RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11793
(123 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 92.3 bits (229), Expect = 2e-23
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 26 IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMV--NMPMLVVN 83
G+ G I G N ++ Y +TKSL+TP+N+FI N A D + P++ ++
Sbjct: 40 FIGICGIIGCGG----NGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS 95
Query: 84 SFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
F ++ I C +YG G I GF S M A+I+ DRY
Sbjct: 96 CFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRY 134
Score = 58.8 bits (142), Expect = 2e-11
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 1 MMV--NMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRT 52
+ P++ ++ F ++ I C +YG G I GF S M A+I+ DRY
Sbjct: 83 FSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNV 136
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 85.1 bits (211), Expect = 4e-21
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 26 IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMV-NMPMLVVNS 84
L + N + Y + K L+TP N + N A+ DL M+ + S
Sbjct: 44 YMFLLIMLGFPI----NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 85 FYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
+ + TGC++ G F ++ G + + V+A +RY
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERY 137
Score = 55.1 bits (133), Expect = 2e-10
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 1 MMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRT 52
+ + S + + TGC++ G F ++ G + + V+A +RY
Sbjct: 88 VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVV 139
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 48.3 bits (114), Expect = 8e-08
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 2/105 (1%)
Query: 19 GWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCM-MVNM 77
E + + + + N + ++TK P FI N AL DL +
Sbjct: 58 DKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYT 117
Query: 78 PMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
L+++ + + ++ S + IA +RY
Sbjct: 118 ANLLLSGATTYKLTPAQ-WFLREGSMFVALSASVFSLLAIAIERY 161
Score = 26.0 bits (56), Expect = 3.6
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 2 MVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRT 52
+ L+++ + + ++ S + IA +RY T
Sbjct: 114 VAYTANLLLSGATTYKLTPAQ-WFLREGSMFVALSASVFSLLAIAIERYIT 163
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 44.3 bits (104), Expect = 2e-06
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 50 YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
+ +L+ +N F+ + A D+ + ++ +P + G+ C F +
Sbjct: 47 WLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT-----ISTGFCAACHGCLFIACFVLV 101
Query: 106 SGFGSAMNNAVIAYDRY 122
S + IA DRY
Sbjct: 102 LTQSSIFSLLAIAIDRY 118
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 44.1 bits (104), Expect = 2e-06
Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 42 NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGL 101
N ++ K L++ ++ + + ++ DL ++ +P V++ G C +
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFG-NFLCKAVHV 124
Query: 102 FGSISGFGSAMNNAVIAYDRY 122
+++ + S A I+ DRY
Sbjct: 125 IYTVNLYSSVWILAFISLDRY 145
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 42.4 bits (99), Expect = 8e-06
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 50 YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
+ +L+ +N F+ + A D+ + ++ +P + S G+ C F +
Sbjct: 57 WLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS-----TGFCAACHGCLFIACFVLV 111
Query: 106 SGFGSAMNNAVIAYDRY 122
S + IA DRY
Sbjct: 112 LTQSSIFSLLAIAIDRY 128
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 42.0 bits (99), Expect = 1e-05
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 50 YRTKSLKTPSNLFIFNQALLDLCMMV-NMPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
K ++T +N F+ N A + M N + + + C + F + F
Sbjct: 58 LAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVF 117
Query: 109 GSAMNNAVIAYDRYR 123
S + +A+DRY
Sbjct: 118 ASIYSMTAVAFDRYM 132
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 42.2 bits (99), Expect = 1e-05
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 50 YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
+ + L+T +N FI + A DL M + +P + + C+ + +
Sbjct: 208 AKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVT 267
Query: 109 GSAMNNAVIAYDRY 122
S VIA DRY
Sbjct: 268 ASIETLCVIAVDRY 281
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 41.5 bits (97), Expect = 2e-05
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 29 LFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQR 88
L+ + G N V+ Y R +KT +N++IFN AL D +P VN
Sbjct: 23 LYSIVCVVGLFGNFLVM-YVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGT 81
Query: 89 VIGWETG---CDIYGLFGSISGFGSAMNNAVIAYDRY 122
W G C I + F S ++ DRY
Sbjct: 82 ---WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRY 115
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 41.2 bits (96), Expect = 2e-05
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 50 YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
+ L+T +N F+F+ A DL + + +M + + + W G CD++ +
Sbjct: 49 KVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGY---WPLGPVVCDLWLALDYV 105
Query: 106 SGFGSAMNNAVIAYDRYR 123
S MN +I++DRY
Sbjct: 106 VSNASVMNLLIISFDRYF 123
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 41.3 bits (96), Expect = 2e-05
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 50 YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
+ ++L+T +N + + A+ DL + + MP +V V W CD++ +
Sbjct: 64 LKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGV--WNFSRICCDVFVTLDVM 121
Query: 106 SGFGSAMNNAVIAYDRYR 123
S N I+ DRY
Sbjct: 122 MCTASIWNLCAISIDRYT 139
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 40.9 bits (96), Expect = 3e-05
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 29 LFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQR 88
L+ ++ G N V+ Y R +KT +N++IFN AL D +++ +P +
Sbjct: 131 LYLAVCVGGLLGNCLVM-YVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGF 189
Query: 89 VIGW---ETGCDIYGLFGSISGFGSAMNNAVIAYDRYR 123
W C + F S ++ DRY
Sbjct: 190 ---WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYV 224
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 40.4 bits (94), Expect = 4e-05
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 50 YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
+ L T NL+I + ++ DL + V MPM ++ + W G C + +
Sbjct: 34 RSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSK---WSLGRPLCLFWLSMDYV 90
Query: 106 SGFGSAMNNAVIAYDRYR 123
+ S + ++ DRYR
Sbjct: 91 ASTASIFSVFILCIDRYR 108
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 40.5 bits (94), Expect = 5e-05
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 26 IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNS 84
+ + I N VI + + L+T +N FI + A DL M + +P +
Sbjct: 43 MGIVMSLIVLAIVFGNVLVIT-AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHI 101
Query: 85 FYQRVIGWETG---CDIYGLFGSISGFGSAMNNAVIAYDRYR 123
+ W G C+ + + S VIA DRY
Sbjct: 102 LMKM---WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYF 140
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 38.9 bits (91), Expect = 1e-04
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 50 YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
T+ L+T +NLFI + A DL + ++ +P + C+++ +
Sbjct: 37 GSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVT 96
Query: 109 GSAMNNAVIAYDRY 122
S VIA DRY
Sbjct: 97 ASIETLCVIAIDRY 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.048
Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 46/139 (33%)
Query: 24 CDIYGLFGSISGFGSAMNNAVIAYDRYRT-----------KSLK--TPS-------NLFI 63
+S ++ + + +D ++ SL P+ L +
Sbjct: 323 LTTNPR--RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 64 FNQALLD-------LCMM-VNM----PMLVVNSFYQR--VIGW--ETGCDIYGLFGSISG 107
F L ++ ++ M+VVN ++ V E+ I ++ +
Sbjct: 381 FPP---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 108 FGS---AMNNAVIAYDRYR 123
A++ +++ D Y
Sbjct: 438 KLENEYALHRSIV--DHYN 454
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.11
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 48/135 (35%)
Query: 26 IYGLFGSISGFGSAMNNAVIA-----YDRYRT----------KSLK-----TPSNLFIFN 65
+ +FG G G+ + Y Y ++L T +F
Sbjct: 156 LVAIFG---GQGN--TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 66 QAL-----LD----------LCMM-VNMPMLVVNSFYQ-----RVIGWETGCDIYGLFGS 104
Q L L+ L + ++ P++ V +++G+ G ++
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKG 269
Query: 105 ISGFGSAMNNAV-IA 118
+G + AV IA
Sbjct: 270 ATGHSQGLVTAVAIA 284
Score = 28.1 bits (62), Expect = 0.83
Identities = 29/198 (14%), Positives = 49/198 (24%), Gaps = 101/198 (51%)
Query: 6 PMLVV------------------------------NSFYQRVIGWETG--CDIYGL---- 29
PML + N V+ +G +YGL
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV---SGPPQSLYGLNLTL 393
Query: 30 --------------------------FGSISG-FGSA-MNNAV--IAYD------RYRTK 53
F ++ F S + A I D + K
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 54 SLKTP-------SNLFIFNQALL-DLC-MMVNMPMLVVNSFYQRVIGWETGCDIYGL--- 101
++ P S+L + + ++ + ++ +P V WET
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP---VK--------WETTTQFKATHIL 502
Query: 102 -FG--SISGFGSAMNNAV 116
FG SG G +
Sbjct: 503 DFGPGGASGLGVLTHRNK 520
Score = 27.3 bits (60), Expect = 1.4
Identities = 19/101 (18%), Positives = 27/101 (26%), Gaps = 33/101 (32%)
Query: 3 VNMPM-LVVNSFYQRVIGWETGC----DIYG----------------LFGSISGFGSAMN 41
M M L S + + W D YG FG G N
Sbjct: 1629 QGMGMDLYKTSKAAQDV-WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 42 NAVIAYDRYRTKSLKT---------PSNLFIFN--QALLDL 71
+ + ++ LKT S + F + LL
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 25.2 bits (56), Expect = 6.8
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 20/50 (40%)
Query: 20 WE--TGCDIYGL------FGSI--------SGFGSAMNNAVIAYDRYRTK 53
+ +YG +G I FG M VIAY R
Sbjct: 112 FRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFG--MR--VIAYTRSSVD 157
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 25.3 bits (56), Expect = 6.8
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 18/49 (36%)
Query: 22 TGCDIYGL------FGSI--------SGFGSAMNNAVIAYDRYRTKSLK 56
++ L G I FG M V+ YD + + LK
Sbjct: 135 LARELNRLTLGVIGTGRIGSRVAMYGLAFG--MK--VLCYDVVKREDLK 179
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 24.8 bits (55), Expect = 7.8
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 18/50 (36%)
Query: 18 IGWETGCDIYG--L----FGSI--------SGFGSAMNNAVIAYDRYRTK 53
G++ +YG + G+I FG + + + R+R
Sbjct: 136 TGFKRIESLYGKKVGILGMGAIGKAIARRLIPFG--VK--LYYWSRHRKV 181
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 24.9 bits (55), Expect = 8.9
Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 35 GFGSAMNNAVIAYDRYRTK 53
FG N V+ YD Y +
Sbjct: 189 AFG--FN--VLFYDPYLSD 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.442
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,953,659
Number of extensions: 102456
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 35
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)