE
Q psy11791 69 ---------GNRNNVENINPTMEKTRSYSEGNDKGGFV 97 (143)
Q Consensus 69 ---------~~~w~~~~i~r~~~e~ll~~~g~~~G~F~ 97 (143)
+..||.++|+|.|||..|-..|-+ |.|+
T Consensus 271 ~p~~sg~~ag~~WYyG~itR~qae~~Ln~hG~e-GdFL 307 (379)
T KOG4226|consen 271 GPSSSGRFAGRPWYYGNITRHQAECALNEHGHE-GDFL 307 (379)
T ss_pred CCCccccccCCcceeccccHHHHHHHHhccCcc-CceE
Confidence 016999999999999999888888 9998
No 2
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.63 E-value=5.8e-16 Score=93.09 Aligned_cols=49 Identities=29% Similarity=0.704 Sum_probs=43.8
Q ss_pred EeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCcee
Q psy11791 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61 (143)
Q Consensus 10 alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~ 61 (143)
|+|||.++..+ ||+|++||.|.|+.+.+++||.+++ +|+.|+||++||+
T Consensus 1 Al~~y~~~~~d--ELs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPD--ELSFKKGDVITVLEKSDDGWWYGRN-TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTT--B-EB-TTEEEEEEEESSTSEEEEEE-TTEEEEEEGGGEE
T ss_pred CCccCCCCCcC--EeeEcCCCEEEEEEeCCCCEEEEEE-CCEEEEECHHhCC
Confidence 78999987777 9999999999999998999999998 9999999999995
No 3
>KOG0197|consensus
Probab=99.62 E-value=1.1e-16 Score=134.22 Aligned_cols=126 Identities=22% Similarity=0.413 Sum_probs=97.1
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCE-EEEEecCCCCceEEEeC-CCceEEEcCCceeeee---c--cCCCCCCcccCCC
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEK-LFLIKKTNKDWWQVIRS-SGKPFYVPASYVEVYK---K--LSNGNRNNVENIN 78 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~-l~vl~~~~~~WW~~r~~-~g~~G~vPsnyv~~~~---~--~~~~~~w~~~~i~ 78 (143)
..++|+|||.+.... +|+|.+|++ +.+++..+.+||+++.. .|.+||||+|||.... . ..+...||.++|+
T Consensus 12 ~~~valyd~~s~~~~--dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~is 89 (468)
T KOG0197|consen 12 TIVVALYDYASRTPE--DLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGKIS 89 (468)
T ss_pred ceEEEeccccCCCcc--ccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhcccc
Confidence 368999999876655 999999999 88888888999999886 6899999999999752 1 1122369999999
Q ss_pred ccccccccCcCCCCCCceE-------------EEeceecccCCCceec-----------cCcccccccCCCCCCCCccCC
Q psy11791 79 PTMEKTRSYSEGNDKGGFV-------------SVKDRAISIDNNSSIK-----------QKPKVAKRTIFPVIPSYENIP 134 (143)
Q Consensus 79 r~~~e~ll~~~g~~~G~F~-------------sv~~~~~~~~~~~~vk-----------~~~~l~e~~~f~~ip~li~~~ 134 (143)
|.+||++|+.+++..|+|+ ||.+...+. ++..|+ ..+.++++++|++|++|++--
T Consensus 90 R~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~-~~~~v~hyri~~~~~~~~~~~~~~~~~F~~l~~lv~~~ 168 (468)
T KOG0197|consen 90 REEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGG-LGAKVKHYRIRQLDGGGLYPYIDERELFSSLQQLVNYY 168 (468)
T ss_pred HHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccC-CccceeeeeeeEcCCCCeecCCCHHHhhhhHHHHHhhh
Confidence 9999988888877779999 555554331 222332 233389999999999887643
No 4
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.48 E-value=9.2e-14 Score=85.11 Aligned_cols=53 Identities=23% Similarity=0.579 Sum_probs=45.6
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEE-ecCCCCceEEEeCCCceEEEcCCceee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLI-KKTNKDWWQVIRSSGKPFYVPASYVEV 62 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl-~~~~~~WW~~r~~~g~~G~vPsnyv~~ 62 (143)
+++|++||.+...+ +|+|++||++.|+ ++.+.+||.++. +|+.|+||++||++
T Consensus 1 ~~~a~~d~~~~~~~--~Ls~~~Gd~i~v~~~~~~~~ww~~~~-~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPD--ELSFKKGDVIEVLGEKDDDGWWLGEN-NGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTT--B-EB-TTEEEEEEEEECSTSEEEEEE-TTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCC--ceEEecCCEEEEEEeecCCCEEEEEE-CCcEEEEcHHHEEE
Confidence 47899999866555 9999999999999 777889999999 99999999999986
No 5
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.47 E-value=8.4e-14 Score=83.01 Aligned_cols=47 Identities=34% Similarity=0.773 Sum_probs=41.9
Q ss_pred EEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCC-CceEEEcC
Q psy11791 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSS-GKPFYVPA 57 (143)
Q Consensus 9 ~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~-g~~G~vPs 57 (143)
+|+|||.++..+ +|+|++||.+.|+++.+.+||.+++.. |++|+||+
T Consensus 1 ~Alydf~~~~~~--eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPD--ELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTT--BSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCC--EEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 699999977766 999999999999999988999999976 69999996
No 6
>KOG2199|consensus
Probab=99.41 E-value=4.3e-14 Score=115.66 Aligned_cols=54 Identities=17% Similarity=0.507 Sum_probs=49.4
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~ 63 (143)
.|+|||||++...+ ||+|++||+|.|++..+++||+|++ .+..|+||+|||+..
T Consensus 217 kVRALYDFeAaE~n--ELsFkaGdIItVLd~s~~~WWKG~~-~~~~GlFPsnfVT~~ 270 (462)
T KOG2199|consen 217 KVRALYDFEAAEDN--ELSFKAGDIITVLDDSDPNWWKGEN-HRGIGLFPSNFVTAD 270 (462)
T ss_pred hhhhhhcccccCCC--ccceecCcEEEEcccCCcchhcccc-CCcccccchhhhhhh
Confidence 48999999977777 9999999999999999999999998 778899999999863
No 7
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.36 E-value=3.2e-12 Score=77.05 Aligned_cols=55 Identities=25% Similarity=0.601 Sum_probs=48.8
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~ 62 (143)
..++|+|||.+...+ +|+|++||.+.++...+.+||.++...++.|+||++|++.
T Consensus 3 ~~~~a~~~~~~~~~~--~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 3 PQVRALYDYTAQDPD--ELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred cEEEEeeeeCCCCCC--CCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 467899999876666 9999999999999998889999998669999999999975
No 8
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.34 E-value=3.5e-12 Score=76.03 Aligned_cols=52 Identities=29% Similarity=0.662 Sum_probs=46.7
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCcee
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~ 61 (143)
++|+|+|.+...+ +|+|++||.+.++...+.+||.+++..++.|+||.+|++
T Consensus 2 ~~a~~~~~~~~~~--~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPD--ELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCC--CCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6799999877766 999999999999998788999999866699999999986
No 9
>KOG1029|consensus
Probab=99.25 E-value=2.9e-12 Score=111.94 Aligned_cols=56 Identities=23% Similarity=0.597 Sum_probs=51.3
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
+.|.|+|||+++.+| ||+|.+|++|.|+++++++||++.. +|..|+||+|||....
T Consensus 1054 ~qviamYdY~AqndD--ELsF~kgdiI~VlnkdepeWW~Ge~-ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDD--ELSFKKGDIINVLNKDEPEWWSGER-NGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred ceeEEeeccccCCcc--cccccCCCEEEecCCCChhhhcccc-cCccccCccccccccc
Confidence 468899999988888 9999999999999999999999987 8999999999996654
No 10
>KOG1118|consensus
Probab=99.20 E-value=6.7e-12 Score=100.10 Aligned_cols=59 Identities=24% Similarity=0.527 Sum_probs=53.3
Q ss_pred CceEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeeec
Q psy11791 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65 (143)
Q Consensus 4 ~~~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~~ 65 (143)
+.++|+|+|||+++..+ ||.|++||+|.|++..+++||.++. .|..|+||.|||+.+.+
T Consensus 305 ~~p~cralYdFepenEg--EL~fkeGDlI~l~~QIdenWyeG~~-~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 305 DQPCCRALYDFEPENEG--ELDFKEGDLITLTNQIDENWYEGEK-HGESGMFPVNYVEVLVP 363 (366)
T ss_pred cchhheeeeccCCCCCC--ccCcccCceeeehhhcCcchhhhee-cCccCccccceeEEecc
Confidence 34579999999977777 9999999999999999999999998 89999999999998764
No 11
>KOG4792|consensus
Probab=99.14 E-value=1.1e-11 Score=95.55 Aligned_cols=61 Identities=28% Similarity=0.592 Sum_probs=53.5
Q ss_pred CCceEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeeec
Q psy11791 3 LQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65 (143)
Q Consensus 3 ~~~~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~~ 65 (143)
+...+++|+|||.....+ +|.|++|++|.|+++.++.||.+|+..|+.|+||.+||+....
T Consensus 122 ~~~~~vr~~fdF~G~dee--DLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~ 182 (293)
T KOG4792|consen 122 EEAEYVRALFDFNGNDEE--DLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRP 182 (293)
T ss_pred hhhhheeeeeccCCCccc--cCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhh
Confidence 345678999999855555 9999999999999999999999999999999999999998643
No 12
>KOG4278|consensus
Probab=99.14 E-value=6.1e-11 Score=102.96 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=71.9
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecC-CCCceEEEeCCCceEEEcCCceeeeeccCCCCCCcccCCCccccccc
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNRNNVENINPTMEKTR 85 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~-~~~WW~~r~~~g~~G~vPsnyv~~~~~~~~~~~w~~~~i~r~~~e~l 85 (143)
.++|||||-+..++ .|++.+||.+.||.-. +..|..+|.++|+ ||||+||+.....++.. .||.+.++|+.||-+
T Consensus 92 LFVALYDFvasGdn--tLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNSLeKh-sWYHGpvSRsaaEy~ 167 (1157)
T KOG4278|consen 92 LFVALYDFVASGDN--TLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNSLEKH-SWYHGPVSRSAAEYI 167 (1157)
T ss_pred eeEeeeeeeccccc--eeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccchhhc-ccccCccccchhhhh
Confidence 57899999987777 9999999999999876 6679999987887 99999999988765544 499999999999987
Q ss_pred cCcCCCCCCceE
Q psy11791 86 SYSEGNDKGGFV 97 (143)
Q Consensus 86 l~~~g~~~G~F~ 97 (143)
|- .|-. |.|+
T Consensus 168 Ls-SgIn-GSFL 177 (1157)
T KOG4278|consen 168 LS-SGIN-GSFL 177 (1157)
T ss_pred hh-cCcc-cceE
Confidence 74 3443 8898
No 13
>KOG2070|consensus
Probab=99.05 E-value=1e-10 Score=98.29 Aligned_cols=56 Identities=20% Similarity=0.531 Sum_probs=50.7
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
..|+|.|.|..+..| ||+|.+||+|+|....+.+||.+.. +|++||||+|||.++.
T Consensus 18 LvvrAkf~F~gsNnD--ELsf~KgDvItVTq~eeGGWWEGTl-ng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 18 LVVRAKFNFQGSNND--ELSFSKGDVITVTQVEEGGWWEGTL-NGRTGWFPSNYVREIK 73 (661)
T ss_pred eEEEEEeecccCCCc--eeccccCCEEEEEEeccCcceeccc-cCccCccchHHHHHHh
Confidence 458999998866666 9999999999999999999999987 9999999999999876
No 14
>KOG4226|consensus
Probab=99.01 E-value=4.4e-10 Score=88.80 Aligned_cols=55 Identities=18% Similarity=0.480 Sum_probs=48.0
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeeec
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~~ 65 (143)
+++.|.|.++..+ ||++.+|..++|++++.++||++.. +|+.||||+|||++...
T Consensus 110 AvVKf~Y~a~~eD--ELsLtKGtrv~vmEKssDGWWrG~~-ng~VGWFPSNYv~E~~d 164 (379)
T KOG4226|consen 110 AVVKFNYVAERED--ELSLTKGTRVTVMEKSSDGWWRGSY-NGQVGWFPSNYVTEEVD 164 (379)
T ss_pred eEEEEeecccccc--ccccccCcEEEEEEeccCcceeccc-CCeeccccccceehhcc
Confidence 5566777666666 9999999999999999999999988 99999999999998653
No 15
>KOG0162|consensus
Probab=98.99 E-value=2.7e-10 Score=99.51 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=49.3
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~ 62 (143)
..|.|+|||.++..+ ||+|++||++.|+.++..+||.++. +|++|+||.+||++
T Consensus 1052 p~~~A~Y~y~gq~~d--Els~~~~diIei~~edpSGWw~gk~-~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVD--ELSFKKGDIIEIMREDPSGWWLGKL-NGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcc--cccccCCCEEEEeccCCCcchhhcc-CCcccccccccccc
Confidence 568999999977555 9999999999999999999999996 99999999999975
No 16
>KOG0515|consensus
Probab=98.95 E-value=3e-10 Score=96.41 Aligned_cols=55 Identities=27% Similarity=0.727 Sum_probs=48.0
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecCCC---CceEEEeCCCceEEEcCCceeeeec
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK---DWWQVIRSSGKPFYVPASYVEVYKK 65 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~---~WW~~r~~~g~~G~vPsnyv~~~~~ 65 (143)
+.|||||+++-.| ||+|+.||.++||.+++. +||+++. +|++||||.||+-....
T Consensus 686 vYAlwdYeaqf~D--ELsf~eGd~lTvirr~d~~eteWWwa~l-ng~eGyVPRnylgLyPr 743 (752)
T KOG0515|consen 686 VYALWDYEAQFED--ELSFDEGDELTVIRRDDEVETEWWWARL-NGEEGYVPRNYLGLYPR 743 (752)
T ss_pred eEEeecccccccc--cccccCCceeEEEecCCcchhhhhhHhh-cCcccccchhhhhcCcc
Confidence 5699999977777 999999999999998644 7999995 99999999999976653
No 17
>KOG4225|consensus
Probab=98.95 E-value=6.7e-10 Score=92.15 Aligned_cols=55 Identities=25% Similarity=0.629 Sum_probs=51.5
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeeec
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~~ 65 (143)
++|+|+|.++... ||+|++||+++|+.+.|.+|..|.. +|+.|+||+|||+.++.
T Consensus 233 aralf~F~~qt~k--EL~~~kGDIVyI~rkvD~nWyeGEh-hGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 233 ARALFDFEAQTPK--ELPFNKGDIVYILRKVDQNWYEGEH-HGRVGIFPASYVEILTP 287 (489)
T ss_pred hhheeccccCCcc--ccccCCCCEEEEEeeccCceeeeee-cceecceechheeecCc
Confidence 6899999988887 9999999999999999999999998 99999999999998764
No 18
>KOG2856|consensus
Probab=98.89 E-value=3.7e-10 Score=92.09 Aligned_cols=55 Identities=27% Similarity=0.502 Sum_probs=47.9
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecC-CCCceEEEeCCCceEEEcCCceee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEV 62 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~-~~~WW~~r~~~g~~G~vPsnyv~~ 62 (143)
+.|+|||||.....+ ||+|++||.|..+.+. ..+|.++|...|+.|++|+|||+-
T Consensus 415 v~vraLYDY~gqE~D--ElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~ 470 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGD--ELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVEC 470 (472)
T ss_pred eeEEeeeccCccccc--chhhccccHhhhcCCccccccccccccCCcccccchhhhhc
Confidence 568999999866666 9999999999988775 458999998779999999999974
No 19
>KOG2996|consensus
Probab=98.79 E-value=3.5e-09 Score=90.77 Aligned_cols=54 Identities=24% Similarity=0.493 Sum_probs=44.5
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecC--CCCceEEEeCCCceEEEcCCceeeee
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT--NKDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~--~~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
++|-|||.+.... +|||++||++.|+++. +.+||+++. +|+.||||++||++..
T Consensus 808 AvarYdf~ard~~--eLSlk~GDvV~i~~k~g~d~GWWkGev-ngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 808 AVARYDFCARDMR--ELSLKEGDVVKIYDKVGEDQGWWKGEV-NGRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeccccCCCchh--hcccccCCEEEEehhccccCceeccee-cCcccccccccccccC
Confidence 4556676654444 9999999999999886 468999997 9999999999998753
No 20
>KOG3601|consensus
Probab=98.79 E-value=5.4e-10 Score=85.09 Aligned_cols=96 Identities=14% Similarity=0.224 Sum_probs=77.1
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecC-CCCceEEEeCCCceEEEcCCceeeeeccCCCCCCcccCCCcccccccc
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNRNNVENINPTMEKTRS 86 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~-~~~WW~~r~~~g~~G~vPsnyv~~~~~~~~~~~w~~~~i~r~~~e~ll 86 (143)
+.+++||.+...+ ||+|.+|+.+.+++.. +.+|.++.. .|..|++|.||+.... ..|+.+.++|..+|.+|
T Consensus 3 a~a~n~f~a~i~d--ELsFlkg~~lk~l~~~d~~nw~~ael-~g~~g~~P~Nai~~~~-----~~wve~~i~r~~ae~~l 74 (222)
T KOG3601|consen 3 AVAKNDFLAGIRD--ELSFLKGDNLKILNMEDDINWYKAEL-DGPEGFIPKNAIRMKP-----HEWVEGLIPRPLAEDLL 74 (222)
T ss_pred hhhhhhhhhcCcc--cceeecCCceEecchHHhhhhhhHhh-cCccccCccccccccc-----ccceecccccchhhhhh
Confidence 4678999888888 9999999999999875 447988876 9999999999996532 24999999999999988
Q ss_pred CcCCCCCCceEEEeceecccCCCceec
Q psy11791 87 YSEGNDKGGFVSVKDRAISIDNNSSIK 113 (143)
Q Consensus 87 ~~~g~~~G~F~sv~~~~~~~~~~~~vk 113 (143)
+. +..|+|+...+++--.+..++++
T Consensus 75 ~~--~~~G~fl~r~s~sSPg~fsgsvr 99 (222)
T KOG3601|consen 75 SK--KRDGDFLIRLSESSPGDFSGSVR 99 (222)
T ss_pred hc--cCcchhhhhhhhcCccccccccc
Confidence 65 66699997777654335666664
No 21
>KOG1264|consensus
Probab=98.75 E-value=3.1e-09 Score=93.85 Aligned_cols=60 Identities=25% Similarity=0.488 Sum_probs=53.1
Q ss_pred CceEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeeec
Q psy11791 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65 (143)
Q Consensus 4 ~~~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~~ 65 (143)
.++.|+|||||.++..+ ||+|.+|-+|..+.++..+||+++..+...+|||+|||+++..
T Consensus 773 ~~vt~kAL~~Yka~r~D--ELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 773 PQVTVKALYDYKAKRSD--ELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred cchhhhhhhccccCCcc--cccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence 35679999999988888 9999999999999999889999998445789999999998753
No 22
>KOG4348|consensus
Probab=98.70 E-value=5.8e-08 Score=81.06 Aligned_cols=57 Identities=26% Similarity=0.544 Sum_probs=51.0
Q ss_pred ceEEEEeeccCCCCCCCCceecCCCCEEEEEecC--CCCceEEEeCCCceEEEcCCceeeee
Q psy11791 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT--NKDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 5 ~~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~--~~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
.-+|+++|.|+++.++ ||.|+.||++.+|.++ +.+||.+.. +|+.|.||.|||+.+.
T Consensus 261 Keycrv~F~Ye~qndD--ELt~KEgdil~lItK~cgdaGWweGEL-nGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDD--ELTLKEGDILILITKNCGDAGWWEGEL-NGKKGVFPDNFVELVQ 319 (627)
T ss_pred hhheeeeeeecCCCcc--ceeeccccEEEEecccccccceeeeee-cCccccCCchhhhhcC
Confidence 3479999999988888 9999999999999886 558999987 9999999999998765
No 23
>KOG4348|consensus
Probab=98.68 E-value=4.5e-09 Score=87.58 Aligned_cols=60 Identities=20% Similarity=0.401 Sum_probs=53.3
Q ss_pred CCceEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeeec
Q psy11791 3 LQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65 (143)
Q Consensus 3 ~~~~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~~ 65 (143)
.+...|+++|.|..+.++ ||.|+.||+|.|+.+..++||.+.. +|+.|+||+|||.+++.
T Consensus 98 ~~~r~c~v~f~Y~pqndD--ELelkVGDiIeli~eVEeGWw~G~L-ngk~GmFPsNFVkel~~ 157 (627)
T KOG4348|consen 98 PQARICVVTFAYSPQNDD--ELELKVGDIIELISEVEEGWWKGKL-NGKVGMFPSNFVKELPT 157 (627)
T ss_pred ccceeEEEEEeecCCCCc--eeeeeeccHHHhhhHhhhhhhhcee-cCcccccchhhceecCC
Confidence 345679999998877777 9999999999999999999999987 89999999999999754
No 24
>KOG3557|consensus
Probab=98.63 E-value=1.1e-08 Score=88.42 Aligned_cols=59 Identities=25% Similarity=0.556 Sum_probs=51.2
Q ss_pred ceEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeeecc
Q psy11791 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKL 66 (143)
Q Consensus 5 ~~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~~~ 66 (143)
..+++++|||.+.... ||++.+||++.|+++ ...||++++..|+.||||+|.+..+...
T Consensus 500 ~k~~~~~Ydf~arNs~--ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~ 558 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSS--ELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE 558 (721)
T ss_pred ceeeeeehhhhcccch--hhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence 3478899999877666 999999999999976 5689999999999999999999887543
No 25
>KOG3875|consensus
Probab=98.60 E-value=3.7e-09 Score=84.65 Aligned_cols=58 Identities=21% Similarity=0.424 Sum_probs=48.2
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCC-----CCceEEEeC-CCceEEEcCCceeeeec
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN-----KDWWQVIRS-SGKPFYVPASYVEVYKK 65 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~-----~~WW~~r~~-~g~~G~vPsnyv~~~~~ 65 (143)
..++|+|||.+... .||+|++||.|.|+.+++ .+||..+.. .|.+|+||.|||+.+..
T Consensus 269 ~~arA~YdF~a~np--~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNP--VELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCH--HHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 45789999886555 599999999999988763 359999987 55889999999998764
No 26
>KOG2546|consensus
Probab=98.52 E-value=4.8e-08 Score=81.08 Aligned_cols=54 Identities=28% Similarity=0.632 Sum_probs=48.8
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeee
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
|+++|||++...+ ||+|.+|-+|+|+.+.+++||.+-. +|.+|+||.|||+.+.
T Consensus 426 Vv~iydy~~~Kdd--eLsf~E~ailyv~kknddgw~EgV~-~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 426 VVAIYDYTADKDD--ELSFAEGAILYVLKKNDDGWYEGVQ-DGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHhhccccccccc--ccccccccEEEEEEecCCcchhhee-cCcceeccCccccccc
Confidence 6789999877777 9999999999999999999999876 8899999999998764
No 27
>KOG1029|consensus
Probab=98.50 E-value=6.8e-08 Score=85.10 Aligned_cols=59 Identities=22% Similarity=0.482 Sum_probs=49.4
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecC--CCCceEEEeCCCceEEEcCCceeeeeccC
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT--NKDWWQVIRSSGKPFYVPASYVEVYKKLS 67 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~--~~~WW~~r~~~g~~G~vPsnyv~~~~~~~ 67 (143)
+.|+|||.|+++..+ |++|..||+|.|-.+. .++|.-+.. .|+.||||.|||+.+...+
T Consensus 694 vkyrAly~FeaRs~d--Eisf~pGDII~V~esq~aEPGWlaGel-~gktGWFPenyvEki~~~e 754 (1118)
T KOG1029|consen 694 VKYRALYPFEARSHD--EISFEPGDIIIVFESQAAEPGWLAGEL-RGKTGWFPENYVEKIPAVE 754 (1118)
T ss_pred EEEeeecccccCCcc--cccccCCCEEEEehhccCCccccccee-ccccCcCcHHHHhhcccCC
Confidence 568999999988888 9999999999887664 457766655 9999999999999876544
No 28
>KOG4225|consensus
Probab=98.48 E-value=9.9e-08 Score=79.44 Aligned_cols=52 Identities=25% Similarity=0.530 Sum_probs=47.2
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEE--EeCCCceEEEcCCceee
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV--IRSSGKPFYVPASYVEV 62 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~--r~~~g~~G~vPsnyv~~ 62 (143)
++|||.|.++..+ ||.|+.||+|.|+++.+++|.-+ ++ .|+-|.||.|||+.
T Consensus 435 yrAly~Y~pqned--eLEl~egDii~VmeKcddgWfvGts~r-tg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 435 YRALYSYRPQNED--ELELREGDIIDVMEKCDDGWFVGTSRR-TGKFGTFPGNYVKR 488 (489)
T ss_pred ceeccccCCCCch--hheeccCCEEeeeecccCcceecccee-cccccccCcccccc
Confidence 7999999877777 99999999999999999999988 54 78999999999974
No 29
>KOG3655|consensus
Probab=98.46 E-value=4.8e-08 Score=81.91 Aligned_cols=56 Identities=25% Similarity=0.547 Sum_probs=49.1
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~ 63 (143)
..++|+|||++-.+ .+++|..++.|.+|+..+.+||+++-.+|..|+||+|||+.+
T Consensus 428 q~A~A~~dyqAAdd--tEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 428 QTARALYDYQAADD--TEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCccccccccccCC--cccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 34789999885544 599999999999999999999999988999999999999753
No 30
>KOG1843|consensus
Probab=98.42 E-value=1.2e-07 Score=78.48 Aligned_cols=53 Identities=28% Similarity=0.567 Sum_probs=46.5
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecCCC--CceEEEeCCCceEEEcCCceee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK--DWWQVIRSSGKPFYVPASYVEV 62 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~--~WW~~r~~~g~~G~vPsnyv~~ 62 (143)
.++|+|+|..+..+ +|+|++||+|.+|++.+. +||+++. ++.+|++|+|||+.
T Consensus 418 ~a~a~ysfage~~G--Dl~f~kgDii~il~ks~s~~dwwtgr~-~~~egifPanyv~~ 472 (473)
T KOG1843|consen 418 IATALYSFAGEQPG--DLSFQKGDIITILKKSDSANDWWTGRG-NGYEGIFPANYVSL 472 (473)
T ss_pred eeeeeehhccCCCC--CcccccCceEEEecCCcchhhHHHhhc-cccccccccceecc
Confidence 58899999866655 999999999999999754 7999987 99999999999963
No 31
>KOG3601|consensus
Probab=98.33 E-value=2.8e-07 Score=70.41 Aligned_cols=56 Identities=21% Similarity=0.466 Sum_probs=49.8
Q ss_pred ceEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeee
Q psy11791 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (143)
Q Consensus 5 ~~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~ 63 (143)
..++.|+|||.+.... +|.|+.|+.+.+++.++..||.++. .|+.|+||++||...
T Consensus 163 ~~yqQa~~df~~~pp~--ql~f~~gq~~~v~~~ss~~ww~Gs~-lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 163 NYYQQALYDFQPQPPG--QLAFRRGQQIQVLDSSSPFWWFGSK-LGRAGIFPAGYVAPS 218 (222)
T ss_pred chhhhhcCCCCCCCch--hhccccCCcceeecCCCcchhhccc-cCceeeecCcccccc
Confidence 3467899999876666 9999999999999999999999987 899999999999753
No 32
>KOG2996|consensus
Probab=98.14 E-value=4.9e-07 Score=77.92 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=72.8
Q ss_pred CceecCCCCEEEEEecC-CCCceEEEeCC-CceEEEcCCceeeeeccCCCC----------CCcccCCCccccccccCcC
Q psy11791 22 KYVRIQEGEKLFLIKKT-NKDWWQVIRSS-GKPFYVPASYVEVYKKLSNGN----------RNNVENINPTMEKTRSYSE 89 (143)
Q Consensus 22 ~eLs~~~Gd~l~vl~~~-~~~WW~~r~~~-g~~G~vPsnyv~~~~~~~~~~----------~w~~~~i~r~~~e~ll~~~ 89 (143)
--|.++.|+++.++.-+ ...||.+|+.. +..|+||++-|........++ .||++.|.|++||..|.
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~~~d~s~~~WyaG~MERaqaes~Lk-- 702 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYVPTDYSEFPWYAGEMERAQAESTLK-- 702 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCCccchhhhhhhcchHhhhhhhhHhh--
Confidence 36889999999988765 55799999854 478999999998754333211 69999999999999884
Q ss_pred CCCCCceE---EEe---ceeccc----CCCceec-cCcc---cccccCCCCCCCC
Q psy11791 90 GNDKGGFV---SVK---DRAISI----DNNSSIK-QKPK---VAKRTIFPVIPSY 130 (143)
Q Consensus 90 g~~~G~F~---sv~---~~~~~~----~~~~~vk-~~~~---l~e~~~f~~ip~l 130 (143)
+...|.|+ +.. .-++++ +-++.+- ++-. ++|++.|+|.-+|
T Consensus 703 ~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~EL 757 (865)
T KOG2996|consen 703 NRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVEL 757 (865)
T ss_pred cCCCceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHH
Confidence 45558898 211 122332 2222111 2222 7999999887655
No 33
>KOG0609|consensus
Probab=97.99 E-value=2.2e-06 Score=73.12 Aligned_cols=58 Identities=24% Similarity=0.534 Sum_probs=48.2
Q ss_pred eEEEEeeccCCCCCC-----CCceecCCCCEEEEEecCCCCceEEEeCC----CceEEEcCCceeee
Q psy11791 6 VTLKVLYDFDYSTKD-----GKYVRIQEGEKLFLIKKTNKDWWQVIRSS----GKPFYVPASYVEVY 63 (143)
Q Consensus 6 ~~~~alydf~~~~~~-----~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~----g~~G~vPsnyv~~~ 63 (143)
++++|+|||+...++ +-.|+|++||++.|++++|..||+++... +..|+||+....+.
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer 281 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER 281 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence 678999999865543 25689999999999999999999998742 57899999887764
No 34
>KOG1702|consensus
Probab=97.97 E-value=6.8e-06 Score=62.81 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=45.4
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEe-CCCceEEEcCCceee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEV 62 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~-~~g~~G~vPsnyv~~ 62 (143)
...+|.|||.++..+ +++|+-||.|.-+...+++|..+.. ..|.+|..|+||++.
T Consensus 208 ktyra~ydysaqded--evsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDED--EVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred ccchhhccCcccCcc--eeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence 347899998866655 9999999999989888889866543 368999999999974
No 35
>KOG2528|consensus
Probab=97.62 E-value=2e-05 Score=66.02 Aligned_cols=56 Identities=32% Similarity=0.501 Sum_probs=49.2
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecC-CCCceEEEeCCCceEEEcCCceeeee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~-~~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
.++|+|||...... +|++..||++.+...+ .++||.+++..|..|+||+.||+...
T Consensus 4 k~RamyDf~~E~~s--Elsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 4 KARAMYDFQSEGHS--ELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred chhhhcchhhcccc--cccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 46899999866555 9999999999999886 56899999999999999999999864
No 36
>KOG3632|consensus
Probab=97.51 E-value=0.0001 Score=67.01 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=47.2
Q ss_pred EEEEeeccCCCCCC------CCceecCCCCEEEEEecC-CCCceEEEeCCCceEEEcCCceeeeec
Q psy11791 7 TLKVLYDFDYSTKD------GKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEVYKK 65 (143)
Q Consensus 7 ~~~alydf~~~~~~------~~eLs~~~Gd~l~vl~~~-~~~WW~~r~~~g~~G~vPsnyv~~~~~ 65 (143)
.++|||||+..... +-||+|++|++|.|+.+. .++.++++. +|+.|+||+|+|.+...
T Consensus 1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~-ngr~GlIPcNmvae~~v 1204 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL-NGRRGLIPCNMVAEQPV 1204 (1335)
T ss_pred eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc-ccccccccccccccccC
Confidence 57899999764322 258999999999999775 457888886 99999999999998764
No 37
>KOG3523|consensus
Probab=97.34 E-value=2.6e-05 Score=67.57 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=48.5
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeC-CCceEEEcCCceeeee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRS-SGKPFYVPASYVEVYK 64 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~-~g~~G~vPsnyv~~~~ 64 (143)
+|.+...|.+...| +|++..+|++.|+.+..+||..|.+. +|..||||..|++++.
T Consensus 610 Qv~~~~sy~a~q~D--el~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~ 666 (695)
T KOG3523|consen 610 QVQCVHSYKAKQPD--ELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEIT 666 (695)
T ss_pred hhheeeccccCCCc--eeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhc
Confidence 46677787766666 99999999999999999999998764 6899999999999875
No 38
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=97.34 E-value=0.00031 Score=46.74 Aligned_cols=44 Identities=32% Similarity=0.246 Sum_probs=32.0
Q ss_pred CCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeee
Q psy11791 20 DGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (143)
Q Consensus 20 ~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~ 63 (143)
+..+|.+++||.+.||+..+.+-|.+|+..|+-||||.+++...
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~ 72 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL 72 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence 34699999999999999999999999999999999999998654
No 39
>KOG2222|consensus
Probab=97.30 E-value=4.7e-05 Score=64.87 Aligned_cols=54 Identities=22% Similarity=0.403 Sum_probs=47.0
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~ 63 (143)
.++||.||....++ +|.|+++|+++|+...+.+.|.++. +|-.||||+.||+.+
T Consensus 550 rakal~df~r~ddd--elgfrkndiitiisekdehcwvgel-nglrgwfpakfvell 603 (848)
T KOG2222|consen 550 RAKALHDFAREDDD--ELGFRKNDIITIISEKDEHCWVGEL-NGLRGWFPAKFVELL 603 (848)
T ss_pred HHHHHhhhhhcccc--ccccccccEEEEeecCCcceeeecc-ccccccchHHHHHHH
Confidence 36789999754455 9999999999999998999999986 999999999999864
No 40
>KOG4773|consensus
Probab=96.98 E-value=0.00012 Score=59.81 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=48.2
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeeecc
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKL 66 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~~~ 66 (143)
..|++||...... ||.|..|+++.++.+++.+||.+.. .|..||+|.+|+..+...
T Consensus 178 ~~a~~df~gns~~--EL~l~agdV~~~~~r~ek~W~~gk~-R~~~g~yp~sF~~~ld~f 233 (386)
T KOG4773|consen 178 AEASFDFPGNSKL--ELNLVAGDVEFLLSRDEKYWLLGKV-RGLTGYYPDSFVKQLDDF 233 (386)
T ss_pred HHhhccCCCCccc--eeeeehhhHHHHHhhcccceeeeee-ccccccccHHhhhhhccC
Confidence 4578888766666 9999999999999999999999987 889999999999987543
No 41
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=96.94 E-value=0.0014 Score=39.19 Aligned_cols=39 Identities=26% Similarity=0.568 Sum_probs=32.3
Q ss_pred ceecCCCCEEEEEecCCCC-ceEEEeCCCceEEEcCCcee
Q psy11791 23 YVRIQEGEKLFLIKKTNKD-WWQVIRSSGKPFYVPASYVE 61 (143)
Q Consensus 23 eLs~~~Gd~l~vl~~~~~~-WW~~r~~~g~~G~vPsnyv~ 61 (143)
--.+..|+.+.++.....+ |.+++..+|..|||++.||+
T Consensus 16 i~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 16 IGQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred hEEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 3467899999999987555 99997778999999999984
No 42
>KOG4575|consensus
Probab=96.90 E-value=0.0011 Score=58.18 Aligned_cols=56 Identities=14% Similarity=0.439 Sum_probs=43.2
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeC-CCceEEEcCCceeee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRS-SGKPFYVPASYVEVY 63 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~-~g~~G~vPsnyv~~~ 63 (143)
+.++|+|-+..+..+ +|-|..||+++++.-.+.-||-.+.. ....|+||+|||.-+
T Consensus 9 ~~vrA~y~w~ge~eG--dl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 9 CMVRALYAWPGEREG--DLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred ceEEeeccCCCCccc--ccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence 468999997766666 99999999999987755555655544 347799999999543
No 43
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=96.82 E-value=8.7e-05 Score=47.56 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=37.5
Q ss_pred CcccCCCccccccccCcCCCCCCceE---EEec---eeccc-CCCceec------cCc--ccccccCCCCCCCCcc
Q psy11791 72 NNVENINPTMEKTRSYSEGNDKGGFV---SVKD---RAISI-DNNSSIK------QKP--KVAKRTIFPVIPSYEN 132 (143)
Q Consensus 72 w~~~~i~r~~~e~ll~~~g~~~G~F~---sv~~---~~~~~-~~~~~vk------~~~--~l~e~~~f~~ip~li~ 132 (143)
||.++|+|.+|+++|.+ +...|+|+ |-.. -.+.+ .++...+ .+. .+.....|+||++||.
T Consensus 1 W~~g~isr~~Ae~~L~~-~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~ 75 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQ-GKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVE 75 (77)
T ss_dssp TBEESSHHHHHHHHHHT-TSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHH
T ss_pred CcCCCCCHHHHHHHHHh-cCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHH
Confidence 89999999999999988 66669999 1100 01111 1111111 111 2667777999998874
No 44
>KOG3771|consensus
Probab=96.72 E-value=0.00076 Score=57.03 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=39.8
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCC-CCceEEEeCCCceEEEcCCcee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN-KDWWQVIRSSGKPFYVPASYVE 61 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~-~~WW~~r~~~g~~G~vPsnyv~ 61 (143)
..|+++|||.++..+ +|+|+.|++|.|+..++ .+||.++. -|..+-.|.+|+.
T Consensus 401 ~~v~a~~dy~a~~~d--eLsf~~gd~i~vi~s~~~~e~~eg~~-mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 401 YKVKALHDYAAQDTD--ELSFEAGDVILVIPSDNPEEQDEGWL-MGVKESDWNGLFP 454 (460)
T ss_pred cceeccccccccccc--cccccCCCEEEEecCCCccchhhHHH-hhhccccccccee
Confidence 358999999987777 99999999999998654 36888876 5544444455543
No 45
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=96.45 E-value=0.0081 Score=36.67 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=31.5
Q ss_pred ceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCce
Q psy11791 23 YVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60 (143)
Q Consensus 23 eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv 60 (143)
--.+..|+.+.++...+.+|.+++...|..||||..++
T Consensus 24 ~~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 24 IGTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred eEEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 34578999999998865589999987799999987665
No 46
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=96.32 E-value=0.00075 Score=43.81 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCcccCCCccccccccCcCCCCCCceE---EEec---eecccCCCceec-----cCc--c--cccccCCCCCCCCcc
Q psy11791 71 RNNVENINPTMEKTRSYSEGNDKGGFV---SVKD---RAISIDNNSSIK-----QKP--K--VAKRTIFPVIPSYEN 132 (143)
Q Consensus 71 ~w~~~~i~r~~~e~ll~~~g~~~G~F~---sv~~---~~~~~~~~~~vk-----~~~--~--l~e~~~f~~ip~li~ 132 (143)
.||.+.|+|.+|+++|...+ .|.|| |-.. -++.+--.+.++ .+. . +.....|++|++||+
T Consensus 2 ~w~~g~i~r~~Ae~lL~~~~--~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~ 76 (84)
T smart00252 2 PWYHGFISREEAEKLLKNEG--DGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVE 76 (84)
T ss_pred CeecccCCHHHHHHHHhcCC--CcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHH
Confidence 49999999999999998754 59998 1110 011110011221 222 1 555789999999885
No 47
>KOG3725|consensus
Probab=96.30 E-value=0.0013 Score=52.31 Aligned_cols=54 Identities=26% Similarity=0.437 Sum_probs=44.0
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEec--CCCCceEEEeCCCceEEEcCCceee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKK--TNKDWWQVIRSSGKPFYVPASYVEV 62 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~--~~~~WW~~r~~~g~~G~vPsnyv~~ 62 (143)
..++++|||++... +||++-..++|.|..- .+.+|..+++ +++.|-+|..|++.
T Consensus 318 rkArVlyDYdAa~s--~ElslladeiitVyslpGMD~dwlmgEr-GnkkGKvPvtYlEL 373 (375)
T KOG3725|consen 318 RKARVLYDYDAALS--QELSLLADEIITVYSLPGMDADWLMGER-GNKKGKVPVTYLEL 373 (375)
T ss_pred cceeeeecccccch--hhhhhhhcceEEEEecCCCChHHhhhhh-cCCCCCcchhHHHh
Confidence 45789999885544 4999999999988654 3678999987 77889999999864
No 48
>KOG4429|consensus
Probab=96.29 E-value=0.0012 Score=53.20 Aligned_cols=54 Identities=15% Similarity=0.033 Sum_probs=47.1
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~ 63 (143)
.|.|+|.|.++.++ +|...+|++..+-++...+||.++. .|.-|.+|+.||++.
T Consensus 365 lcdafYSfqarqdd--el~~e~gditif~Ekkeeg~~f~rl-~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 365 LCDAFYSFQARQDD--ELGGEIGDITIFDEKKEEGPTFCRL-LGDFEHFHAAEIEEA 418 (421)
T ss_pred Hhhhhhcccccccc--ccCCcccceeeecCcccCCCceeee-ccccCCCcHHHHHHh
Confidence 47899999988888 9999999998777777889999987 888899999998765
No 49
>KOG3775|consensus
Probab=96.16 E-value=0.0028 Score=52.55 Aligned_cols=60 Identities=17% Similarity=0.331 Sum_probs=49.3
Q ss_pred CCceEEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeC-CCceEEEcCCceeeee
Q psy11791 3 LQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRS-SGKPFYVPASYVEVYK 64 (143)
Q Consensus 3 ~~~~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~-~g~~G~vPsnyv~~~~ 64 (143)
++...-+|++.|-.+..+ ||-+..||-+.|-...++.|..+-+. .|+.|.||+.|+.++.
T Consensus 260 ~qe~THR~~~rFvPRHpD--ELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 260 EQEQTHRAVFRFVPRHPD--ELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD 320 (482)
T ss_pred hhchhhhhhhhccCCCcc--eeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence 344455788888877777 99999999998888878899998764 5899999999998865
No 50
>KOG1451|consensus
Probab=96.06 E-value=0.0057 Score=53.43 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=39.8
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecC-CCCceEEEeCCCceEEEcCCceee
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEV 62 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~-~~~WW~~r~~~g~~G~vPsnyv~~ 62 (143)
+.++|. ..+....+++|..|.++.-+..+ .++|..++. +|++|+||+|||+.
T Consensus 759 ~k~lyA--c~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtL-nGktglip~nyve~ 811 (812)
T KOG1451|consen 759 VKTLYA--CTADHHSELSFEPGTIFTNVYESNEDGWLVGTL-NGKTGLIPSNYVEP 811 (812)
T ss_pred ccceec--cCCCCcccccccCcceeeeecccCCCCceeeec-CCCcccCcccccCc
Confidence 456666 44555569999999999877755 556766665 99999999999975
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.96 E-value=0.0098 Score=45.72 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=35.2
Q ss_pred eecCCCCEEEEEecCC-CCceEEEeCCCceEEEcCCceeeee
Q psy11791 24 VRIQEGEKLFLIKKTN-KDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 24 Ls~~~Gd~l~vl~~~~-~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
-++..|+.++|+...+ .+|.+++..+|++|||++.|+...+
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p 89 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTP 89 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCc
Confidence 3577999999998764 5899999889999999999998654
No 52
>KOG0199|consensus
Probab=95.70 E-value=0.015 Score=52.20 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=42.2
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecCCC-CceEEEeC-CCceEEEcCCceee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK-DWWQVIRS-SGKPFYVPASYVEV 62 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~-~WW~~r~~-~g~~G~vPsnyv~~ 62 (143)
..+++.||+. ..+ .|.|++||.|.||+.+.. -||++.+. +++.|.||.+-|..
T Consensus 377 ~~a~~~~d~~--ep~--aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 377 AVARETYDSI--EPG--ALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred ceeeeecccc--CCC--ceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 3456777744 666 999999999999998754 69999764 56999999998883
No 53
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=95.69 E-value=0.0038 Score=40.97 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=21.4
Q ss_pred CCcccCCCccccccccCcCCCCCCceE
Q psy11791 71 RNNVENINPTMEKTRSYSEGNDKGGFV 97 (143)
Q Consensus 71 ~w~~~~i~r~~~e~ll~~~g~~~G~F~ 97 (143)
.||.+.|+|.+|+++|.+ ...|.||
T Consensus 1 ~w~~g~i~r~~Ae~~L~~--~~~G~FL 25 (94)
T cd00173 1 PWYHGPISREEAEELLKK--KPDGTFL 25 (94)
T ss_pred CccccCCCHHHHHHHHhc--CCCceEE
Confidence 499999999999999987 3448888
No 54
>KOG3565|consensus
Probab=95.66 E-value=0.0026 Score=56.34 Aligned_cols=56 Identities=32% Similarity=0.546 Sum_probs=47.5
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecC-CCCceEEE-eCCCceEEEcCCceeee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVI-RSSGKPFYVPASYVEVY 63 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~-~~~WW~~r-~~~g~~G~vPsnyv~~~ 63 (143)
..+.|+|.|++...+ ++++.+|+++.+++.+ +++|=++| ..+|..|++|.+|+...
T Consensus 579 ~~~~a~~~~~~~s~~--~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 579 RTSKALYAFEGQSEG--TISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred cceecccCcCCCCCC--ccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 457889998877777 9999999999999887 66888888 45789999999999754
No 55
>KOG4792|consensus
Probab=95.32 E-value=0.023 Score=44.45 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=45.3
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
+++++.+--..+=+...|.+.+|+++.|....-.+-|.++. +|+.|.||-.||+...
T Consensus 229 ~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegEl-nGk~G~fPfThvrf~d 285 (293)
T KOG4792|consen 229 YARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGEL-NGKIGHFPFTHVRFTD 285 (293)
T ss_pred heeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeee-cCccccccceeEEeec
Confidence 34555554334445568999999999999988778999998 9999999999998754
No 56
>KOG0040|consensus
Probab=95.10 E-value=0.00032 Score=66.16 Aligned_cols=55 Identities=33% Similarity=0.674 Sum_probs=47.5
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
.+.|+|||...+.. +.+.++||+++++...+.+||+++. ..+.|++|+.||+.+.
T Consensus 970 ~v~alyd~q~kSpr--ev~mKkgDvltll~s~nkdwwkve~-~d~qg~vpa~yvk~~~ 1024 (2399)
T KOG0040|consen 970 CVLALYDYQEKSPR--EVTMKKGDVLTLLNSINKDWWKVEV-NDRQGFVPAAYVKRLD 1024 (2399)
T ss_pred HHHHHHHHHhcCHH--HHHHhhhhHHHHHhhcccccccchh-hhhcCcchHHHHHHhc
Confidence 35789998755555 9999999999999988999999998 7789999999998764
No 57
>KOG3632|consensus
Probab=93.12 E-value=0.25 Score=45.80 Aligned_cols=60 Identities=13% Similarity=0.314 Sum_probs=47.7
Q ss_pred EEEEeeccCC---C-CCCCCceecCCCCEEEEEecC-CCCceEEEeCCCceEEEcCCceeeeecc
Q psy11791 7 TLKVLYDFDY---S-TKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEVYKKL 66 (143)
Q Consensus 7 ~~~alydf~~---~-~~~~~eLs~~~Gd~l~vl~~~-~~~WW~~r~~~g~~G~vPsnyv~~~~~~ 66 (143)
.+.|.|.|.. . ...+.+|.+..|+.|+|.... .++.+.+....|+.|.+|+|||+.....
T Consensus 449 ~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d~ 513 (1335)
T KOG3632|consen 449 PFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTDT 513 (1335)
T ss_pred eEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEeccc
Confidence 4688898754 1 122368999999999999875 4578899988999999999999987643
No 58
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=92.67 E-value=0.24 Score=29.57 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=29.5
Q ss_pred ceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCce
Q psy11791 23 YVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60 (143)
Q Consensus 23 eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv 60 (143)
-..+.+|..+.|+.. ..+|.+++ .+|..|||+.+.|
T Consensus 18 v~~l~~g~~v~v~~~-~~~W~~V~-~~g~~GWv~~~~l 53 (55)
T PF06347_consen 18 VARLEPGVPVRVIEC-RGGWCKVR-ADGRTGWVHKSLL 53 (55)
T ss_pred EEEECCCCEEEEEEc-cCCeEEEE-ECCeEEeEEeeec
Confidence 456778999988855 67899999 6999999988765
No 59
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=92.34 E-value=0.24 Score=38.07 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=35.3
Q ss_pred ecCCCCEEEEEecCCC-CceEEEeCCCceEEEcCCceeeee
Q psy11791 25 RIQEGEKLFLIKKTNK-DWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 25 s~~~Gd~l~vl~~~~~-~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
++++|+.+.|+..++. +|-+++...|+.|+||+.++....
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~ 89 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEP 89 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcccc
Confidence 6889999999998755 799999999999999999888754
No 60
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=91.51 E-value=0.35 Score=41.67 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=34.0
Q ss_pred eecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeee
Q psy11791 24 VRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (143)
Q Consensus 24 Ls~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~ 63 (143)
=++.+|+.+.|+...+.+|++++..+|++|||-+.||...
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 3678999999986446689999987799999999999864
No 61
>KOG3812|consensus
Probab=88.29 E-value=0.28 Score=40.67 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=37.3
Q ss_pred EEEeeccCCCCCC-----CCceecCCCCEEEEEecCCCCceEEEeC--CCceEEEcC
Q psy11791 8 LKVLYDFDYSTKD-----GKYVRIQEGEKLFLIKKTNKDWWQVIRS--SGKPFYVPA 57 (143)
Q Consensus 8 ~~alydf~~~~~~-----~~eLs~~~Gd~l~vl~~~~~~WW~~r~~--~g~~G~vPs 57 (143)
|++.-+|+..-++ ...++|...|.|-|-++-+.+||-+|.. .+..||||+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 4556676654443 2467899999999988889999999853 347799998
No 62
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=77.26 E-value=3.4 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.761 Sum_probs=19.6
Q ss_pred ecCCCCEEEEEecCCCCceEEEe
Q psy11791 25 RIQEGEKLFLIKKTNKDWWQVIR 47 (143)
Q Consensus 25 s~~~Gd~l~vl~~~~~~WW~~r~ 47 (143)
.|.+|+.+.+..+++..||.+.-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 47899999999877888999875
No 63
>KOG0790|consensus
Probab=73.25 E-value=1.4 Score=37.86 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=24.0
Q ss_pred CCcccCCCccccccccCcCCCCCCceE
Q psy11791 71 RNNVENINPTMEKTRSYSEGNDKGGFV 97 (143)
Q Consensus 71 ~w~~~~i~r~~~e~ll~~~g~~~G~F~ 97 (143)
+|+.++++-.+||.||+++|+. |.|+
T Consensus 111 rWfHG~LsgkeAekLl~ekgk~-gsfL 136 (600)
T KOG0790|consen 111 RWFHGHLSGKEAEKLLQEKGKH-GSFL 136 (600)
T ss_pred hhhccCCCchhHHHHHHhcCCC-ccEE
Confidence 7999999999999999999986 8887
No 64
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=72.86 E-value=9 Score=23.20 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=22.9
Q ss_pred ceecCCCCEEEEEecC-CCCceEEEeCCCceEEEcC
Q psy11791 23 YVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPA 57 (143)
Q Consensus 23 eLs~~~Gd~l~vl~~~-~~~WW~~r~~~g~~G~vPs 57 (143)
+-.+..|+-+.|+..+ |..|..++. ....|+|++
T Consensus 20 ~s~l~~gtPv~i~H~S~D~~W~fV~t-~~~~GWV~s 54 (54)
T PF12913_consen 20 NSALHPGTPVYILHTSRDGAWAFVQT-PFYSGWVKS 54 (54)
T ss_dssp EEEE-TT-EEEEEEE-TTSSEEEEE--SS-EEEEEG
T ss_pred hcccCCCCCEEEEEECCCCCEEEEec-CCeeEeeeC
Confidence 5577899999999887 557888876 567788864
No 65
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=72.63 E-value=5 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.732 Sum_probs=18.0
Q ss_pred ceecCCCCEEEEEecC------CCCceEEEe
Q psy11791 23 YVRIQEGEKLFLIKKT------NKDWWQVIR 47 (143)
Q Consensus 23 eLs~~~Gd~l~vl~~~------~~~WW~~r~ 47 (143)
=|+++.|+.+.|-... +.+||.+.-
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 3788999998665443 458999874
No 66
>KOG0708|consensus
Probab=64.16 E-value=2 Score=35.76 Aligned_cols=57 Identities=23% Similarity=0.453 Sum_probs=40.9
Q ss_pred ceEEEEeeccCCCCCC---CCceecCCCCEEEEEecCCCCceEEEeCCC-----ceEEEcCCcee
Q psy11791 5 DVTLKVLYDFDYSTKD---GKYVRIQEGEKLFLIKKTNKDWWQVIRSSG-----KPFYVPASYVE 61 (143)
Q Consensus 5 ~~~~~alydf~~~~~~---~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g-----~~G~vPsnyv~ 61 (143)
..++.+++||+..... ...++|..|+++.++...+..||.+|...+ ..|.+|+--..
T Consensus 66 ~~~v~~~~d~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~ 130 (359)
T KOG0708|consen 66 CLYVDALFDYDLDRGSPGYSRAQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRR 130 (359)
T ss_pred eeEeeccccccccCCCCCcchhhhhhhhhhhhccccccHHHHHhhccCCCccccccccccccccc
Confidence 3568889888654331 145788899999999998999999987443 45777764443
No 67
>KOG3705|consensus
Probab=62.50 E-value=9.1 Score=32.73 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=36.1
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEe-CCCceEEEcCCceeee
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEVY 63 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~-~~g~~G~vPsnyv~~~ 63 (143)
++++++..++..+ |+.++.||.+-|-...=++.=++.+ ..+++|+||+-=|++.
T Consensus 512 ~ivi~aH~prt~~--ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvrek 566 (580)
T KOG3705|consen 512 VIVIEAHIPRTNK--EIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVREK 566 (580)
T ss_pred eEEEEecCCCccc--ccCcccCCeeeecccccccccccccccccccCCCccceeeee
Confidence 5778887766666 9999999999776432111122322 2458999999777653
No 68
>KOG3580|consensus
Probab=57.36 E-value=20 Score=32.38 Aligned_cols=55 Identities=9% Similarity=0.204 Sum_probs=37.9
Q ss_pred eEEEEeeccCCCCCCCCceecCCCCEEEEEecC----CCCceEEEeCCC----ceEEEcCCceee
Q psy11791 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT----NKDWWQVIRSSG----KPFYVPASYVEV 62 (143)
Q Consensus 6 ~~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~----~~~WW~~r~~~g----~~G~vPsnyv~~ 62 (143)
.+.+..|.++ ...++.|.|.+|+++.+++.- ..+|.-+|..+. ..|+||...-.+
T Consensus 505 FyIRtHFE~E--ke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNksRAE 567 (1027)
T KOG3580|consen 505 FYIRTHFECE--KETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKSRAE 567 (1027)
T ss_pred eEEeeeeeec--CCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCccHHH
Confidence 3455555544 555669999999999998774 235777775332 569999755443
No 69
>PF07425 Pardaxin: Pardaxin; InterPro: IPR009990 This family consists of several Pardaxin proteins. Pardaxin, a 33-amino-acid pore-forming polypeptide toxin isolated from the Red Sea Moses sole Pardachirus marmoratus, has a helix-hinge-helix structure. This is a common structural motif found both in antibacterial peptides that can act selectively on bacterial membranes (e.g., cecropin), and in cytotoxic peptides that can lyse both mammalian and bacterial cells (e.g., melittin). Pardaxin possesses a high antibacterial activity with a significantly reduced haemolytic activity towards human red blood cells compared with melittin []. Pardaxin has also been found to have a shark repellent action [].; GO: 0005576 extracellular region; PDB: 1XC0_A 2KNS_A.
Probab=49.49 E-value=3.1 Score=21.92 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.1
Q ss_pred CCCCCCCCccCCCCcc
Q psy11791 123 IFPVIPSYENIPTDNE 138 (143)
Q Consensus 123 ~f~~ip~li~~~~~~~ 138 (143)
.|..||++|++|.-.+
T Consensus 2 ffalipkiissplfkt 17 (33)
T PF07425_consen 2 FFALIPKIISSPLFKT 17 (33)
T ss_dssp TTTCHHHHCCTTTCHH
T ss_pred hhhhhhHHHccHHHHH
Confidence 5889999999997544
No 70
>KOG1930|consensus
Probab=48.78 E-value=6.5 Score=33.51 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.0
Q ss_pred CCcccCCCccccccccCcCCCCCCceE
Q psy11791 71 RNNVENINPTMEKTRSYSEGNDKGGFV 97 (143)
Q Consensus 71 ~w~~~~i~r~~~e~ll~~~g~~~G~F~ 97 (143)
-||-.+|+|.||..+|+. ++.|+|+
T Consensus 213 yWYKP~isREQAIalLrd--kePGtFv 237 (483)
T KOG1930|consen 213 YWYKPNISREQAIALLRD--KEPGTFV 237 (483)
T ss_pred cccCCCCCHHHHHHHhhc--CCCCeEE
Confidence 599999999999999964 5679999
No 71
>KOG1264|consensus
Probab=46.49 E-value=11 Score=35.15 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=24.2
Q ss_pred CCcccCCCccccccccCcCCCCCCceE
Q psy11791 71 RNNVENINPTMEKTRSYSEGNDKGGFV 97 (143)
Q Consensus 71 ~w~~~~i~r~~~e~ll~~~g~~~G~F~ 97 (143)
.||..+++|.+||+.|+.-..+ |+|+
T Consensus 649 ~W~~as~treqAE~mL~rvp~D-GaFL 674 (1267)
T KOG1264|consen 649 PWYHASLTREQAEDMLMRVPRD-GAFL 674 (1267)
T ss_pred ccccccccHHHHHHHHhhCccC-cceE
Confidence 6999999999999999888877 9999
No 72
>KOG4384|consensus
Probab=42.98 E-value=15 Score=30.65 Aligned_cols=56 Identities=25% Similarity=0.311 Sum_probs=46.1
Q ss_pred EEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCceeeee
Q psy11791 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (143)
Q Consensus 8 ~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~~~~ 64 (143)
+++.-+|....-+.++|-+++|+++.++.+..-+-|.+-. .++.|.|+--||..+.
T Consensus 139 ~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~-~~kv~~f~~~~v~~~s 194 (361)
T KOG4384|consen 139 ARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLL-NNKVGSFKFIYVDVIS 194 (361)
T ss_pred ccccccCCCCcccccchhhcccchhhccccCccccccccc-cCcccccccceecccc
Confidence 4556677777777779999999999999998777788766 8899999999998764
No 73
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=37.70 E-value=45 Score=29.52 Aligned_cols=38 Identities=18% Similarity=0.471 Sum_probs=30.7
Q ss_pred CCCEEEEEecC-----CCCceEEEeCCCceEEEcCCceeeeec
Q psy11791 28 EGEKLFLIKKT-----NKDWWQVIRSSGKPFYVPASYVEVYKK 65 (143)
Q Consensus 28 ~Gd~l~vl~~~-----~~~WW~~r~~~g~~G~vPsnyv~~~~~ 65 (143)
=|+.+.|.++. +.+|.++...+|.+|||-..||+....
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (549)
T PRK13545 374 FGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFKS 416 (549)
T ss_pred cCceEEEcccccccccCcceEEEEecCCccceeeeeeeeeccc
Confidence 47888776653 347999999999999999999998753
No 74
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.74 E-value=21 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.412 Sum_probs=29.6
Q ss_pred eecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCcee
Q psy11791 24 VRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61 (143)
Q Consensus 24 Ls~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~ 61 (143)
+-+++|.-+.|+.+ -++|-+.|+.+|.+|+|-.+-+.
T Consensus 59 ~y~k~GlPVEIvqE-y~~WRrirDadG~egWv~qslls 95 (171)
T COG3807 59 VYLKKGLPVEIVQE-YDNWRRIRDADGTEGWVHQSLLS 95 (171)
T ss_pred eeeccCCceehhhh-hhhhhheeCCCCCceeeeeeccc
Confidence 45678888988877 45799999999999999765554
No 75
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=28.76 E-value=59 Score=19.99 Aligned_cols=22 Identities=9% Similarity=0.433 Sum_probs=13.5
Q ss_pred cCCCCEEEEEecCCC---CceEEEe
Q psy11791 26 IQEGEKLFLIKKTNK---DWWQVIR 47 (143)
Q Consensus 26 ~~~Gd~l~vl~~~~~---~WW~~r~ 47 (143)
|++|+.+.|....+. .|+.+.-
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V 25 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATV 25 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEE
Confidence 689999999877633 4888764
No 76
>PF11347 DUF3148: Protein of unknown function (DUF3148); InterPro: IPR021495 This family of proteins has no known function.
Probab=25.51 E-value=1.7e+02 Score=18.29 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=22.9
Q ss_pred cCCCCEEEEEecCCCCceEEEeCCCceEEEcCCc
Q psy11791 26 IQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASY 59 (143)
Q Consensus 26 ~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsny 59 (143)
+..||.=.|+.....+-|-+|-..| ..++++.|
T Consensus 30 v~~ge~G~i~~rrp~~~w~VRf~~G-tfLid~~y 62 (63)
T PF11347_consen 30 VKIGEVGRIVDRRPGDYWAVRFRRG-TFLIDSKY 62 (63)
T ss_pred cccCCcEEEEEecCCCEEEEEEece-eEeecccc
Confidence 4567777888888889999997443 34445544
No 77
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=25.14 E-value=1.2e+02 Score=17.29 Aligned_cols=22 Identities=14% Similarity=0.367 Sum_probs=16.2
Q ss_pred ecCCCCEEEEEecCCCCceEEEe
Q psy11791 25 RIQEGEKLFLIKKTNKDWWQVIR 47 (143)
Q Consensus 25 s~~~Gd~l~vl~~~~~~WW~~r~ 47 (143)
.++.|+.+.+.- .+..|++++-
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I 23 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARI 23 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEE
Confidence 367788877766 6778999875
No 78
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.49 E-value=1.8e+02 Score=19.36 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=30.6
Q ss_pred EEEEeeccCCCCCCCCceecCCCCEEEEEecCCCCceEEEeCCCceEEEcCCcee
Q psy11791 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61 (143)
Q Consensus 7 ~~~alydf~~~~~~~~eLs~~~Gd~l~vl~~~~~~WW~~r~~~g~~G~vPsnyv~ 61 (143)
++.+.|.|--...+ ++.+..|-.-..+.. +++| +.- ..|....||.|.-=
T Consensus 30 m~~geytFgTa~~E--~Mtvv~Gal~v~lpg-s~dW-q~~-~~Ge~F~VpgnS~F 79 (94)
T COG3123 30 MAPGEYTFGTAAPE--EMTVVSGALTVLLPG-SDDW-QVY-TAGEVFNVPGNSEF 79 (94)
T ss_pred EeceeEEeccCCce--EEEEEeeEEEEEcCC-Cccc-EEe-cCCceEEcCCCCeE
Confidence 44556776533344 777777776544543 4455 443 37888999987543
No 79
>KOG0194|consensus
Probab=20.82 E-value=35 Score=29.62 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=19.0
Q ss_pred CCcccCCCccccccccCcCCCCCCceE
Q psy11791 71 RNNVENINPTMEKTRSYSEGNDKGGFV 97 (143)
Q Consensus 71 ~w~~~~i~r~~~e~ll~~~g~~~G~F~ 97 (143)
.||.+-+.|..++++|... |.||
T Consensus 50 ~~yHG~l~red~~~lL~~~----GDfL 72 (474)
T KOG0194|consen 50 PYYHGLLPREDAEKLLKND----GDFL 72 (474)
T ss_pred ccccccccHhHHHHHhCCC----CceE
Confidence 6999999999999998653 5566
Done!