BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11794
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNIC--FSHPFISKIYQLWK 164
TT AEL A+ L LK+ S +++ I++DS V+ L + P + +I Q
Sbjct: 1086 TTNQQAELWAVDLALKD-----SGAQVNIVTDSQYVMGVLQGLPDQSDSPIVEQIIQK-- 1138
Query: 165 LIVTRGTDVVFLWCPSHCGIDGNEAVD 191
+T+ T + W P+H GI GNE VD
Sbjct: 1139 --LTQKTAIYLAWVPAHKGIGGNEEVD 1163
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Query: 103 YFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN--ICFSHPFISKIY 160
Y N TT EL A+ L L++ S S + I++DS V+ L + HP + +I
Sbjct: 1065 YLN-TTNQQTELHAVKLALED-----SGSYVNIVTDSQYVVGILASRPTETDHPIVKEII 1118
Query: 161 QLWKLIVTRGTDVVFL-WCPSHCGIDGNEAVD 191
+L K G + ++L W P+H GI GNE +D
Sbjct: 1119 ELMK-----GKEKIYLSWLPAHKGIGGNEQID 1145
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 39.3 bits (90), Expect = 0.038, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT AEL+A+ L L++ S + I++DS L + S P S+ + ++I
Sbjct: 1058 TTNQKAELMAILLALQD-----SKETVNIVTDSQYALGVIS----SQPTQSESPIVQQII 1108
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+T+ V W P+H GI GNE +D
Sbjct: 1109 EELTKKEQVYLTWVPAHKGIGGNEKID 1135
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 39.3 bits (90), Expect = 0.042, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT AEL+A+ + L++ S ++ I++DS VL I S P S + ++I
Sbjct: 1060 TTNQKAELMAVLIALQD-----SKEQVNIVTDSQYVLG----IISSQPTQSDSPIVQQII 1110
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+T+ V W P+H GI GNE +D
Sbjct: 1111 EELTKKERVYLTWVPAHKGIGGNEKID 1137
>sp|P16088|POL_FIVPE Pol polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=pol PE=1 SV=1
Length = 1124
Score = 38.1 bits (87), Expect = 0.078, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 112 AELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHP-FISKIYQLWKLIVTRG 170
AE+ AL L LK SE + II+DS V+ NI P + I+Q + +
Sbjct: 633 AEIQALLLALKAGSE-----EMNIITDSQYVI----NIILQQPDMMEGIWQEVLEELEKK 683
Query: 171 TDVVFLWCPSHCGIDGNEAVD 191
T + W P H GI GNE VD
Sbjct: 684 TAIFIDWVPGHKGIPGNEEVD 704
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 37.4 bits (85), Expect = 0.14, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT AEL A+YL L++ S S + I++DS L ++ A + S I QL
Sbjct: 1054 TTNQKAELQAIYLALQD-----SGSEVNIVTDSQYALGIIQAQPDKSESEIVNQIIEQL- 1107
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
+ V W P+H GI GNE VD
Sbjct: 1108 ----IQKERVYLSWVPAHKGIGGNEQVD 1131
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 36.2 bits (82), Expect = 0.31, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S S + I++DS L ++ A + S I QL
Sbjct: 1054 TTNQKTELQAIHLALQD-----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI 1108
Query: 164 KLIVTRGTDVVFL-WCPSHCGIDGNEAVD 191
K D V+L W P+H GI GNE VD
Sbjct: 1109 K------KDRVYLSWVPAHKGIGGNEQVD 1131
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 35.4 bits (80), Expect = 0.53, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 112 AELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLIVT--- 168
AE+ AL L LK E + II+DS ++ NI P K+ +W+ ++
Sbjct: 633 AEIQALLLALKAGPE-----EMNIITDSQYMI----NILSQQP--DKMEGIWQEVLEELE 681
Query: 169 RGTDVVFLWCPSHCGIDGNEAVD 191
+ T + W P H GI GNE VD
Sbjct: 682 KKTAIFIDWVPGHKGIPGNEEVD 704
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 35.4 bits (80), Expect = 0.65, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 15/89 (16%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISK---IYQLW 163
TT EL A++L L++ S S + I++DS L I + P S+ + Q+
Sbjct: 1064 TTNQKTELQAIHLALQD-----SGSEVNIVTDSQYALG----IIQAQPDKSESEIVNQII 1114
Query: 164 KLIVTRGTDVVFL-WCPSHCGIDGNEAVD 191
+ ++ + D V+L W P+H GI GNE VD
Sbjct: 1115 EQLIQK--DKVYLSWVPAHKGIGGNEQVD 1141
>sp|Q9QBZ1|POL_HV1M2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP257) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 35.0 bits (79), Expect = 0.68, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISK---IYQLW 163
TT EL A+ L L++ S S + I++DS L I +HP S+ + Q+
Sbjct: 1058 TTNQKTELQAIQLALQD-----SGSEVNIVTDSQYALG----IIQAHPDKSESEIVNQII 1108
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
+ ++ + V W P+H GI GNE VD
Sbjct: 1109 EQLIQK-ERVYLSWVPAHKGIGGNEQVD 1135
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 35.0 bits (79), Expect = 0.70, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 112 AELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLIVTRGT 171
AE+ AL L LK SE + II+DS +L NI P + + LW+ ++ +
Sbjct: 632 AEVQALLLALKAGSE-----EMNIITDSQYIL----NILNQQPDLME--GLWQEVLEQME 680
Query: 172 D--VVFL-WCPSHCGIDGNEAVD 191
+F+ W P H GI GNE VD
Sbjct: 681 KKIAIFIDWVPGHKGIPGNEEVD 703
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.0 bits (79), Expect = 0.74, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT AEL A+ L L++ S S + I++DS L ++ A + S I QL
Sbjct: 1054 TTNQKAELQAIQLALQD-----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI 1108
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1109 K-----KEKVYLSWVPAHKGIGGNEQVD 1131
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 34.7 bits (78), Expect = 0.86, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT AEL A+ L L++ S S + I++DS L I + P S+ + ++I
Sbjct: 1057 TTNQKAELQAIQLALQD-----SRSEVNIVTDSQYALG----IIQAQPDRSEAELVNQII 1107
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+ + V W P+H GI GNE VD
Sbjct: 1108 EQLIKKEKVYLSWVPAHKGIGGNEQVD 1134
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 34.7 bits (78), Expect = 0.92, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A+YL L++ S + I++DS L ++ A + S I QL
Sbjct: 1059 TTNQKTELQAIYLALQD-----SGLEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQLI 1113
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1114 K-----KEKVYLAWVPAHKGIGGNEQVD 1136
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 34.7 bits (78), Expect = 1.0, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISK---IYQLW 163
TT EL A+ L L++ S S + I++DS L I + P S+ + Q+
Sbjct: 1063 TTNQKTELQAIQLALQD-----SGSEVNIVTDSQYALG----IILAQPDKSESEIVNQII 1113
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
+ ++++ V W P+H GI GNE VD
Sbjct: 1114 EQLISK-ERVYLSWVPAHKGIGGNEQVD 1140
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 34.7 bits (78), Expect = 1.1, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A+YL L++ S + I++DS L ++ A + S I QL
Sbjct: 1059 TTNQKTELQAIYLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI 1113
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1114 K-----KEKVYLAWVPAHKGIGGNEQVD 1136
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 34.7 bits (78), Expect = 1.1, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A+YL L++ S + I++DS L ++ A + S I QL
Sbjct: 1071 TTNQKTELQAIYLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI 1125
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1126 K-----KEKVYLAWVPAHKGIGGNEQVD 1148
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 34.7 bits (78), Expect = 1.1, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A+YL L++ S + I++DS L ++ A + S I QL
Sbjct: 1059 TTNQKTELQAIYLALQD-----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLI 1113
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1114 K-----KEKVYLAWVPAHKGIGGNEQVD 1136
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 34.3 bits (77), Expect = 1.3, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 102 RYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNIC---FSHPFISK 158
R TT AEL A+ + L++ S + I++DS V++ L C + P + +
Sbjct: 1076 RELENTTNQQAELTAVKMALED-----SGENVNIVTDSQYVMNIL-TACPQESNSPLVEQ 1129
Query: 159 IYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
I Q + + V W P+H GI GN +D
Sbjct: 1130 IIQ----ALMKKRQVYLQWVPAHKGIGGNTEID 1158
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 34.3 bits (77), Expect = 1.4, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT AEL A+ + L+E S + I++DS + I S P S+ + ++I
Sbjct: 1069 TTNQKAELQAILMALQE-----SGRDVNIVTDSQYAMG----IIHSQPDKSESELVSQII 1119
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+ + V W P+H GI GNE VD
Sbjct: 1120 EELIKKERVYLSWVPAHKGIGGNEQVD 1146
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S S + I++DS L ++ A + S I QL
Sbjct: 1054 TTNQKTELQAIHLALQD-----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL- 1107
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
+ V W P+H GI GNE VD
Sbjct: 1108 ----IQKEKVYLSWVPAHKGIGGNEQVD 1131
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT EL A+YL L+E S + I++DS L I + P S+ + ++I
Sbjct: 1060 TTNQKTELQAIYLALQE-----SGPEVNIVTDSQYALG----IIQAQPDKSESELVNQII 1110
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+ + W P+H GI GNE VD
Sbjct: 1111 EELIKKEKFYLSWVPAHKGIGGNEQVD 1137
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT AEL A+ L L+E S I++DS + I S P S+ + ++I
Sbjct: 1069 TTNQKAELQAILLALQE-----SGQEANIVTDSQYAMG----IIHSQPDKSESDLVGQII 1119
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+ + V W P+H GI GNE VD
Sbjct: 1120 EELIKKERVYLSWVPAHKGIGGNEQVD 1146
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 33.9 bits (76), Expect = 1.7, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT EL A+YL L++ S + I++DS L I + P S+ + ++I
Sbjct: 1056 TTNQKTELHAIYLALRD-----SGLEVNIVTDSQYALG----IIQAQPDKSESELVNQII 1106
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+ + V W P+H GI GNE VD
Sbjct: 1107 EELIKKEKVYLSWVPAHKGIGGNEQVD 1133
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 33.9 bits (76), Expect = 1.8, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT EL A+YL L++ S + I++DS L I + P S+ + ++I
Sbjct: 1056 TTNQKTELQAIYLALQD-----SGIEVNIVTDSQYALG----IIQAQPDKSESELVNQII 1106
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+ + V W P+H GI GNE VD
Sbjct: 1107 EELIKKEKVYLSWVPAHKGIGGNEQVD 1133
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 33.9 bits (76), Expect = 1.8, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT EL A+YL L++ S + I++DS L I + P S+ + ++I
Sbjct: 1059 TTNQKTELQAIYLALQD-----SGLEVNIVTDSQYALG----IIQAQPDKSESELVNQII 1109
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+ + V W P+H GI GNE VD
Sbjct: 1110 EELIKKEKVYLSWVPAHKGIGGNEQVD 1136
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 33.5 bits (75), Expect = 2.1, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT AEL A+ L L++ S S + I++DS L ++ A + S I QL
Sbjct: 1054 TTNQKAELQAICLALQD-----SGSEVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQLI 1108
Query: 164 KLIVTRGTDVVFL-WCPSHCGIDGNEAVD 191
K + ++L W P+H GI GNE VD
Sbjct: 1109 K------KERIYLSWVPAHKGIGGNEQVD 1131
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate EK505)
GN=gag-pol PE=3 SV=3
Length = 1448
Score = 33.5 bits (75), Expect = 2.5, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLI 166
TT AEL A+ + L++ + + I++DS VL I S P S+ + ++I
Sbjct: 1068 TTNQQAELQAVLMALQD-----AGQEVNIVTDSQYVLG----IIHSQPDKSESELVNQII 1118
Query: 167 --VTRGTDVVFLWCPSHCGIDGNEAVD 191
+ + + W P+H GI GNE +D
Sbjct: 1119 EELIKKERIYLSWVPAHKGIGGNEQID 1145
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 33.5 bits (75), Expect = 2.5, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISK---IYQLW 163
TT EL A++L L++ S S + I++DS L I + P S+ + Q+
Sbjct: 1052 TTNQKTELHAIHLALQD-----SGSEVNIVTDSQYALG----IIQAQPDRSESEIVNQII 1102
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
+ ++ + V W P+H GI GNE VD
Sbjct: 1103 EKLIEK-EKVYLSWVPAHKGIGGNEQVD 1129
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A+ L L++ S S + I++DS L ++ A + S I QL
Sbjct: 1055 TTNQKTELQAIQLALQD-----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI 1109
Query: 164 KLIVTRGTDVVFL-WCPSHCGIDGNEAVD 191
K + V+L W P+H GI GNE VD
Sbjct: 1110 K------KERVYLSWVPAHKGIGGNEQVD 1132
>sp|P56120|RNH_HELPY Ribonuclease HI OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=rnhA PE=3 SV=1
Length = 143
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 50/134 (37%), Gaps = 26/134 (19%)
Query: 91 CYLGTLVGPGP-------RYFN----------LTTIYLAELLALYLCLKEISEFHSSSRI 133
C +L PGP RY + TT EL AL LK + RI
Sbjct: 8 CDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR---PCRI 64
Query: 134 AIISDSLSVLSA----LGNICFSHPFISKIYQLWK--LIVTRGTDVVFLWCPSHCGIDGN 187
+ SDS V A L N + K LWK L V++G +V +W H G N
Sbjct: 65 TLYSDSQYVCQAINVWLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAEN 124
Query: 188 EAVDSAANHHTHPR 201
E DS A R
Sbjct: 125 ERCDSLAKLEAQKR 138
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S + I++DS L ++ A + S I QL
Sbjct: 1060 TTNQKTELQAIHLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLI 1114
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1115 K-----KEKVYLAWVPAHKGIGGNEQVD 1137
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S + I++DS L ++ A + S I QL
Sbjct: 1058 TTNQKTELQAIHLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLI 1112
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1113 K-----KEKVYLAWVPAHKGIGGNEQVD 1135
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S + I++DS L ++ A + S I QL
Sbjct: 1059 TTNQKTELQAIHLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLI 1113
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1114 K-----KEKVYLAWVPAHKGIGGNEQVD 1136
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S + I++DS L ++ A + S I QL
Sbjct: 1065 TTNQKTELQAIHLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLI 1119
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1120 K-----KEKVYLAWVPAHKGIGGNEQVD 1142
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S + I++DS L ++ A + S I QL
Sbjct: 1063 TTNQKTELQAIHLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLI 1117
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1118 K-----KEKVYLAWVPAHKGIGGNEQVD 1140
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S + I++DS L ++ A + S I QL
Sbjct: 1059 TTNQKTELQAIHLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLI 1113
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1114 K-----KEKVYLAWVPAHKGIGGNEQVD 1136
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S + I++DS L ++ A + S I QL
Sbjct: 1061 TTNQKTELQAIHLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLI 1115
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1116 K-----KEKVYLAWVPAHKGIGGNEQVD 1138
>sp|P70478|APC_RAT Adenomatous polyposis coli protein OS=Rattus norvegicus GN=Apc PE=1
SV=1
Length = 2842
Score = 32.7 bits (73), Expect = 4.0, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 181 HCGIDGNEAVDSAANHHTHPRHVNLCSTDDLK-----PWIKAIVKKDIVDMWNSIPPSN- 234
HC + A ++ HTHP N ++ P+ K K+ D NS+ S+
Sbjct: 911 HCVAEERTAARRSSASHTHPNTHNFAKSESSNRTCSMPYAKVEYKRSSNDSLNSVTSSDG 970
Query: 235 --KLKRIKPTVDSWT 247
K ++KP+V+S++
Sbjct: 971 YGKRGQMKPSVESYS 985
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT AEL A+ L L++ S + I++DS L ++ A + S I QL
Sbjct: 1059 TTNQKAELHAIQLALQD-----SRPEVNIVTDSQYALGIIQAQPDRSGSELVNQIIEQLI 1113
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1114 K-----KEKVYLSWVPAHKGIGGNEQVD 1136
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 32.3 bits (72), Expect = 4.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S + I++DS L ++ A + S I QL
Sbjct: 1071 TTNQKTELQAIHLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI 1125
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1126 K-----KEKVYLAWVPAHKGIGGNEQVD 1148
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 32.3 bits (72), Expect = 4.5, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIYQLW 163
TT EL A++L L++ S + I++DS L ++ A + S I QL
Sbjct: 1071 TTNQKTELQAIHLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI 1125
Query: 164 KLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
K V W P+H GI GNE VD
Sbjct: 1126 K-----KEKVYLAWVPAHKGIGGNEQVD 1148
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 32.3 bits (72), Expect = 5.3, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 104 FNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIY 160
F TT EL A+ L L++ S + I++DS L ++ A + S I
Sbjct: 1057 FTDTTNQKTELQAINLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIE 1111
Query: 161 QLWKLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
QL K V W P+H GI GNE VD
Sbjct: 1112 QLIK-----KEKVYLAWVPAHKGIGGNEQVD 1137
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 32.3 bits (72), Expect = 5.3, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 104 FNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDS---LSVLSALGNICFSHPFISKIY 160
F TT EL A+ L L++ S + I++DS L ++ A + S I
Sbjct: 1053 FTDTTNQKTELQAINLALQD-----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIE 1107
Query: 161 QLWKLIVTRGTDVVFLWCPSHCGIDGNEAVD 191
QL K V W P+H GI GNE VD
Sbjct: 1108 QLIK-----KEKVYLAWVPAHKGIGGNEQVD 1133
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1
Length = 153
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 195 NHHTHPRHVNLCSTDDLKPWIKAIVKKDIVDMWNSIPPSNKL 236
N H H N CS DDLK W K ++KD +++ I +N L
Sbjct: 61 NKH-HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYL 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,343,278
Number of Sequences: 539616
Number of extensions: 4936302
Number of successful extensions: 12238
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 12230
Number of HSP's gapped (non-prelim): 66
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)