Query psy11794
Match_columns 325
No_of_seqs 230 out of 1761
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:08:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.9 4.4E-25 1.5E-29 187.0 11.8 123 72-200 12-147 (150)
2 3h08_A RNH (ribonuclease H); R 99.9 4.3E-25 1.5E-29 185.7 10.2 120 72-200 4-144 (146)
3 2qkb_A Ribonuclease H1, HS-RNA 99.9 2.9E-24 1E-28 182.4 15.1 125 71-201 6-152 (154)
4 1jl1_A Ribonuclease HI; RNAse 99.9 1.4E-24 4.6E-29 184.8 9.8 122 73-203 5-146 (155)
5 2lsn_A Reverse transcriptase; 99.9 3.6E-24 1.2E-28 184.0 12.0 131 67-199 2-162 (165)
6 2kq2_A Ribonuclease H-related 99.9 1.6E-25 5.6E-30 189.0 3.2 125 72-203 6-140 (147)
7 2e4l_A Ribonuclease HI, RNAse 99.9 2.4E-24 8.3E-29 183.8 8.8 120 72-200 6-145 (158)
8 3p1g_A Xenotropic murine leuke 99.9 7.6E-24 2.6E-28 182.0 11.3 123 72-202 23-158 (165)
9 1ril_A Ribonuclease H; hydrola 99.9 5.4E-24 1.9E-28 183.1 8.9 123 72-202 8-150 (166)
10 3hst_B Protein RV2228C/MT2287; 99.9 3.3E-22 1.1E-26 166.2 13.2 123 73-200 4-133 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.9 3.2E-22 1.1E-26 165.6 9.7 121 73-199 4-136 (140)
12 2ehg_A Ribonuclease HI; RNAse 99.8 3.7E-21 1.3E-25 162.0 10.5 122 73-200 2-134 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 1.1E-20 3.8E-25 190.9 12.2 117 72-198 436-555 (555)
14 2zd1_A Reverse transcriptase/r 99.8 1.5E-20 5.1E-25 190.0 9.8 115 73-197 440-557 (557)
15 1zbf_A Ribonuclease H-related 99.6 1.6E-15 5.6E-20 126.8 4.8 117 71-192 10-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.4 2E-13 6.9E-18 112.5 7.3 94 73-169 6-112 (134)
17 1rw3_A POL polyprotein; RNA an 86.7 0.17 5.9E-06 49.0 0.9 42 106-148 386-427 (455)
18 2zd1_B P51 RT; P51/P66, hetero 35.0 25 0.00084 33.5 3.4 37 107-143 360-400 (428)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.92 E-value=4.4e-25 Score=186.98 Aligned_cols=123 Identities=23% Similarity=0.273 Sum_probs=92.1
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCCCCcc-CCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCCC
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGPGPRY-FNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNIC 150 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~~~~l-~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~~ 150 (325)
.+.||||||+.++++.+|+|++... +....+ ...+||++||+.|++.||+.+ ..+|.|+|||++|++.|++|.
T Consensus 12 ~~~iytDGs~~~n~g~~g~G~v~~~-~~~~~~~~~~~Tnn~aEl~A~i~AL~~~-----~~~v~i~tDS~~v~~~i~~w~ 85 (150)
T 3qio_A 12 AETFYVDGAANRETKLGKAGYVTNR-GRQKVVTLTDTTNQKTELQAIYLALQDS-----GLEVNIVTDSQYALGIITQWI 85 (150)
T ss_dssp CEEEEEEEEECTTTCCEEEEEEETT-SCEEEEEESSCCHHHHHHHHHHHHHHHS-----CSEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEEccCCCCCCCCeEEEEEEEc-CCEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCcEEEEeCcHHHHHHHHHHH
Confidence 4689999999999998888876542 111111 147899999999999999985 479999999999999998751
Q ss_pred --------CC---hHHH-HHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCC
Q psy11794 151 --------FS---HPFI-SKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHP 200 (325)
Q Consensus 151 --------~~---~~~~-~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~ 200 (325)
.. .++. ..+++.+..+...+..|.|.|||||+|++|||.||+||++|++.
T Consensus 86 ~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 86 HNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 11 1111 12222222233468899999999999999999999999999875
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.92 E-value=4.3e-25 Score=185.72 Aligned_cols=120 Identities=21% Similarity=0.108 Sum_probs=92.4
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCC----CCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhc
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGP----GPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALG 147 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~----~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~ 147 (325)
.+.||||||+.++++.+|+|++....+. ...+ ..+||++||+.|++.||+.+.+ ..+|.|+|||++|++.|+
T Consensus 4 ~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~---~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 4 TITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE---PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS---CCEEEEEESCHHHHHHHH
T ss_pred eEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc---cCcEEEEeChHHHHHHHH
Confidence 3689999999999888898877654221 1112 3579999999999999999965 689999999999999998
Q ss_pred CCC---------CC--------hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCC
Q psy11794 148 NIC---------FS--------HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHP 200 (325)
Q Consensus 148 ~~~---------~~--------~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~ 200 (325)
+.| .. .++...|.+ +.. ...|.|.|||||+|+++||.||+|||+|+..
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~----~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILK----LTT-LHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHH----HHH-HSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHH----HHh-hCceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 821 11 345444444 322 2479999999999999999999999999854
No 3
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.92 E-value=2.9e-24 Score=182.35 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=95.2
Q ss_pred ccEEEEEcCCccCCCCc---eeEEEEEeecC---CCCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHH
Q psy11794 71 FIFHIDTDTAYRLQENR---YSCCYLGTLVG---PGPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLS 144 (325)
Q Consensus 71 ~~~~IytDGS~~~~~~~---~g~a~i~~~~g---~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~ 144 (325)
..+.||||||+.++++. +|+|++...-. ....+++.+||++||+.|++.||+.+.+ .+.++|.|+|||++|++
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~-~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT-QNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHH-TTCCEEEEEESCHHHHH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHh-CCCceEEEEECcHHHHh
Confidence 35689999999988754 56665543210 1123445689999999999999999987 67789999999999999
Q ss_pred HhcCC--------CCC--------hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCC
Q psy11794 145 ALGNI--------CFS--------HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPR 201 (325)
Q Consensus 145 ~l~~~--------~~~--------~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~ 201 (325)
.|+++ |.. .+++.+|.+ +. .+..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 85 ~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~----l~-~~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 85 GITNWVQGWKKNGWKTSAGKEVINKEDFVALER----LT-QGMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHH----HH-TTCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhccccccCCCccccHHHHHHHHH----HH-cCCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 99874 211 234444433 33 256799999999999999999999999998764
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.91 E-value=1.4e-24 Score=184.80 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=95.4
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCCC----CccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGPG----PRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN 148 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~~----~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~ 148 (325)
+.||||||+.++++.+|+|++....+.. ..+ +.+||++||+.|++.||+.+.+ ..+|.|+|||++|++.|++
T Consensus 5 ~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~---~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 5 VEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE---HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp EEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS---CCEEEEEECCHHHHHHHHT
T ss_pred EEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc---CCcEEEEeCHHHHHHHHHH
Confidence 5899999999998888888776542211 112 3578999999999999999975 4899999999999999997
Q ss_pred C--------CCC--------hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCCCC
Q psy11794 149 I--------CFS--------HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRHV 203 (325)
Q Consensus 149 ~--------~~~--------~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~~ 203 (325)
| +.. .++...|. .+. ....|.|.|||||+|++|||.||+|||+|+..+.+
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~----~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLD----AAL-GQHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHH----HHT-TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHH----HHH-ccCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 3 211 23333333 343 34699999999999999999999999999987664
No 5
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.91 E-value=3.6e-24 Score=184.01 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=93.6
Q ss_pred hcccccEEEEEcCCccCCCCc-----eeEEEEEeecCCCCc------c-CCCCchHHHHHHHHHHHHHHhHhhcCCceEE
Q psy11794 67 VMQLFIFHIDTDTAYRLQENR-----YSCCYLGTLVGPGPR------Y-FNLTTIYLAELLALYLCLKEISEFHSSSRIA 134 (325)
Q Consensus 67 ~~~~~~~~IytDGS~~~~~~~-----~g~a~i~~~~g~~~~------l-~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~ 134 (325)
.|.++.+.|||||||.+|+|+ +|+|++....+.... . .+..+++.||+.|+..||+.+.+ ...+|.
T Consensus 2 ~m~~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~--~~~~v~ 79 (165)
T 2lsn_A 2 AMGQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALK--IPGPVL 79 (165)
T ss_dssp TTCCCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHH--SSSCEE
T ss_pred CCCCceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhc--CCCeEE
Confidence 355677899999999999886 777776654333221 1 24567888888888888888766 346899
Q ss_pred EEeccHHHHHHhcCC--------CCC---hHHH-HHHHHHHHHHHhcCCeEEEEEecCCCCC------ccchHHHHHHhc
Q psy11794 135 IISDSLSVLSALGNI--------CFS---HPFI-SKIYQLWKLIVTRGTDVVFLWCPSHCGI------DGNEAVDSAANH 196 (325)
Q Consensus 135 I~tDS~~ai~~l~~~--------~~~---~~~~-~~i~~~~~~l~~~~~~i~~~WVpgH~gi------~gNe~AD~LAk~ 196 (325)
|+|||++|++.|+.| |.. .++. ..+++.+.++......|.|.|||||+|+ +|||+||+||++
T Consensus 80 I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~ 159 (165)
T 2lsn_A 80 VITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQ 159 (165)
T ss_dssp EEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHH
T ss_pred EEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHH
Confidence 999999999999763 211 1111 1222323334445678999999999995 689999999999
Q ss_pred ccC
Q psy11794 197 HTH 199 (325)
Q Consensus 197 aa~ 199 (325)
|+.
T Consensus 160 gA~ 162 (165)
T 2lsn_A 160 GSY 162 (165)
T ss_dssp HHH
T ss_pred hhh
Confidence 984
No 6
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.91 E-value=1.6e-25 Score=188.96 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=97.1
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCC-------CCccCC--CCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHH
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGP-------GPRYFN--LTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSV 142 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~-------~~~l~~--~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~a 142 (325)
.+.||||||+.+ +++|+|++....+. +...+. .+||++||+.|++.||+.+.+ .+. +|.|+|||+.+
T Consensus 6 ~i~iytDGs~~~--g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~-~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 6 EYDVYTDGSYVN--GQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQ-LGV-KIRILHDYAGI 81 (147)
T ss_dssp CCEEECCCCCBT--TBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHH-HTC-CCCBSSCCSTH
T ss_pred eEEEEECCCCCC--CCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHH-CCC-eEEEEECcHHH
Confidence 458999999987 88888877653221 111122 369999999999999999877 455 99999999999
Q ss_pred HHHhcCCCCC-hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCCCC
Q psy11794 143 LSALGNICFS-HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRHV 203 (325)
Q Consensus 143 i~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~~ 203 (325)
.+.+.+.|.. .+....+.++++++.. .|.|.|||||+|++|||.||+|||+|+....+
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 9888887765 4444455555555433 89999999999999999999999999987653
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.90 E-value=2.4e-24 Score=183.82 Aligned_cols=120 Identities=21% Similarity=0.234 Sum_probs=93.9
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCC----CCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhc
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGP----GPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALG 147 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~----~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~ 147 (325)
.+.||||||+.++++.+|+|++...-+. ...+ ..+||++||+.|++.||+.+.+ ..+|.|+|||++|++.|+
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~---~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE---PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS---CCEEEEEECCHHHHHHHH
T ss_pred eEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc---CCeEEEEeCHHHHHHHHH
Confidence 3689999999998888888877654221 1112 3579999999999999999865 389999999999999998
Q ss_pred C--------CCCC--------hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCC
Q psy11794 148 N--------ICFS--------HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHP 200 (325)
Q Consensus 148 ~--------~~~~--------~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~ 200 (325)
+ .+.. .++...|.+ +.. ...|.|.|||||+|+++||.||+|||+|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~----l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDK----AAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHH----HHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHH----HHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 8 3321 234333333 333 4699999999999999999999999999976
No 8
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.90 E-value=7.6e-24 Score=182.05 Aligned_cols=123 Identities=21% Similarity=0.142 Sum_probs=94.6
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCCC---CccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGPG---PRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN 148 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~~---~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~ 148 (325)
.+.||||||+.+++|.+|+|++...-+.. ..++..+||++||+.|++.||+.+ . ..+|.|+|||+++++.+-.
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~---~~~v~I~tDS~~vi~~iw~ 98 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E---GKKLNVYTDSRYAFATAHV 98 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B---TSEEEEEECCHHHHHHHHS
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c---CceEEEEEchHHHHhhhhc
Confidence 57999999999998988888766542221 123457899999999999999998 3 6899999999999999821
Q ss_pred CCCC-----hHHHHHHHHHHHHHHhcCCeEEEEEecCCCC-----CccchHHHHHHhcccCCCC
Q psy11794 149 ICFS-----HPFISKIYQLWKLIVTRGTDVVFLWCPSHCG-----IDGNEAVDSAANHHTHPRH 202 (325)
Q Consensus 149 ~~~~-----~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~g-----i~gNe~AD~LAk~aa~~~~ 202 (325)
.... .+++.++.+ ++ ..+..|.|.|||||+| ++|||.||+|||+|+....
T Consensus 99 ~~~g~~v~n~dl~~~l~~---~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 99 HSEGREIKNKNEILALLK---AL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp CCCSCCCSSHHHHHHHHH---HT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccCHHHHHHHHH---HH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 1111 333333322 22 3678999999999999 9999999999999997654
No 9
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.90 E-value=5.4e-24 Score=183.15 Aligned_cols=123 Identities=20% Similarity=0.118 Sum_probs=94.9
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCCCCcc---CCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGPGPRY---FNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN 148 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~~~~l---~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~ 148 (325)
.+.||||||+.++++.+|+|++...-+....+ ...+||++||+.|++.||+.+.+ ..+|.|+|||++|++.|++
T Consensus 8 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~---~~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 8 RVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE---PCEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp CCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS---CCEEEEECCCHHHHHHHHS
T ss_pred cEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc---CCeEEEEeChHHHHHHHhh
Confidence 35899999999988888888776542211111 13579999999999999999865 4699999999999999998
Q ss_pred -C--------CCC--------hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCCC
Q psy11794 149 -I--------CFS--------HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRH 202 (325)
Q Consensus 149 -~--------~~~--------~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~ 202 (325)
| |.. .+++..|.+ +.. ...|.|.|||||+|+++||.||+|||+|+....
T Consensus 85 ~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~----l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 85 GWLEGWRKRGWRTAEGKPVKNRDLWEALLL----AMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SHHHHHHHTTSBCTTSSBCTTHHHHHHHHH----HHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hHHHHHHhcccccccCCccCcHHHHHHHHH----HHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 2 221 234444433 333 369999999999999999999999999998765
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.88 E-value=3.3e-22 Score=166.16 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=98.4
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCCCC------ccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHh
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGPGP------RYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSAL 146 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~~~------~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l 146 (325)
+.||||||+.++++.+|+|++......+. ...+.+||++||+.|++.||+.+.+ .+.++|.|+|||+++++.+
T Consensus 4 ~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~-~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 4 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK-LGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHH-HTCSEEEEEESCHHHHHHH
T ss_pred EEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHH-CCCceEEEEeChHHHHHHH
Confidence 58999999999988899887776432111 1113679999999999999999988 6788999999999999999
Q ss_pred cCCCCC-hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCC
Q psy11794 147 GNICFS-HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHP 200 (325)
Q Consensus 147 ~~~~~~-~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~ 200 (325)
++.|.. .+.+..+.+.+..+...+..|.|.|||+ ++|+.||+|||+|+..
T Consensus 83 ~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 83 SGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp TTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred hCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 997654 4444445555555666789999999994 7999999999998754
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.87 E-value=3.2e-22 Score=165.63 Aligned_cols=121 Identities=20% Similarity=0.190 Sum_probs=93.3
Q ss_pred EEEEEcCCccCCCCceeEEEEEee-cCC-----CCccCCCCchHHHHHHHHHHHHHHhHhhcCCc----eEEEEeccHHH
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTL-VGP-----GPRYFNLTTIYLAELLALYLCLKEISEFHSSS----RIAIISDSLSV 142 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~-~g~-----~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~----~i~I~tDS~~a 142 (325)
+.||||||+.++++++|+|++... .|. ...+ +.+||++||+.|++.||+.+.+ .+.+ +|.|+|||+++
T Consensus 4 ~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~-~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 4 IIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQM-FGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp EEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGG-GGGGGTTCEEEEEESCHHH
T ss_pred EEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHH-cCCCCCCceEEEEeChHHH
Confidence 689999999999888898877654 111 1112 3579999999999999999987 5566 99999999999
Q ss_pred HHHhcCCCCC-hHHHHHHHHHHHHH-HhcCCeEEEEEecCCCCCccchHHHHHHhcccC
Q psy11794 143 LSALGNICFS-HPFISKIYQLWKLI-VTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTH 199 (325)
Q Consensus 143 i~~l~~~~~~-~~~~~~i~~~~~~l-~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~ 199 (325)
++.+++++.. .+-+..+.+.+..+ ..+...|.|.||| .++||.||+|||+|+.
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAID 136 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHH
Confidence 9999998754 22222233333345 5566799999999 4899999999999874
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.85 E-value=3.7e-21 Score=161.99 Aligned_cols=122 Identities=14% Similarity=0.069 Sum_probs=91.7
Q ss_pred EEEEEcCCcc-CCCCceeE-EEEEeecCCC-----Cc---cCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHH
Q psy11794 73 FHIDTDTAYR-LQENRYSC-CYLGTLVGPG-----PR---YFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSV 142 (325)
Q Consensus 73 ~~IytDGS~~-~~~~~~g~-a~i~~~~g~~-----~~---l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~a 142 (325)
+.||||||+. ++++++|+ |++...-|.. .. ....+||++||+.|++.||+.+.+ .+.++|.|+|||+++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~-~g~~~v~i~tDS~~v 80 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLR-LGISSPIIKGDSQLV 80 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHH-HTCCSCEEEESCHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHH-cCCCEEEEEeChHHH
Confidence 5799999999 78888885 8766542211 01 113789999999999999999988 677899999999999
Q ss_pred HHHhcCCCCC-hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCC
Q psy11794 143 LSALGNICFS-HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHP 200 (325)
Q Consensus 143 i~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~ 200 (325)
++.++++|.. .+....+.+.+..+.+.. +|.|.|||+| +|+.||+|||+|+..
T Consensus 81 i~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~----~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 81 IKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPRE----ENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGG----GCHHHHHHHHHHHHH
T ss_pred HHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCc----ccHHHHHHHHHHHHh
Confidence 9999998754 222223333333333333 5999999984 999999999999854
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.83 E-value=1.1e-20 Score=190.87 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=93.3
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCCCCc-cCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCCC
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGPGPR-YFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNIC 150 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~~~~-l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~~ 150 (325)
.+.||||||+.+++|.+|+|++... +.+.. -...+||++||+.|++.||+. ...+|.|+|||++|++.+++|.
T Consensus 436 ~~~iytDGs~~~n~g~~g~G~v~~~-~~~~~~~~~~~TNn~aEl~A~i~aL~~-----~~~~v~I~tDS~~v~~~i~~~~ 509 (555)
T 1mu2_A 436 AETFYTDGSCNRQSKEGKAGYVTDR-GKDKVKKLEQTTNQQAELEAFAMALTD-----SGPKVNIIVDSQYVMGIVASQP 509 (555)
T ss_dssp CEEEEEEEEECTTTCCEEEEEEETT-SCEEEEEESSCCHHHHHHHHHHHHHHT-----SCSEEEEEESCHHHHHHHHTCC
T ss_pred ceEEEEcccccCCCCCceEEEEEEe-CCEeeccCCCCCHHHHHHHHHHHHHHc-----CCCeEEEEEehHHHHHHHhccc
Confidence 3689999999999888888876643 21111 114689999999999999997 3679999999999999999975
Q ss_pred CC--hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhccc
Q psy11794 151 FS--HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHT 198 (325)
Q Consensus 151 ~~--~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa 198 (325)
.. .++..++.+. ...+..|.|.|||||+|++|||.||+|||+|+
T Consensus 510 ~~~~~~l~~~~~~~----~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 510 TESESKIVNQIIEE----MIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp SEESCHHHHHHHHH----HHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHH----hccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 43 6666655442 23468899999999999999999999999985
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.82 E-value=1.5e-20 Score=189.99 Aligned_cols=115 Identities=24% Similarity=0.333 Sum_probs=90.3
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCCCCcc-CCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCCCC
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGPGPRY-FNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICF 151 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~~~~l-~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~~~ 151 (325)
+.||||||+.+++|.+|+|++.. .+....+ ...+||++||+.|++.||+.+ ..+|.|+|||++|++.++++..
T Consensus 440 ~~iytDGs~~~n~g~~g~g~v~~-~~~~~~~~~~~~TNn~aEl~Ai~~aL~~~-----~~~v~I~tDS~~vi~~i~~~~~ 513 (557)
T 2zd1_A 440 ETFYVDGAANRETKLGKAGYVTN-KGRQKVVPLTNTTNQKTELQAIYLALQDS-----GLEVNIVTDSQYALGIIQAQPD 513 (557)
T ss_dssp CEEEEEEEECTTTCCEEEEEEET-TSCEEEEEECSCCHHHHHHHHHHHHHHHS-----CSEEEEEECCHHHHHHHTTCCS
T ss_pred EEEEEccCCCCCCCceEEEEEEE-CCcEEEecCCCCCHHHHHHHHHHHHHHhC-----CCcEEEEeChHHHHHHHhcCCc
Confidence 58999999999988888887664 2221111 146899999999999999998 4799999999999999999765
Q ss_pred C--hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcc
Q psy11794 152 S--HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHH 197 (325)
Q Consensus 152 ~--~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~a 197 (325)
. .++..++.+ .+. ....|.|.|||||+|++|||.||+|||+|
T Consensus 514 ~~~~~l~~~~~~---~l~-~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 514 KSESELVNQIIE---QLI-KKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp EESSHHHHHHHH---HHH-HCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred cCCHHHHHHHHH---HHh-cCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 5 566655544 233 35689999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.56 E-value=1.6e-15 Score=126.78 Aligned_cols=117 Identities=15% Similarity=0.029 Sum_probs=86.9
Q ss_pred ccEEEEEcCCccCCCCceeEEEEEeecCC----CCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHh
Q psy11794 71 FIFHIDTDTAYRLQENRYSCCYLGTLVGP----GPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSAL 146 (325)
Q Consensus 71 ~~~~IytDGS~~~~~~~~g~a~i~~~~g~----~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l 146 (325)
..+.||||||+.+++|++|+|++...-|. +..+ ..+||++||++|++.||+.+.+ .+. +|.|+|||++|++.+
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~-~~~TNN~aEl~A~i~aL~~~~~-~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKE-RNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHHHHH-TTC-CCCEEESCHHHHHHH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEeccc-CCcCcHHHHHHHHHHHHHHHHh-CCC-eEEEEEehHHHHHHH
Confidence 45689999999999999999877652211 1122 2579999999999999999988 455 999999999999999
Q ss_pred cCCCCC---------hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHH
Q psy11794 147 GNICFS---------HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDS 192 (325)
Q Consensus 147 ~~~~~~---------~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~ 192 (325)
++.+.+ .++...|.++...+... .+....|+-|++.-||.-||.
T Consensus 87 ~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 87 KDKKAKSTLVRNEETALIWKLVDEAEEWLNTH--TYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTCC
T ss_pred HcCCccCCCCCCcccHHHHHHHHHHHHHHhhC--CCceeEEEeccCccCcCcccc
Confidence 987621 34555554444444443 445556888998889998884
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.42 E-value=2e-13 Score=112.51 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=66.9
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCCC----CccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGPG----PRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN 148 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~~----~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~ 148 (325)
..||||||+.+|+|++|+|++....+.. ..+ +.+||++||++|++.||+.+.+ .+. ++.|+|||++|++.|.+
T Consensus 6 ~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~-~~~-~v~i~tDSqyVi~wi~~ 82 (134)
T 4htu_A 6 ESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKE-RNS-RKPIYSNSQTAIKWVKD 82 (134)
T ss_dssp SSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHH-TTC-CCCEEESCHHHHHHHHH
T ss_pred eEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHh-CCC-CEEEEcchHHHHHHHHc
Confidence 3789999999999999986554321110 112 3689999999999999999987 443 48999999999999987
Q ss_pred CCCC---------hHHHHHHHHHHHHHHhc
Q psy11794 149 ICFS---------HPFISKIYQLWKLIVTR 169 (325)
Q Consensus 149 ~~~~---------~~~~~~i~~~~~~l~~~ 169 (325)
+.-+ .++...+.++...|...
T Consensus 83 ~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~ 112 (134)
T 4htu_A 83 KKAKSTLVRNEETALIWKLVDEAEEWLNTH 112 (134)
T ss_dssp TCCCCCCCCSSTTHHHHHHHHHHHHHHHHC
T ss_pred CCcccCCCCCccCHHHHHHHHHHHHHHHhC
Confidence 5211 34555555544445433
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=86.70 E-value=0.17 Score=49.03 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=33.5
Q ss_pred CCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC
Q psy11794 106 LTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN 148 (325)
Q Consensus 106 ~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~ 148 (325)
..+.++.|++||..|++.........+++|+||+. ++..+.+
T Consensus 386 ~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~ 427 (455)
T 1rw3_A 386 GWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQ 427 (455)
T ss_dssp SSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCC
Confidence 35678999999999999887655567999999997 6655554
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=35.04 E-value=25 Score=33.50 Aligned_cols=37 Identities=8% Similarity=-0.157 Sum_probs=25.6
Q ss_pred CchHHHHHHH-HHHHHHHhHhh---cCCceEEEEeccHHHH
Q psy11794 107 TTIYLAELLA-LYLCLKEISEF---HSSSRIAIISDSLSVL 143 (325)
Q Consensus 107 ~s~~~AEl~A-i~~AL~~a~~~---~~~~~i~I~tDS~~ai 143 (325)
...+.-|++| ++.||+.-... .....++++||.+...
T Consensus 360 y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~ 400 (428)
T 2zd1_B 360 AHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET 400 (428)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHH
T ss_pred cccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHH
Confidence 4456677777 99999865543 2346778899998643
Done!