BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11793
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
          Length = 372

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 51  RTKSLKTPSNLFIFNQALLDLCM-MVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
           +TKSL+TP+N+FI N A  D    +VN  P++ ++ F ++ I     C +YG  G I GF
Sbjct: 60  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 119

Query: 109 GSAMNNAVIAYDRY 122
            S M  A+I+ DRY
Sbjct: 120 MSIMTMAMISIDRY 133



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 6   PMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 50
           P++ ++ F ++ I     C +YG  G I GF S M  A+I+ DRY
Sbjct: 89  PLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRY 133


>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
 pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
 pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
           Rhodopsin
 pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
           Rhodopsin
 pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
 pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
          Length = 448

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 51  RTKSLKTPSNLFIFNQALLDLCM-MVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
           +TKSL+TP+N+FI N A  D    +VN  P++ ++ F ++ I     C +YG  G I GF
Sbjct: 61  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 120

Query: 109 GSAMNNAVIAYDRY 122
            S M  A+I+ DRY
Sbjct: 121 MSIMTMAMISIDRY 134



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 6   PMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 50
           P++ ++ F ++ I     C +YG  G I GF S M  A+I+ DRY
Sbjct: 90  PLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRY 134


>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
           PEPTIDE Mimetic
 pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
           PEPTIDE Mimetic
          Length = 434

 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 18/97 (18%)

Query: 26  IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSF 85
           I GL+ ++   G  + N ++ Y   R   +KT +N++IFN AL D  +++ +P       
Sbjct: 128 IVGLYLAVC-VGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPF------ 180

Query: 86  YQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
                    G DI  L G    FG+A+   VIA D Y
Sbjct: 181 --------QGTDI--LLG-FWPFGNALCKTVIAIDYY 206


>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
           D282c Rhodopsin Mutant With Bound Galphact Peptide
          Length = 349

 Score = 36.6 bits (83), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG 100
           N +  Y   + K L+TP N  + N A+ DL M+       +  S +   +   TGC++ G
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQG 115

Query: 101 LFGSISGFGSAMNNAVIAYDRY 122
            F ++ G  +  +  V+A +RY
Sbjct: 116 FFATLGGEIALWSLVVLAIERY 137



 Score = 25.0 bits (53), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 22  TGCDIYGLFGSISGFGSAMNNAVIAYDRY 50
           TGC++ G F ++ G  +  +  V+A +RY
Sbjct: 109 TGCNLQGFFATLGGEIALWSLVVLAIERY 137


>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
           Expressed In Mammalian Cells
 pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
           Expressed In Mammalian Cells
          Length = 349

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG 100
           N +  Y   + K L+TP N  + N A+ DL M+       +  S +   +   TGC++ G
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115

Query: 101 LFGSISGFGSAMNNAVIAYDRY 122
            F ++ G  +  +  V+A +RY
Sbjct: 116 FFATLGGEIALWSLVVLAIERY 137


>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
 pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
 pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
 pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
 pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
 pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
 pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
           Rhodopsin
 pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
           Rhodopsin
 pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
           Rhodopsin
 pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
           Ground-State Rhodopsin
 pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
 pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
 pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
 pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
 pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
 pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
 pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
 pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
 pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
 pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
           Resolution
 pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
           Resolution
 pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
           Resolution
 pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
           Resolution
          Length = 349

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG 100
           N +  Y   + K L+TP N  + N A+ DL M+       +  S +   +   TGC++ G
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115

Query: 101 LFGSISGFGSAMNNAVIAYDRY 122
            F ++ G  +  +  V+A +RY
Sbjct: 116 FFATLGGEIALWSLVVLAIERY 137


>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
           Crystal Form
          Length = 348

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG 100
           N +  Y   + K L+TP N  + N A+ DL M+       +  S +   +   TGC++ G
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 114

Query: 101 LFGSISGFGSAMNNAVIAYDRY 122
            F ++ G  +  +  V+A +RY
Sbjct: 115 FFATLGGEIALWSLVVLAIERY 136


>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
 pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
 pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
           Receptor Rhodopsin In Its Ligand-Free State
 pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
           Receptor Rhodopsin In Its Ligand-Free State
 pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
           Crystal Form
 pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
 pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
 pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
           Opsin In Complex With A C-terminal Peptide Derived From
           The Galpha Subunit Of Transducin
 pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
           C-Terminal Peptide Derived From The Galpha Subunit Of
           Transducin
 pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
          Length = 348

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG 100
           N +  Y   + K L+TP N  + N A+ DL M+       +  S +   +   TGC++ G
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 114

Query: 101 LFGSISGFGSAMNNAVIAYDRY 122
            F ++ G  +  +  V+A +RY
Sbjct: 115 FFATLGGEIALWSLVVLAIERY 136


>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
           Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
           A Peptide Resembling The C-Terminus Of The
           Galpha-Protein Subunit (Gact)
          Length = 349

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG 100
           N +  Y   + K L+TP N  + N A+ DL M+       +  S +   +   TGC++ G
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115

Query: 101 LFGSISGFGSAMNNAVIAYDRY 122
            F ++ G  +  +  V+A +RY
Sbjct: 116 FFATLGGEIALWSLVVLAIERY 137


>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
          Length = 479

 Score = 32.3 bits (72), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 53  KSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSA 111
           K LKT +N F+ + A  DL + +++M +        R       CD++     ++   S 
Sbjct: 41  KQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASV 100

Query: 112 MNNAVIAYDRY 122
           MN  VI++DRY
Sbjct: 101 MNLLVISFDRY 111


>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
          Naltrindole
          Length = 461

 Score = 30.8 bits (68), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 26 IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMP 78
          I  L+ ++   G  + N ++ +   R   LKT +N++IFN AL D      +P
Sbjct: 17 ITALYSAVCAVG-LLGNVLVMFGIVRYTKLKTATNIYIFNLALADALATSTLP 68


>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
           Receptor Bound To An Antagonist
          Length = 467

 Score = 30.4 bits (67), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 53  KSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSISGFG 109
           + L+T +N F+F+ A  DL  ++ +  + + + Y  +  W  G   CD++     +    
Sbjct: 52  RHLQTVNNYFLFSLACADL--IIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNA 109

Query: 110 SAMNNAVIAYDRY 122
           S MN  +I++DRY
Sbjct: 110 SVMNLLIISFDRY 122


>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
          With Jdtic
 pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
          With Jdtic
          Length = 480

 Score = 29.6 bits (65), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 42 NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMP 78
          N+++ +   R   +KT +N++IFN AL D  +   MP
Sbjct: 40 NSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMP 76


>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
          Morphinan Antagonist
          Length = 464

 Score = 29.6 bits (65), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 26 IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVN 83
          + GLFG          N ++ Y   R   +KT +N++IFN AL D      +P   VN
Sbjct: 29 VVGLFG----------NFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVN 76


>pdb|2X0B|B Chain B, Crystal Structure Of Human Angiotensinogen Complexed With
           Renin
 pdb|2X0B|D Chain D, Crystal Structure Of Human Angiotensinogen Complexed With
           Renin
 pdb|2X0B|F Chain F, Crystal Structure Of Human Angiotensinogen Complexed With
           Renin
 pdb|2X0B|H Chain H, Crystal Structure Of Human Angiotensinogen Complexed With
           Renin
          Length = 452

 Score = 28.5 bits (62), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 10  VNSFYQRVIGWETGCDIYG 28
           ++ F Q V GW+TGC + G
Sbjct: 218 IDRFMQAVTGWKTGCSLMG 236



 Score = 28.5 bits (62), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 82  VNSFYQRVIGWETGCDIYG 100
           ++ F Q V GW+TGC + G
Sbjct: 218 IDRFMQAVTGWKTGCSLMG 236


>pdb|2WXW|A Chain A, Crystal Structure Of Human Angiotensinogen
          Length = 453

 Score = 28.5 bits (62), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 10  VNSFYQRVIGWETGCDIYG 28
           ++ F Q V GW+TGC + G
Sbjct: 219 IDRFMQAVTGWKTGCSLMG 237



 Score = 28.5 bits (62), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 82  VNSFYQRVIGWETGCDIYG 100
           ++ F Q V GW+TGC + G
Sbjct: 219 IDRFMQAVTGWKTGCSLMG 237


>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
           With Nk1r
 pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
           LIGAND FOR Nk1r
 pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
           LIGAND For Nk1r
          Length = 364

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 53  KSLKTPSNLFIFNQALLDLCM-----MVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISG 107
           K ++T +N F+ N A  +  M     +VN    V N +Y  +      C  +  F   + 
Sbjct: 61  KRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFY----CKFHNFFPIAAV 116

Query: 108 FGSAMNNAVIAYDRY 122
           F S  +   +A+DRY
Sbjct: 117 FASIYSMTAVAFDRY 131


>pdb|1KMP|A Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
           Complexed With Ferric Citrate
          Length = 774

 Score = 26.6 bits (57), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 4   NMPMLVVNSFYQRVIGWETGCDIYGLFGSI--SGFGSAMNNAVIAYDRYRTKSLKT 57
           N P+  +N  Y     W    +  G FG++  S  G A+ +  +  ++ RT  L T
Sbjct: 522 NAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGT 577


>pdb|1PNZ|A Chain A, Crystal Structure Of Ferric Citrate Transporter Feca In
           The Unliganded Form
 pdb|1PO0|A Chain A, Crystal Structure Of Ferric Citrate Transporter Feca In
           Complex With Iron-Free Citrate
 pdb|1PO3|A Chain A, Crystal Structure Of Ferric Citrate Transporter Feca In
           Complex With Ferric Citrate
 pdb|1PO3|B Chain B, Crystal Structure Of Ferric Citrate Transporter Feca In
           Complex With Ferric Citrate
          Length = 751

 Score = 26.2 bits (56), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 4   NMPMLVVNSFYQRVIGWETGCDIYGLFGSI--SGFGSAMNNAVIAYDRYRTKSLKT 57
           N P+  +N  Y     W    +  G FG++  S  G A+ +  +  ++ RT  L T
Sbjct: 499 NAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGT 554


>pdb|1KMO|A Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
          Length = 774

 Score = 26.2 bits (56), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 4   NMPMLVVNSFYQRVIGWETGCDIYGLFGSI--SGFGSAMNNAVIAYDRYRTKSLKT 57
           N P+  +N  Y     W    +  G FG++  S  G A+ +  +  ++ RT  L T
Sbjct: 522 NAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGT 577


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,512,139
Number of Sequences: 62578
Number of extensions: 123703
Number of successful extensions: 648
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 37
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)