RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11795
(313 letters)
>d1apja_ g.23.1.1 (A:) Fibrillin {Human (Homo sapiens) [TaxId:
9606]}
Length = 74
Score = 54.5 bits (131), Expect = 1e-10
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 44 YRTGPCYTKVVNDMCQGQLEGVVCTKQLCCATVGRAWGHPCEHCPAQ 90
R CY K C ++ CCA G WG PCE CP +
Sbjct: 5 LRMSYCYAKFEGGKCSSPKSRNHSKQECCCALKGEGWGDPCELCPTE 51
Score = 46.8 bits (111), Expect = 6e-08
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 198 SCIDARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMIGED 253
S D R CY +C + S+++CCC G+ WGD C CP ++
Sbjct: 1 SAQDLRMSYCYAKF-EGGKCSSPKSRNHSKQECCCA-LKGEGWGDPCELCPTEPDE 54
Score = 42.6 bits (100), Expect = 2e-06
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 262 DARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMIG 312
D R CY +C + S+++CCC G+ WGD C CP
Sbjct: 4 DLRMSYCYAKF-EGGKCSSPKSRNHSKQECCCA-LKGEGWGDPCELCPTEP 52
>d1uzka3 g.23.1.1 (A:1529-1604) Fibrillin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 48.4 bits (115), Expect = 2e-08
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 45 RTGPCYTKVVNDMCQGQLE-----GVVCTKQLCCATVGRAWGHPCEHCPAQ 90
R+G CY + G GV +K CC ++G+AWG PCE CPA
Sbjct: 2 RSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAV 52
Score = 41.1 bits (96), Expect = 7e-06
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 203 RQGSCYTSLT-----SDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMIGED 253
R G+CY + D C N++ + +S+ CCC ++GKAWG C CP +
Sbjct: 2 RSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC--SLGKAWGTPCEMCPAVNTS 55
Score = 40.7 bits (95), Expect = 1e-05
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 264 RQGSCYTSLT-----SDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCPMIG 312
R G+CY + D C N++ + +S+ CCC ++GKAWG C CP +
Sbjct: 2 RSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC--SLGKAWGTPCEMCPAVN 53
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 47.1 bits (112), Expect = 2e-08
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 159 DRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCI 200
D +EC+ +P +C G C NT+G + C C PG + + +CI
Sbjct: 1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 42
Score = 45.2 bits (107), Expect = 1e-07
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
DIDEC+ P LCRGG C NT GS+ CEC G +P+ +AC
Sbjct: 1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 46.3 bits (110), Expect = 5e-08
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 158 EDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSC 199
ED +EC+E P +C GKC+NT G F C C G+ +D C
Sbjct: 1 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
Score = 45.9 bits (109), Expect = 6e-08
Identities = 25/42 (59%), Positives = 30/42 (71%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACE 158
DIDEC+ +PGLC+GG+CINT GSF C C G N DT C+
Sbjct: 2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 43
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 42.2 bits (99), Expect = 2e-06
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 159 DRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
D NEC +P C +G CVNT G + C C P F R+ C+D
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43
Score = 39.9 bits (93), Expect = 1e-05
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACED 159
D++EC P C G C+NTPGS+ C+C NP C D
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 41.4 bits (97), Expect = 3e-06
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 159 DRNECREEPNICANGKCVNTDGGFYCICNPGF 190
D +ECR P++C G+CVNT G F C C+ G+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGY 33
Score = 39.4 bits (92), Expect = 1e-05
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARG 147
DIDEC P LC G+C+NTPG F C+C G
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEG 32
>d1ksqa_ g.23.1.1 (A:) Transforming growth factor-beta binding
protein-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 39.1 bits (91), Expect = 3e-05
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 201 DARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCP 248
+ CY +L + C N L +++++CCC G WGD C P
Sbjct: 6 KEEKKECYYNLNDASLCDNVLAPNVTKQECCCT--SGAGWGDNCEIFP 51
Score = 39.1 bits (91), Expect = 3e-05
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 262 DARQGSCYTSLTSDNQCKNKLPIRLSRKDCCCGKNMGKAWGDECLQCP 309
+ CY +L + C N L +++++CCC G WGD C P
Sbjct: 6 KEEKKECYYNLNDASLCDNVLAPNVTKQECCCT--SGAGWGDNCEIFP 51
Score = 36.0 bits (83), Expect = 5e-04
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 47 GPCYTKVVN-DMCQGQLEGVVCTKQLCCATVGRAWGHPCEHCPA 89
CY + + +C L V TKQ CC T G WG CE P
Sbjct: 10 KECYYNLNDASLCDNVLAPNV-TKQECCCTSGAGWGDNCEIFPC 52
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 37.8 bits (88), Expect = 5e-05
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 156 ACEDRNECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
+ D +EC +EP++C +G+C+NTDG + C C G+ C+D
Sbjct: 1 SAVDMDEC-KEPDVCKHGQCINTDGSYRCECPFGY--ILAGNECVD 43
Score = 34.4 bits (79), Expect = 0.001
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 106 CVDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACED 159
VD+DEC P +C+ G+CINT GS+ CEC G + C D
Sbjct: 2 AVDMDEC----------KEPDVCKHGQCINTDGSYRCECPFGYILAGNE--CVD 43
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 38.0 bits (88), Expect = 6e-05
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 107 VDIDECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACE 158
VD+DEC + E P C N G + C C G D ++C+
Sbjct: 2 VDLDECAS--RSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
Score = 35.3 bits (81), Expect = 5e-04
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 153 DTNACEDRN-ECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSC 199
D + C R+ E+P C N GG++C C PG+ +DR SC
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 37.2 bits (86), Expect = 9e-05
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 118 IDECEAVPGLCRG--GRCINTPGSFTCECARGKSRNPDTNACEDR 160
IDEC+ PG C N G F C C G + + C ++
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 45
Score = 34.1 bits (78), Expect = 0.001
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 161 NECREEPNICA--NGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
+EC+ P + C N GGFYC C G++ +++ +C +
Sbjct: 2 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 35.5 bits (82), Expect = 4e-04
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 158 EDRNECREEPNICAN-GKCVNTDGGFYCICNPGF 190
+D +EC N C + GKC+NT G F C C G+
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGY 34
Score = 34.7 bits (80), Expect = 6e-04
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 117 DIDECEAVPGLCR-GGRCINTPGSFTCECARG 147
D+DEC C G+CINT GSF C+C +G
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQG 33
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 34.1 bits (78), Expect = 0.001
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 161 NECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSC 199
NEC + ++ + C N GG++C C P + D +C
Sbjct: 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
Score = 30.2 bits (68), Expect = 0.022
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 119 DECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNAC 157
+EC + C N G + C C + D C
Sbjct: 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 33.6 bits (77), Expect = 0.001
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 118 IDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTNACED 159
IDEC P C C+N G + C+C G +P T AC+
Sbjct: 1 IDEC-QDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKA 40
Score = 32.0 bits (73), Expect = 0.006
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 161 NECREEPNICANGKCVNTDGGFYCICNPGFIPTQDRMSCID 201
+EC ++P+ C + CVN +GG+ C C GF +C
Sbjct: 2 DEC-QDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKA 40
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 32.2 bits (73), Expect = 0.006
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 161 NECREEPNICA--NGKCVNTDGGFYCICNPGFIPTQDRMSC 199
+ECR + C N GG+YC C G+I Q++ +C
Sbjct: 2 DECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTC 42
Score = 31.8 bits (72), Expect = 0.007
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 118 IDECEAVPGLCRG--GRCINTPGSFTCECARGKSRNPDTNAC 157
+DEC G C N G + C C G + + + C
Sbjct: 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTC 42
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 31.3 bits (71), Expect = 0.011
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 175 CVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C C C G+ + +CI C
Sbjct: 14 CHEEQNSVVCSCARGYTLADNGKACIPTGPYPC 46
Score = 28.2 bits (63), Expect = 0.14
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 133 CINTPGSFTCECARGKSRNPDTNACEDRNEC 163
C S C CARG + + AC
Sbjct: 14 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 44
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 31.3 bits (71), Expect = 0.013
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 175 CVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C C C G++ D SC+ + C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERFPC 44
Score = 29.4 bits (66), Expect = 0.055
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 133 CINTPGSFTCECARGKSRNPDTNACEDRNEC 163
C C CA G D+ +C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 31.3 bits (71), Expect = 0.015
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 175 CVNTDGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C+ G C C PG+ D + C A + C
Sbjct: 13 CLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPC 45
Score = 28.6 bits (64), Expect = 0.11
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 133 CINTPGSFTCECARGKSRNPDTNACEDRNEC 163
C+ G C CA G D C +
Sbjct: 13 CLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 30.2 bits (68), Expect = 0.029
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 111 ECEAVPDIDECEAVPGLCRGGRCINTPGSFTCECARG 147
+C +P C ++ C G CI+ GSF+C+C G
Sbjct: 1 QCLVLPLEHPCASLC--CGHGTCIDGIGSFSCDCRSG 35
Score = 27.8 bits (62), Expect = 0.20
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 161 NECREEPNICANGKCVNTDGGFYCICNPGF 190
+ C C +G C++ G F C C G+
Sbjct: 9 HPC--ASLCCGHGTCIDGIGSFSCDCRSGW 36
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 30.1 bits (68), Expect = 0.029
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARGKSRNPDTN 155
DIDEC G C G C N PG+F C C +
Sbjct: 1 DIDEC-ENGGFC-SGVCHNLPGTFECICGPDSALAGQIG 37
Score = 29.7 bits (67), Expect = 0.035
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 159 DRNECREEPNICANGKCVNTDGGFYCICNPGF 190
D +EC E C +G C N G F CIC P
Sbjct: 1 DIDEC-ENGGFC-SGVCHNLPGTFECICGPDS 30
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 29.1 bits (65), Expect = 0.069
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 168 NICANGKCVNTDGGFYCICNPGFIP 192
N C NG C N GGF C C GF P
Sbjct: 8 NPCGNGTCKNVIGGFECTCEEGFEP 32
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.076
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARG 147
D D+CE+ P L GG C + S+ C C G
Sbjct: 2 DGDQCESNPCL-NGGSCKDDINSYECWCPFG 31
Score = 27.7 bits (62), Expect = 0.19
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 159 DRNECREEPNICAN-GKCVNTDGGFYCICNPGF 190
D ++C E N C N G C + + C C GF
Sbjct: 2 DGDQC--ESNPCLNGGSCKDDINSYECWCPFGF 32
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 28.5 bits (64), Expect = 0.093
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 117 DIDECEAVPGLCRGGRCINTPGSFTCECARG 147
D D+C + P GG C + S+ C C
Sbjct: 1 DGDQCASSPCQ-NGGSCKDQLQSYICFCLPA 30
Score = 27.0 bits (60), Expect = 0.36
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 159 DRNECREEPNICANG-KCVNTDGGFYCICNPGF 190
D ++C + C NG C + + C C P F
Sbjct: 1 DGDQC--ASSPCQNGGSCKDQLQSYICFCLPAF 31
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 27.9 bits (62), Expect = 0.17
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 163 CREEPNIC-ANGKCVNTDGGFYCICNPGFI 191
C + C + +C + GF C C +
Sbjct: 2 CANNRHQCSVHAECRDYATGFCCRCVANYT 31
Score = 24.4 bits (53), Expect = 3.2
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 132 RCINTPGSFTCECARG 147
C + F C C
Sbjct: 14 ECRDYATGFCCRCVAN 29
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 27.8 bits (62), Expect = 0.20
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 161 NECREEPNICANGKCVNTDGGFYCICNPGF 190
NEC + C++ C + G+ C+C GF
Sbjct: 3 NECLDNNGGCSH-VCNDLKIGYECLCPDGF 31
Score = 26.6 bits (59), Expect = 0.42
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 119 DECEAVPGLCRGGRCINTPGSFTCECARG 147
+EC G C C + + C C G
Sbjct: 3 NECLDNNGGC-SHVCNDLKIGYECLCPDG 30
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.28
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 118 IDECEAVPGLCRGGRCINTPGSFTCECARG 147
++EC + P C++ G F C C G
Sbjct: 1 VNECVSNPCQ-NDATCLDQIGEFQCICMPG 29
Score = 26.2 bits (58), Expect = 0.75
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 161 NECREEPNICANG-KCVNTDGGFYCICNPGF 190
NEC N C N C++ G F CIC PG+
Sbjct: 2 NEC--VSNPCQNDATCLDQIGEFQCICMPGY 30
>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 27.6 bits (61), Expect = 0.83
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 125 PGLCRGGRCINTPGSFTCECARGKSRNPDTNACEDRNECREEPNICANGKCV 176
PGL G + P FT + R T D ++ NI NG
Sbjct: 12 PGLNASGIPASLPVEFTIDA-RDAGEGLLTVQILDPEGKPKKANIRDNGDGT 62
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 26.3 bits (58), Expect = 0.85
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 175 CVNT-DGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C N+ D C C G+ +++ SC A C
Sbjct: 14 CKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPC 47
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 25.4 bits (56), Expect = 1.1
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 161 NECREEPNICAN-GKCVNTDGGFYCICNPGF 190
++C P C N GKC + G + C C GF
Sbjct: 1 DQCETSP--CQNQGKCKDGLGEYTCTCLEGF 29
Score = 25.0 bits (55), Expect = 1.6
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 119 DECEAVPGLCRGGRCINTPGSFTCECARG 147
D+CE P G+C + G +TC C G
Sbjct: 1 DQCETSPCQ-NQGKCKDGLGEYTCTCLEG 28
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.0 bits (55), Expect = 1.8
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 161 NECREEPNICAN-GKCVNTDGGFYCICNPGF 190
+EC P C + G+C++ F C C GF
Sbjct: 1 DECASSP--CLHNGRCLDKINEFQCECPTGF 29
Score = 24.6 bits (54), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 119 DECEAVPGLCRGGRCINTPGSFTCECARG 147
DEC + P L GRC++ F CEC G
Sbjct: 1 DECASSPCL-HNGRCLDKINEFQCECPTG 28
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 25.2 bits (55), Expect = 2.1
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 175 CVNT-DGGFYCICNPGFIPTQDRMSCIDARQGSC 207
C + C C+ G+ D +SC + C
Sbjct: 13 CSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 46
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 24.1 bits (52), Expect = 5.5
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 171 ANGKCVNTDGGFYCICNPGFIPTQDRMSCI 200
+ F C C G + +D SC+
Sbjct: 20 PAPQINPHSPKFTCACPDGMLLARDMRSCL 49
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 24.2 bits (52), Expect = 6.4
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 117 DIDECEAVP----GLCRGGRCINTPGSFTCECARG 147
E E G C + ++ P + C+C G
Sbjct: 5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPG 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.498
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,291,487
Number of extensions: 66652
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 138
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)