Query psy11794
Match_columns 325
No_of_seqs 230 out of 1761
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:08:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06548 ribonuclease H; Provi 99.9 3.2E-25 7E-30 190.2 13.4 128 72-202 5-144 (161)
2 COG0328 RnhA Ribonuclease HI [ 99.9 4.2E-25 9.1E-30 186.8 11.7 130 72-202 3-147 (154)
3 PRK08719 ribonuclease H; Revie 99.9 2.4E-23 5.2E-28 176.8 12.9 122 72-199 4-146 (147)
4 PRK00203 rnhA ribonuclease H; 99.9 2.7E-23 6E-28 177.1 11.1 126 73-202 4-144 (150)
5 PF00075 RNase_H: RNase H; In 99.9 2.8E-23 6E-28 171.9 7.7 116 73-198 4-131 (132)
6 PRK13907 rnhA ribonuclease H; 99.8 2.1E-19 4.6E-24 148.8 12.2 124 72-200 1-127 (128)
7 cd06222 RnaseH RNase H (RNase 99.8 9E-19 2E-23 140.8 14.8 124 74-198 1-130 (130)
8 KOG3752|consensus 99.8 8E-19 1.7E-23 165.3 11.6 124 73-199 213-364 (371)
9 PRK07708 hypothetical protein; 99.7 3E-16 6.4E-21 141.5 15.3 127 72-203 73-211 (219)
10 PRK07238 bifunctional RNase H/ 99.6 2E-15 4.4E-20 146.6 14.8 124 73-202 3-134 (372)
11 PF13456 RVT_3: Reverse transc 99.3 7.9E-12 1.7E-16 95.4 8.1 85 109-198 1-85 (87)
12 PF13966 zf-RVT: zinc-binding 93.8 0.037 8E-07 42.3 1.8 30 273-302 51-83 (86)
13 PF05380 Peptidase_A17: Pao re 85.3 4.2 9.2E-05 34.6 7.5 51 72-126 81-143 (159)
14 COG3341 Predicted double-stran 55.9 21 0.00045 32.2 4.6 122 74-202 67-203 (225)
15 PF00336 DNA_pol_viral_C: DNA 52.0 13 0.00028 33.3 2.7 61 107-181 123-183 (245)
16 COG0296 GlgB 1,4-alpha-glucan 45.8 28 0.0006 36.5 4.4 72 116-190 166-247 (628)
17 KOG1812|consensus 45.1 62 0.0013 31.9 6.5 90 107-200 47-138 (384)
18 KOG1994|consensus 38.3 15 0.00032 33.3 1.0 33 255-301 227-262 (268)
19 PRK10933 trehalose-6-phosphate 25.1 1.7E+02 0.0038 30.1 6.3 71 112-184 30-108 (551)
20 PF15322 PMSI1: Protein missin 21.4 50 0.0011 31.0 1.3 16 257-272 213-228 (311)
21 cd00350 rubredoxin_like Rubred 20.4 46 0.00099 20.5 0.6 25 283-307 3-29 (33)
22 PRK02228 V-type ATP synthase s 20.4 4.2E+02 0.009 20.6 7.1 42 155-199 54-95 (100)
No 1
>PRK06548 ribonuclease H; Provisional
Probab=99.93 E-value=3.2e-25 Score=190.24 Aligned_cols=128 Identities=21% Similarity=0.200 Sum_probs=96.6
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCCCCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCC--
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGPGPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNI-- 149 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~-- 149 (325)
.+.||||||+.+++++.|+|++....+....-...+||++|||+|++.||+.+.. ....|.|+|||++|+++++.|
T Consensus 5 ~~~IytDGa~~gnpg~~G~g~~~~~~~~~~g~~~~~TNnraEl~Aii~aL~~~~~--~~~~v~I~TDS~yvi~~i~~W~~ 82 (161)
T PRK06548 5 EIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIATRH--TDRPILILSDSKYVINSLTKWVY 82 (161)
T ss_pred EEEEEEeeccCCCCCceEEEEEEeCCcEEccCCCCCCHHHHHHHHHHHHHHhhhc--CCceEEEEeChHHHHHHHHHHHH
Confidence 3689999999999999999977653211111113589999999999999986643 446799999999999999952
Q ss_pred ------CC-C--hHHH-HHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCCC
Q psy11794 150 ------CF-S--HPFI-SKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRH 202 (325)
Q Consensus 150 ------~~-~--~~~~-~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~ 202 (325)
|. + +++. .++++.+..+... ..|+|.|||||+|++|||.||+||++|+....
T Consensus 83 ~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa~~~~ 144 (161)
T PRK06548 83 SWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAANNFS 144 (161)
T ss_pred HHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHHHHhc
Confidence 22 2 3443 3455544445433 47999999999999999999999999986544
No 2
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.2e-25 Score=186.84 Aligned_cols=130 Identities=20% Similarity=0.167 Sum_probs=102.6
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCCCCcc---CCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGPGPRY---FNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN 148 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~~~~l---~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~ 148 (325)
.++||||||+.+++|++|+|++..+-.....+ -..+||++||++|++.||+.+.+ .+...|.|+|||++|++.|+.
T Consensus 3 ~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~~tTNNraEl~A~i~AL~~l~~-~~~~~v~l~tDS~yv~~~i~~ 81 (154)
T COG0328 3 KVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEGRTTNNRAELRALIEALEALKE-LGACEVTLYTDSKYVVEGITR 81 (154)
T ss_pred ceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeeecccChHHHHHHHHHHHHHHHh-cCCceEEEEecHHHHHHHHHH
Confidence 35899999999999999999777632111111 12789999999999999999997 678999999999999999995
Q ss_pred C---CCC--------hHH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCCC
Q psy11794 149 I---CFS--------HPF-ISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRH 202 (325)
Q Consensus 149 ~---~~~--------~~~-~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~ 202 (325)
| |.. .|+ ...+++.+.++......|.+.|||||+|.++||+||+||+.|++...
T Consensus 82 w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~~ 147 (154)
T COG0328 82 WIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAARAAK 147 (154)
T ss_pred HHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHHHHhhh
Confidence 4 111 122 12455555556667779999999999999999999999999987653
No 3
>PRK08719 ribonuclease H; Reviewed
Probab=99.90 E-value=2.4e-23 Score=176.77 Aligned_cols=122 Identities=23% Similarity=0.145 Sum_probs=90.4
Q ss_pred cEEEEEcCCccCCCC---ceeEEEEEeec-C-----CCCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHH
Q psy11794 72 IFHIDTDTAYRLQEN---RYSCCYLGTLV-G-----PGPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSV 142 (325)
Q Consensus 72 ~~~IytDGS~~~~~~---~~g~a~i~~~~-g-----~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~a 142 (325)
.+.||||||+.++++ ++|+|++...- + ....+...+||++|||.|++.||+.+.+ . ..|+|||++|
T Consensus 4 ~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~-~----~~i~tDS~yv 78 (147)
T PRK08719 4 SYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARD-G----DVIYSDSDYC 78 (147)
T ss_pred eEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCC-C----CEEEechHHH
Confidence 468999999988876 46777654321 1 1112334579999999999999999865 2 3799999999
Q ss_pred HHHhc--------CCCCC---hHHH-HHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccC
Q psy11794 143 LSALG--------NICFS---HPFI-SKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTH 199 (325)
Q Consensus 143 i~~l~--------~~~~~---~~~~-~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~ 199 (325)
++.++ ++|.. .++. .++++.+..+.. ...|.|.|||||+|++|||.||+||++|++
T Consensus 79 i~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 79 VRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAAAE 146 (147)
T ss_pred HHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence 99994 33432 2221 345555555554 577999999999999999999999999875
No 4
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.89 E-value=2.7e-23 Score=177.09 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=93.3
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCCCCc---cCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCC
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGPGPR---YFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNI 149 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~~~~---l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~ 149 (325)
+.||||||+.++++.+|+|++....+.... .....||++|||.|++.||+.+.+ ...|.|+|||+++++.|+.|
T Consensus 4 v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~---~~~v~I~tDS~yvi~~i~~w 80 (150)
T PRK00203 4 VEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKE---PCEVTLYTDSQYVRQGITEW 80 (150)
T ss_pred EEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCC---CCeEEEEECHHHHHHHHHHH
Confidence 689999999999888888876643111100 123679999999999999998855 56899999999999999863
Q ss_pred --------CCC---hHHH-HHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCCC
Q psy11794 150 --------CFS---HPFI-SKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRH 202 (325)
Q Consensus 150 --------~~~---~~~~-~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~ 202 (325)
+.. .++. ..+++.+..+. ....|.|.|||||+|++||+.||+|||+|+....
T Consensus 81 ~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~-~~~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~~~ 144 (150)
T PRK00203 81 IHGWKKNGWKTADKKPVKNVDLWQRLDAAL-KRHQIKWHWVKGHAGHPENERCDELARAGAEEAT 144 (150)
T ss_pred HHHHHHcCCcccCCCccccHHHHHHHHHHh-ccCceEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 211 2221 12333333333 3378999999999999999999999999986543
No 5
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.89 E-value=2.8e-23 Score=171.85 Aligned_cols=116 Identities=32% Similarity=0.431 Sum_probs=90.9
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCC--CCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC--
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGP--GPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN-- 148 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~--~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~-- 148 (325)
+.||||||+.++++..|+|++. ..+. ...++ ..|+++|||.||..||+.+ . .+.|+|+|||+++++.+..
T Consensus 4 ~~iytDgS~~~~~~~~~~g~v~-~~~~~~~~~~~-~~s~~~aEl~Ai~~AL~~~-~---~~~v~I~tDS~~v~~~l~~~~ 77 (132)
T PF00075_consen 4 IIIYTDGSCRPNPGKGGAGYVV-WGGRNFSFRLG-GQSNNRAELQAIIEALKAL-E---HRKVTIYTDSQYVLNALNKWL 77 (132)
T ss_dssp EEEEEEEEECTTTTEEEEEEEE-ETTEEEEEEEE-SECHHHHHHHHHHHHHHTH-S---TSEEEEEES-HHHHHHHHTHH
T ss_pred EEEEEeCCccCCCCceEEEEEE-ECCeEEEeccc-ccchhhhheehHHHHHHHh-h---cccccccccHHHHHHHHHHhc
Confidence 5899999999888877878744 3322 12233 7899999999999999944 5 4999999999999998887
Q ss_pred ---CCCC---h-HHHHHHHHHHHHHHhcCCeEEEEEecCCCCC-ccchHHHHHHhccc
Q psy11794 149 ---ICFS---H-PFISKIYQLWKLIVTRGTDVVFLWCPSHCGI-DGNEAVDSAANHHT 198 (325)
Q Consensus 149 ---~~~~---~-~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi-~gNe~AD~LAk~aa 198 (325)
.+.. . ++..+|.+. + ..+..|.|.|||||+|+ .|||.||+|||+|+
T Consensus 78 ~~~~~~~~~~~~~i~~~i~~~---~-~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~ 131 (132)
T PF00075_consen 78 HGNGWKKTSNGRPIKNEIWEL---L-SRGIKVRFRWVPGHSGVPQGNERADRLAKEAA 131 (132)
T ss_dssp HHTTSBSCTSSSBHTHHHHHH---H-HHSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhheeec---c-ccceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence 3432 2 566655553 3 56899999999999999 69999999999986
No 6
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.81 E-value=2.1e-19 Score=148.79 Aligned_cols=124 Identities=18% Similarity=0.126 Sum_probs=96.1
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCCCCc---cCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGPGPR---YFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN 148 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~~~~---l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~ 148 (325)
+++||||||+.++++.+|+|++......... .....|++.||+.|++.||+.+.+ .+.++|.|+|||+.+++.+++
T Consensus 1 ~~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~aL~~a~~-~g~~~v~i~sDS~~vi~~~~~ 79 (128)
T PRK13907 1 MIEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTE-HNYNIVSFRTDSQLVERAVEK 79 (128)
T ss_pred CEEEEEeeCCCCCCCccEEEEEEEECCeeEEEEecccccCCcHHHHHHHHHHHHHHHh-CCCCEEEEEechHHHHHHHhH
Confidence 3689999999999999999987764221100 124579999999999999999998 677899999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCC
Q psy11794 149 ICFSHPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHP 200 (325)
Q Consensus 149 ~~~~~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~ 200 (325)
.+...+-...+.+.+..+...+..+.|.|||. +.|+.||.||+.|...
T Consensus 80 ~~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~a~~~ 127 (128)
T PRK13907 80 EYAKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARKAILQ 127 (128)
T ss_pred HHhcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHHHHhc
Confidence 76542222333443444556777888999996 5999999999998743
No 7
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.81 E-value=9e-19 Score=140.75 Aligned_cols=124 Identities=29% Similarity=0.267 Sum_probs=95.4
Q ss_pred EEEEcCCccCCCCceeEEEEEeecCC-----CCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC
Q psy11794 74 HIDTDTAYRLQENRYSCCYLGTLVGP-----GPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN 148 (325)
Q Consensus 74 ~IytDGS~~~~~~~~g~a~i~~~~g~-----~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~ 148 (325)
.+|||||+..+.+.+|+|++....+. ........+++.||+.|++.||+.+.. .+.+++.|++||+.+++.+++
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~-~~~~~i~i~~Ds~~~~~~~~~ 79 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALE-LGGKKVNIYTDSQYVINALTG 79 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHh-CCCceEEEEECHHHHHHHhhc
Confidence 37999999877778888876653211 111114679999999999999999987 788999999999999999998
Q ss_pred CCCC-hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhccc
Q psy11794 149 ICFS-HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHT 198 (325)
Q Consensus 149 ~~~~-~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa 198 (325)
.... .+....+...+..+...+..+.|.|||+|+|+++|+.||.|||.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 80 WYEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred cccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 7642 2222222233333446788999999999999999999999999874
No 8
>KOG3752|consensus
Probab=99.78 E-value=8e-19 Score=165.28 Aligned_cols=124 Identities=24% Similarity=0.239 Sum_probs=94.4
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCCCC------ccC-CCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHH
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGPGP------RYF-NLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSA 145 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~~~------~l~-~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~ 145 (325)
..||||||+.++......|+++.++|.+. ++. ..+++|+|||.||..||+-|++ .+..+|+|.|||+++++.
T Consensus 213 ~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~-~~~~kv~I~TDS~~~i~~ 291 (371)
T KOG3752|consen 213 QVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARS-KNINKVVIRTDSEYFINS 291 (371)
T ss_pred eEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHh-cCCCcEEEEechHHHHHH
Confidence 67999999998754434444555555544 444 7899999999999999999988 677899999999999999
Q ss_pred hcCCCC--------C---hH----------HHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccC
Q psy11794 146 LGNICF--------S---HP----------FISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTH 199 (325)
Q Consensus 146 l~~~~~--------~---~~----------~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~ 199 (325)
|+.|-. . ++ .+.++.++.+++ .+.+|.+.|||||.|+.|||.||.||++++.
T Consensus 292 l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~--~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs~ 364 (371)
T KOG3752|consen 292 LTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEI--SNKKVQQEYVGGHSGILGNEMADALARKGST 364 (371)
T ss_pred HHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhh--ccCceEEEEecCcCCcchHHHHHHHHhhhhh
Confidence 987521 1 22 222333322221 4689999999999999999999999999854
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.70 E-value=3e-16 Score=141.48 Aligned_cols=127 Identities=14% Similarity=0.072 Sum_probs=95.9
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeec-C-------CCCccCCCCchHHHHHHHHHHHHHHhHhhcCCc--eEEEEeccHH
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLV-G-------PGPRYFNLTTIYLAELLALYLCLKEISEFHSSS--RIAIISDSLS 141 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~-g-------~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~--~i~I~tDS~~ 141 (325)
.+.||+|||+.++++.+|+|++...- + ....+...+||+.||+.|++.||+.|.+ .+.+ .|.|++||+.
T Consensus 73 ~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e-~g~~~~~V~I~~DSql 151 (219)
T PRK07708 73 EILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEE-LGVKHEPVTFRGDSQV 151 (219)
T ss_pred cEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHH-cCCCcceEEEEeccHH
Confidence 46899999999999999988776531 1 1123445689999999999999999988 5554 4899999999
Q ss_pred HHHHhcCCCCC-hHHHHHHHHHHHHHH-hcCCeEEEEEecCCCCCccchHHHHHHhcccCCCCC
Q psy11794 142 VLSALGNICFS-HPFISKIYQLWKLIV-TRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRHV 203 (325)
Q Consensus 142 ai~~l~~~~~~-~~~~~~i~~~~~~l~-~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~~ 203 (325)
+++.+++.|.. ++....+.+.+..+. +....+.|.||| ++.|+.||+||++|.+...+
T Consensus 152 Vi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~Al~~~~~ 211 (219)
T PRK07708 152 VLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQALEGTVI 211 (219)
T ss_pred HHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHHHHhcCCC
Confidence 99999998765 444444444333333 334467889997 67899999999999986553
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.65 E-value=2e-15 Score=146.60 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=98.8
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCC-------CCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHH
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGP-------GPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSA 145 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~-------~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~ 145 (325)
++||||||+.++++.+|+|++...-.. ...+ ..+||+.||+.|++.||+.+.+ .+.++|.|++||+.+++.
T Consensus 3 ~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~-~~~tnn~AE~~All~gL~~a~~-~g~~~v~i~~DS~lvi~~ 80 (372)
T PRK07238 3 VVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAI-GRATNNVAEYRGLIAGLEAAAE-LGATEVEVRMDSKLVVEQ 80 (372)
T ss_pred EEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeeccc-CCCCchHHHHHHHHHHHHHHHh-CCCCeEEEEeCcHHHHHH
Confidence 589999999999999999987764211 1222 3678999999999999999998 678899999999999999
Q ss_pred hcCCCCC-hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCCC
Q psy11794 146 LGNICFS-HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRH 202 (325)
Q Consensus 146 l~~~~~~-~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~ 202 (325)
+++.+.. ++-...+.+.+..+.+++..+.|.|||. ++|+.||.||+.|.....
T Consensus 81 i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a~~~~~ 134 (372)
T PRK07238 81 MSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEAMDAAA 134 (372)
T ss_pred hCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHHHHhhc
Confidence 9987754 3333334444445667888999999995 699999999999975544
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.31 E-value=7.9e-12 Score=95.37 Aligned_cols=85 Identities=25% Similarity=0.176 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCCCCChHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccch
Q psy11794 109 IYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNE 188 (325)
Q Consensus 109 ~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~~~~~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe 188 (325)
+..||+.|++.||+.+.+ .+.++|.|+|||+.+++.|++..........+.+.+..+.+....+.|.||| .++|.
T Consensus 1 ~~~aE~~al~~al~~a~~-~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----r~~N~ 75 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWE-LGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP----REQNK 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHC-CT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------GGGSH
T ss_pred CcHHHHHHHHHHHHHHHH-CCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----hHHhH
Confidence 468999999999999998 7899999999999999999987543112223333333466788999999999 88999
Q ss_pred HHHHHHhccc
Q psy11794 189 AVDSAANHHT 198 (325)
Q Consensus 189 ~AD~LAk~aa 198 (325)
.||.|||.|.
T Consensus 76 ~A~~LA~~a~ 85 (87)
T PF13456_consen 76 VADALAKFAL 85 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999885
No 12
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=93.80 E-value=0.037 Score=42.30 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=24.5
Q ss_pred ccccCCCCCCCc-ccCC-CCCcccc-ccCCCch
Q psy11794 273 NHLFKKLPPPIC-QCGS-VLTVVHI-LECPTLT 302 (325)
Q Consensus 273 ~~r~~~~~sp~C-~Cg~-~et~~H~-~~Cp~~~ 302 (325)
+.+.+...++.| .|+. .||++|+ +.||...
T Consensus 51 l~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 51 LQRRGIQVDPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred hhccCCccCCccccCCCccccccceeccCcCcc
Confidence 344566678999 9997 9999999 9999753
No 13
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=85.31 E-value=4.2 Score=34.63 Aligned_cols=51 Identities=22% Similarity=0.135 Sum_probs=32.6
Q ss_pred cEEEEEcCCccCCCCceeEEEEEee----------cCCCCcc-C-CCCchHHHHHHHHHHHHHHhHh
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTL----------VGPGPRY-F-NLTTIYLAELLALYLCLKEISE 126 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~----------~g~~~~l-~-~~~s~~~AEl~Ai~~AL~~a~~ 126 (325)
.+++|+|+|. ...|++++... +....++ | ...|+-+-||+|+..|.+.+..
T Consensus 81 ~L~~F~DAS~----~aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~ 143 (159)
T PF05380_consen 81 ELHVFCDASE----SAYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANT 143 (159)
T ss_pred eeeEeecccc----cceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4689999994 33444433322 1111222 1 2459999999999999998764
No 14
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=55.86 E-value=21 Score=32.25 Aligned_cols=122 Identities=9% Similarity=0.023 Sum_probs=73.8
Q ss_pred EEEEcCCccCCCCceeEEEEEee-------cCCCCccCCCCchHHHHHHHHHHHHHHhHhhcCCceE-EEE----eccHH
Q psy11794 74 HIDTDTAYRLQENRYSCCYLGTL-------VGPGPRYFNLTTIYLAELLALYLCLKEISEFHSSSRI-AII----SDSLS 141 (325)
Q Consensus 74 ~IytDGS~~~~~~~~g~a~i~~~-------~g~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i-~I~----tDS~~ 141 (325)
.-+.+|++...++..+.-.+... +-..... ...++..+|.+|++.+|+.+.. .+.++. +++ .||++
T Consensus 67 i~~~~G~y~~~p~t~~~k~yr~k~~~~~~~lt~~~~~-~~~~n~s~d~la~ly~~~~~~~-~~nrk~~i~y~~~~~ds~a 144 (225)
T COG3341 67 ISWAKGDYDAKPGTQEFKEYRGKCTIEYSWLTESSEF-SIKSNDSGDVLAKLYGLRYEVP-LDNRKSVINYLTPGNDSWA 144 (225)
T ss_pred ceeccCCccccCCCcceeEEeccccccceeeeeeccc-ccccCchHHHHHHhcccccccc-ccCccceeeccCCcchhHH
Confidence 45788988776665553322210 1111111 2457889999999999999887 444444 447 79999
Q ss_pred HHHHhcCCCCC-hHHHH--HHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCCC
Q psy11794 142 VLSALGNICFS-HPFIS--KIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRH 202 (325)
Q Consensus 142 ai~~l~~~~~~-~~~~~--~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~ 202 (325)
..+-+.+-... -.+.. .+.. .-.+....+.|+.-|.++.-+..++.++........
T Consensus 145 ~~k~~k~~~~~k~~~~~~~e~~~-----~~~~v~h~~k~i~~~~~~~~~~~~~s~~~~~~k~~~ 203 (225)
T COG3341 145 YFKYVKDKCETKVNLLKDREFFS-----IGKGVFHDEKDINIHIWIFESKKGNSHVYNTSKKEL 203 (225)
T ss_pred HHHHHhhhhhhHHHHHHhHHhhh-----ccchhhhhhhhcccccccchhhhhhhhhhchhhhhc
Confidence 88877654321 11111 1111 112244556788889888888888888776665544
No 15
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=51.97 E-value=13 Score=33.30 Aligned_cols=61 Identities=31% Similarity=0.390 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCCCCChHHHHHHHHHHHHHHhcCCeEEEEEecCC
Q psy11794 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFSHPFISKIYQLWKLIVTRGTDVVFLWCPSH 181 (325)
Q Consensus 107 ~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~~~~~~~~~~i~~~~~~l~~~~~~i~~~WVpgH 181 (325)
-.++.|||+|.-.|.-+. ..++ |.|||..|+. +...+-++.......+ +. ..+.|..||+-
T Consensus 123 l~IhtaELlaaClAr~~~-----~~r~-l~tDnt~Vls---rkyts~PW~lac~A~w--iL---rgts~~yVPS~ 183 (245)
T PF00336_consen 123 LPIHTAELLAACLARLMS-----GARC-LGTDNTVVLS---RKYTSFPWLLACAANW--IL---RGTSFYYVPSK 183 (245)
T ss_pred ccchHHHHHHHHHHHhcc-----CCcE-EeecCcEEEe---cccccCcHHHHHHHHH--hh---cCceEEEeccc
Confidence 378999999998877665 3344 9999988652 2333333322222211 22 25678889954
No 16
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=45.81 E-value=28 Score=36.53 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=43.3
Q ss_pred HHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCCCCC--------hH--HHHHHHHHHHHHHhcCCeEEEEEecCCCCCc
Q psy11794 116 ALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFS--------HP--FISKIYQLWKLIVTRGTDVVFLWCPSHCGID 185 (325)
Q Consensus 116 Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~~~~--------~~--~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~ 185 (325)
++.+=|.++++ .+...|.+.-=++..-+ .+|.-. +. --..+...+..+.+.|+.|.+-|||+|.+..
T Consensus 166 ~a~~llpYl~e-lG~T~IELMPv~e~p~~--~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d 242 (628)
T COG0296 166 LAIELLPYLKE-LGITHIELMPVAEHPGD--RSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD 242 (628)
T ss_pred HHHHHhHHHHH-hCCCEEEEcccccCCCC--CCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC
Confidence 44555777777 57777766543322110 111100 00 1124555566677899999999999999998
Q ss_pred cchHH
Q psy11794 186 GNEAV 190 (325)
Q Consensus 186 gNe~A 190 (325)
||-.+
T Consensus 243 ~~~L~ 247 (628)
T COG0296 243 GNYLA 247 (628)
T ss_pred cchhh
Confidence 88654
No 17
>KOG1812|consensus
Probab=45.07 E-value=62 Score=31.86 Aligned_cols=90 Identities=20% Similarity=0.071 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCCCCC-hH-HHHHHHHHHHHHHhcCCeEEEEEecCCCCC
Q psy11794 107 TTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFS-HP-FISKIYQLWKLIVTRGTDVVFLWCPSHCGI 184 (325)
Q Consensus 107 ~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~~~~-~~-~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi 184 (325)
.+...||++|+..+|..+.+ .+...+.+++|+......+.+.... .. .+..+.+....+..+.....-+-||- .
T Consensus 47 ~~~~~ae~~al~~~l~ea~~-~~~~~~~~~~d~~~~~~~v~~~~~~~~~~~~~~l~~~v~~~r~~l~~~~~i~~~~---~ 122 (384)
T KOG1812|consen 47 ITPLEAELMALKRGLTEALE-LGLNHIVIYCDDELIYESVAGREKPEQHRKIVLLVELVQRIREQLTSSEPILVPK---N 122 (384)
T ss_pred cchhhHHHHHHhhccHHHHh-hccccceEecccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhcccceeccc---c
Confidence 67899999999999999998 7899999999977666655544333 22 23333333333332222222222321 0
Q ss_pred ccchHHHHHHhcccCC
Q psy11794 185 DGNEAVDSAANHHTHP 200 (325)
Q Consensus 185 ~gNe~AD~LAk~aa~~ 200 (325)
.....|=.||+++...
T Consensus 123 ~d~~~~~~lA~e~i~s 138 (384)
T KOG1812|consen 123 ADIKFAYKLAREAIVS 138 (384)
T ss_pred hhhHHHHHHHHHhhcc
Confidence 1113466777777753
No 18
>KOG1994|consensus
Probab=38.32 E-value=15 Score=33.34 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=25.3
Q ss_pred hhhhhhhhhhccccccccccccCCCCCCCc-ccCC-CCCcccc-ccCCCc
Q psy11794 255 YEEVVLTRLRIGHTRVTHNHLFKKLPPPIC-QCGS-VLTVVHI-LECPTL 301 (325)
Q Consensus 255 ~~~~~L~qlRTGH~~l~h~~r~~~~~sp~C-~Cg~-~et~~H~-~~Cp~~ 301 (325)
+...++.-||.||.+ | +||. .+|.+-+ -+||--
T Consensus 227 ~lt~in~~LR~eh~Y--------------C~fCG~~y~~~edl~ehCPGv 262 (268)
T KOG1994|consen 227 RLTKINIFLRSEHYY--------------CFFCGIKYKDEEDLYEHCPGV 262 (268)
T ss_pred HHHHHHHHHhccceE--------------EEEeccccCCHHHHHHhCCCC
Confidence 335566777777644 7 9999 8999999 999964
No 19
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=25.09 E-value=1.7e+02 Score=30.13 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhHhhcCCceEEEEe-------ccHHHHHHhcCCCCC-hHHHHHHHHHHHHHHhcCCeEEEEEecCCCC
Q psy11794 112 AELLALYLCLKEISEFHSSSRIAIIS-------DSLSVLSALGNICFS-HPFISKIYQLWKLIVTRGTDVVFLWCPSHCG 183 (325)
Q Consensus 112 AEl~Ai~~AL~~a~~~~~~~~i~I~t-------DS~~ai~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~g 183 (325)
+.+.+|...|.++.+ .+...|.|-. |.-+.+.-.....+. +. ...+.++++.+.++|.+|.+-.|+-|++
T Consensus 30 Gdl~gi~~~ldyl~~-lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt-~~d~~~lv~~~h~~gi~vilD~V~NH~s 107 (551)
T PRK10933 30 GDLRGVTQRLDYLQK-LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGT-LDDFDELVAQAKSRGIRIILDMVFNHTS 107 (551)
T ss_pred cCHHHHHHhhHHHHh-CCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCC-HHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 468899999999988 6777666522 222211111100111 11 2356666777889999999999999997
Q ss_pred C
Q psy11794 184 I 184 (325)
Q Consensus 184 i 184 (325)
.
T Consensus 108 ~ 108 (551)
T PRK10933 108 T 108 (551)
T ss_pred C
Confidence 5
No 20
>PF15322 PMSI1: Protein missing in infertile sperm 1, putative
Probab=21.38 E-value=50 Score=30.97 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=13.4
Q ss_pred hhhhhhhhcccccccc
Q psy11794 257 EVVLTRLRIGHTRVTH 272 (325)
Q Consensus 257 ~~~L~qlRTGH~~l~h 272 (325)
...|.||||-|-..+|
T Consensus 213 vGALsqLrTehrPCtY 228 (311)
T PF15322_consen 213 VGALSQLRTEHRPCTY 228 (311)
T ss_pred cchhhhhhhccCCccc
Confidence 5679999999998874
No 21
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.41 E-value=46 Score=20.48 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=15.2
Q ss_pred Cc-ccCCCCCcccc-ccCCCchHHHHh
Q psy11794 283 IC-QCGSVLTVVHI-LECPTLTPARIS 307 (325)
Q Consensus 283 ~C-~Cg~~et~~H~-~~Cp~~~~~R~~ 307 (325)
.| .||..-+.++- +.||.-...+..
T Consensus 3 ~C~~CGy~y~~~~~~~~CP~Cg~~~~~ 29 (33)
T cd00350 3 VCPVCGYIYDGEEAPWVCPVCGAPKDK 29 (33)
T ss_pred ECCCCCCEECCCcCCCcCcCCCCcHHH
Confidence 36 67775455556 777776555544
No 22
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=20.41 E-value=4.2e+02 Score=20.59 Aligned_cols=42 Identities=5% Similarity=0.018 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccC
Q psy11794 155 FISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTH 199 (325)
Q Consensus 155 ~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~ 199 (325)
+...+.+.++.+......-.+.-+||+. |++..+++.++|..
T Consensus 54 ~~~~i~e~i~~~~~~~~~P~ii~IP~~~---~~~~i~~~v~raIG 95 (100)
T PRK02228 54 DLEKLPRRLRRTLEESVEPTVVTLGGGG---GSGGLREKIKRAIG 95 (100)
T ss_pred HhHhhHHHHHHHHhcCCCCEEEEECCCc---cchHHHHHHHHHhC
Confidence 3444555555544444444455679754 56788888888764
Done!