RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11793
         (123 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQ 87
           N +  Y   + K L+TP N  + N A+ DL M+       + +   
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH 100


>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain
           {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 430

 Score = 26.1 bits (56), Expect = 1.5
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 16  RVIGWETGCDIYGLF---GSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFN 65
           ++    TG  +       GS+ G+     +  I    Y+  S  +P  ++  +
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEI---FYQFTSFLSPGIIYHCD 411


>d1ok8a2 f.10.1.1 (A:1-297) Envelope glycoprotein {Dengue virus type
           2 [TaxId: 11060]}
          Length = 297

 Score = 24.3 bits (53), Expect = 5.1
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 5/20 (25%)

Query: 12  SFYQRVIGWETGCDIYGLFG 31
           S   R  GW  GC   GLFG
Sbjct: 95  SMVDR--GWGNGC---GLFG 109



 Score = 24.3 bits (53), Expect = 5.1
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 5/20 (25%)

Query: 84  SFYQRVIGWETGCDIYGLFG 103
           S   R  GW  GC   GLFG
Sbjct: 95  SMVDR--GWGNGC---GLFG 109


>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 580

 Score = 23.8 bits (51), Expect = 7.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 20  WETGCDIYGLFGSISGFGSAMNN 42
           +E G   YG F +   FGS    
Sbjct: 211 YEIGMAKYGTFMAPDLFGSKFFM 233



 Score = 23.8 bits (51), Expect = 7.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 92  WETGCDIYGLFGSISGFGSAMNN 114
           +E G   YG F +   FGS    
Sbjct: 211 YEIGMAKYGTFMAPDLFGSKFFM 233


>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
           encephalitis virus [TaxId: 11084]}
          Length = 302

 Score = 23.6 bits (51), Expect = 8.4
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 3/13 (23%)

Query: 19  GWETGCDIYGLFG 31
           GW   C   GLFG
Sbjct: 100 GWGNHC---GLFG 109



 Score = 23.6 bits (51), Expect = 8.4
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 3/13 (23%)

Query: 91  GWETGCDIYGLFG 103
           GW   C   GLFG
Sbjct: 100 GWGNHC---GLFG 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 475,511
Number of extensions: 19495
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 13
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)