Query psy11793
Match_columns 123
No_of_seqs 115 out of 1481
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 19:07:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnl_A C-X-C chemokine recepto 99.8 9.9E-20 3.4E-24 128.2 13.2 105 18-123 5-109 (296)
2 3uon_A Human M2 muscarinic ace 99.8 9.4E-20 3.2E-24 134.7 10.8 105 19-123 18-123 (467)
3 4dkl_A MU-type opioid receptor 99.8 4.1E-19 1.4E-23 131.0 12.3 106 18-123 11-116 (464)
4 2ks9_A Substance-P receptor; w 99.8 1.1E-18 3.6E-23 125.7 13.7 103 21-123 29-132 (364)
5 2rh1_A Beta-2-adrenergic recep 99.8 4.9E-19 1.7E-23 133.2 11.4 103 21-123 37-140 (500)
6 1u19_A Rhodopsin; G protein-co 99.8 2.4E-18 8.1E-23 122.8 13.7 102 22-123 36-138 (349)
7 4grv_A Neurotensin receptor ty 99.8 6.5E-19 2.2E-23 133.0 10.7 101 23-123 31-137 (510)
8 3v2y_A Sphingosine 1-phosphate 99.8 1E-18 3.5E-23 132.1 11.6 102 21-123 60-162 (520)
9 3vw7_A Proteinase-activated re 99.8 5E-19 1.7E-23 131.4 9.2 104 20-123 16-120 (484)
10 3rze_A Histamine H1 receptor, 99.8 6.9E-19 2.4E-23 129.6 9.0 101 23-123 7-108 (452)
11 4amj_A Beta-1 adrenergic recep 99.8 7E-19 2.4E-23 123.7 8.2 104 20-123 7-111 (315)
12 3odu_A C-X-C chemokine recepto 99.8 4.1E-18 1.4E-22 127.0 12.0 102 21-123 45-146 (502)
13 3pbl_A D(3) dopamine receptor, 99.8 1.6E-18 5.4E-23 128.7 9.4 101 23-123 37-139 (481)
14 3eml_A Human adenosine A2A rec 99.8 3.4E-18 1.2E-22 126.8 9.8 102 20-123 17-119 (488)
15 4eiy_A Adenosine receptor A2A/ 99.8 5.4E-18 1.8E-22 124.6 10.2 102 20-123 27-129 (447)
16 4ea3_A Fusion protein of nocic 99.8 8.5E-18 2.9E-22 124.2 11.2 103 21-123 122-224 (434)
17 2z73_A Rhodopsin; visual pigme 99.7 1.2E-17 4.1E-22 123.6 11.7 101 23-123 33-135 (448)
18 3sn6_R Lysozyme, beta-2 adrene 99.7 8.5E-18 2.9E-22 126.7 9.5 103 21-123 179-282 (514)
19 1hll_A Alpha-2A adrenergic rec 96.4 0.0015 5.1E-08 30.4 1.6 15 109-123 2-16 (32)
20 2lot_A Apelin receptor; membra 96.1 0.0003 1E-08 38.7 -2.1 31 26-56 30-60 (64)
21 3arc_I Photosystem II reaction 34.1 42 0.0014 15.9 2.6 15 28-42 12-26 (38)
22 2jp3_A FXYD domain-containing 21.1 90 0.0031 16.8 2.6 13 25-37 22-34 (67)
No 1
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.83 E-value=9.9e-20 Score=128.19 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=92.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchh
Q psy11793 18 IGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD 97 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~ 97 (123)
|.++.+..+..+.+.+++++|++||+++++++.++|++|+++|+++.|||++|++.+...|....... ++|..++..|+
T Consensus 5 e~~~~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~~~~~~-~~~~~~~~~c~ 83 (296)
T 2lnl_A 5 ETETLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKV-NGWIFGTFLCK 83 (296)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-SSSCCSSHHHH
T ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHHHhhcc-CCCccchhHHH
Confidence 34455667777888888999999999999999999999999999999999999998766666665444 46999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 98 IYGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 98 ~~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
...+....+..+|+++++++|+|||+
T Consensus 84 ~~~~~~~~~~~~s~~~l~~isidRy~ 109 (296)
T 2lnl_A 84 VVSLLKEVNFYSGILLLACISVDRYL 109 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999983
No 2
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.82 E-value=9.4e-20 Score=134.68 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=95.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchh
Q psy11793 19 GWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCD 97 (123)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~ 97 (123)
..+....+..+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++. .|..+.....+.|..++..|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~ 97 (467)
T 3uon_A 18 YKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCD 97 (467)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHh
Confidence 3445567777888888999999999999999999999999999999999999999888 999888888888999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 98 IYGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 98 ~~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
+..++..++..+|++++++||+|||+
T Consensus 98 ~~~~~~~~~~~~s~~~l~~isidRy~ 123 (467)
T 3uon_A 98 LWLALDYVVSNASVMNLLIISFDRYF 123 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999984
No 3
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.80 E-value=4.1e-19 Score=131.01 Aligned_cols=106 Identities=23% Similarity=0.178 Sum_probs=94.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchh
Q psy11793 18 IGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD 97 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~ 97 (123)
........+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++.+|..+.....+.|..++..|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~~~~~~~~~~C~ 90 (464)
T 4dkl_A 11 SPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILCK 90 (464)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCSHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhh
Confidence 33445567777888888999999999999999999999999999999999999998877888877777788999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 98 IYGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 98 ~~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
+..++..++..+|++++++||+|||+
T Consensus 91 ~~~~~~~~~~~~s~~~l~~is~dRy~ 116 (464)
T 4dkl_A 91 IVISIDYYNMFTSIFTLCTMSVDRYI 116 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999984
No 4
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.80 E-value=1.1e-18 Score=125.67 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=92.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhh
Q psy11793 21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIY 99 (123)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~ 99 (123)
+.+..+..+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.+.. .|........+.|..++..|+..
T Consensus 29 ~~~~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~ 108 (364)
T 2ks9_A 29 AWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFH 108 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhH
Confidence 33445557778888999999999999999999999999999999999999999888 88877766777899999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 100 GLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 100 ~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
.++...+..+|+++++++|+|||+
T Consensus 109 ~~~~~~~~~~s~~~l~~isidRy~ 132 (364)
T 2ks9_A 109 NFFPIAAVFASIYSMTAVAFDRYM 132 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999984
No 5
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.80 E-value=4.9e-19 Score=133.17 Aligned_cols=103 Identities=21% Similarity=0.189 Sum_probs=94.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhh
Q psy11793 21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIY 99 (123)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~ 99 (123)
+....+..+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++. +|..+.....+.|..++..|++.
T Consensus 37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~ 116 (500)
T 2rh1_A 37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 116 (500)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHH
Confidence 34455567778888999999999999999999999999999999999999999999 99988877778899999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 100 GLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 100 ~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
.++..++..+|++++++||+|||+
T Consensus 117 ~~~~~~~~~~Si~~l~~isidRy~ 140 (500)
T 2rh1_A 117 TSIDVLCVTASIETLCVIAVDRYF 140 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999984
No 6
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.79 E-value=2.4e-18 Score=122.79 Aligned_cols=102 Identities=23% Similarity=0.293 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhh
Q psy11793 22 TGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG 100 (123)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~ 100 (123)
....+..+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.+.. .|........+.|..++..|+...
T Consensus 36 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 115 (349)
T 1u19_A 36 WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHHHH
Confidence 3455667778888999999999999999999999999999999999999999999 998887777778999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRyi 123 (123)
++...+..+|+++++++|+|||+
T Consensus 116 ~~~~~~~~~s~~~l~~isidRy~ 138 (349)
T 1u19_A 116 FFATLGGEIALWSLVVLAIERYV 138 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999984
No 7
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.79 E-value=6.5e-19 Score=133.03 Aligned_cols=101 Identities=21% Similarity=0.243 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC---ChhHHHHHHHHHHHHHHHhH-HHHHHHHHHc--ccccccccch
Q psy11793 23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLK---TPSNLFIFNQALLDLCMMVN-MPMLVVNSFY--QRVIGWETGC 96 (123)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~---~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~--~~~~~~~~~C 96 (123)
...+..+++.+++++|++||+++++++.++|++| +++|+|+.|||++|++.++. +|..+..... +.|..|+..|
T Consensus 31 ~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C 110 (510)
T 4grv_A 31 SKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGC 110 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHH
Confidence 3456667778889999999999999998876654 68899999999999999999 9998876543 4589999999
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 97 DIYGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 97 ~~~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
++..++...+..+|++++++||+|||+
T Consensus 111 ~~~~~~~~~~~~~S~~~l~~is~dRy~ 137 (510)
T 4grv_A 111 RGYYFLRDACTYATALNVASLSVARYL 137 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheE
Confidence 999999999999999999999999984
No 8
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.79 E-value=1e-18 Score=132.11 Aligned_cols=102 Identities=19% Similarity=0.065 Sum_probs=91.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhh
Q psy11793 21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIY 99 (123)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~ 99 (123)
+.+..+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. .|..+.. ....|..+...|++.
T Consensus 60 ~~~~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~ 138 (520)
T 3v2y_A 60 ENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLR 138 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchH
Confidence 33446777888888999999999999999999999999999999999999999999 8877765 455688899999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 100 GLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 100 ~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
.++..++.++|++++++||+|||+
T Consensus 139 ~~~~~~~~~~S~~~l~~isidRy~ 162 (520)
T 3v2y_A 139 EGSMFVALSASVFSLLAIAIERYI 162 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999994
No 9
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.78 E-value=5e-19 Score=131.43 Aligned_cols=104 Identities=13% Similarity=-0.049 Sum_probs=91.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHH-HHHHHHcccccccccchhh
Q psy11793 20 WETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPM-LVVNSFYQRVIGWETGCDI 98 (123)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~-~~~~~~~~~~~~~~~~C~~ 98 (123)
.+....+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++..|. .......+.|..++..|++
T Consensus 16 ~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~~ 95 (484)
T 3vw7_A 16 SSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCRF 95 (484)
T ss_dssp CHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHhH
Confidence 455566777788888999999999999999999999999999999999999999776544 4444444579999999999
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 99 YGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 99 ~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
..++..++..+|++++++||+|||+
T Consensus 96 ~~~~~~~~~~~S~~~l~~is~dRy~ 120 (484)
T 3vw7_A 96 VTAAFYCNMYASILLMTVISIDRFL 120 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999984
No 10
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=129.57 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhH
Q psy11793 23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGL 101 (123)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~ 101 (123)
...+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. +|..+.....+.|..++..|++..+
T Consensus 7 ~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~ 86 (452)
T 3rze_A 7 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLS 86 (452)
T ss_dssp --CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHH
Confidence 344455667777999999999999999999999999999999999999999888 9999988888889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC
Q psy11793 102 FGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 102 ~~~~~~~~s~~~l~~is~dRyi 123 (123)
+..++..+|++++++||+|||+
T Consensus 87 ~~~~~~~~s~~~l~~is~dRy~ 108 (452)
T 3rze_A 87 MDYVASTASIFSVFILCIDRYR 108 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999984
No 11
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.77 E-value=7e-19 Score=123.69 Aligned_cols=104 Identities=20% Similarity=0.128 Sum_probs=94.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhh
Q psy11793 20 WETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDI 98 (123)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~ 98 (123)
++.......+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.+.. .|........+.|..++..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~ 86 (315)
T 4amj_A 7 SQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCEL 86 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHH
Confidence 344556677778888999999999999999999999999999999999999999888 9988887777889999999999
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 99 YGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 99 ~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
..++...+..+|.++++++|+|||+
T Consensus 87 ~~~~~~~~~~~S~~~l~~isidRy~ 111 (315)
T 4amj_A 87 WTSLDVLCVTASIETLCVIAIDRYL 111 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999984
No 12
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.77 E-value=4.1e-18 Score=127.03 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=91.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchhhhh
Q psy11793 21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYG 100 (123)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 100 (123)
.....+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++.+|..+..... .|..++..|++..
T Consensus 45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~-~~~~~~~~C~~~~ 123 (502)
T 3odu_A 45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCKAVH 123 (502)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHT-CCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCchhhhhHH
Confidence 445667778888889999999999999999999999999999999999999996448988876554 6889999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRyi 123 (123)
++..++..+|++++++||+|||+
T Consensus 124 ~~~~~~~~~s~~~l~~is~dRy~ 146 (502)
T 3odu_A 124 VIYTVNLYSSVWILAFISLDRYL 146 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999984
No 13
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=128.67 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHc-ccccccccchhhhh
Q psy11793 23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFY-QRVIGWETGCDIYG 100 (123)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~-~~~~~~~~~C~~~~ 100 (123)
...+..+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++. +|..+..... +.|..++..|++..
T Consensus 37 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~ 116 (481)
T 3pbl_A 37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFV 116 (481)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHH
Confidence 344555677778999999999999999999999999999999999999999999 9988766555 56899999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRyi 123 (123)
++..++..++++++++||+|||+
T Consensus 117 ~~~~~~~~~s~~~l~~is~dRy~ 139 (481)
T 3pbl_A 117 TLDVMMCTASIWNLCAISIDRYT 139 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999984
No 14
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.76 E-value=3.4e-18 Score=126.81 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=90.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhh
Q psy11793 20 WETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDI 98 (123)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~ 98 (123)
+.....+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. +|..+... ..|..+...|++
T Consensus 17 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~~~~~~~~~C~~ 94 (488)
T 3eml_A 17 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLF 94 (488)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--TCCEECHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchHHHH
Confidence 444556777788888999999999999999999999999999999999999999888 99877643 357888999999
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 99 YGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 99 ~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
..++..++..+|++++++||+|||+
T Consensus 95 ~~~~~~~~~~~s~~~l~~is~dRy~ 119 (488)
T 3eml_A 95 IACFVLVLTQSSIFSLLAIAIDRYI 119 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 9999999999999999999999984
No 15
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.75 E-value=5.4e-18 Score=124.65 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=90.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhh
Q psy11793 20 WETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDI 98 (123)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~ 98 (123)
+.....+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. +|..+... ..|..+...|++
T Consensus 27 ~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C~~ 104 (447)
T 4eiy_A 27 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLF 104 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHHHH
Confidence 344556677788888999999999999999999999999999999999999999888 99877633 357778899999
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 99 YGLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 99 ~~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
..++...+..+|++++++||+|||+
T Consensus 105 ~~~~~~~~~~~S~~~l~~is~dRy~ 129 (447)
T 4eiy_A 105 IACFVLVLTQSSIFSLLAIAIDRYI 129 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9999999999999999999999984
No 16
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.75 E-value=8.5e-18 Score=124.24 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=91.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchhhhh
Q psy11793 21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYG 100 (123)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 100 (123)
.....+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++..|........+.|..+...|+...
T Consensus 122 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~ll~~LAvsDll~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 201 (434)
T 4ea3_A 122 LGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVI 201 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHeeeeeeecCccCchhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCcccHHHHHH
Confidence 33455566677778999999999999999999999999999999999999988433998888888888999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRyi 123 (123)
++..++..+|++++++||+|||+
T Consensus 202 ~~~~~~~~~S~~~l~~isidRy~ 224 (434)
T 4ea3_A 202 AIDYYNMFTSTFTLTAMSVDRYV 224 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999984
No 17
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.75 E-value=1.2e-17 Score=123.56 Aligned_cols=101 Identities=35% Similarity=0.574 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH--HHHHHHHHHcccccccccchhhhh
Q psy11793 23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN--MPMLVVNSFYQRVIGWETGCDIYG 100 (123)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~--~p~~~~~~~~~~~~~~~~~C~~~~ 100 (123)
......+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++. +|..+.....+.|..++..|++..
T Consensus 33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 112 (448)
T 2z73_A 33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYG 112 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHHH
Confidence 345566777888999999999999999999999999999999999999999875 787777777778989999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 101 LFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 101 ~~~~~~~~~s~~~l~~is~dRyi 123 (123)
++...+..+|+++++++|+|||+
T Consensus 113 ~~~~~~~~~S~~~l~~isidRy~ 135 (448)
T 2z73_A 113 FIGGIFGFMSIMTMAMISIDRYN 135 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999984
No 18
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.74 E-value=8.5e-18 Score=126.67 Aligned_cols=103 Identities=21% Similarity=0.188 Sum_probs=94.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhh
Q psy11793 21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIY 99 (123)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~ 99 (123)
+.......+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++. .|..+.....+.|..++..|++.
T Consensus 179 ~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~ 258 (514)
T 3sn6_R 179 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFW 258 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhH
Confidence 44456667788888999999999999999999999999999999999999999988 99888888888899999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793 100 GLFGSISGFGSAMNNAVIAYDRYR 123 (123)
Q Consensus 100 ~~~~~~~~~~s~~~l~~is~dRyi 123 (123)
.++..++..+|++++++||+|||+
T Consensus 259 ~~l~~~~~~~S~~~l~~isidRy~ 282 (514)
T 3sn6_R 259 TSIDVLCVTASIETLCVIAVDRYF 282 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999984
No 19
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=96.38 E-value=0.0015 Score=30.39 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcC
Q psy11793 109 GSAMNNAVIAYDRYR 123 (123)
Q Consensus 109 ~s~~~l~~is~dRyi 123 (123)
+|++++++||+|||+
T Consensus 2 ~Si~~L~~is~dRy~ 16 (32)
T 1hll_A 2 SSIVHLCAISLDRYW 16 (32)
T ss_dssp HHHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 689999999999984
No 20
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=96.06 E-value=0.0003 Score=38.72 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Q psy11793 26 IYGLFGSISGFGSAMNNAVIAYDRYRTKSLK 56 (123)
Q Consensus 26 ~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~ 56 (123)
+..+++.+++++|++||+++++++.++|.-+
T Consensus 30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~~ 60 (64)
T 2lot_A 30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGHH 60 (64)
T ss_dssp SSHHHHHHTTTTTTTSSSSHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeeEecccc
Confidence 5567788889999999999999998877643
No 21
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=34.10 E-value=42 Score=15.93 Aligned_cols=15 Identities=7% Similarity=-0.246 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy11793 28 GLFGSISGFGSAMNN 42 (123)
Q Consensus 28 ~~~~~~~~~~~~~gN 42 (123)
+++++.++++|.+.|
T Consensus 12 V~ffvsLFiFGfLsn 26 (38)
T 3arc_I 12 VTFFVLLFVFGFLSG 26 (38)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccCC
Confidence 344555567777765
No 22
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=21.06 E-value=90 Score=16.83 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy11793 25 DIYGLFGSISGFG 37 (123)
Q Consensus 25 ~~~~~~~~~~~~~ 37 (123)
.+++.++.+++++
T Consensus 22 LifA~vLfi~GI~ 34 (67)
T 2jp3_A 22 LIFGGLLCIAGIA 34 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 3344443333333
Done!