BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11797
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 36/158 (22%)
Query: 88 VDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQ---FVEFRIILSM 144
DVNEC L+ +C +G CVN GSY C+C F+L+ C+ +++ R
Sbjct: 1 TDVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIR----- 54
Query: 145 PKAENSVNNNNNQRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQLCP 204
P+ +N +N+ + + V++ CCC++G AWG C++CP
Sbjct: 55 PRGDNGDTACSNE---------------------IGVGVSKASCCCSLGKAWGTPCEMCP 93
Query: 205 TRGSQEYTDLC------LESGLTVDGRDIDECVTIPAV 236
+ EY LC + +TV DIDEC +P +
Sbjct: 94 AVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGL 131
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
D++EC+ C G+C+N GS++C C G+ L+ D + C
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTA 78
DV+EC P +C N GSY+C CPP ++ + + DTR+
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFE---LNPTRVGCVDTRSG 47
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 36/158 (22%)
Query: 88 VDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQ---FVEFRIILSM 144
DVNEC L+ +C +G CVN GSY C+C F+L+ C+ +++ R
Sbjct: 1 TDVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIR----- 54
Query: 145 PKAENSVNNNNNQRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQLCP 204
P+ +N +N+ + + V++ CCC++G AWG C+ CP
Sbjct: 55 PRGDNGDTACSNE---------------------IGVGVSKASCCCSLGKAWGTPCEXCP 93
Query: 205 TRGSQEYTDLC------LESGLTVDGRDIDECVTIPAV 236
+ EY LC + +TV DIDEC +P +
Sbjct: 94 AVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGL 131
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
D++EC+ C G+C+N GS++C C G+ L+ D + C
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTA 78
DV+EC P +C N GSY+C CPP ++ + + DTR+
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFE---LNPTRVGCVDTRSG 47
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 21/104 (20%)
Query: 32 DECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVN 91
+EC C C +L Y C CP G+Q V C D++
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-------------------RRCEDID 41
Query: 92 ECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
EC+ + D+C+ CVNLEG Y+C+CE GF+L K C G
Sbjct: 42 ECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 83
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 21/59 (35%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHS 66
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 37 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHT 74
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 32 DECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVN 91
+EC C C +L Y C CP G+Q V C D++
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-------------------RRCEDID 81
Query: 92 ECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFV 136
EC+ + D+C+ CVNLEG Y+C+CE GF+L K C G
Sbjct: 82 ECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA 124
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 21/59 (35%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHS 66
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 77 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHT 114
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 31 VDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDV 90
+EC C C +L Y C CP G+Q V C D+
Sbjct: 312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-------------------RRCEDI 352
Query: 91 NECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFV 136
+EC+ + D+C+ CVNLEG Y+C+CE GF+L K C G
Sbjct: 353 DECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA 396
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 21/65 (32%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHST 67
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 349 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHTK 387
Query: 68 VAIAT 72
A
Sbjct: 388 ACKAV 392
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 31 VDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDV 90
+EC C C +L Y C CP G+Q V C D+
Sbjct: 294 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-------------------RRCEDI 334
Query: 91 NECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFV 136
+EC+ + D+C+ CVNLEG Y+C+CE GF+L K C G
Sbjct: 335 DECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA 378
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 21/65 (32%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHST 67
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 331 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHTK 369
Query: 68 VAIAT 72
A
Sbjct: 370 ACKAV 374
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 26 KNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSH 85
+ + +EC C + C +L Y C CP G+Q V
Sbjct: 24 QGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-------------------R 64
Query: 86 ECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
C D++EC+ + D+C+ CVNLEG Y+C+CE GF+L K C
Sbjct: 65 RCEDIDECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 21/61 (34%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHST 67
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 66 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHTK 104
Query: 68 V 68
Sbjct: 105 A 105
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 29 IDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECV 88
+ +EC C + C +L Y C CP G+Q V C
Sbjct: 3 MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-------------------RRCE 43
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
D++EC+ + D+C+ CVNLEG Y+C+CE GF+L K C
Sbjct: 44 DIDECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 21/61 (34%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHST 67
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 42 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHTK 80
Query: 68 V 68
Sbjct: 81 A 81
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 23/94 (24%)
Query: 29 IDVDECRTPANTCKFS-CKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHEC 87
+D+DEC+ P + CK C N GSY C CP GY +EC
Sbjct: 3 VDMDECKEP-DVCKHGQCINTDGSYRCECPFGYILA--------------------GNEC 41
Query: 88 VDVNECELNLDSCANGRCVNLEGSYRCECERGFK 121
VD +EC + + C NG C N+ G + C CE GF+
Sbjct: 42 VDTDECSVG-NPCGNGTCKNVIGGFECTCEEGFE 74
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 88 VDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCL 130
VD++EC+ D C +G+C+N +GSYRCEC G+ L+ G +C+
Sbjct: 3 VDMDECK-EPDVCKHGQCINTDGSYRCECPFGYILA--GNECV 42
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 30 DVDECRTPANTC-KFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECV 88
D+DECR + C + C N G + C C GY+ S + C+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYE----SGFMMMKN-------------CM 44
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCL 130
D++EC+ + C G C N EGSYRCEC G +LS + C+
Sbjct: 45 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 24/85 (28%)
Query: 10 DVDECRTPANTC----------KFSCK-------------NLIDVDECRTPANTCKFS-C 45
D+DECR + C F CK N +D+DEC+ C+ C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 46 KNLIGSYMCTCPPGYQQVTHSTVAI 70
N GSY C CPPG+Q + + I
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISACI 86
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 21/104 (20%)
Query: 26 KNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSH 85
+ + +EC C C +L Y C CP G+Q V
Sbjct: 24 QGAMGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-------------------R 64
Query: 86 ECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
C D++EC+ + D+C+ CVNLEG Y+C+CE GF+L K C
Sbjct: 65 RCEDIDECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 21/61 (34%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHST 67
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 66 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHTK 104
Query: 68 V 68
Sbjct: 105 A 105
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 30 DVDECRTPANTCKFS-CKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECV 88
DVDEC + C + CKN+ G + C CP GY+ KS C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNL------------------KSKSCE 43
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECE--RGFKLSLDGKQC 129
D++EC N+ CA CVN G Y C C+ +GFKL+ D K C
Sbjct: 44 DIDECSENM--CAQ-LCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 21/101 (20%)
Query: 29 IDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECV 88
+ +EC C C +L Y C CP G+Q V C
Sbjct: 3 MGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-------------------RRCE 43
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
D++EC+ + D+C+ CVNLEG Y+C+CE GF+L K C
Sbjct: 44 DIDECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 21/61 (34%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHST 67
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 42 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHTK 80
Query: 68 V 68
Sbjct: 81 A 81
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 31 VDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDV 90
+EC C C +L Y C CP G+Q V C D+
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-------------------RRCEDI 42
Query: 91 NECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
+EC+ + D+C+ CVNLEG Y+C+CE GF+L K C
Sbjct: 43 DECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 21/65 (32%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHST 67
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 39 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHTK 77
Query: 68 VAIAT 72
A
Sbjct: 78 ACKAV 82
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 31 VDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDV 90
+EC C C +L Y C CP G+Q V C D+
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-------------------RRCEDI 42
Query: 91 NECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
+EC+ + D+C+ CVNLEG Y+C+CE GF+L K C
Sbjct: 43 DECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 21/61 (34%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHST 67
C D+DEC+ P +TC C NL G Y C C G+Q H+
Sbjct: 39 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQLDPHTK 77
Query: 68 V 68
Sbjct: 78 A 78
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 83 KSHECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCL 130
K +C D++ECE+ C NG CVN GS++C+C G L G+ CL
Sbjct: 100 KGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 40/152 (26%)
Query: 88 VDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSMPKA 147
D++ECE + C NG C N GS+ CEC L C+
Sbjct: 2 ADIDECESS--PCINGVCKNSPGSFICECSSESTLDPTKTICI----------------- 42
Query: 148 ENSVNNNNNQRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQLCPTRG 207
G C++++ +GRC + A L + CC ++G AWG C LC
Sbjct: 43 --------ETIKGTCWQTVIDGRCEININGATL----KSQCCSSLGAAWGSPCTLC---- 86
Query: 208 SQEYTDLCLESGLTVDG---RDIDECVTIPAV 236
+ +C + + G DIDEC P V
Sbjct: 87 --QVDPICGKGYSRIKGTQCEDIDECEVFPGV 116
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 54/142 (38%), Gaps = 54/142 (38%)
Query: 9 SDVDECRTPANTCK-----------FSCKNL---------IDVDECRTPANTCKFSCKNL 48
DVDEC AN C+ F C+ L IDV+EC + +C +
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 49 IGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCA------N 102
IG + C C PGY+ V CE+N D CA N
Sbjct: 63 IGEFQCICMPGYEGV----------------------------HCEVNTDECASSPCLHN 94
Query: 103 GRCVNLEGSYRCECERGFKLSL 124
GRC++ ++CEC GF L
Sbjct: 95 GRCLDKINEFQCECPTGFTGHL 116
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 54/141 (38%), Gaps = 54/141 (38%)
Query: 10 DVDECRTPANTCK-----------FSCKNL---------IDVDECRTPANTCKFSCKNLI 49
DVDEC AN C+ F C+ L IDV+EC + +C + I
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 50 GSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCA------NG 103
G + C C PGY+ V CE+N D CA NG
Sbjct: 62 GEFQCICMPGYEGV----------------------------HCEVNTDECASSPCLHNG 93
Query: 104 RCVNLEGSYRCECERGFKLSL 124
RC++ ++CEC GF L
Sbjct: 94 RCLDKINEFQCECPTGFTGHL 114
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 50/110 (45%), Gaps = 21/110 (19%)
Query: 16 TPANTCKFSCKNLIDVDECRTPANTC--KFS-CKNLIGSYMCTCPPGYQQVTHSTVAIAT 72
TP TC D++EC T + KFS C N GSY C C PGY+ V+ A
Sbjct: 36 TPMETCD-------DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSG-----AK 83
Query: 73 TDTRTAESGGKSHECVDVNECELNLDSCANGR-CVNLEGSYRCECERGFK 121
T +E + C DV+EC C + C N GSY C C G+K
Sbjct: 84 TFKNESE-----NTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWK 128
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 32 DECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVN 91
+ C C C+ + G+ CTC GY+ T D RT C DVN
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYR---------LTEDGRT---------CQDVN 45
Query: 92 ECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKG 133
EC C+ G C N EG+++C CE G++L D + C G
Sbjct: 46 ECAEE-GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALG 85
>pdb|1APJ|A Chain A, Nmr Study Of The Transforming Growth Factor Beta Binding
Protein-Like Domain (Tb Module8-Cys Domain), Nmr, 21
Structures
Length = 74
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 158 RLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTM-GMAWGPQCQLCPTRGSQEYTDLC- 215
R+ +CY G+C P ++ +CCC + G WG C+LCPT + + +C
Sbjct: 6 RMSYCYAKFEGGKCSSPKS----RNHSKQECCCALKGEGWGDPCELCPTEPDEAFRQICP 61
Query: 216 LESGLTVDGRD 226
SG+ V D
Sbjct: 62 YGSGIIVGPDD 72
>pdb|1KSQ|A Chain A, Nmr Study Of The Third Tb Domain From Latent Transforming
Growth Factor-Beta Binding Protein-1
Length = 75
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 179 LLMEVTRMDCCCTMGMAWGPQCQL--CPTRGSQEYTDLC 215
L VT+ +CCCT G WG C++ CP G+ E+T++C
Sbjct: 26 LAPNVTKQECCCTSGAGWGDNCEIFPCPVLGTAEFTEMC 64
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 21/91 (23%)
Query: 44 SCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANG 103
SC++ I Y CTC PGY+ S +A + + G H C+ E
Sbjct: 18 SCQDSIWGYTCTCSPGYEG---SNCELAKNECHPERTDGCQHFCLPGQE----------- 63
Query: 104 RCVNLEGSYRCECERGFKLSLDGKQCLGKGQ 134
SY C C +G++L D KQC+ Q
Sbjct: 64 -------SYTCSCAQGYRLGEDHKQCVPHDQ 87
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 49/124 (39%), Gaps = 26/124 (20%)
Query: 30 DVDECRTPAN---TCKFSCKNLIGSYMCTCPPGY--QQVTHSTVAIATTDTRTAESGGKS 84
DVDECRT C C +G Y C+C GY Q H+ A+ + T SG S
Sbjct: 119 DVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCSGQVFTGRSGFLS 178
Query: 85 HECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSM 144
+ + L SCA Y E GF ++LD FVE +
Sbjct: 179 --SPEYPQPYPKLSSCA----------YNIRLEEGFSITLD---------FVESFDVEMH 217
Query: 145 PKAE 148
P+A+
Sbjct: 218 PEAQ 221
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 29 IDVDECRT--------PANTCKFSCKNLIGSYMCTCPPGY--QQVTHSTVA 69
+D+DEC + P C+ C N +G Y C+C PGY Q+ HS A
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D D+C T + CK+ +G Y CTC G++ GK+ E
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE--------------------GKNCELFT 40
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C + S C C RG+ L+ +GK C+ G +
Sbjct: 41 RKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 85
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D D+C T + CK+ +G Y CTC G++ GK+ E
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE--------------------GKNCELFT 80
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C + S C C RG+ L+ +GK C+ G +
Sbjct: 81 RKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 125
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D D+C T + CK+ +G Y CTC G++ GK+ E
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE--------------------GKNCELFT 85
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C + S C C RG+ L+ +GK C+ G +
Sbjct: 86 RKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 130
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D D+C T + CK+ +G Y CTC G++ GK+ E
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE--------------------GKNCELFT 42
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C + S C C RG+ L+ +GK C+ G +
Sbjct: 43 RKLCSLDNGDC-DQFCHEEQASVVCSCARGYTLADNGKACIPTGPY 87
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D D+C T + CK+ +G Y CTC G++ GK+ E
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE--------------------GKNCELFT 41
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C + S C C RG+ L+ +GK C+ G +
Sbjct: 42 RKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 86
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 89 DVNECELNLDSCAN-GRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSMPKA 147
D ++CE + C N G+C + G Y C C GF +GK C F L
Sbjct: 2 DGDQCETS--PCQNQGKCKDGLGEYTCTCLEGF----EGKNCE---LFTRKLCSLDNGDC 52
Query: 148 ENSVNNNNNQRLGFCYRSLT---NGRCVLPTGP 177
+ + N + C R T NG+ +PTGP
Sbjct: 53 DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 85
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D D+C T + CK+ +G Y CTC G++ GK+ E
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE--------------------GKNCELFT 42
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C + S C C RG+ L+ +GK C+ G +
Sbjct: 43 RKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 87
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 89 DVNECELNLDSCAN-GRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSMPKA 147
D ++CE + C N G+C + G Y C C GF +GK C F L
Sbjct: 3 DGDQCETS--PCQNQGKCKDGLGEYTCTCLEGF----EGKNCE---LFTRKLCSLDNGDC 53
Query: 148 ENSVNNNNNQRLGFCYRSLT---NGRCVLPTGP 177
+ + N + C R T NG+ +PTGP
Sbjct: 54 DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 86
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D D+C T + CK+ +G Y CTC G++ GK+ E
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE--------------------GKNCELFT 40
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C + S C C RG+ L+ +GK C+ G +
Sbjct: 41 RKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 85
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 89 DVNECELNLDSCAN-GRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSMPKA 147
D ++CE + C N G+C + G Y C C GF +GK C F L
Sbjct: 1 DGDQCETS--PCQNQGKCKDGLGEYTCTCLEGF----EGKNCE---LFTRKLCSLDNGDC 51
Query: 148 ENSVNNNNNQRLGFCYRSLT---NGRCVLPTGP 177
+ + N + C R T NG+ +PTGP
Sbjct: 52 DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 84
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D D+C T + CK+ +G Y CTC G++ GK+ E
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE--------------------GKNCELFT 80
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C + S C C RG+ L+ +GK C+ G +
Sbjct: 81 RKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 125
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
Query: 29 IDVDECRTPAN---TCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRT 77
+DVDEC+ + +C C N IG Y C+C GY I TD RT
Sbjct: 119 VDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGY---------ILHTDNRT 161
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 87 CVDVNECELNLD---SCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
VDV+EC+ D SC + C N G Y C C G+ L D + C
Sbjct: 118 AVDVDECKEREDEELSC-DHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 21/106 (19%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D D+C T + CK +G Y CTC G++ GK+ E
Sbjct: 2 DGDQCETSPCQNQGKCKXGLGEYTCTCLEGFE--------------------GKNCELFT 41
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C + S C C RG+ L+ +GK C+ G +
Sbjct: 42 RKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 86
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
Query: 29 IDVDECRTPAN---TCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRT 77
+DVDEC+ + +C C N IG Y C+C GY I TD RT
Sbjct: 119 VDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGY---------ILHTDNRT 161
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 87 CVDVNECELNLD---SCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
VDV+EC+ D SC + C N G Y C C G+ L D + C
Sbjct: 118 AVDVDECKEREDEELSC-DHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 30 DVDECRTPANT-CKFSCKNLIGSYMCTCPPGY 60
D++EC + C C N IG Y C+CPP Y
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEY 147
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
D+NEC +D + C N G Y C C + L D K C
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKG 133
VNEC C+ G C N EG+++C CE G++L D + C G
Sbjct: 1 VNECAEE-GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALG 42
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 30 DVDECRTP---ANTCKFSCKNLIGSYMCTCPPGY 60
D+DEC+ A TC C N +G + C+C GY
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGY 156
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 102 NGRCVNLEGSYRCECERGFKLSLDGKQCLG 131
N C N+EG Y+C+C GF + CLG
Sbjct: 150 NEVCKNVEGVYKCQCMEGFTFDKEKNVCLG 179
>pdb|1Z1Y|A Chain A, Crystal Structure Of Methylated Pvs25, An Ookinete Protein
From Plasmodium Vivax
pdb|1Z1Y|B Chain B, Crystal Structure Of Methylated Pvs25, An Ookinete Protein
From Plasmodium Vivax
Length = 186
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 102 NGRCVNLEGSYRCECERGFKLSLDGKQCLG 131
N C N+EG Y C+C GF + CLG
Sbjct: 150 NEVCXNVEGVYXCQCMEGFTFDXEXNVCLG 179
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 91 NECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQ 134
NEC C+ + SY C C +G++L D KQC+ Q
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ 46
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 41 CKFSCKNLIG-SYMCTCPPGYQQVTH----------STVAIATTDTRTAESG-------- 81
C++ C+ L SY+C C G+ + H T A D T S
Sbjct: 12 CEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYIL 71
Query: 82 GKSHECVDVNECELNLDSCANGRCVNLEGSYRCEC 116
C D++ECE N C+ G C NL G++ C C
Sbjct: 72 DDGFICTDIDECE-NGGFCS-GVCHNLPGTFECIC 104
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 41 CKFSCKNL-IGSYMCTCPPGYQQVTH----------STVAIATTDTRTAESG-------- 81
C++ C+ L SY+C C G+ + H T A D T S
Sbjct: 12 CEYQCQPLNQTSYLCVCAEGFAPIPHEPHRCQLFCNQTACPADCDPNTQASCECPEGYIL 71
Query: 82 GKSHECVDVNECELNLDSCANGRCVNLEGSYRCEC 116
C D++ECE N C+ G C NL G++ C C
Sbjct: 72 DDGFICTDIDECE-NGGFCS-GVCHNLPGTFECIC 104
>pdb|2K2S|B Chain B, Structure Of The Mic1-GldMIC6-Egf Complex From Toxoplasma
Gondii
pdb|2K2T|A Chain A, Epidermal Growth Factor-Like Domain 2 From Toxoplasma
Gondii Microneme Protein 6
Length = 61
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 101 ANGRCVNLEGSYRCECERGFKLSLDG 126
A G C Y C C +G+++SLDG
Sbjct: 23 AAGTCKETNSGYICRCNQGYRISLDG 48
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 19/80 (23%)
Query: 50 GSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGRCVNLE 109
GS+ C CP G+ S+V +D S G + C NG +
Sbjct: 21 GSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGP-----------CTPNPCHNGGTCEIS 69
Query: 110 GSYR--------CECERGFK 121
+YR C+C RGF
Sbjct: 70 EAYRGDTFIGYVCKCPRGFN 89
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 29 IDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
+D D+C + SCK+ I SY C CP G++
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFE 33
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQV 63
DV+EC + +C + IG + C C PGY+ V
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGV 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,382,118
Number of Sequences: 62578
Number of extensions: 294405
Number of successful extensions: 866
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 223
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)