Query psy11794
Match_columns 325
No_of_seqs 230 out of 1761
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 19:08:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11794.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11794hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a1 c.55.3.1 (A:430-555) H 99.9 2.8E-26 2E-30 186.6 12.0 117 73-198 8-126 (126)
2 d1rila_ c.55.3.1 (A:) RNase H 99.9 4.3E-26 3.2E-30 189.9 6.5 125 73-201 4-144 (147)
3 d1jl1a_ c.55.3.1 (A:) RNase H 99.9 1.2E-25 8.7E-30 187.5 8.8 133 72-208 2-149 (152)
4 d1s1ta1 c.55.3.1 (A:430-539) H 99.8 4.6E-20 3.4E-24 146.1 10.0 98 74-181 10-110 (110)
5 d1zbfa1 c.55.3.1 (A:62-193) BH 99.7 1.9E-18 1.4E-22 139.9 4.6 113 74-191 6-131 (132)
6 d1g2913 b.40.6.3 (1:241-301) M 31.0 12 0.00088 23.8 2.1 25 23-47 1-25 (61)
7 d1o0wa2 d.50.1.1 (A:168-236) R 18.1 34 0.0025 21.7 2.4 18 107-124 51-68 (69)
8 d2bhua3 c.1.8.1 (A:111-530) Gl 17.8 56 0.0041 27.7 4.6 69 114-187 33-113 (420)
9 d1ud2a2 c.1.8.1 (A:1-390) Bact 17.1 50 0.0037 26.9 4.0 29 157-185 81-109 (390)
10 d1qu6a2 d.50.1.1 (A:91-179) ds 15.5 94 0.0069 20.7 4.4 21 106-126 62-82 (89)
No 1
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.93 E-value=2.8e-26 Score=186.60 Aligned_cols=117 Identities=22% Similarity=0.294 Sum_probs=88.8
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCCCCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCCCCC
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGPGPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFS 152 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~~~~ 152 (325)
..||||||+.++++.+|+|++...........+.+||++|||.||+.||+.. ..++.|+|||++|++.+++++..
T Consensus 8 ~t~YTDGS~~~n~~~~~~g~~~~~~~~~~~~~~~~tnn~AEl~Ai~~al~~~-----~~~i~I~tDS~~v~~~~~~~~~~ 82 (126)
T d1mu2a1 8 ETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMALTDS-----GPKVNIIVDSQYVMGIVASQPTE 82 (126)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTSCEEEEEESSCCHHHHHHHHHHHHHHTS-----CSEEEEEESCHHHHHHHHTCCSE
T ss_pred cEEEEcCCCCCCCCcEEEEEEecCCCEEEEecCCCcchHHHHHHHHHHhccC-----CcceEEEechHHHHHHHhcCCcc
Confidence 4799999999887777777655421111111235799999999999999853 57899999999999999998765
Q ss_pred --hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhccc
Q psy11794 153 --HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHT 198 (325)
Q Consensus 153 --~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa 198 (325)
.+....+ +..+. +...|.|.|||||+|++|||.||+||++|.
T Consensus 83 ~~~~~~~~~---~~~~~-~~~~v~~~wV~gH~g~~gNe~AD~LA~~ai 126 (126)
T d1mu2a1 83 SESKIVNQI---IEEMI-KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 126 (126)
T ss_dssp ESCHHHHHH---HHHHH-HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ccchHHHHH---HHHhh-hcceeEEEEEeCCCCCcchHHHHHHHHhhC
Confidence 3333322 22333 456899999999999999999999999984
No 2
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=99.92 E-value=4.3e-26 Score=189.94 Aligned_cols=125 Identities=21% Similarity=0.162 Sum_probs=93.7
Q ss_pred EEEEEcCCccCCCCceeEEEEEeecCCCCcc---CCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCC
Q psy11794 73 FHIDTDTAYRLQENRYSCCYLGTLVGPGPRY---FNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNI 149 (325)
Q Consensus 73 ~~IytDGS~~~~~~~~g~a~i~~~~g~~~~l---~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~ 149 (325)
+.||||||+.+|+|++|+|+++...+....+ ...+||++||+.|++.||+++.. ...+.|++||+++++.+..+
T Consensus 4 i~iytDGs~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~---~~~i~i~tds~~~~~~~~~~ 80 (147)
T d1rila_ 4 VALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE---PCEVDLYTDSHYLKKAFTEG 80 (147)
T ss_dssp CCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS---CCEEEEECCCHHHHHHHHSS
T ss_pred EEEEEccCCCCCCCccEEEEEEEECCcceEEecccccccHHHHHHHHHHHHhhhccC---CceEEEecchhhhhcccccc
Confidence 5899999999998888888877654432221 23579999999999999998743 67899999999999988764
Q ss_pred CCC------------hHHH-HHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCC
Q psy11794 150 CFS------------HPFI-SKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPR 201 (325)
Q Consensus 150 ~~~------------~~~~-~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~ 201 (325)
+.. .++. .++++.+..+. ....|.|+|||||+|++|||.||+|||+|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~v~n~dL~~~l~~~~-~~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~~ 144 (147)
T d1rila_ 81 WLEGWRKRGWRTAEGKPVKNRDLWEALLLAM-APHRVRFHFVKGHTGHPENERVDREARRQAQSQ 144 (147)
T ss_dssp HHHHHHHTTSBCTTSSBCTTHHHHHHHHHHH-TTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred chhhhhhccccccccccchhHHHHHHHHHHh-hhcccceEEccCCCCCcchHHHHHHHHHHHHHh
Confidence 210 1111 11222222233 467899999999999999999999999998764
No 3
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=1.2e-25 Score=187.54 Aligned_cols=133 Identities=16% Similarity=0.159 Sum_probs=97.8
Q ss_pred cEEEEEcCCccCCCCceeEEEEEeecCCCCcc---CCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcC
Q psy11794 72 IFHIDTDTAYRLQENRYSCCYLGTLVGPGPRY---FNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGN 148 (325)
Q Consensus 72 ~~~IytDGS~~~~~~~~g~a~i~~~~g~~~~l---~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~ 148 (325)
.+.||||||+.+|++++|+|+++...+....+ .+.+|+++||++|++.||+++. ....+.|++||++++..+..
T Consensus 2 ~I~IYtDGS~~~N~g~aG~G~vi~~~~~~~~~~~~~~~~tnn~aE~~Ai~~Al~~~~---~~~~i~i~tds~~~i~~~~~ 78 (152)
T d1jl1a_ 2 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK---EHAEVILSTDSQYVRQGITQ 78 (152)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCC---SCCEEEEEECCHHHHHHHHT
T ss_pred EEEEEEeCCCCCCCCcEEEEEEEEECCeEEEeccccCcccHHHHHHhhhhhhhhhhc---ccceEEEeecceeeEEcccc
Confidence 35899999999999999998776532211110 1357899999999999999874 47889999999999998876
Q ss_pred CCC--------C---hHHH-HHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHHHHHhcccCCCCCCCCCc
Q psy11794 149 ICF--------S---HPFI-SKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVDSAANHHTHPRHVNLCST 208 (325)
Q Consensus 149 ~~~--------~---~~~~-~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD~LAk~aa~~~~~~~~~~ 208 (325)
+.. . .++. ..+...+..+ .....|.|+|||||+|++|||.||+|||+|+..+.++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~-~~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~~~~~d~~~ 149 (152)
T d1jl1a_ 79 WIHNWKKRGWKTADKKPVKNVDLWQRLDAA-LGQHQIKWEWVKGHAGHPENERADELARAAAMNPTLEDTGY 149 (152)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHH-TTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCBCCTTC
T ss_pred hhhHhHhccchhcccCeeecHHHHHHHHHH-hhcceeEEEEecccCCCccHHHHHHHHHHHHhCCCCCccCC
Confidence 521 1 1110 1122222223 24568999999999999999999999999999887665544
No 4
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=99.81 E-value=4.6e-20 Score=146.15 Aligned_cols=98 Identities=21% Similarity=0.290 Sum_probs=74.9
Q ss_pred EEEEcCCccCCCCceeEEEEEeecCCCC-ccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCCCCC
Q psy11794 74 HIDTDTAYRLQENRYSCCYLGTLVGPGP-RYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNICFS 152 (325)
Q Consensus 74 ~IytDGS~~~~~~~~g~a~i~~~~g~~~-~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~~~~ 152 (325)
.+|||||+.++++.+|+|++... +... .....+||++|||.||+.||+.. ..+|.|+|||++|++++++++..
T Consensus 10 t~ytDGs~~~n~~~g~~g~~~~~-~~~~~~~~~~~TNn~aEl~Avi~aL~~~-----~~~v~I~TDS~yvi~~i~~~~~~ 83 (110)
T d1s1ta1 10 TFYVDGAANRETKLGKAGYVTNR-GRQKVVTLTDTTNQKTELQAIYLALQDS-----GLEVNIVTDSQYALGIIQAQPDQ 83 (110)
T ss_dssp EEEEEEEEETTTTEEEEEEEETT-SCEEEEEESSCCHHHHHHHHHHHHHHHS-----CSEEEEEECCHHHHHHHHHCCSE
T ss_pred EEEEeCCCCCCCCCcEEEEEEec-CCeEEEecccCcHHHHHHHHHHHHHHhC-----CCeEEEEEehHHHHHHHhcCccc
Confidence 68999999998877777665432 2111 11246799999999999999853 56899999999999999998776
Q ss_pred --hHHHHHHHHHHHHHHhcCCeEEEEEecCC
Q psy11794 153 --HPFISKIYQLWKLIVTRGTDVVFLWCPSH 181 (325)
Q Consensus 153 --~~~~~~i~~~~~~l~~~~~~i~~~WVpgH 181 (325)
+++..+|.+. + .....|.|.|||||
T Consensus 84 ~~~~l~~~il~~---l-~~~~~v~i~WVpgH 110 (110)
T d1s1ta1 84 SESELVNQIIEQ---L-IKKEKVYLAWVPAH 110 (110)
T ss_dssp ESCHHHHHHHHH---H-HHCSEEEEEECCSS
T ss_pred cchHHHHHHHHH---H-hcCCceEEEEeCCC
Confidence 6666665542 3 34678999999999
No 5
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=99.71 E-value=1.9e-18 Score=139.95 Aligned_cols=113 Identities=14% Similarity=0.036 Sum_probs=85.8
Q ss_pred EEEEcCCccCCCCceeEEEEEeecCC----CCccCCCCchHHHHHHHHHHHHHHhHhhcCCceEEEEeccHHHHHHhcCC
Q psy11794 74 HIDTDTAYRLQENRYSCCYLGTLVGP----GPRYFNLTTIYLAELLALYLCLKEISEFHSSSRIAIISDSLSVLSALGNI 149 (325)
Q Consensus 74 ~IytDGS~~~~~~~~g~a~i~~~~g~----~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~~i~I~tDS~~ai~~l~~~ 149 (325)
.||||||+.+|||++|+|++....+. +..+ +.+||++||++|++.||+.+.+ . ..++.|+|||++|++.+.++
T Consensus 6 sIy~DGa~~GNPGp~g~g~v~~~~~~~~~~sg~~-~~~TNN~aEl~A~i~aL~~~~~-~-~~~i~I~tDS~yvi~wv~~~ 82 (132)
T d1zbfa1 6 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKE-R-NSRKPIYSNSQTAIKWVKDK 82 (132)
T ss_dssp SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHHHHH-T-TCCCCEEESCHHHHHHHHHT
T ss_pred eEEEeecCCCCCchheEEEEEEcCCEEEEEEcCc-CccchHHHHHHHHHHHHHHhhc-C-CceEEEEeccHHHHHHHHhC
Confidence 48999999999999999877643221 1122 4689999999999999999987 3 36799999999999999876
Q ss_pred CCC---------hHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHH
Q psy11794 150 CFS---------HPFISKIYQLWKLIVTRGTDVVFLWCPSHCGIDGNEAVD 191 (325)
Q Consensus 150 ~~~---------~~~~~~i~~~~~~l~~~~~~i~~~WVpgH~gi~gNe~AD 191 (325)
.-+ .++.+.+.++...+. ...+.+.||+.|+..-||..||
T Consensus 83 ~~kt~~~~~vkN~~l~~~i~~a~~~lk--~h~~~~~~~KW~~~~wG~i~AD 131 (132)
T d1zbfa1 83 KAKSTLVRNEETALIWKLVDEAEEWLN--THTYETPILKWQTDKWGEIKAD 131 (132)
T ss_dssp CCCCCCCCSTTTHHHHHHHHHHHHHHH--HCCCCCCEEECCHHHHCSCTTC
T ss_pred ceecCcCCCcccHHHHHHHHHHHHHHH--hCCcCceeEEecCcccccCCCC
Confidence 411 445554544443343 3457788999999999999988
No 6
>d1g2913 b.40.6.3 (1:241-301) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=31.03 E-value=12 Score=23.75 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=18.0
Q ss_pred CCCcceeeeeecccccccCCCCchh
Q psy11794 23 GSNGMSYEYCWWSNKTYLHHENFSV 47 (325)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (325)
|+|+|++.-+......+....++.+
T Consensus 1 GSP~MNfi~~~v~~~~~~~~~~~~~ 25 (61)
T d1g2913 1 GSPPMNFLDAIVTEDGFVDFGEFRL 25 (61)
T ss_dssp SSSCCEEEEEEECTTSEEECSSCEE
T ss_pred CCCCceeEEEEEecCCeEEeCCEEE
Confidence 8999999999886655555454443
No 7
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.08 E-value=34 Score=21.68 Aligned_cols=18 Identities=22% Similarity=0.082 Sum_probs=15.7
Q ss_pred CchHHHHHHHHHHHHHHh
Q psy11794 107 TTIYLAELLALYLCLKEI 124 (325)
Q Consensus 107 ~s~~~AEl~Ai~~AL~~a 124 (325)
.|--.||..|+..||+.+
T Consensus 51 ~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 51 RTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 477889999999999876
No 8
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=17.79 E-value=56 Score=27.72 Aligned_cols=69 Identities=16% Similarity=0.020 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhHhhcCCceEEEE--eccHHHHHHhcCCC-CC------hH---HHHHHHHHHHHHHhcCCeEEEEEecCC
Q psy11794 114 LLALYLCLKEISEFHSSSRIAII--SDSLSVLSALGNIC-FS------HP---FISKIYQLWKLIVTRGTDVVFLWCPSH 181 (325)
Q Consensus 114 l~Ai~~AL~~a~~~~~~~~i~I~--tDS~~ai~~l~~~~-~~------~~---~~~~i~~~~~~l~~~~~~i~~~WVpgH 181 (325)
+.+|+.-|.++++ .+...|.|- ..+. .-..+. .. .+ -..++.++++++.++|.+|.+-.|+.|
T Consensus 33 ~~g~~~~ldyl~~-LGv~~i~L~Pv~~~~----~~~~~GY~~~d~~~vdp~~G~~~d~~~lv~~aH~~gi~VilD~V~NH 107 (420)
T d2bhua3 33 YRAAAEKLPYLKE-LGVTAIQVMPLAAFD----GQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNH 107 (420)
T ss_dssp HHHHHHTHHHHHH-HTCCEEEECCCEECS----SSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred HHHHHHhHHHHHH-cCCCEEEeCCCCcCC----CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHhccccccccccccc
Confidence 6777777888887 566666653 1100 000110 00 11 134567777788899999999999999
Q ss_pred CCCccc
Q psy11794 182 CGIDGN 187 (325)
Q Consensus 182 ~gi~gN 187 (325)
++...+
T Consensus 108 ~~~~~~ 113 (420)
T d2bhua3 108 FGPSGN 113 (420)
T ss_dssp CCSSSC
T ss_pred cCCCCc
Confidence 986544
No 9
>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}
Probab=17.14 E-value=50 Score=26.91 Aligned_cols=29 Identities=7% Similarity=-0.152 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCCCCc
Q psy11794 157 SKIYQLWKLIVTRGTDVVFLWCPSHCGID 185 (325)
Q Consensus 157 ~~i~~~~~~l~~~~~~i~~~WVpgH~gi~ 185 (325)
.++.++++.+.++|.+|.+-.|+.|++..
T Consensus 81 ~efk~lV~~~H~~GI~VilDvV~NHt~~~ 109 (390)
T d1ud2a2 81 AQLERAIGSLKSNDINVYGDVVMNHKMGA 109 (390)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred HHHHHHHHHHHhcCCceEEEEccccccCc
Confidence 45677777888999999999999999854
No 10
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.50 E-value=94 Score=20.66 Aligned_cols=21 Identities=29% Similarity=0.071 Sum_probs=18.1
Q ss_pred CCchHHHHHHHHHHHHHHhHh
Q psy11794 106 LTTIYLAELLALYLCLKEISE 126 (325)
Q Consensus 106 ~~s~~~AEl~Ai~~AL~~a~~ 126 (325)
..+--.||..|+..||+.+..
T Consensus 62 G~sKK~Akq~AA~~Al~~L~~ 82 (89)
T d1qu6a2 62 GSTKQEAKQLAAKLAYLQILS 82 (89)
T ss_dssp ESSHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHc
Confidence 346788999999999999876
Done!