RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11795
(313 letters)
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 90.8 bits (226), Expect = 2e-23
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARG-KSRNPDTNACEDRNECREEPNICANGKC 175
DIDEC P LC G+C+NTPG F C+C G +S C D +EC+ +P +C G C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 176 VNTDGGFYCICNPGFIPTQDRMSCI 200
NT+G + C C PG + + +CI
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISACI 86
Score = 48.4 bits (116), Expect = 7e-08
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 92 DCDEGHLKNIHSG-QCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSR 150
CDEG+ C+DIDE C+ P LCRGG C NT GS+ CEC G
Sbjct: 28 KCDEGYESGFMMMKNCMDIDE---------CQRDPLLCRGGVCHNTEGSYRCECPPGHQL 78
Query: 151 NPDTNAC 157
+P+ +AC
Sbjct: 79 SPNISAC 85
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 79.2 bits (196), Expect = 4e-19
Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
D+DEC P +C C N PG F CEC G N + +CED +EC E N+CA CV
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE--NMCA-QLCV 58
Query: 177 NTDGGFYCICN--PGFIPTQDRMSCID 201
N GG+ C C+ GF QD+ SC
Sbjct: 59 NYPGGYTCYCDGKKGFKLAQDQKSCEV 85
Score = 53.8 bits (130), Expect = 8e-10
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 158 EDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
+D +EC +P+IC C N G F C C G+ SC D
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCED 44
Score = 42.6 bits (101), Expect = 8e-06
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 92 DCDEGHLKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCEC--ARGKS 149
+C EG+ N+ S C DIDEC C C+N PG +TC C +G
Sbjct: 28 ECPEGYRYNLKSKSCEDIDECSENM----CA--------QLCVNYPGGYTCYCDGKKGFK 75
Query: 150 RNPDTNACEDRN 161
D +CE +
Sbjct: 76 LAQDQKSCEVVS 87
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 76.2 bits (188), Expect = 4e-17
Identities = 31/136 (22%), Positives = 40/136 (29%), Gaps = 29/136 (21%)
Query: 92 DCDEGHLKNIHSGQCVDIDECEAVP----------------------------DIDECEA 123
DC N CVD + +
Sbjct: 27 DCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWG 86
Query: 124 VPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFY 183
P + C G NP T ED +EC+E P +C GKC+NT G F
Sbjct: 87 TPCEM-CPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQ 145
Query: 184 CICNPGFIPTQDRMSC 199
C C G+ +D C
Sbjct: 146 CRCPTGYYLNEDTRVC 161
Score = 67.4 bits (165), Expect = 6e-14
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
D++EC P C G C+NTPGS+ C+C NP C D N + +
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG----NCYLDIRPR 56
Query: 177 NTDGGFYCICNPGFIPTQDRMSCID 201
+G C G ++ C
Sbjct: 57 GDNGDTACSNEIGVGVSKASCCCSL 81
Score = 49.3 bits (118), Expect = 1e-07
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 159 DRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLTSDN--- 215
D NEC +P C +G CVNT G + C C P F R+ C+D R G+CY +
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 216 --QCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCP 248
C N++ + +S+ CCC ++GKAWG C CP
Sbjct: 61 DTACSNEIGVGVSKASCCC--SLGKAWGTPCEMCP 93
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 71.8 bits (177), Expect = 2e-16
Identities = 38/94 (40%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 106 CVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECRE 165
VD+DEC P +C+ G+CINT GS+ CEC G + C D +EC
Sbjct: 2 AVDMDEC----------KEPDVCKHGQCINTDGSYRCECPFGYILAGNE--CVDTDEC-S 48
Query: 166 EPNICANGKCVNTDGGFYCICNPGFIPTQDRMSC 199
N C NG C N GGF C C GF P M+C
Sbjct: 49 VGNPCGNGTCKNVIGGFECTCEEGFEP-GPMMTC 81
Score = 45.7 bits (109), Expect = 6e-07
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 156 ACEDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
+ D +EC +EP++C +G+C+NTDG + C C G+ C+D
Sbjct: 1 SAVDMDEC-KEPDVCKHGQCINTDGSYRCECPFGY--ILAGNECVD 43
Score = 37.2 bits (87), Expect = 7e-04
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 92 DCDEGHLKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRN 151
+C G++ +CVD DEC +V C G C N G F C C G
Sbjct: 29 ECPFGYILA--GNECVDTDEC----------SVGNPCGNGTCKNVIGGFECTCEEGFEPG 76
Query: 152 PDTNACE 158
P CE
Sbjct: 77 PMMT-CE 82
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 72.2 bits (177), Expect = 8e-16
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 117 DIDECEAVPGLC--RGGRCINTPGSFTCECARG--------KSRNPDTNACEDRNECREE 166
DI+EC + + + C NT GS+ C C+ G +N N C+D +EC
Sbjct: 43 DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 167 PNIC-ANGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
+ C ++ C NT G + C C PG+ P +
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQK 138
Score = 53.7 bits (129), Expect = 4e-09
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARG-----KSRNPDTNACEDRNECREEPNIC- 170
D C C+N + C C G + C+D NEC +
Sbjct: 1 DSRGCARWCPQD--SSCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSC 55
Query: 171 -ANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C NT+G + C+C+PG+ P + + + +C
Sbjct: 56 GKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC 93
Score = 46.7 bits (111), Expect = 9e-07
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 93 CDEGHLKNIHSGQCVDIDECEAVPDIDECEAVPGLCR-GGRCINTPGSFTCECARGKSRN 151
C G+ + + E D+DEC + C C NT GS++C C G
Sbjct: 72 CSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPR 130
Query: 152 PDTNACEDRNEC 163
+ C
Sbjct: 131 HGIPNNQKDTVC 142
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 66.6 bits (163), Expect = 1e-13
Identities = 30/124 (24%), Positives = 41/124 (33%), Gaps = 18/124 (14%)
Query: 92 DCDEGHLKNIHSGQCVDIDECEAV---------------PDIDECEAVPGLCRGGRCINT 136
+C + C++ + +C + G G T
Sbjct: 27 ECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWG--SPCT 84
Query: 137 PGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDR 196
C +G SR T CED +EC P +C NG CVNT G F C C G
Sbjct: 85 LCQVDPICGKGYSRIKGTQ-CEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATG 143
Query: 197 MSCI 200
C+
Sbjct: 144 RICL 147
Score = 53.5 bits (129), Expect = 4e-09
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
DIDECE+ P C G C N+PGSF CEC+ + +P C + + C
Sbjct: 3 DIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGT----------CW 50
Query: 177 NTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
T C N + +
Sbjct: 51 QTVIDGRCEININGATLKSQCCSSLGAAWGS 81
Score = 50.0 bits (120), Expect = 7e-08
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 158 EDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLTSDNQC 217
D +EC P C NG C N+ G F C C+ + CI+ +G+C+ ++ +C
Sbjct: 2 ADIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID-GRC 58
Query: 218 KNKLPIRLSRKDCCCGKNMGKAWGDECLQCP 248
+ + + CC ++G AWG C C
Sbjct: 59 EININGATLKSQCCS--SLGAAWGSPCTLCQ 87
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 62.3 bits (152), Expect = 1e-12
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
+EC G C C + + C C G CED +EC ++P+ C+ CV
Sbjct: 28 GTNECLDNNGGC-SYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDEC-QDPDTCS-QLCV 83
Query: 177 NTDGGFYCICNPGFIPTQDRMSC 199
N +GG+ C C GF +C
Sbjct: 84 NLEGGYKCQCEEGFQLDPHTKAC 106
Score = 56.2 bits (136), Expect = 2e-10
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 129 RGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICNP 188
+ + + NEC + C + C + G+ C+C
Sbjct: 2 KHHHHHHPMSDYDIPTTEN----LYFQGAMGTNECLDNNGGC-SYVCNDLKIGYECLCPD 56
Query: 189 GFIPTQDRMSCID 201
GF R C D
Sbjct: 57 GFQLVAQR-RCED 68
Score = 39.2 bits (92), Expect = 2e-04
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Query: 104 GQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACE 158
+C DIDEC+ P C C+N G + C+C G +P T AC+
Sbjct: 64 RRCEDIDECQ----------DPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 59.0 bits (143), Expect = 2e-11
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 105 QCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECR 164
+ VD D+C +P C ++ C G CI+ GSF+C+C G C
Sbjct: 2 KHVDGDQCLVLPLEHPCASLC--CGHGTCIDGIGSFSCDCRSGWEGRFCQR-EVSFLNCS 58
Query: 165 EEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
+ C C+ G C C PG+ D + C A + C
Sbjct: 59 LDNGGC-THYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPC 100
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 61.3 bits (148), Expect = 8e-11
Identities = 29/137 (21%), Positives = 42/137 (30%), Gaps = 3/137 (2%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
+ C G C +C G+ C C G D C+D NEC E C+ G C
Sbjct: 2 GEENCNVNNGGC-AQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC-AEEGYCSQG-CT 58
Query: 177 NTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNM 236
N++G F C C G+ DR SC + + +N
Sbjct: 59 NSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 118
Query: 237 GKAWGDECLQCPMIGED 253
+ +
Sbjct: 119 IALDFHHRRELVFWSDV 135
Score = 38.2 bits (88), Expect = 0.003
Identities = 23/136 (16%), Positives = 35/136 (25%), Gaps = 14/136 (10%)
Query: 82 HPCEHCP--AQLDCDEGHLKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGS 139
C+ Q C G+ C D++EC A G C C N+ G+
Sbjct: 15 QKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC----------AEEGYC-SQGCTNSEGA 63
Query: 140 FTCECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSC 199
F C C G PD +C+
Sbjct: 64 FQCWCEAGYELRPDRRSCKALGPEP-VLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD 122
Query: 200 IDARQGSCYTSLTSDN 215
R+ + S + +
Sbjct: 123 FHHRRELVFWSDVTLD 138
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 55.2 bits (132), Expect = 8e-09
Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 4/131 (3%)
Query: 119 DECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCVNT 178
+EC G C C + + C C G CED +EC ++P+ C+ CVN
Sbjct: 1 NECLDNNGGC-SHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDEC-QDPDTCS-QLCVNL 56
Query: 179 DGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGK 238
+GG+ C C GF +C + K L +N+
Sbjct: 57 EGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Query: 239 AWGDECLQCPM 249
+
Sbjct: 117 LDTEVASNRIY 127
Score = 46.4 bits (109), Expect = 7e-06
Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 13/130 (10%)
Query: 82 HPCEHCPAQLDC-DEGHLKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSF 140
H C +C + + +C DIDEC+ P C C+N G +
Sbjct: 12 HVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ----------DPDTC-SQLCVNLEGGY 60
Query: 141 TCECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCI 200
C+C G +P T AC+ + +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR-KMTLDRSEYTSLIPNLRNVVALDT 119
Query: 201 DARQGSCYTS 210
+ Y S
Sbjct: 120 EVASNRIYWS 129
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 49.9 bits (120), Expect = 5e-08
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 117 DIDECEAVPGLCR-GGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANG-K 174
D+DEC C G+CINT GSF C+C +G + D NEC N C N
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT---GPRCEIDVNEC--VSNPCQNDAT 58
Query: 175 CVNTDGGFYCICNPGF 190
C++ G F CIC PG+
Sbjct: 59 CLDQIGEFQCICMPGY 74
Score = 44.5 bits (106), Expect = 4e-06
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 117 DIDECEAVPGLCR-GGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICAN-GK 174
D++EC + P C+ C++ G F C C G + + +EC P C + G+
Sbjct: 44 DVNECVSNP--CQNDATCLDQIGEFQCICMPGYE---GVHCEVNTDECASSP--CLHNGR 96
Query: 175 CVNTDGGFYCICNPGF 190
C++ F C C GF
Sbjct: 97 CLDKINEFQCECPTGF 112
Score = 37.2 bits (87), Expect = 0.001
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 156 ACEDRNECREEPNICAN-GKCVNTDGGFYCICNPGF 190
+ +D +EC N C + GKC+NT G F C C G+
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGY 36
Score = 34.5 bits (80), Expect = 0.014
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 117 DIDECEAVPGLCR-GGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGK 174
+ DEC + P C GRC++ F CEC G + D + + + N +
Sbjct: 82 NTDECASSP--CLHNGRCLDKINEFQCECPTGFT---GHLCQVDLHHILDAQKMVWNHR 135
>1apj_A Fibrillin; microfibril, TB module, marfan syndrome, connective
tissue, novel fold, extracellular matrix; NMR {Homo
sapiens} SCOP: g.23.1.1
Length = 74
Score = 47.6 bits (113), Expect = 1e-07
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 198 SCIDARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMIGED 253
S D R CY +C + S+++CCC G+ WGD C CP ++
Sbjct: 1 SAQDLRMSYCYAKF-EGGKCSSPKSRNHSKQECCCAL-KGEGWGDPCELCPTEPDE 54
Score = 44.1 bits (104), Expect = 2e-06
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 45 RTGPCYTKVVNDMCQGQLEGVVCTKQLCCATVGRAWGHPCEHCPAQ 90
R CY K C ++ CCA G WG PCE CP +
Sbjct: 6 RMSYCYAKFEGGKCSSPKSRNHSKQECCCALKGEGWGDPCELCPTE 51
Score = 42.2 bits (99), Expect = 9e-06
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 262 DARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMIGE 313
D R CY +C + S+++CCC G+ WGD C CP +
Sbjct: 4 DLRMSYCYAKF-EGGKCSSPKSRNHSKQECCCAL-KGEGWGDPCELCPTEPD 53
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 48.5 bits (116), Expect = 1e-07
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
+ C+ + +CEC G D C D +EC E C +G C
Sbjct: 38 EPHRCQMFCNQTACPADCDPNTQASCECPEG-YILDDGFICTDIDEC-ENGGFC-SGVCH 94
Query: 177 NTDGGFYCICNPGFIPT-QDRMSC 199
N G F CIC P Q C
Sbjct: 95 NLPGTFECICGPDSALAGQIGTDC 118
Score = 48.5 bits (116), Expect = 1e-07
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 115 VPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGK 174
V +D C C S+ C CA G + P + + C+ N A
Sbjct: 1 VEPVDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIPH-----EPHRCQMFCNQTACPA 53
Query: 175 CVNTDGGFYCICNPGFIPTQDRMSCID 201
+ + C C G+I D C D
Sbjct: 54 DCDPNTQASCECPEGYIL-DDGFICTD 79
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 48.9 bits (117), Expect = 7e-07
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 117 DIDECEAVPGLCR-GGRCINTPGSFTCECARGKSRNPDTNACE-DRNECREEPNICANGK 174
C C G C ++ +TC C+ G + + CE +NEC E
Sbjct: 4 GGSPCI--SQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHF 57
Query: 175 CVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C+ + C C G+ +D C+ Q +C
Sbjct: 58 CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 46.6 bits (111), Expect = 1e-06
Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
D D+CE P L GG C + S+ C C G CE C + C
Sbjct: 47 DGDQCEPNPCLN-GGLCKDDINSYECWCQVGFE----GKNCELDATCNIKNGRCKQFCKT 101
Query: 177 NTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
D C C G+ D+ SC A C
Sbjct: 102 GADSKVLCSCTTGYRLAPDQKSCKPAVPFPC 132
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 47.3 bits (112), Expect = 4e-06
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 22/103 (21%)
Query: 105 QCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCE------------CARGKSRNP 152
C D+DEC VPDI + RC+NT F C ++
Sbjct: 40 HCEDLDECALVPDICFSTSK-----VPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKT 94
Query: 153 DTNACEDRNECREEPNIC-ANGKCVN----TDGGFYCICNPGF 190
+ CE N C+++ + C + +C+ +D + C C G+
Sbjct: 95 EKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGY 137
Score = 43.9 bits (103), Expect = 4e-05
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 108 DIDECEAVPDIDECEAVPGLCRGGRCINTP-GSFTC-ECARGKSRNPDTNACEDRNECRE 165
D D C + P C G +C + P GS++C C G N CED +EC
Sbjct: 2 DPDGCLSNP----C------FPGAQCSSFPDGSWSCGFCPVGFLGNGTH--CEDLDECAL 49
Query: 166 EPNIC----ANGKCVNTDGGFYCI-CNPGFIPTQDRMSCIDARQGSCYT 209
P+IC +CVNT GF+C+ C P + Q ++A +
Sbjct: 50 VPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQV 98
Score = 27.7 bits (61), Expect = 6.8
Identities = 25/174 (14%), Positives = 43/174 (24%), Gaps = 7/174 (4%)
Query: 13 NFPPNVCRSRYRDYCCPGWTLKQATGLCIIHYRTGPCYTKVVNDMCQGQLEGVVCTKQLC 72
C + V ++ QL
Sbjct: 162 TNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQ---- 217
Query: 73 CATVGRAWGHPCEHCPAQLDCDEGHLKN--IHSGQCVDIDECEAVPDIDECEAVPGLCRG 130
G C++CP + + N VDID + + D C V +
Sbjct: 218 ADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQR 277
Query: 131 GRCINTPGSFTCECARGKSRNP-DTNACEDRNECREEPNICANGKCVNTDGGFY 183
+ G C + + D + ++C +I +G N D Y
Sbjct: 278 DTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPY 331
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 44.2 bits (105), Expect = 6e-06
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
D D+CE P G+C + G +TC C G N + N + C
Sbjct: 41 DGDQCETSPCQN-QGKCKDGLGEYTCTCLEGFE---GKNCELFTRKLCSLDNGDCDQFCH 96
Query: 177 NTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C C G+ + +CI C
Sbjct: 97 EEQNSVVCSCARGYTLADNGKACIPTGPYPC 127
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 43.6 bits (103), Expect = 2e-05
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
D D+CE P G+C + G +TC C G R C + C + C
Sbjct: 41 DGDQCETSPCQN-QGKCKDGLGEYTCTCLEGFE--GKNCELFTRKLCSLDNGDC-DQFCH 96
Query: 177 NTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C C G+ + +CI C
Sbjct: 97 EEQNSVVCSCARGYTLADNGKACIPTGPYPC 127
Score = 26.6 bits (59), Expect = 8.7
Identities = 6/76 (7%), Positives = 18/76 (23%), Gaps = 6/76 (7%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANG-KC 175
P + + G++ PD+ + + +P N
Sbjct: 118 ACIPTGPYPCG-KQTLERRKRSVAQATSSSGEA--PDSITWKPYDAADLDP--TENPFDL 172
Query: 176 VNTDGGFYCICNPGFI 191
++ + +
Sbjct: 173 LDFNQTQPERGDNNLT 188
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 40.8 bits (96), Expect = 9e-05
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 13/97 (13%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACE-DRNECREEPNICANGKC 175
D D+C + P GG C + S+ C C CE +++ NG C
Sbjct: 46 DGDQCASSPCQN-GGSCKDQLQSYICFCLPAFE----GRNCETHKDDQLICV--NENGGC 98
Query: 176 VNT-----DGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C C+ G+ D +SC + C
Sbjct: 99 EQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 135
Score = 33.5 bits (77), Expect = 0.030
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 128 CRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICAN-GKCVNTDGGFYCIC 186
C+ +C + A + D ++C + C N G C + + C C
Sbjct: 17 CKEEQCSFEEAREIFKDAERT--KLFWISYSDGDQC--ASSPCQNGGSCKDQLQSYICFC 72
Query: 187 NPGF 190
P F
Sbjct: 73 LPAF 76
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 38.2 bits (89), Expect = 1e-04
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 107 VDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACE 158
VD+DEC A E C C N G + C C G D ++C+
Sbjct: 2 VDLDEC-ASRSKSGEEDPQPQC-QHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
Score = 36.7 bits (85), Expect = 4e-04
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 158 EDRNECREEPNICANGK-------CVNTDGGFYCICNPGFIPTQDRMSC 199
D +EC C N GG++C C PG+ +DR SC
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 37.9 bits (88), Expect = 0.001
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 157 CEDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
D NEC + ++ + C N GG++C C P + D +C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 35.6 bits (82), Expect = 0.007
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACED 159
DI+EC + C N G + C C + D C
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 38.6 bits (89), Expect = 0.002
Identities = 13/106 (12%), Positives = 19/106 (17%), Gaps = 11/106 (10%)
Query: 117 DIDECEAVPGLCRG-GRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNIC---AN 172
C C C + F C C + N C +
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGN--GRQCVAEGSPQRVNGKVKGRIF 61
Query: 173 GKCVNTDGGFYCICNPGFIPTQDR-----MSCIDARQGSCYTSLTS 213
F ++ +S I G L
Sbjct: 62 VGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAP 107
Score = 35.5 bits (81), Expect = 0.017
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 158 EDRNECREEPNIC-ANGKCVNTDGGFYCICNPGFI 191
+ C + C + +C + GF C C +
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYT 37
>1ksq_A Latent transforming growth factor beta binding protein 1;
structure, LTBP-1, TGF-beta, TB domain, latency
associated propeptide, LAP; NMR {Homo sapiens} SCOP:
g.23.1.1
Length = 75
Score = 35.7 bits (82), Expect = 0.002
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 204 QGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDEC--LQCPMIG 251
+ CY +L + C N L +++++CCC G WGD C CP++G
Sbjct: 9 KKECYYNLNDASLCDNVLAPNVTKQECCC--TSGAGWGDNCEIFPCPVLG 56
Score = 35.7 bits (82), Expect = 0.002
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 265 QGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDEC--LQCPMIG 312
+ CY +L + C N L +++++CCC G WGD C CP++G
Sbjct: 9 KKECYYNLNDASLCDNVLAPNVTKQECCC--TSGAGWGDNCEIFPCPVLG 56
Score = 31.5 bits (71), Expect = 0.051
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 47 GPCYTKVVNDMCQGQLEGVVCTKQLCCATVGRAWGHPCE--HCPAQ 90
CY + + + TKQ CC T G WG CE CP
Sbjct: 10 KECYYNLNDASLCDNVLAPNVTKQECCCTSGAGWGDNCEIFPCPVL 55
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 37.7 bits (86), Expect = 0.002
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 1/93 (1%)
Query: 103 SGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNE 162
C + +EC C G C + C C G + DT +
Sbjct: 38 ENTCEEXNECXXETLGXACGE-FGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQY 96
Query: 163 CREEPNICANGKCVNTDGGFYCICNPGFIPTQD 195
+ + ++ C C G +P +
Sbjct: 97 XNCGESGECIVEYLSEIQSAGCSCAIGXVPNPE 129
Score = 32.7 bits (73), Expect = 0.090
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 4/104 (3%)
Query: 61 QLEGVVCTKQLCCATVGRAWGHPCEHCPAQLDCDEGHLKNIHSGQCVDIDECEAVPDIDE 120
L C +C G L + + G + ++ E
Sbjct: 83 TLXEDTCVLDVCQYXNCGESGECIVEY---LSEIQSAGCSCAIGXVPNPEDEXXCTXTGE 139
Query: 121 CEAVPGLC-RGGRCINTPGSFTCECARGKSRNPDTNACEDRNEC 163
C N G + C+C G + + + N C +
Sbjct: 140 TACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183
Score = 30.8 bits (68), Expect = 0.37
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 168 NICANGKCVNTDGGFYCICNPGFIPTQDR 196
IC NG+ V F C+CN G + +
Sbjct: 11 TICXNGQLVQMSNHFXCMCNEGLVHLSEN 39
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 36.4 bits (83), Expect = 0.009
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 118 IDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNEC 163
++EC G C C N+ G+F C C G PD +C+
Sbjct: 1 VNECAE-EGYC-SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPE 44
Score = 34.1 bits (77), Expect = 0.049
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 161 NECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLTSDNQCKNK 220
NEC E C+ C N++G F C C G+ DR SC + +
Sbjct: 2 NEC-AEEGYCSQ-GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVL 59
Query: 221 LP 222
Sbjct: 60 PH 61
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 34.9 bits (80), Expect = 0.012
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 116 PDIDECEAVPG--LCRGGRCINTPGSFTCECARGKSRNPDTNACEDRN 161
DIDEC+ PG C N G F C C G + + C +++
Sbjct: 122 EDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 34.5 bits (79), Expect = 0.018
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 154 TNACEDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDA 202
D + + C N GGFYC C G++ +++ +C +
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 34.7 bits (80), Expect = 0.012
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 15/94 (15%)
Query: 107 VDIDECEAVP---DIDECEAVP----GLCR--GGRCINTPGSFTCECARGKSRNPDTNAC 157
++ C P G C +T + C+C RG + +
Sbjct: 38 SVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFN---GIHCQ 94
Query: 158 EDRNECREEPNICANG-KCVNTDGGFYCICNPGF 190
+ NEC EP C NG C + + C C F
Sbjct: 95 HNINECEVEP--CKNGGICTDLVANYSCECPGEF 126
Score = 30.5 bits (69), Expect = 0.33
Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 24/92 (26%)
Query: 119 DECEAVPGLCR-GGRCIN--TPGSFTCECARG---------KSRNPDTNACEDRNECREE 166
D C+ P C GG C+ GSF+CEC G D C
Sbjct: 1 DICDPNP--CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPC--T 56
Query: 167 PNICANG--------KCVNTDGGFYCICNPGF 190
PN C NG +T G+ C C GF
Sbjct: 57 PNPCHNGGTCEISEAYRGDTFIGYVCKCPRGF 88
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 35.6 bits (81), Expect = 0.019
Identities = 19/109 (17%), Positives = 27/109 (24%)
Query: 100 NIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACED 159
++ + + +EC + G C G F C C S N D C
Sbjct: 247 HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 306
Query: 160 RNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCY 208
A + V + I P R D Y
Sbjct: 307 PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLY 355
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 31.2 bits (71), Expect = 0.038
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 175 CVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C C C G+ + +CI C
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPYPC 47
Score = 29.3 bits (66), Expect = 0.20
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 133 CINTPGSFTCECARGKSRNPDTNACEDRNEC 163
C S C CARG + + AC
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 30.8 bits (70), Expect = 0.048
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 175 CVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C C C G++ D SC+ + C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERFPC 44
Score = 26.9 bits (60), Expect = 1.1
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 133 CINTPGSFTCECARGKSRNPDTNACEDRNEC 163
C C CA G D+ +C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 30.5 bits (70), Expect = 0.054
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 117 DIDECEAVPGLCR-GGRCINTPGSFTCECARG 147
D D+CE+ P C GG C + S+ C C G
Sbjct: 2 DGDQCESNP--CLNGGSCKDDINSYECWCPFG 31
Score = 25.5 bits (57), Expect = 2.8
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 159 DRNECREEPNICAN-GKCVNTDGGFYCICNPGF 190
D ++C E N C N G C + + C C GF
Sbjct: 2 DGDQC--ESNPCLNGGSCKDDINSYECWCPFGF 32
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 34.0 bits (77), Expect = 0.071
Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 18/115 (15%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICAN-GKC 175
+ A+P + + P + CE E E +C N G C
Sbjct: 158 RVQSSLALPVDSGEVKLDDEPPNSGGGSP-----------CEAGEEG--EGGVCLNGGVC 204
Query: 176 VNTDGGFYCIC-NPGF---IPTQDRMSCIDARQGSCYTSLTSDNQCKNKLPIRLS 226
D C C GF +Q + I +GS Y ++
Sbjct: 205 SVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEIT 259
Score = 32.1 bits (72), Expect = 0.30
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 87 CPAQLDCDEGHLKNIHSGQCVDIDECEAVPDIDECEAV----PGLCR-GGRCINTPGSFT 141
+ + SG+ DE CEA G+C GG C
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 142 CECA----RGKSRNPDTNAC 157
C+C+ RGK +
Sbjct: 213 CDCSRTGFRGKDCSQGKEEY 232
Score = 29.4 bits (65), Expect = 2.0
Identities = 10/84 (11%), Positives = 19/84 (22%), Gaps = 6/84 (7%)
Query: 130 GGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICAN-GKCVNTDGGFYCICNP 188
G+ + + G +C N C N G C + + C C+
Sbjct: 592 DGQSKDIRQMAEVQSTAG-----VKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSG 646
Query: 189 GFIPTQDRMSCIDARQGSCYTSLT 212
+ +
Sbjct: 647 TGYLGRSCEREATVLSYDGSMFMK 670
Score = 27.5 bits (60), Expect = 6.7
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 3/83 (3%)
Query: 145 ARGKSRNPDTNACEDRNECREEPNICAN-GKCVNTDGGFYCICNPGFIPTQDRMSCIDAR 203
A + + C+E+ C+N G C+ GF C C+
Sbjct: 1002 ALFCNGQIERGCEGPSTTCQEDS--CSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Query: 204 QGSCYTSLTSDNQCKNKLPIRLS 226
S + N P +
Sbjct: 1060 IFSKGGGQITYKWPPNDRPSTRA 1082
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism, structural
genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 30.4 bits (68), Expect = 0.13
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 117 DIDECEAVPGLCRGG-RCINTPGSFTC-ECARGKSRNPDTNACEDRNECREEPNICANG 173
D++EC +P C+G +CIN G + C + + + PN C G
Sbjct: 2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPPPVPPAQHPNPCPPG 60
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 32.0 bits (72), Expect = 0.20
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 133 CINTPGS--FTCECARGKSRNPDTNACEDRNEC 163
C+ +P + C C G + C+D N
Sbjct: 281 CLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313
Score = 28.5 bits (63), Expect = 2.8
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 157 CEDRNECREEPNICANGKC------VNTDGGFYCICNPGFIPTQDRMSCID 201
+ R P NG C + C C G ++ +C D
Sbjct: 259 SQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 309
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 31.7 bits (71), Expect = 0.32
Identities = 37/229 (16%), Positives = 60/229 (26%), Gaps = 20/229 (8%)
Query: 82 HPCEHCPAQLDCDEGHLKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFT 141
C DC++G D C A C G CI S+
Sbjct: 159 PQLWACDNDPDCEDGS----DEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECI--HSSWR 212
Query: 142 CECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
C+ D C CR + C++G C+ G C D + C++
Sbjct: 213 CDGGPDCKDKSDEENCAVA-TCRPDEFQCSDGNCI--HGSRQCDREYDCKDMSDEVGCVN 269
Query: 202 ARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMIGEDCLFPLLIS 261
+ +C + I L + C + W DE ++ E S
Sbjct: 270 V----TLCEGPNKFKCHSGECITLDKV--CNMARDCRDWSDEPIKECGTNECLDNNGGCS 323
Query: 262 DARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPM 310
+C +L + C + + C
Sbjct: 324 HVCNDLKI-----GYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN 367
Score = 28.3 bits (62), Expect = 3.9
Identities = 21/145 (14%), Positives = 28/145 (19%), Gaps = 2/145 (1%)
Query: 110 DECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNI 169
DE V C G CI C AR D E + N
Sbjct: 263 DEVGCVNVTLCEGPNKFKCHSGECI--TLDKVCNMARDCRDWSDEPIKECGTNECLDNNG 320
Query: 170 CANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLTSDNQCKNKLPIRLSRKD 229
+ C + G+ C+C GF R T + +
Sbjct: 321 GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 380
Query: 230 CCCGKNMGKAWGDECLQCPMIGEDC 254
Sbjct: 381 QLDPHTKACKAVGSIAYLFFTNRHE 405
Score = 27.5 bits (60), Expect = 6.4
Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 3/141 (2%)
Query: 82 HPCEHCPAQLDCDEGHLKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFT 141
P + +C + C D + C + +
Sbjct: 275 GPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 334
Query: 142 CECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
C C G + CED +EC++ CVN +GG+ C C GF +C
Sbjct: 335 CLCPDGF-QLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKA 391
Query: 202 ARQGSCYTSLTSDNQCKNKLP 222
+ K L
Sbjct: 392 VGSIAYLFFTNRHEVRKMTLD 412
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 30.9 bits (69), Expect = 0.59
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 175 CVNTDGGFYCICNPGFIPTQDRMSCI 200
C+ G C C GF D +CI
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTCI 617
Score = 29.4 bits (65), Expect = 1.9
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 133 CINTPGSFTCECARGKSRNPDTNAC 157
C+ P C C G D C
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTC 616
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 30.4 bits (68), Expect = 0.78
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 152 PDTNACEDRNECREE-PNICANGKCVNTDGGFY-CICNPGFIPTQDRMSCI 200
N CE +C +N + C C G + +D SC+
Sbjct: 265 RGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.0 bits (67), Expect = 0.95
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 146 RGKSRNPDTNACEDRNECREEPNICAN-GKCVNTDGGFYCICNP----GFIPTQDRMSCI 200
N + + + C+N G C+ GF C C+ G + + I
Sbjct: 169 DALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYI 228
Query: 201 DARQGSCYTSLTSDNQCKNKLPIRLS 226
++ G T N + RL+
Sbjct: 229 FSKGGGQITYKWPPNDRPSTRADRLA 254
Score = 27.3 bits (60), Expect = 7.8
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 119 DECEAVPGLCR-GGRCINTPGSFTCECARG 147
C+ C G C+ F+C+C+
Sbjct: 186 TTCQEDS--CSNQGVCLQQWDGFSCDCSMT 213
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 30.3 bits (67), Expect = 1.0
Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 13/211 (6%)
Query: 84 CEHCPAQLDCDEGHLKNIHSGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCE 143
+ PA + + ++I S + + + C+ C G C +
Sbjct: 126 FSNNPALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQK 185
Query: 144 CARGKSRNPDTNACEDRNECREEPNICANG----------KCVNTDGGFYCI--CNPGFI 191
+ + C ++ N CA G C C C P +
Sbjct: 186 LTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLML 245
Query: 192 PTQDRMSCIDARQGSCYTSLTSDNQCKNKLPIRLSRKDC-CCGKNMGKAWGDECLQCPMI 250
+G T +C + CG + + D +C
Sbjct: 246 YNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKC 305
Query: 251 GEDCLFPLLISDARQGSCYTSLTSDNQCKNK 281
C + S+ + N K
Sbjct: 306 EGPCRKVCNGIGIGEFKDSLSINATNIKHFK 336
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 27.8 bits (62), Expect = 1.4
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 133 CINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGK-CVNT--DGGFYCICNPG 189
+ + C C G+++ C E C NG C F C C G
Sbjct: 25 VLRSNRVEYCWCNSGRAQC----HSVPVKSCSEPR--CFNGGTCQQALYFSDFVCQCPEG 78
Query: 190 F 190
F
Sbjct: 79 F 79
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 29.1 bits (65), Expect = 1.6
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 157 CEDRNECREEPNICANGK--CVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLT 212
D +EC+E + + C N GG+YC C G+I D +C + +T T
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRT 175
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 29.4 bits (65), Expect = 1.6
Identities = 21/141 (14%), Positives = 28/141 (19%), Gaps = 2/141 (1%)
Query: 110 DECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNI 169
DE V C G CI C AR D E + N
Sbjct: 245 DEVGCVNVTLCEGPNKFKCHSGECI--TLDKVCNMARDCRDWSDEPIKECGTNECLDNNG 302
Query: 170 CANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLTSDNQCKNKLPIRLSRKD 229
+ C + G+ C+C GF R T + +
Sbjct: 303 GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 362
Query: 230 CCCGKNMGKAWGDECLQCPMI 250
Sbjct: 363 QLDPHTKACKAVGSIAYLFFT 383
Score = 28.2 bits (62), Expect = 4.1
Identities = 38/244 (15%), Positives = 58/244 (23%), Gaps = 16/244 (6%)
Query: 67 CTKQLCCATVGRAWGHPCEHCPAQLDCDEGHLKNIHSGQCVDIDECEAVPDIDECEAVPG 126
C C + C D D D C A
Sbjct: 122 CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEF 181
Query: 127 LCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCIC 186
C G CI S+ C+ D C CR + C++G C+ G C
Sbjct: 182 HCLSGECI--HSSWRCDGGPDCKDKSDEENCA-VATCRPDEFQCSDGNCI--HGSRQCDR 236
Query: 187 NPGFIPTQDRMSCIDARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQ 246
D + C + +C + I L + C + W DE ++
Sbjct: 237 EYDCKDMSDEVGC----VNVTLCEGPNKFKCHSGECITLDKV--CNMARDCRDWSDEPIK 290
Query: 247 CPMIGEDCLFPLLISDARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECL 306
E S +C +L + C + +
Sbjct: 291 ECGTNECLDNNGGCSHVCNDLKI-----GYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ 345
Query: 307 QCPM 310
C
Sbjct: 346 LCVN 349
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 28.9 bits (65), Expect = 1.9
Identities = 12/59 (20%), Positives = 20/59 (33%)
Query: 160 RNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLTSDNQCK 218
+NEC E C+ + C C G+ +D C+ Q +C +
Sbjct: 2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 60
Score = 28.1 bits (63), Expect = 4.0
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 133 CINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKC 175
C+ S+TC CA+G D C ++C
Sbjct: 17 CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 59
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.0 bits (64), Expect = 1.9
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 114 AVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANG 173
A+ DI C+ TCEC + + + + + P + G
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTG---PDCGKCKKNYQGRP--WSPG 341
Query: 174 KCVNTDGGFYCICNPGF 190
+ G C P
Sbjct: 342 SYLPIPKGAANACIPSI 358
Score = 27.5 bits (60), Expect = 7.1
Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 9/63 (14%)
Query: 128 CRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCVNTDGGFYCICN 187
G + P C + N C E C NG C+C
Sbjct: 338 WSPGSYLPIPKGAANACIPS-------ISSIGTNVCDNELLHCQNGG--TCHNNVRCLCP 388
Query: 188 PGF 190
+
Sbjct: 389 AAY 391
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 28.4 bits (63), Expect = 3.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 157 CEDRNECREEPNICANGK--CVNTDGGFYCICNPGFIPTQDRMSCIDARQGSCYTSLT 212
D +EC+E + + C N GG+YC C G+I D +C + +T T
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRT 175
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A
{Anabaena SP}
Length = 388
Score = 28.3 bits (62), Expect = 3.5
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 173 GKCVNTDGGFY-CICNPGFIPTQDRMSCIDARQGSCY 208
++++GG++ C+ G + D+ + RQ +
Sbjct: 26 NHSLDSEGGYFTCLDRQGKVYDTDKFIWLQNRQVWTF 62
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 25.9 bits (57), Expect = 4.5
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 157 CEDRNECREEPNICANGKC-----VNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
+D+ C E NG C +T C C+ G+ D +SC + C
Sbjct: 2 KDDQLICVNE-----NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 52
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 26.4 bits (58), Expect = 6.4
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 116 PDIDECEAV-PGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGK 174
D + A PGL G + P F + R D+ + + N
Sbjct: 19 YDASKVTASGPGLSSYGVPASLPVDFAIDA-RDAGEGLLAVQITDQEGKPKRAIVHDNK- 76
Query: 175 CVNTDGGFYCICNP 188
DG + P
Sbjct: 77 ----DGTYAVTYIP 86
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 27.5 bits (61), Expect = 7.0
Identities = 11/73 (15%), Positives = 16/73 (21%)
Query: 103 SGQCVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNE 162
GQC+ C + + G + C G +A N
Sbjct: 39 QGQCMPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSANIQHNS 98
Query: 163 CREEPNICANGKC 175
N C
Sbjct: 99 KVMSLFKDENFDC 111
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 25.1 bits (55), Expect = 7.1
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 175 CVNT-DGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C N+ D C C G+ +++ SC A C
Sbjct: 13 CKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPC 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.498
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,838,437
Number of extensions: 288288
Number of successful extensions: 1296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 947
Number of HSP's successfully gapped: 316
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.2 bits)