BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11795
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 7 INGVMINFPPNVCRSRYRDYCCPGWTLKQATGLCIIHYRTGPCYTKVVNDMCQGQLEGVV 66
INGV N P + C TL +CI + G C+ V++ C+ + G
Sbjct: 13 INGVCKNSP-----GSFICECSSESTLDPTKTICIETIK-GTCWQTVIDGRCEININGAT 66
Query: 67 CTKQLCCATVGRAWGHPCEHCPAQLDCDEGHLKNIHSGQCVDIDECEAVPDIDECEAVPG 126
K CC+++G AWG PC C C +G+ + I QC DIDECE PG
Sbjct: 67 -LKSQCCSSLGAAWGSPCTLCQVDPICGKGYSR-IKGTQC---------EDIDECEVFPG 115
Query: 127 LCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+C+ G C+NT GSF C+C G + + C
Sbjct: 116 VCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 159 DRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLTSDNQCK 218
D +EC P C NG C N+ G F C C+ + CI+ +G+C+ ++ D +C+
Sbjct: 3 DIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVI-DGRCE 59
Query: 219 NKLPIRLSRKDCCCGKNMGKAWGDECLQCPM 249
+ + CC ++G AWG C C +
Sbjct: 60 ININGATLKSQCC--SSLGAAWGSPCTLCQV 88
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 144 CARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
C +G SR T CED +EC P +C NG CVNT G F C C G
Sbjct: 92 CGKGYSRIKGTQ-CEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGM 137
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 42 IHYRTGPCYTKVV------NDMCQGQLEGVVCTKQLCCATVGRAWGHPCEHCPAQLDCDE 95
+ R+G CY + + C ++ GV +K CC ++G+AWG PCE CPA +
Sbjct: 42 VDTRSGNCYLDIRPRGDNGDTACSNEI-GVGVSKASCCCSLGKAWGTPCEMCPAVNTSEY 100
Query: 96 GHL----KNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRN 151
L + I E DIDEC+ +PGLC+GG+CINT GSF C C G N
Sbjct: 101 KILCPGGEGFRPNPITVILE-----DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLN 155
Query: 152 PDTNACE 158
DT C+
Sbjct: 156 EDTRVCD 162
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 159 DRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSL-----TS 213
D NEC + P C +G CVNT G + C C P F R+ C+D R G+CY +
Sbjct: 2 DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 214 DNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMI 250
D C N++ + +S+ CCC ++GKAWG C CP +
Sbjct: 61 DTACSNEIGVGVSKASCCC--SLGKAWGTPCEMCPAV 95
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 262 DARQGSCYTSL-----TSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMI 311
D R G+CY + D C N++ + +S+ CCC ++GKAWG C CP +
Sbjct: 43 DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC--SLGKAWGTPCEMCPAV 95
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 42 IHYRTGPCYTKVV------NDMCQGQLEGVVCTKQLCCATVGRAWGHPCEHCPAQLDCDE 95
+ R+G CY + + C ++ GV +K CC ++G+AWG PCE CPA +
Sbjct: 42 VDTRSGNCYLDIRPRGDNGDTACSNEI-GVGVSKASCCCSLGKAWGTPCEXCPAVNTSEY 100
Query: 96 GHL----KNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRN 151
L + I E DIDEC+ +PGLC+GG+CINT GSF C C G N
Sbjct: 101 KILCPGGEGFRPNPITVILE-----DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLN 155
Query: 152 PDTNACE 158
DT C+
Sbjct: 156 EDTRVCD 162
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 159 DRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSL-----TS 213
D NEC + P C +G CVNT G + C C P F R+ C+D R G+CY +
Sbjct: 2 DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 214 DNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMI 250
D C N++ + +S+ CCC ++GKAWG C CP +
Sbjct: 61 DTACSNEIGVGVSKASCCC--SLGKAWGTPCEXCPAV 95
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 262 DARQGSCYTSL-----TSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMI 311
D R G+CY + D C N++ + +S+ CCC ++GKAWG C CP +
Sbjct: 43 DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC--SLGKAWGTPCEXCPAV 95
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
D+DEC P +C C N PG F CEC G N + +CED +EC E N+CA CV
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE--NMCAQ-LCV 58
Query: 177 NTDGGFYCICN--PGFIPTQDRMSC 199
N GG+ C C+ GF QD+ SC
Sbjct: 59 NYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 84 CEHCPAQLDCD--EGHLKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFT 141
C++ P +C+ EG+ N+ S C DIDEC +C C+N PG +T
Sbjct: 18 CKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-----------NMC-AQLCVNYPGGYT 65
Query: 142 CEC--ARGKSRNPDTNACE 158
C C +G D +CE
Sbjct: 66 CYCDGKKGFKLAQDQKSCE 84
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 158 EDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQ 204
+D +EC +P+IC C N G F C C G+ SC D +
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDE 47
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARG-KSRNPDTNACEDRNECREEPNICANGKC 175
DIDEC P LC G+C+NTPG F C+C G +S C D +EC+ +P +C G C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 176 VNTDGGFYCICNPGFIPTQDRMSCI 200
NT+G + C C PG + + +CI
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISACI 86
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
D+DEC+ P +C+ G+CINT GS+ CEC G N C D +EC N C NG C
Sbjct: 4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECS-VGNPCGNGTCK 59
Query: 177 NTDGGFYCICNPGFIP 192
N GGF C C GF P
Sbjct: 60 NVIGGFECTCEEGFEP 75
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 159 DRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQ 204
D +EC+E P++C +G+C+NTDG + C C G+I + C+D +
Sbjct: 4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAGNE--CVDTDE 46
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 114 AVPDIDECEAVPGLC-RGGRCINTPGSFTCECARGKSRNPDTNACE-DRNECREEPNICA 171
+ D+DEC C G+CINT GSF C+C +G + CE D NEC P C
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNP--CQ 54
Query: 172 N-GKCVNTDGGFYCICNPGF 190
N C++ G F CIC PG+
Sbjct: 55 NDATCLDQIGEFQCICMPGY 74
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 117 DIDECEAVPGLC-RGGRCINTPGSFTCECARGKSRNPDTNACE-DRNECREEPNICAN-G 173
D+DEC C G+CINT GSF C+C +G + CE D NEC P C N
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNP--CQNDA 55
Query: 174 KCVNTDGGFYCICNPGF 190
C++ G F CIC PG+
Sbjct: 56 TCLDQIGEFQCICMPGY 72
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 132 RCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICNPGFI 191
+C G+ C C G D C+D NEC EE C+ G C N++G F C C G+
Sbjct: 16 KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEE-GYCSQG-CTNSEGAFQCWCEAGYE 73
Query: 192 PTQDRMSC 199
DR SC
Sbjct: 74 LRPDRRSC 81
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACE 158
D++EC A G C G C N+ G+F C C G PD +C+
Sbjct: 43 DVNEC-AEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCK 82
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 113 EAVPDIDECEAVPGLCRG--GRCINTPGSFTCECARGKS--------RNPDTNACEDRNE 162
E DI+EC + + G C NT GS+ C C+ G +N N C+D +E
Sbjct: 39 ETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDE 98
Query: 163 CREEPNIC-ANGKCVNTDGGFYCICNPGFIP 192
C + C ++ C NT G + C C PG+ P
Sbjct: 99 CSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP 129
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 156 ACEDRNECREEPNICAN--GKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C+D NEC + C NT+G + C+C+PG+ P + + + +C
Sbjct: 40 TCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC 93
>pdb|1APJ|A Chain A, Nmr Study Of The Transforming Growth Factor Beta Binding
Protein-Like Domain (Tb Module8-Cys Domain), Nmr, 21
Structures
Length = 74
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 45 RTGPCYTKVVNDMCQGQLEGVVCTKQLCCATVGRAWGHPCEHCPAQLD 92
R CY K C ++ CCA G WG PCE CP + D
Sbjct: 6 RMSYCYAKFEGGKCSSPKSRNHSKQECCCALKGEGWGDPCELCPTEPD 53
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 198 SCIDARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCP 248
S D R CY +C + S+++CCC G+ WGD C CP
Sbjct: 1 SAQDLRMSYCYAKFEG-GKCSSPKSRNHSKQECCCALK-GEGWGDPCELCP 49
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 262 DARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCP 309
D R CY +C + S+++CCC G+ WGD C CP
Sbjct: 4 DLRMSYCYAKFEG-GKCSSPKSRNHSKQECCCALK-GEGWGDPCELCP 49
>pdb|1KSQ|A Chain A, Nmr Study Of The Third Tb Domain From Latent Transforming
Growth Factor-Beta Binding Protein-1
Length = 75
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 203 RQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDEC--LQCPMIG 251
+ CY +L + C N L +++++CCC G WGD C CP++G
Sbjct: 8 EKKECYYNLNDASLCDNVLAPNVTKQECCC--TSGAGWGDNCEIFPCPVLG 56
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 264 RQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDEC--LQCPMIG 312
+ CY +L + C N L +++++CCC G WGD C CP++G
Sbjct: 8 EKKECYYNLNDASLCDNVLAPNVTKQECCC--TSGAGWGDNCEIFPCPVLG 56
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 153 DTNACEDRNECREE-PNICANGKCVNTDGGFYCICNPGFIPTQDRMSC 199
D + C R++ EE P C N GG++C C PG+ +DR SC
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 130 GGRCINTPGSFTCECARGKSRNPD-------TNACEDRNEC--REEPNICANGKCVNTDG 180
G + +PGSF R N + D +EC RE+ + + C N G
Sbjct: 84 GQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIG 143
Query: 181 GFYCICNPGFIPTQDRMSC 199
G+YC C G+I D +C
Sbjct: 144 GYYCSCRFGYILHTDNRTC 162
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 130 GGRCINTPGSFTCECARGKSRNPD-------TNACEDRNEC--REEPNICANGKCVNTDG 180
G + +PGSF R N + D +EC RE+ + + C N G
Sbjct: 84 GQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIG 143
Query: 181 GFYCICNPGFIPTQDRMSC 199
G+YC C G+I D +C
Sbjct: 144 GYYCSCRFGYILHTDNRTC 162
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 105 QCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACE 158
+C DIDEC+ D D C + C+N G + C+C G +P T AC+
Sbjct: 36 RCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKACK 78
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC ++P+ C+ CVN +GG+ C C GF
Sbjct: 37 CEDIDEC-QDPDTCSQ-LCVNLEGGYKCQCEEGF 68
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 105 QCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACE 158
+C DIDEC+ D D C + C+N G + C+C G +P T AC+
Sbjct: 76 RCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKACK 118
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC ++P+ C+ CVN +GG+ C C GF
Sbjct: 77 CEDIDEC-QDPDTCSQ-LCVNLEGGYKCQCEEGF 108
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 98 LKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+ + +C DIDEC+ D D C + C+N G + C+C G +P T AC
Sbjct: 58 FQLVAQRRCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKAC 106
Query: 158 E 158
+
Sbjct: 107 K 107
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC++ P+ C+ CVN +GG+ C C GF
Sbjct: 66 CEDIDECQD-PDTCSQ-LCVNLEGGYKCQCEEGF 97
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 98 LKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+ + +C DIDEC+ D D C + C+N G + C+C G +P T AC
Sbjct: 58 FQLVAQRRCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKAC 106
Query: 158 E 158
+
Sbjct: 107 K 107
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC++ P+ C+ CVN +GG+ C C GF
Sbjct: 66 CEDIDECQD-PDTCSQ-LCVNLEGGYKCQCEEGF 97
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 98 LKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+ + +C DIDEC+ D D C + C+N G + C+C G +P T AC
Sbjct: 341 FQLVAQRRCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKAC 389
Query: 158 E 158
+
Sbjct: 390 K 390
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC ++P+ C+ CVN +GG+ C C GF
Sbjct: 349 CEDIDEC-QDPDTCSQ-LCVNLEGGYKCQCEEGF 380
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 98 LKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+ + +C DIDEC+ D D C + C+N G + C+C G +P T AC
Sbjct: 34 FQLVAQRRCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKAC 82
Query: 158 E 158
+
Sbjct: 83 K 83
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC ++P+ C+ CVN +GG+ C C GF
Sbjct: 42 CEDIDEC-QDPDTCSQ-LCVNLEGGYKCQCEEGF 73
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 98 LKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+ + +C DIDEC+ D D C + C+N G + C+C G +P T AC
Sbjct: 323 FQLVAQRRCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKAC 371
Query: 158 E 158
+
Sbjct: 372 K 372
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 102 HSGQCVDIDE-CEAVPDIDECEAVP-GLCRGGRCINTPGS-----------FTCECARGK 148
HSG+C+ +D+ C D + P C C++ G + C C G
Sbjct: 264 HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGF 323
Query: 149 SRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC ++P+ C+ CVN +GG+ C C GF
Sbjct: 324 QLVA-QRRCEDIDEC-QDPDTCSQ-LCVNLEGGYKCQCEEGF 362
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 98 LKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+ + +C DIDEC+ D D C + C+N G + C+C G +P T AC
Sbjct: 34 FQLVAQRRCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKAC 82
Query: 158 E 158
+
Sbjct: 83 K 83
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC ++P+ C+ CVN +GG+ C C GF
Sbjct: 42 CEDIDEC-QDPDTCSQ-LCVNLEGGYKCQCEEGF 73
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 156 ACEDRNECREEPNICA--NGKCVNTDGGFYCICNPGFIPTQDRMSC 199
A ED +EC+ P + C N GGFYC C G++ +++ +C
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 98 LKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+ + +C DIDEC+ D D C + C+N G + C+C G +P T AC
Sbjct: 31 FQLVAQRRCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKAC 79
Query: 158 E 158
+
Sbjct: 80 K 80
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC ++P+ C+ CVN +GG+ C C GF
Sbjct: 39 CEDIDEC-QDPDTCSQ-LCVNLEGGYKCQCEEGF 70
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 98 LKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+ + +C DIDEC+ D D C + C+N G + C+C G +P T AC
Sbjct: 31 FQLVAQRRCEDIDECQ---DPDTCSQL--------CVNLEGGYKCQCEEGFQLDPHTKAC 79
Query: 158 E 158
+
Sbjct: 80 K 80
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGF 190
CED +EC++ P+ C+ CVN +GG+ C C GF
Sbjct: 39 CEDIDECQD-PDTCSQ-LCVNLEGGYKCQCEEGF 70
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 161 NECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSC 199
NEC EE C+ G C N++G F C C G+ DR SC
Sbjct: 2 NECAEE-GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSC 38
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 118 IDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACE 158
++EC A G C G C N+ G+F C C G PD +C+
Sbjct: 1 VNEC-AEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCK 39
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 107 VDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREE 166
VD D+C +P C ++ C G CI GSF+C+C G N C +
Sbjct: 4 VDGDQCLVLPLEHPCASL--CCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLN-CSLD 60
Query: 167 PNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C + C+ G C C PG+ D + C A + C
Sbjct: 61 NGGCTH-YCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPC 100
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 123 AVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREE 166
V +C+ G+ + F C C G + N CE++NEC++E
Sbjct: 8 TVDTICKNGQLVQMSNHFKCMCNEGLVHLSE-NTCEEKNECKKE 50
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 156 ACEDRNECREE--PNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYT 209
A ED +ECR ++ + C GG+YC C G+I Q++ +C G +T
Sbjct: 116 AAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCSGQVFT 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.498
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,307,088
Number of Sequences: 62578
Number of extensions: 448918
Number of successful extensions: 1030
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 164
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)