Query psy11793
Match_columns 123
No_of_seqs 115 out of 1481
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 19:07:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03234 DNA packaging protein 99.8 1.4E-19 3E-24 132.5 11.7 102 21-123 29-132 (338)
2 KOG4219|consensus 99.8 2.9E-19 6.3E-24 130.6 7.0 108 16-123 27-135 (423)
3 PHA02834 chemokine receptor-li 99.7 9.4E-17 2E-21 116.7 11.9 99 22-123 26-125 (323)
4 PHA02638 CC chemokine receptor 99.7 1.3E-15 2.8E-20 114.3 11.7 99 23-123 97-195 (417)
5 KOG4220|consensus 99.7 1.3E-17 2.9E-22 122.4 -0.2 102 22-123 28-130 (503)
6 PHA03235 DNA packaging protein 99.6 3.2E-15 7E-20 111.9 10.8 100 21-123 29-132 (409)
7 PHA03087 G protein-coupled che 99.6 6.2E-15 1.3E-19 107.3 10.2 102 21-123 37-138 (335)
8 PF00001 7tm_1: 7 transmembran 99.5 3.6E-14 7.7E-19 97.6 8.3 83 41-123 1-84 (257)
9 PF10320 7TM_GPCR_Srsx: Serpen 99.4 7.5E-13 1.6E-17 93.7 5.1 86 36-123 2-88 (257)
10 KOG2087|consensus 98.7 1.6E-08 3.5E-13 73.8 5.2 89 34-123 34-131 (363)
11 PF05462 Dicty_CAR: Slime mold 97.9 0.00016 3.5E-09 52.6 10.1 96 23-122 5-101 (303)
12 PF11710 Git3: G protein-coupl 97.9 0.00028 6.1E-09 48.4 9.7 70 53-122 30-100 (201)
13 PF10328 7TM_GPCR_Srx: Serpent 97.8 0.00027 5.9E-09 50.4 9.3 85 35-123 4-94 (274)
14 PF05296 TAS2R: Mammalian tast 97.7 0.0014 3.1E-08 47.6 12.1 96 24-120 6-106 (303)
15 PF10324 7TM_GPCR_Srw: Serpent 97.5 0.0013 2.8E-08 47.7 8.6 85 35-123 7-105 (318)
16 PF10321 7TM_GPCR_Srt: Serpent 97.3 0.0055 1.2E-07 44.9 10.6 100 17-122 24-132 (313)
17 PF03402 V1R: Vomeronasal orga 96.6 0.0057 1.2E-07 43.8 5.5 63 56-120 8-72 (265)
18 PF10317 7TM_GPCR_Srd: Serpent 95.6 0.12 2.7E-06 37.2 8.3 92 30-122 4-108 (292)
19 PF10292 7TM_GPCR_Srab: Serpen 95.5 0.41 8.8E-06 35.1 10.6 94 29-122 21-122 (324)
20 PF10316 7TM_GPCR_Srbc: Serpen 94.2 0.89 1.9E-05 32.8 9.3 98 25-122 6-107 (273)
21 PF00002 7tm_2: 7 transmembran 93.5 0.05 1.1E-06 37.8 1.9 87 35-122 11-98 (242)
22 PF10323 7TM_GPCR_Srv: Serpent 89.7 3.9 8.5E-05 29.4 8.2 69 55-123 29-102 (283)
23 PF02118 Srg: Srg family chemo 88.0 7.3 0.00016 27.4 8.6 89 34-122 7-107 (275)
24 PF02101 Ocular_alb: Ocular al 82.2 20 0.00044 27.4 9.4 102 22-123 24-143 (405)
25 PF02117 7TM_GPCR_Sra: Serpent 80.1 21 0.00047 26.3 11.5 95 28-122 24-127 (328)
26 PF06681 DUF1182: Protein of u 71.1 19 0.0004 25.2 5.5 84 35-123 51-144 (226)
27 PF04789 DUF621: Protein of un 62.3 60 0.0013 23.8 8.9 92 30-122 18-116 (305)
28 PF01102 Glycophorin_A: Glycop 56.8 19 0.00042 22.8 3.3 25 28-54 69-93 (122)
29 PF10326 7TM_GPCR_Str: Serpent 55.7 31 0.00066 24.8 4.7 44 33-76 7-51 (307)
30 KOG4193|consensus 49.5 1.1E+02 0.0024 24.9 7.2 72 44-122 339-412 (610)
31 PF10327 7TM_GPCR_Sri: Serpent 44.1 1.2E+02 0.0027 22.0 7.3 63 24-86 8-75 (303)
32 PF11446 DUF2897: Protein of u 43.7 33 0.00071 18.6 2.5 19 31-49 8-26 (55)
33 PF09882 DUF2109: Predicted me 43.6 66 0.0014 18.7 4.1 46 37-82 6-52 (78)
34 PF10319 7TM_GPCR_Srj: Serpent 42.1 63 0.0014 23.9 4.5 43 34-76 14-57 (310)
35 PF02532 PsbI: Photosystem II 35.7 59 0.0013 15.9 2.6 15 28-42 12-26 (36)
36 KOG4564|consensus 31.1 2.7E+02 0.0058 22.1 10.5 78 35-112 155-245 (473)
37 KOG3114|consensus 27.1 2.6E+02 0.0056 20.6 8.8 59 27-86 119-179 (290)
38 CHL00024 psbI photosystem II p 23.8 43 0.00093 16.4 0.7 16 27-42 11-26 (36)
39 PF05393 Hum_adeno_E3A: Human 23.3 1E+02 0.0022 18.5 2.4 10 51-60 57-66 (94)
No 1
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.82 E-value=1.4e-19 Score=132.47 Aligned_cols=102 Identities=14% Similarity=0.010 Sum_probs=86.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHHh--hccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchhh
Q psy11793 21 ETGCDIYGLFGSISGFGSAMNNAVIAYDR--YRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDI 98 (123)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~--~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~~ 98 (123)
+....+..+++.+++++|+.||++++++. .+++++|+++|+++.|||++|++.++..|..... ..+.|..|+..|++
T Consensus 29 ~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~-~~~~w~fG~~lCk~ 107 (338)
T PHA03234 29 KKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLN-REALFNFNQAFCQC 107 (338)
T ss_pred HHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCccCchhHHHH
Confidence 34566677888889999999999999854 4666778999999999999999998775555443 34569999999999
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 99 YGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 99 ~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
..+......++|++++++||+|||+
T Consensus 108 ~~~~~~~~~~~Si~~L~~ISiDRY~ 132 (338)
T PHA03234 108 VLFIYHASCSYSICMLAIIATIRYK 132 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHe
Confidence 9999999999999999999999995
No 2
>KOG4219|consensus
Probab=99.79 E-value=2.9e-19 Score=130.57 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=100.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHccccccccc
Q psy11793 16 RVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWET 94 (123)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~ 94 (123)
....+..+..+..+++.++..+++.||+++++++..+|++|+-+|+|+.|||++|++.+.+ .|..........|.+|..
T Consensus 27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f 106 (423)
T KOG4219|consen 27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF 106 (423)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence 4566788888899999999999999999999999999999999999999999999999999 888776666778999999
Q ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 95 GCDIYGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 95 ~C~~~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
.|++..|+......+|+++|+++|+|||.
T Consensus 107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~ 135 (423)
T KOG4219|consen 107 YCRFVNFFPITAVFVSVFTLVAIAIDRYM 135 (423)
T ss_pred eeeeccccchhhhhHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999994
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.72 E-value=9.4e-17 Score=116.73 Aligned_cols=99 Identities=18% Similarity=0.145 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhh
Q psy11793 22 TGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG 100 (123)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~ 100 (123)
....+..+++.+++++|++||+++++++.++|+ +++.|+++.|||++|++. .. +|..+... .++|..|+..|+...
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~ 102 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVL 102 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHH
Confidence 344566788888899999999999998887665 457899999999999976 55 89876644 446889999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRyi 123 (123)
+.......+|++++++||+|||+
T Consensus 103 ~~~~~~~~~Si~tL~~IsidRY~ 125 (323)
T PHA02834 103 GVYFVGFFSNMFFVTLISIDRYI 125 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99888999999999999999994
No 4
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.66 E-value=1.3e-15 Score=114.31 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchhhhhHh
Q psy11793 23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLF 102 (123)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~ 102 (123)
...+..+++.+++++|++||+++++++. +|++|+++|+++.|||++|++.....|.++... .++|..++..|+...+.
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l~lPf~i~~~-~~~W~fg~~~Ck~~~~l 174 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVIDFPFIIYNE-FDQWIFGDFMCKVISAS 174 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccchhhHHHH
Confidence 3445566778889999999999997765 478899999999999999998765589887654 45798999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcC
Q psy11793 103 GSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 103 ~~~~~~~s~~~l~~is~dRyi 123 (123)
.....+++++.++++++|||+
T Consensus 175 ~~~~~~~Si~~L~~isiDRYl 195 (417)
T PHA02638 175 YYIGFFSNMFLITLMSIDRYF 195 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999994
No 5
>KOG4220|consensus
Probab=99.65 E-value=1.3e-17 Score=122.36 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=94.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhh
Q psy11793 22 TGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG 100 (123)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~ 100 (123)
.+....+++...+.++.+.||+++++.+..+|+||+..|+|+.+||++|++.+.+ +|+......-+.|..|...|++..
T Consensus 28 ~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWL 107 (503)
T KOG4220|consen 28 WQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWL 107 (503)
T ss_pred eEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHH
Confidence 4455566667777899999999999999999999999999999999999999999 999998888899999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRyi 123 (123)
.+.+...-+|+++|.+|++|||.
T Consensus 108 alDYvaSNASVmNLLiISFDRYF 130 (503)
T KOG4220|consen 108 ALDYVASNASVMNLLIISFDRYF 130 (503)
T ss_pred HHHHHhhhhhhhhhheeeeecce
Confidence 99999999999999999999993
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.63 E-value=3.2e-15 Score=111.92 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=78.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCC--CChhHHHHHHHHHHHHHHHhHHHHHHHHHHccccc--ccccch
Q psy11793 21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSL--KTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVI--GWETGC 96 (123)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l--~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~--~~~~~C 96 (123)
+.......+++.+++++|++||+++++++.++++. +++.++++.|||++|++....+|..+.. +.|. .++..|
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~i~~---~~~~~~~g~~~C 105 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIMLS---NQGLLSGSVAGC 105 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHh---cCccccCCCCee
Confidence 33455677888888999999999999876533332 3466789999999999864338877643 2343 346899
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 97 DIYGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 97 ~~~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
++..+....+..+|++++++||+|||+
T Consensus 106 k~~~~l~~~~~~~Si~tL~~ISiDRY~ 132 (409)
T PHA03235 106 KFASLLYYASCTVGFATVALIAADRYR 132 (409)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999994
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.61 E-value=6.2e-15 Score=107.29 Aligned_cols=102 Identities=24% Similarity=0.280 Sum_probs=88.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchhhhh
Q psy11793 21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYG 100 (123)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 100 (123)
+....+..+++.+++++|++||+++++++.++ ++|++.|+++.|+|++|++.++..|........++|..++..|+...
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 115 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEFACKIVS 115 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCCCCcHHHHHHH
Confidence 34556677788888999999999999998887 88999999999999999987766666655555667888999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRyi 123 (123)
+.......+|.++++++|+|||+
T Consensus 116 ~~~~~~~~~S~~~l~~iaidRy~ 138 (335)
T PHA03087 116 GLYYIGFYNSMNFITVMSVDRYI 138 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999984
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.54 E-value=3.6e-14 Score=97.65 Aligned_cols=83 Identities=29% Similarity=0.463 Sum_probs=76.4
Q ss_pred HHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHHHHHHHH
Q psy11793 41 NNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAY 119 (123)
Q Consensus 41 gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~ 119 (123)
||.++++++.++|++|++.++++.|||++|++.+.. .|........+.|..++..|+...++......++.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999999998 8877776666778899999999999999999999999999999
Q ss_pred HhcC
Q psy11793 120 DRYR 123 (123)
Q Consensus 120 dRyi 123 (123)
|||+
T Consensus 81 dRy~ 84 (257)
T PF00001_consen 81 DRYL 84 (257)
T ss_dssp HHHH
T ss_pred cccc
Confidence 9984
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.37 E-value=7.5e-13 Score=93.72 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=77.6
Q ss_pred HHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHHH
Q psy11793 36 FGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNN 114 (123)
Q Consensus 36 ~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l 114 (123)
++|++||..++..+.++|+||+|++++++.+|++|+++... .|.....+ +..+.....|..+.++..++..++...+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999998 88877433 3456788899999999999999999999
Q ss_pred HHHHHHhcC
Q psy11793 115 AVIAYDRYR 123 (123)
Q Consensus 115 ~~is~dRyi 123 (123)
.+|++||++
T Consensus 80 l~i~iDr~i 88 (257)
T PF10320_consen 80 LAIAIDRLI 88 (257)
T ss_pred HHHHhhhee
Confidence 999999984
No 10
>KOG2087|consensus
Probab=98.74 E-value=1.6e-08 Score=73.80 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHH--------cccccccccchhhhhHhhH
Q psy11793 34 SGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSF--------YQRVIGWETGCDIYGLFGS 104 (123)
Q Consensus 34 ~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~--------~~~~~~~~~~C~~~~~~~~ 104 (123)
+..+++.||.+++......+...++..+++.|+|++|++++.. .-....+.. .-.| ....+|+..+|+..
T Consensus 34 i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W-~tg~gC~~aGflav 112 (363)
T KOG2087|consen 34 IALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDW-QTGLGCPVAGFLAV 112 (363)
T ss_pred hhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhh-hhcCCCchHHHHHH
Confidence 3789999999999988887777778999999999999999887 333333221 1224 45589999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy11793 105 ISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 105 ~~~~~s~~~l~~is~dRyi 123 (123)
+..-.|++.|+.+++||++
T Consensus 113 FASElSv~~LT~itlEr~l 131 (363)
T KOG2087|consen 113 FASELSVFLLTLITLERWL 131 (363)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999973
No 11
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.95 E-value=0.00016 Score=52.58 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhH
Q psy11793 23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGL 101 (123)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~ 101 (123)
|.....++..+...++++|-++++....+.|++|++.+=++.-++++|++.... +.... ......++..|+.|++
T Consensus 5 ~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~----~~~~~~~s~lC~~Qaf 80 (303)
T PF05462_consen 5 QIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTL----SPSAGENSFLCQFQAF 80 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCCCcchhhHhH
Confidence 344444555566889999999999999999999999999999999999987765 33222 1223445788999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhc
Q psy11793 102 FGSISGFGSAMNNAVIAYDRY 122 (123)
Q Consensus 102 ~~~~~~~~s~~~l~~is~dRy 122 (123)
+..++..++.+=.++||++=|
T Consensus 81 liq~f~~as~lWt~~iA~nly 101 (303)
T PF05462_consen 81 LIQFFMLASFLWTLCIAFNLY 101 (303)
T ss_pred HHHHhhHHHHHHHHHHHHHhh
Confidence 999999999988888988654
No 12
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=97.86 E-value=0.00028 Score=48.44 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=53.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHHHHHHHHHhc
Q psy11793 53 KSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122 (123)
Q Consensus 53 ~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy 122 (123)
++.+.-.+-++.||.++|++.++. +.........+....++..|..|+++......++-+...+||+.=|
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~ 100 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTF 100 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677999999999999998 4433333333444457799999999999999999999999988643
No 13
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.81 E-value=0.00027 Score=50.37 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-H----HHHHHHHHcccccccccchh-hhhHhhHHHHH
Q psy11793 35 GFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-M----PMLVVNSFYQRVIGWETGCD-IYGLFGSISGF 108 (123)
Q Consensus 35 ~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~----p~~~~~~~~~~~~~~~~~C~-~~~~~~~~~~~ 108 (123)
.++|++.|..+++.+.|.+++|++-+.+-.+.|++|.+.... . |..+. +.....+.... ..+.....+-.
T Consensus 4 s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~----~~~~~~~~~~s~~~g~~~~~~y~ 79 (274)
T PF10328_consen 4 SIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLL----DISFLPSSLNSIIFGFIGMFCYF 79 (274)
T ss_pred eHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccccCchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998876 2 43333 22223333333 33666667777
Q ss_pred HHHHHHHHHHHHhcC
Q psy11793 109 GSAMNNAVIAYDRYR 123 (123)
Q Consensus 109 ~s~~~l~~is~dRyi 123 (123)
.+..+-.+||++|+.
T Consensus 80 ~~~~~~~liaiNRf~ 94 (274)
T PF10328_consen 80 IGPLSHLLIAINRFC 94 (274)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999999999973
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.73 E-value=0.0014 Score=47.65 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhh----ccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhh
Q psy11793 24 CDIYGLFGSISGFGSAMNNAVIAYDRY----RTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDI 98 (123)
Q Consensus 24 ~~~~~~~~~~~~~~~~~gN~~~i~~~~----~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~ 98 (123)
.....++..+..++|++||+.++.+.. |+|++ +|.+..+.+||+++++.... ........+.......+..++.
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l-~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKL-SPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKI 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence 445566777778999999999987755 33333 49999999999999998877 4444444444444455667777
Q ss_pred hhHhhHHHHHHHHHHHHHHHHH
Q psy11793 99 YGLFGSISGFGSAMNNAVIAYD 120 (123)
Q Consensus 99 ~~~~~~~~~~~s~~~l~~is~d 120 (123)
..++-.+....+.+.-+.+++-
T Consensus 85 ~~~~~~f~~~~s~W~tt~Lsvf 106 (303)
T PF05296_consen 85 IDFLWMFSNSSSLWFTTWLSVF 106 (303)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 7777777888888888887763
No 15
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=97.45 E-value=0.0013 Score=47.71 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhHHHhhccCCCCC-hhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccch------------hhhh
Q psy11793 35 GFGSAMNNAVIAYDRYRTKSLKT-PSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGC------------DIYG 100 (123)
Q Consensus 35 ~~~~~~gN~~~i~~~~~~~~l~~-~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C------------~~~~ 100 (123)
.++|+++|.+-+.+..| |++|+ +.|.++..+|++|+..... .+.......... .+..| ....
T Consensus 7 ~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~---~~~~C~~~~sy~~~~~~~~~~ 82 (318)
T PF10324_consen 7 SIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFY---EDDECIPPYSYFWAYFKLIME 82 (318)
T ss_pred eHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccCCCCcccHHHHHHHHHHH
Confidence 57899999998876644 77776 8899999999999999998 777664443321 11222 2334
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRyi 123 (123)
.....+--.|.+.-++||..|++
T Consensus 83 ~l~~~~~~~S~WL~V~mA~iR~l 105 (318)
T PF10324_consen 83 SLSDIFRRISIWLGVLMALIRYL 105 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667788999999999999973
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.33 E-value=0.0055 Score=44.90 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=71.5
Q ss_pred cccc-chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH--HHHHHHHHHcccccccc
Q psy11793 17 VIGW-ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN--MPMLVVNSFYQRVIGWE 93 (123)
Q Consensus 17 ~~~~-~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~--~p~~~~~~~~~~~~~~~ 93 (123)
+... +++++..++...+.+++..+-+...+.++.+++..|.|.|-.+.-|++.|+..... .-.....+ .|.
T Consensus 24 ~~~~~g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i------~G~ 97 (313)
T PF10321_consen 24 WSESYGVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAI------FGA 97 (313)
T ss_pred cccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh------cCc
Confidence 4444 78889999999999999999999999999988777789999999999999988765 22222111 244
Q ss_pred cchhhhh------HhhHHHHHHHHHHHHHHHHHhc
Q psy11793 94 TGCDIYG------LFGSISGFGSAMNNAVIAYDRY 122 (123)
Q Consensus 94 ~~C~~~~------~~~~~~~~~s~~~l~~is~dRy 122 (123)
..|.... .....+=.++...-..++++|.
T Consensus 98 vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~ 132 (313)
T PF10321_consen 98 VFCSYPRFIYIMGCIALGSWCGSCIICILLAINRC 132 (313)
T ss_pred cccCCchHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 5564433 2233334556667777888884
No 17
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.64 E-value=0.0057 Score=43.77 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=52.2
Q ss_pred CChhHHHHHHHHHHHHHHHhH--HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHHHHHHHHH
Q psy11793 56 KTPSNLFIFNQALLDLCMMVN--MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYD 120 (123)
Q Consensus 56 ~~~~~~~l~~La~~dl~~~~~--~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~d 120 (123)
.+|.|..+.||++++.+..+. .|.... . .+....++.+||...|..-..-+.|+.+.+.+|.-
T Consensus 8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~-~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvf 72 (265)
T PF03402_consen 8 LKPIDLILIHLALANILVLLSRGIPQTMA-F-FGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVF 72 (265)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHHHHHH-H-hhcccCCCceeeeeeeehHHhchhhHHhhhHHHHH
Confidence 459999999999999999988 886543 2 23345689999999999999999999999888764
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=95.65 E-value=0.12 Score=37.18 Aligned_cols=92 Identities=13% Similarity=0.011 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhhccCCC-CChhHHHHHHHHHHHHHHHhH-HHHHHHHHHccc-----------ccccccch
Q psy11793 30 FGSISGFGSAMNNAVIAYDRYRTKSL-KTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQR-----------VIGWETGC 96 (123)
Q Consensus 30 ~~~~~~~~~~~gN~~~i~~~~~~~~l-~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~-----------~~~~~~~C 96 (123)
++.+.+.+|+.-|.+.++.+.++..- -++..+++.|-|+.|++.... .-.... ..... ...++..|
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R-~i~~~~~~~~~~~GpC~~~~~~~C 82 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPR-IIPNGTSIAVISYGPCRYFGPWFC 82 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCCCcEEEEeeecceecCcHHH
Confidence 34566889999999999888865432 347788999999999998876 222211 11221 12445556
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHhc
Q psy11793 97 DIYGLFGSISGFGSAMNNAVIAYDRY 122 (123)
Q Consensus 97 ~~~~~~~~~~~~~s~~~l~~is~dRy 122 (123)
.........+...+.+.+..--+-||
T Consensus 83 ~~~y~~~~~~~~~s~~~i~~sf~yRy 108 (292)
T PF10317_consen 83 FFCYHIMLHFSIHSGWSIILSFYYRY 108 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554555555555555555565
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=95.46 E-value=0.41 Score=35.12 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHH---HHHHHccc----ccccccchhhhh
Q psy11793 29 LFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPML---VVNSFYQR----VIGWETGCDIYG 100 (123)
Q Consensus 29 ~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~---~~~~~~~~----~~~~~~~C~~~~ 100 (123)
.+-.++.++|+..+...++...+++..|....+++....++.++.+.. .-.- +..+.... ...+...|....
T Consensus 21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR 100 (324)
T PF10292_consen 21 IFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILR 100 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHH
Confidence 344555677777777777778788888988888888888888888765 3222 23222211 223556687778
Q ss_pred HhhHHHHHHHHHHHHHHHHHhc
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRY 122 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRy 122 (123)
....++......+..++++||+
T Consensus 101 ~~~~~~~~~~~~t~v~l~IER~ 122 (324)
T PF10292_consen 101 IPYNFGLFLVSFTTVSLVIERT 122 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999996
No 20
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=94.15 E-value=0.89 Score=32.79 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcc--cccc-cccchhhhh
Q psy11793 25 DIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQ--RVIG-WETGCDIYG 100 (123)
Q Consensus 25 ~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~--~~~~-~~~~C~~~~ 100 (123)
.....+.++...+....|...++.+..+|+.+++...++---...|.+.+.. .+......... .... .+..=...+
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 3445566677888999999999998877773334444555567889999988 55443333221 1111 111223444
Q ss_pred HhhHHHHHHHHHHHHHHHHHhc
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRY 122 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRy 122 (123)
+...............+|+||-
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~ 107 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRV 107 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5666667788899999999994
No 21
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=93.50 E-value=0.05 Score=37.81 Aligned_cols=87 Identities=14% Similarity=-0.019 Sum_probs=0.8
Q ss_pred HHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHH
Q psy11793 35 GFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMN 113 (123)
Q Consensus 35 ~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~ 113 (123)
..+++.+-.+++......|++|++.+....||++++++.... ...... ...+..+..+..|.....+.+++..++..=
T Consensus 11 ~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~-~~~~~~~~~~~~C~~~a~~~hy~~la~f~W 89 (242)
T PF00002_consen 11 CSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQ-TFSPISTTNHCLCRAIAILLHYFFLASFFW 89 (242)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhh-ccccccccccccchhhhhHhHHHHHHHHHH
Confidence 344555545555555556788887788889999999887765 322111 111111112335999999999988888777
Q ss_pred HHHHHHHhc
Q psy11793 114 NAVIAYDRY 122 (123)
Q Consensus 114 l~~is~dRy 122 (123)
+.+.++|-|
T Consensus 90 m~~~~~~l~ 98 (242)
T PF00002_consen 90 MLVEAFYLY 98 (242)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 777777654
No 22
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=89.72 E-value=3.9 Score=29.40 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHHHHHHhH-HHHHHHHH---Hccc-ccccccchhhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 55 LKTPSNLFIFNQALLDLCMMVN-MPMLVVNS---FYQR-VIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 55 l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~---~~~~-~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
++++-+-++.+-+++|++.... ........ ..+- ...++..-+.................+.+|..||.
T Consensus 29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ 102 (283)
T PF10323_consen 29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYL 102 (283)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Confidence 5678899999999999998765 22111111 1110 11222334555666677788888889999999973
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=87.98 E-value=7.3 Score=27.42 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhHHHhhccCC--C-CChhHHHHHHHHHHHHHHHhH-HHHH-HHHH-------HcccccccccchhhhhH
Q psy11793 34 SGFGSAMNNAVIAYDRYRTKS--L-KTPSNLFIFNQALLDLCMMVN-MPML-VVNS-------FYQRVIGWETGCDIYGL 101 (123)
Q Consensus 34 ~~~~~~~gN~~~i~~~~~~~~--l-~~~~~~~l~~La~~dl~~~~~-~p~~-~~~~-------~~~~~~~~~~~C~~~~~ 101 (123)
-++.+++.+..+++.+.++|+ . +++-+-+...=++.|++.-.. .+.. +... .....+..+...+...+
T Consensus 7 Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (275)
T PF02118_consen 7 YGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYF 86 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHH
Confidence 355677777788888877776 3 445555555555566655443 3221 1111 00001223445667777
Q ss_pred hhHHHHHHHHHHHHHHHHHhc
Q psy11793 102 FGSISGFGSAMNNAVIAYDRY 122 (123)
Q Consensus 102 ~~~~~~~~s~~~l~~is~dRy 122 (123)
+...+..+.......++++|+
T Consensus 87 l~~~~~~~Q~~~~~~is~nR~ 107 (275)
T PF02118_consen 87 LQYYFAYVQYLSTILISLNRF 107 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999995
No 24
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=82.20 E-value=20 Score=27.36 Aligned_cols=102 Identities=16% Similarity=0.029 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCC----CCCh--hHHHHHHHHHHHHHHHhH-HHHHHHHHHccc-cc---
Q psy11793 22 TGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKS----LKTP--SNLFIFNQALLDLCMMVN-MPMLVVNSFYQR-VI--- 90 (123)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~----l~~~--~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~-~~--- 90 (123)
.+...+-.+.+..+.+|+.|-...+.--.+... .++| ..-.+..++++|++.++. +......+-..+ ..
T Consensus 24 Fq~~~f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s 103 (405)
T PF02101_consen 24 FQPDAFNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSIS 103 (405)
T ss_pred cChhhhhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCccccccc
Confidence 344555666777778888876666553222111 1112 234677899999998877 555444332211 10
Q ss_pred -------ccccchhhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 91 -------GWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 91 -------~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
.+...|....-...++..++.+=..+-|+|-|+
T Consensus 104 ~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~L 143 (405)
T PF02101_consen 104 DVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYL 143 (405)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 133678776666667777787778888888663
No 25
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=80.09 E-value=21 Score=26.33 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccCCCCC-hhHHHHHHHHHHHHHHHhH--HHHH-HHH-HHccc----ccccccchhh
Q psy11793 28 GLFGSISGFGSAMNNAVIAYDRYRTKSLKT-PSNLFIFNQALLDLCMMVN--MPML-VVN-SFYQR----VIGWETGCDI 98 (123)
Q Consensus 28 ~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~-~~~~~l~~La~~dl~~~~~--~p~~-~~~-~~~~~----~~~~~~~C~~ 98 (123)
..+..++.+++.......+-...++.-.+. +...++.+|..+++-.... .... +.. +...+ ....+..|..
T Consensus 24 ~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~~ 103 (328)
T PF02117_consen 24 QIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSECFP 103 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCceee
Confidence 344455566777776777777767666665 4466777777777766554 2222 222 22111 3356778888
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHhc
Q psy11793 99 YGLFGSISGFGSAMNNAVIAYDRY 122 (123)
Q Consensus 99 ~~~~~~~~~~~s~~~l~~is~dRy 122 (123)
......++....++...++.+||-
T Consensus 104 ~~~~~~~~~~~~~~~q~aL~idRl 127 (328)
T PF02117_consen 104 YYYFYYFTNSGMIFIQFALTIDRL 127 (328)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888999999999994
No 26
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=71.09 E-value=19 Score=25.22 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhHHHhhccCCCC-C-hhHHHHHHHHHHHHHHHhH-HHHHHHHH------Hc-ccccccccchhhhhHhhH
Q psy11793 35 GFGSAMNNAVIAYDRYRTKSLK-T-PSNLFIFNQALLDLCMMVN-MPMLVVNS------FY-QRVIGWETGCDIYGLFGS 104 (123)
Q Consensus 35 ~~~~~~gN~~~i~~~~~~~~l~-~-~~~~~l~~La~~dl~~~~~-~p~~~~~~------~~-~~~~~~~~~C~~~~~~~~ 104 (123)
...+.+-+.+.+..+.++|++- + ...+.. +-...-+. +|..+.+. +. ++.+.+-..|.+..-+..
T Consensus 51 ~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvF-----aT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk~f~S 125 (226)
T PF06681_consen 51 NTVSWLFSYFLCIFIWRRKNLIRSYKSTIVF-----ATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLKNFTS 125 (226)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHhhcCeEEE-----eeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHHhHHH
Confidence 4566666666666666666631 1 111211 11112222 44433322 11 223446667987776666
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy11793 105 ISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 105 ~~~~~s~~~l~~is~dRyi 123 (123)
.+...+-...+++|+|||.
T Consensus 126 ~t~s~~~vip~aVAIyRy~ 144 (226)
T PF06681_consen 126 STTSCAQVIPVAVAIYRYL 144 (226)
T ss_pred HHhhhhccchhhhhhhhhh
Confidence 6666666667789999984
No 27
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=62.27 E-value=60 Score=23.85 Aligned_cols=92 Identities=11% Similarity=0.101 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHH-hHHHhhccCCCCC-hhHHHHHHHHHHHHHHHhH-----HHHHHHHHHcccccccccchhhhhHh
Q psy11793 30 FGSISGFGSAMNNAV-IAYDRYRTKSLKT-PSNLFIFNQALLDLCMMVN-----MPMLVVNSFYQRVIGWETGCDIYGLF 102 (123)
Q Consensus 30 ~~~~~~~~~~~gN~~-~i~~~~~~~~l~~-~~~~~l~~La~~dl~~~~~-----~p~~~~~~~~~~~~~~~~~C~~~~~~ 102 (123)
.++...+.+.+.++. .+..+...++.|+ +-.+|+..|..+-.+.+.. .|..+.+....+.. .+..-.+..+.
T Consensus 18 ~Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~-~s~~f~~~Sy~ 96 (305)
T PF04789_consen 18 LFVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV-QSELFIFMSYL 96 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh-ccchhhHHHHH
Confidence 333334444444433 3344445555544 6678999999887766543 67776555443332 23344566677
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q psy11793 103 GSISGFGSAMNNAVIAYDRY 122 (123)
Q Consensus 103 ~~~~~~~s~~~l~~is~dRy 122 (123)
..++-++-.+.=.++|+.|.
T Consensus 97 idf~h~siLfsNlviaIqR~ 116 (305)
T PF04789_consen 97 IDFCHYSILFSNLVIAIQRF 116 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 78888888889999999994
No 28
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=56.83 E-value=19 Score=22.80 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccCC
Q psy11793 28 GLFGSISGFGSAMNNAVIAYDRYRTKS 54 (123)
Q Consensus 28 ~~~~~~~~~~~~~gN~~~i~~~~~~~~ 54 (123)
.++.++.+++|++. ++.+.++|+|+
T Consensus 69 Ii~gv~aGvIg~Il--li~y~irR~~K 93 (122)
T PF01102_consen 69 IIFGVMAGVIGIIL--LISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHS-
T ss_pred hhHHHHHHHHHHHH--HHHHHHHHHhc
Confidence 33444444444442 33444444443
No 29
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=55.72 E-value=31 Score=24.80 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHHhhccCCC-CChhHHHHHHHHHHHHHHHhH
Q psy11793 33 ISGFGSAMNNAVIAYDRYRTKSL-KTPSNLFIFNQALLDLCMMVN 76 (123)
Q Consensus 33 ~~~~~~~~gN~~~i~~~~~~~~l-~~~~~~~l~~La~~dl~~~~~ 76 (123)
+.++++++.|++.++.+.++.+. -..-.+++...|+.|+..+..
T Consensus 7 ~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~ 51 (307)
T PF10326_consen 7 IGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSIL 51 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHH
Confidence 34678999999999988755333 335566777788889988876
No 30
>KOG4193|consensus
Probab=49.51 E-value=1.1e+02 Score=24.91 Aligned_cols=72 Identities=7% Similarity=-0.022 Sum_probs=40.8
Q ss_pred HhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccc-ccc-chhhhhHhhHHHHHHHHHHHHHHHHHh
Q psy11793 44 VIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIG-WET-GCDIYGLFGSISGFGSAMNNAVIAYDR 121 (123)
Q Consensus 44 ~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~-~~~-~C~~~~~~~~~~~~~s~~~l~~is~dR 121 (123)
+.++....-|++|+-......||+++=++.-+ ..+. +.+.. ... .|....++.+++..+..+=+...++.-
T Consensus 339 lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l---~fL~----~~~~~~~~~~~C~~~a~llhff~LaaF~Wm~leg~hl 411 (610)
T KOG4193|consen 339 LTIATYLLFRKLQNDRTKIHINLCLCLFLAEL---LFLL----GIDRTSTSVVLCIAAAILLHFFFLAAFFWMLLEGFHL 411 (610)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH---HHhc----ccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444346666677776221111 1222 22222 222 799999999999999888888877754
Q ss_pred c
Q psy11793 122 Y 122 (123)
Q Consensus 122 y 122 (123)
|
T Consensus 412 ~ 412 (610)
T KOG4193|consen 412 Y 412 (610)
T ss_pred H
Confidence 3
No 31
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=44.12 E-value=1.2e+02 Score=22.00 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhc-cCCCCChhHHHH---HHHHHHHHHHHhH-HHHHHHHHHc
Q psy11793 24 CDIYGLFGSISGFGSAMNNAVIAYDRYR-TKSLKTPSNLFI---FNQALLDLCMMVN-MPMLVVNSFY 86 (123)
Q Consensus 24 ~~~~~~~~~~~~~~~~~gN~~~i~~~~~-~~~l~~~~~~~l---~~La~~dl~~~~~-~p~~~~~~~~ 86 (123)
..+....+-+++.++++-|.+.++.+.. .+++.+-.++++ ....++|+-.+.. -|..+.-..+
T Consensus 8 P~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~a 75 (303)
T PF10327_consen 8 PQWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPA 75 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeE
Confidence 3455566777799999999999987764 445555444433 3445689988877 6655544433
No 32
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=43.66 E-value=33 Score=18.56 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q psy11793 31 GSISGFGSAMNNAVIAYDR 49 (123)
Q Consensus 31 ~~~~~~~~~~gN~~~i~~~ 49 (123)
++++.+-.++||+.++---
T Consensus 8 IIviVlgvIigNia~LK~s 26 (55)
T PF11446_consen 8 IIVIVLGVIIGNIAALKYS 26 (55)
T ss_pred HHHHHHHHHHhHHHHHHHh
Confidence 3333445578999887443
No 33
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=43.64 E-value=66 Score=18.71 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHH
Q psy11793 37 GSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVV 82 (123)
Q Consensus 37 ~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~ 82 (123)
.|+++=...+-++..+.+.++-.|..-.|-+++-++.... -|+...
T Consensus 6 ~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~i 52 (78)
T PF09882_consen 6 IGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGAI 52 (78)
T ss_pred HHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4444444555556666777788888888999988877777 676543
No 34
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=42.13 E-value=63 Score=23.94 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhHHHhhccCCCCC-hhHHHHHHHHHHHHHHHhH
Q psy11793 34 SGFGSAMNNAVIAYDRYRTKSLKT-PSNLFIFNQALLDLCMMVN 76 (123)
Q Consensus 34 ~~~~~~~gN~~~i~~~~~~~~l~~-~~~~~l~~La~~dl~~~~~ 76 (123)
.++++.+-|-+.++.+..+|+.+- .-.+++..-|+-|++.+..
T Consensus 14 ~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~ 57 (310)
T PF10319_consen 14 FGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVV 57 (310)
T ss_pred HHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHH
Confidence 477888999999999998888754 6678888999999999887
No 35
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=35.68 E-value=59 Score=15.90 Aligned_cols=15 Identities=13% Similarity=-0.162 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy11793 28 GLFGSISGFGSAMNN 42 (123)
Q Consensus 28 ~~~~~~~~~~~~~gN 42 (123)
+++++.++++|.+.|
T Consensus 12 V~ffv~LFifGflsn 26 (36)
T PF02532_consen 12 VIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccccCC
Confidence 344555566666654
No 36
>KOG4564|consensus
Probab=31.07 E-value=2.7e+02 Score=22.08 Aligned_cols=78 Identities=13% Similarity=-0.038 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHccc------------ccccccchhhhhH
Q psy11793 35 GFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQR------------VIGWETGCDIYGL 101 (123)
Q Consensus 35 ~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~------------~~~~~~~C~~~~~ 101 (123)
.-++++.=++.+.++...|++|=+.|+.-.||..+=++-+.. .-....-..... ...+...|+...+
T Consensus 155 yslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~ 234 (473)
T KOG4564|consen 155 YSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFV 234 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHH
Confidence 333444333445556677889989999999999888877776 444432221111 1256778998887
Q ss_pred hhHHHHHHHHH
Q psy11793 102 FGSISGFGSAM 112 (123)
Q Consensus 102 ~~~~~~~~s~~ 112 (123)
+...+..+..+
T Consensus 235 ~~~Yf~~aNf~ 245 (473)
T KOG4564|consen 235 FFQYFVLANFF 245 (473)
T ss_pred HHHHHHHHHHH
Confidence 77777666544
No 37
>KOG3114|consensus
Probab=27.12 E-value=2.6e+02 Score=20.62 Aligned_cols=59 Identities=8% Similarity=-0.051 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH--HHHHHHHHHc
Q psy11793 27 YGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN--MPMLVVNSFY 86 (123)
Q Consensus 27 ~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~--~p~~~~~~~~ 86 (123)
+.+...+++++...||+...+.-...+.-+.-.++=+..-| +-++.+-. .|..++..+.
T Consensus 119 fWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~f~~v~sa-a~~iy~Y~~ivp~~l~~iL~ 179 (290)
T KOG3114|consen 119 FWITATLVFALAISGNLATFIRNGTLKGTAYGYDFGLVTSA-ATLIYGYLTIVPLALWGILS 179 (290)
T ss_pred HHHHHHHHHHHHHcccHHHHHHhccccceeeecccchHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444455677788877766544443332323333222222 22333333 7777766544
No 38
>CHL00024 psbI photosystem II protein I
Probab=23.84 E-value=43 Score=16.40 Aligned_cols=16 Identities=13% Similarity=-0.174 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11793 27 YGLFGSISGFGSAMNN 42 (123)
Q Consensus 27 ~~~~~~~~~~~~~~gN 42 (123)
.+++++.++++|.+.|
T Consensus 11 vV~ffvsLFifGFlsn 26 (36)
T CHL00024 11 VVIFFVSLFIFGFLSN 26 (36)
T ss_pred HHHHHHHHHHccccCC
Confidence 3444555566666654
No 39
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=23.26 E-value=1e+02 Score=18.49 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=4.9
Q ss_pred ccCCCCChhH
Q psy11793 51 RTKSLKTPSN 60 (123)
Q Consensus 51 ~~~~l~~~~~ 60 (123)
++|+-|+|.|
T Consensus 57 kRkrsRrPIY 66 (94)
T PF05393_consen 57 KRKRSRRPIY 66 (94)
T ss_pred HhhhccCCcc
Confidence 4444455654
Done!