RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11797
(249 letters)
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 90.0 bits (224), Expect = 1e-23
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 18/102 (17%)
Query: 30 DVDECRTPANTCK-FSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECV 88
D+DECR + C C N G + C C GY+ C+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYES-----------------GFMMMKNCM 44
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCL 130
D++EC+ + C G C N EGSYRCEC G +LS + C+
Sbjct: 45 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 38.0 bits (89), Expect = 3e-04
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 19/54 (35%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
C D+DEC+ C+ C N GSY C CPPG+Q
Sbjct: 43 CMDIDECQRDPLLCRGG-------------------VCHNTEGSYRCECPPGHQ 77
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 80.5 bits (199), Expect = 3e-19
Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 24/127 (18%)
Query: 8 CSDVDECRTPANTCKFSCKNLI----DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQV 63
C + + C+ I +C + + + C GY
Sbjct: 41 CIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAA-WGSPCTLCQVDPICGKGYS-- 97
Query: 64 THSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLS 123
K +C D++ECE+ C NG CVN GS++C+C G L
Sbjct: 98 -----------------RIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLD 140
Query: 124 LDGKQCL 130
G+ CL
Sbjct: 141 ATGRICL 147
Score = 54.7 bits (132), Expect = 9e-10
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGG------K 83
D+DEC + CKN GS++C C T+ I T ++
Sbjct: 3 DIDECESS-PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEIN 61
Query: 84 SHECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
+ ++C +L + C +G+ G QC
Sbjct: 62 INGATLKSQCCSSLGAAWG--SPCTLCQVDPICGKGYSRI-KGTQC 104
Score = 52.7 bits (127), Expect = 4e-09
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 40/149 (26%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSMPKAE 148
D++ECE + C NG C N GS+ CEC L C
Sbjct: 3 DIDECESS--PCINGVCKNSPGSFICECSSESTLDPTKTIC------------------- 41
Query: 149 NSVNNNNNQRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQLCPTRGS 208
G C++++ +GRC + A + CC ++G AWG C LC
Sbjct: 42 ------IETIKGTCWQTVIDGRCEININGA----TLKSQCCSSLGAAWGSPCTLCQ---- 87
Query: 209 QEYTDLCLESGLTVDGR---DIDECVTIP 234
+C + + G DIDEC P
Sbjct: 88 --VDPICGKGYSRIKGTQCEDIDECEVFP 114
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 79.1 bits (195), Expect = 8e-19
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 29 IDVDECRTPANTC---KFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSH 85
D++EC T + C N GSY C C PGY+ V+ +
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVS----------GAKTFKNESEN 91
Query: 86 ECVDVNECELNLDSC-ANGRCVNLEGSYRCECERGFKLSLDGKQC 129
C DV+EC C ++ C N GSY C C G+K
Sbjct: 92 TCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNN 136
Score = 58.3 bits (141), Expect = 4e-11
Identities = 23/104 (22%), Positives = 31/104 (29%), Gaps = 19/104 (18%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
D C A C + + + C C PG+ + C D
Sbjct: 1 DSRGC---ARWCP-QDSSCVNATACRCNPGFSSFSEII-------------TTPMETCDD 43
Query: 90 VNECELNLDSC--ANGRCVNLEGSYRCECERGFKLSLDGKQCLG 131
+NEC C N EGSY C C G++ K
Sbjct: 44 INECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKN 87
Score = 46.7 bits (111), Expect = 6e-07
Identities = 25/121 (20%), Positives = 33/121 (27%), Gaps = 52/121 (42%)
Query: 8 CSDVDECRTPANTC---KFSCKNLI-----------------------------DVDECR 35
C D++EC T + C N DVDEC
Sbjct: 41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECS 100
Query: 36 TPANTCKFS--CKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNEC 93
+ + C S C N +GSY C C PG++ C
Sbjct: 101 SGQHQCDSSTVCFNTVGSYSCRCRPGWK------------------PRHGIPNNQKDTVC 142
Query: 94 E 94
E
Sbjct: 143 E 143
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 78.6 bits (194), Expect = 2e-18
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 35/139 (25%)
Query: 8 CSDVDECRTPANTC------KFSCKNLI-----------DVDECRTPANTCKFSCKNLIG 50
C D + +C N I + + +
Sbjct: 41 CVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEY 100
Query: 51 SYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGRCVNLEG 110
+C G++ + D++EC+ C G+C+N G
Sbjct: 101 KILCPGGEGFR------------------PNPITVILEDIDECQELPGLCQGGKCINTFG 142
Query: 111 SYRCECERGFKLSLDGKQC 129
S++C C G+ L+ D + C
Sbjct: 143 SFQCRCPTGYYLNEDTRVC 161
Score = 70.5 bits (173), Expect = 2e-15
Identities = 24/100 (24%), Positives = 31/100 (31%), Gaps = 22/100 (22%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
DV+EC P +C N GSY+C CPP ++ CVD
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFE------------------LNPTRVGCVD 43
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
+ R G C E G +S C
Sbjct: 44 TRSGN----CYLDIRPRGDNGDTACSNEIGVGVSKASCCC 79
Score = 53.5 bits (129), Expect = 3e-09
Identities = 42/152 (27%), Positives = 59/152 (38%), Gaps = 30/152 (19%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSMPKAE 148
DVNEC +C +G CVN GSY C+C F+L+ C
Sbjct: 2 DVNECLDP-TTCISGNCVNTPGSYICDCPPDFELNPTRVGC------------------- 41
Query: 149 NSVNNNNNQRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQLCPTRGS 208
+ N + C G + ++ CCC++G AWG C++CP +
Sbjct: 42 VDTRSGNCYLDIRPRGDNGDTACSNEIGVGV----SKASCCCSLGKAWGTPCEMCPAVNT 97
Query: 209 QEYTDLCL-ESGLTVDG-----RDIDECVTIP 234
EY LC G + DIDEC +P
Sbjct: 98 SEYKILCPGGEGFRPNPITVILEDIDECQELP 129
Score = 37.3 bits (87), Expect = 0.001
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 19/60 (31%)
Query: 2 SQVTFICSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
+ +T I D+DEC+ C C N GS+ C CP GY
Sbjct: 113 NPITVILEDIDECQELPGLC-------------------QGGKCINTFGSFQCRCPTGYY 153
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 75.7 bits (187), Expect = 3e-18
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 29 IDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECV 88
+D+DEC+ P C N GSY C CP GY +ECV
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYI--------------------LAGNECV 42
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
D +EC + + C NG C N+ G + C CE GF+ C
Sbjct: 43 DTDECSVG-NPCGNGTCKNVIGGFECTCEEGFEPG-PMMTC 81
Score = 52.2 bits (126), Expect = 2e-09
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 19/73 (26%)
Query: 8 CSDVDECRTPANTCKFSCKNLI-------------------DVDECRTPANTCKFSCKNL 48
D+DEC+ P C N D DEC +CKN+
Sbjct: 2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNV 61
Query: 49 IGSYMCTCPPGYQ 61
IG + CTC G++
Sbjct: 62 IGGFECTCEEGFE 74
Score = 51.0 bits (123), Expect = 4e-09
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 87 CVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
VD++EC+ D C +G+C+N +GSYRCEC G+ L G +C
Sbjct: 2 AVDMDECKEP-DVCKHGQCINTDGSYRCECPFGY--ILAGNEC 41
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 73.9 bits (182), Expect = 3e-17
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 21/107 (19%)
Query: 23 FSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGG 82
+ + +EC C + C +L Y C CP G+Q V
Sbjct: 21 LYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR--------------- 65
Query: 83 KSHECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
C D++EC+ D+C+ CVNLEG Y+C+CE GF+L K C
Sbjct: 66 ----CEDIDECQDP-DTCS-QLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 54.6 bits (132), Expect = 4e-10
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 23/83 (27%)
Query: 45 CKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGR 104
+ + Y + NEC N C +
Sbjct: 6 HHHPMSDYDIPTTENLY----------------------FQGAMGTNECLDNNGGC-SYV 42
Query: 105 CVNLEGSYRCECERGFKLSLDGK 127
C +L+ Y C C GF+L +
Sbjct: 43 CNDLKIGYECLCPDGFQLVAQRR 65
Score = 35.4 bits (82), Expect = 0.003
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 21/54 (38%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
C D+DEC+ P +TC C NL G Y C C G+Q
Sbjct: 66 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQ 98
Score = 28.4 bits (64), Expect = 0.85
Identities = 1/21 (4%), Positives = 3/21 (14%)
Query: 102 NGRCVNLEGSYRCECERGFKL 122
+ + Y
Sbjct: 3 HHHHHHPMSDYDIPTTENLYF 23
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 71.9 bits (177), Expect = 9e-17
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 30 DVDECRTPANTCKF-SCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECV 88
DVDEC + C CKN+ G + C CP GY+ +++ C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYR---------YNLKSKS---------CE 43
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECE--RGFKLSLDGKQC 129
D++EC N+ CA CVN G Y C C+ +GFKL+ D K C
Sbjct: 44 DIDECSENM--CA-QLCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 33.0 bits (76), Expect = 0.014
Identities = 14/56 (25%), Positives = 17/56 (30%), Gaps = 24/56 (42%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTC--PPGYQ 61
C D+DEC N C C N G Y C C G++
Sbjct: 42 CEDIDECSE----------------------NMCAQLCVNYPGGYTCYCDGKKGFK 75
>1apj_A Fibrillin; microfibril, TB module, marfan syndrome, connective
tissue, novel fold, extracellular matrix; NMR {Homo
sapiens} SCOP: g.23.1.1
Length = 74
Score = 61.4 bits (149), Expect = 5e-13
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 157 QRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTM-GMAWGPQCQLCPTRGSQEYTDLC 215
R+ +CY G+C P ++ +CCC + G WG C+LCPT + + +C
Sbjct: 5 LRMSYCYAKFEGGKCSSP----KSRNHSKQECCCALKGEGWGDPCELCPTEPDEAFRQIC 60
Query: 216 LE-SGLTVDGRD 226
SG+ V D
Sbjct: 61 PYGSGIIVGPDD 72
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 57.4 bits (139), Expect = 5e-11
Identities = 28/140 (20%), Positives = 39/140 (27%), Gaps = 44/140 (31%)
Query: 10 DVDECRTPANTCKFSCKNL-------------------IDVDECRTPANTCKFSCKNLIG 50
VD C C++ C+ L + C C +
Sbjct: 3 PVDPCFR--ANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNT 59
Query: 51 SYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGRCVNLEG 110
C CP GY C D++ECE +G C NL G
Sbjct: 60 QASCECPEGYI-------------------LDDGFICTDIDECENG--GFCSGVCHNLPG 98
Query: 111 SYRCECERGFKLSL-DGKQC 129
++ C C L+ G C
Sbjct: 99 TFECICGPDSALAGQIGTDC 118
Score = 41.2 bits (97), Expect = 4e-05
Identities = 16/69 (23%), Positives = 19/69 (27%), Gaps = 16/69 (23%)
Query: 8 CSDVDECRTPANTCK----FSC-----------KNLIDVDECRTPANTCKFSCKNLIGSY 52
C C SC D+DEC C C NL G++
Sbjct: 42 CQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENG-GFCSGVCHNLPGTF 100
Query: 53 MCTCPPGYQ 61
C C P
Sbjct: 101 ECICGPDSA 109
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 55.9 bits (135), Expect = 2e-10
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 28/109 (25%)
Query: 29 IDVDECRTPANTCKFS--------CKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAES 80
+D D+C + C + IGS+ C C G++
Sbjct: 4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWE------------------- 44
Query: 81 GGKSHECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
G V C L+ C C+ G RC C G+KL D QC
Sbjct: 45 GRFCQREVSFLNCSLDNGGC-THYCLEEVGWRRCSCAPGYKLGDDLLQC 92
Score = 35.8 bits (83), Expect = 0.003
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 25 CKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
C+ + C C C +G C+C PGY+
Sbjct: 48 CQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYK 84
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 57.1 bits (137), Expect = 8e-10
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 20/106 (18%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVD 89
+ C C C+ + G+ CTC GY+ C D
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLT------------------EDGRTCQD 43
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
VNEC C+ G C N EG+++C CE G++L D + C G
Sbjct: 44 VNECAEE-GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALGPE 87
Score = 47.5 bits (112), Expect = 2e-06
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVE 137
C +N CA +C + G+ +C C G++L+ DG+ C + E
Sbjct: 2 GEENCNVNNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAE 49
Score = 29.7 bits (66), Expect = 0.86
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 105 CVNLEGSYRCECERGFKLSLDGKQC 129
C+ +Y C C GF+ + C
Sbjct: 361 CLPSGQNYTCACPTGFRKI-NSHAC 384
Score = 26.7 bits (58), Expect = 8.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 40 TCKFSCKNLIGSYMCTCPPGYQ 61
C C +Y C CP G++
Sbjct: 356 GCTHLCLPSGQNYTCACPTGFR 377
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 53.7 bits (128), Expect = 1e-08
Identities = 39/185 (21%), Positives = 65/185 (35%), Gaps = 23/185 (12%)
Query: 32 DECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVN 91
+EC C C +L Y C CP G+Q V C D++
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-------------------CEDID 41
Query: 92 ECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSMPKAENSV 151
EC+ D+C+ CVNLEG Y+C+CE GF+L K C G + ++
Sbjct: 42 ECQDP-DTCS-QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL 99
Query: 152 NNNNNQRLGFCYRSLTNGRCVLPTGPALLMEVTR--MDCCCTMGMAWGPQCQLCPTRGSQ 209
+ + L R++ + + ++++ + +R Q
Sbjct: 100 DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159
Query: 210 EYTDL 214
L
Sbjct: 160 APDGL 164
Score = 31.4 bits (70), Expect = 0.26
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 84 SHECVDVNECELNLDSCANGRCVNL----------EGSYRCECERGFKLSLDGKQCL 130
+ VN CE + +NG C L + C C G L+ D + CL
Sbjct: 343 LTQPRGVNWCERT--TLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
Score = 26.7 bits (58), Expect = 7.8
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 21/54 (38%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
C D+DEC+ P +TC C NL G Y C C G+Q
Sbjct: 37 CEDIDECQDP---------------------DTCSQLCVNLEGGYKCQCEEGFQ 69
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 50.1 bits (120), Expect = 7e-08
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 28/124 (22%)
Query: 8 CSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQQVTH 65
+V E N D D+C T + C+ CK+ +G Y CTC G++
Sbjct: 22 AREVFEDSDKTNEFWNKY---KDGDQCET--SPCQNQGKCKDGLGEYTCTCLEGFE---- 72
Query: 66 STVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLD 125
GK+ E C L+ C + C + S C C RG+ L+ +
Sbjct: 73 ----------------GKNCELFTRKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADN 115
Query: 126 GKQC 129
GK C
Sbjct: 116 GKAC 119
Score = 29.0 bits (65), Expect = 0.98
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 24/77 (31%)
Query: 45 CKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCAN-G 103
+ ++ D ++CE + C N G
Sbjct: 18 SYEEAREVFEDSDKTNE---------------------FWNKYKDGDQCETS--PCQNQG 54
Query: 104 RCVNLEGSYRCECERGF 120
+C + G Y C C GF
Sbjct: 55 KCKDGLGEYTCTCLEGF 71
Score = 28.6 bits (64), Expect = 1.5
Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 3/63 (4%)
Query: 45 CKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGR 104
+ T G + + D E+ + +D N+ + R
Sbjct: 133 ERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPF---DLLDFNQTQPERGDNNLTR 189
Query: 105 CVN 107
V
Sbjct: 190 IVG 192
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 48.8 bits (117), Expect = 9e-08
Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 48/136 (35%)
Query: 8 CSDVDECRTPANTCK--FSCKNL------------------IDVDECRTPANTCK--FSC 45
DVDEC AN C+ C N IDV+EC + N C+ +C
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATC 59
Query: 46 KNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCAN-GR 104
+ IG + C C PGY+ G E V+ +EC + C + GR
Sbjct: 60 LDQIGEFQCICMPGYE--------------------GVHCE-VNTDECASS--PCLHNGR 96
Query: 105 CVNLEGSYRCECERGF 120
C++ ++CEC GF
Sbjct: 97 CLDKINEFQCECPTGF 112
Score = 31.0 bits (71), Expect = 0.16
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 25/78 (32%)
Query: 29 IDVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHE 86
++ DEC + + C C + I + C CP G+ G +
Sbjct: 81 VNTDECAS--SPCLHNGRCLDKINEFQCECPTGFT--------------------GHLCQ 118
Query: 87 CVDVNECELNLDSCANGR 104
VD++ N R
Sbjct: 119 -VDLHHILDAQKMVWNHR 135
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 51.2 bits (122), Expect = 1e-07
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 28/121 (23%)
Query: 6 FICSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMC-TCPPGYQQVT 64
C D+DEC + C + + C N + C CPP Y+
Sbjct: 39 THCEDLDECALVPDICF---------------STSKVPRCVNTQPGFHCLPCPPRYR--- 80
Query: 65 HSTVAIATTDTRTAESGGKSHECVDVNECELNLDSC-ANGRCVNL----EGSYRCECERG 119
+ + C N C+ +C + C+ L + Y+CEC+ G
Sbjct: 81 ----GNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTG 136
Query: 120 F 120
+
Sbjct: 137 Y 137
Score = 47.7 bits (113), Expect = 2e-06
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 31/100 (31%)
Query: 30 DVDECRTPANTC--KFSCKNL-IGSYMCT-CPPGYQQVTHSTVAIATTDTRTAESGGKSH 85
D D C + N C C + GS+ C CP G+ G
Sbjct: 2 DPDGCLS--NPCFPGAQCSSFPDGSWSCGFCPVGFL--------------------GNGT 39
Query: 86 ECVDVNECELNLDSC----ANGRCVNLEGSYRCE-CERGF 120
C D++EC L D C RCVN + + C C +
Sbjct: 40 HCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRY 79
Score = 31.1 bits (70), Expect = 0.35
Identities = 14/110 (12%), Positives = 24/110 (21%), Gaps = 18/110 (16%)
Query: 7 ICSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHS 66
+C + C+ + C C + Y C C GY
Sbjct: 98 VCEPENPCKDKTHNC--------------HKHAECIYLGHFSDPMYKCECQTGYAGDGLI 143
Query: 67 TVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGRCVNLEGSYRCEC 116
D+ + C D+C + E +
Sbjct: 144 C----GEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGI 189
>1ksq_A Latent transforming growth factor beta binding protein 1;
structure, LTBP-1, TGF-beta, TB domain, latency
associated propeptide, LAP; NMR {Homo sapiens} SCOP:
g.23.1.1
Length = 75
Score = 46.5 bits (110), Expect = 2e-07
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 160 GFCYRSLT-NGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQL--CPTRGSQEYTDLC 215
CY +L C P VT+ +CCCT G WG C++ CP G+ E+T++C
Sbjct: 10 KECYYNLNDASLCDNVLAPN----VTKQECCCTSGAGWGDNCEIFPCPVLGTAEFTEMC 64
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 49.3 bits (118), Expect = 3e-07
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 21/92 (22%)
Query: 44 SCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANG 103
SC++ I Y CTC PGY+ G + E NEC
Sbjct: 18 SCQDSIWGYTCTCSPGYE--------------------GSNCEL-AKNECHPERTDGCQH 56
Query: 104 RCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C+ + SY C C +G++L D KQC+ Q
Sbjct: 57 FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 88
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 47.0 bits (112), Expect = 5e-07
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 22/101 (21%)
Query: 29 IDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECV 88
+D D+C CK+ I SY C C G++ GK+ E +
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE--------------------GKNCE-L 84
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
D N C + C C G++L+ D K C
Sbjct: 85 DATCNIKN-GRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
Score = 29.6 bits (67), Expect = 0.53
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 93 CELNLDSCA------NGRCVNLEGSYRCECERGF 120
++ D C G C + SY C C+ GF
Sbjct: 44 QYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGF 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 7e-07
Identities = 58/320 (18%), Positives = 95/320 (29%), Gaps = 115/320 (35%)
Query: 12 DECRTPANTCKFSCKNLIDV-----DECRTPAN----TCKFSCKNLIG-----SYMCTC- 56
+ RT + K + L ++ + TP + SC LIG Y+ T
Sbjct: 197 ELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCP-LIGVIQLAHYVVTAK 254
Query: 57 ----PPG-----YQQVT-HST-----VAIATTDTRTAES---------------GGKSHE 86
PG + T HS VAIA TD+ ES G + +E
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS--WESFFVSVRKAITVLFFIGVRCYE 312
Query: 87 CVDVNECELNL--DSCANGRCVNLEG--SY--------RCECE---RGFKLSLDGKQCL- 130
++ DS N EG S + + + L + +
Sbjct: 313 AYPNTSLPPSILEDSLENN-----EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 131 -----GKGQFV---------EFRIILSMPKAENSVNNNNNQRLGFCYRSLTNGRCVLP-T 175
G V + L KA + ++ + R+ F R L LP
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSNRFLPVA 424
Query: 176 GP---ALLMEVTRM---DCCCTMGMAWGPQCQL-CPTRGSQEYTDLCLESGLTVDGRDID 228
P LL+ + + D +++ + + P Y T DG D+
Sbjct: 425 SPFHSHLLVPASDLINKDLVKN-NVSFNAK-DIQIPV-----Y--------DTFDGSDLR 469
Query: 229 ECVT-IPAVESSKLAKMFLR 247
I ++ +R
Sbjct: 470 VLSGSIS----ERIVDCIIR 485
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 46.1 bits (110), Expect = 7e-07
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 25/103 (24%)
Query: 29 IDVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHE 86
D D+C T + C+ CK+ +G Y CTC G++ GK+ E
Sbjct: 40 KDGDQCET--SPCQNQGKCKDGLGEYTCTCLEGFE--------------------GKNCE 77
Query: 87 CVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
C L+ C + C + S C C RG+ L+ +GK C
Sbjct: 78 LFTRKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 33.0 bits (76), Expect = 0.027
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 24/77 (31%)
Query: 45 CKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCAN-G 103
+ ++ D ++CE + C N G
Sbjct: 18 SYEEAREVFEDSDKTNE---------------------FWNKYKDGDQCETS--PCQNQG 54
Query: 104 RCVNLEGSYRCECERGF 120
+C + G Y C C GF
Sbjct: 55 KCKDGLGEYTCTCLEGF 71
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 43.6 bits (103), Expect = 1e-06
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 88 VDVNECELNLDSCANG-------RCVNLEGSYRCECERGFKLSLDGKQC 129
VD++EC S C N G Y C C G++L D C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 41.7 bits (98), Expect = 6e-06
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 29 IDVDECRTPAN--------TCKFSCKNLIGSYMCTCPPGYQ 61
+D+DEC + + C+ C N +G Y C+C PGY+
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 46.6 bits (109), Expect = 1e-06
Identities = 27/133 (20%), Positives = 34/133 (25%), Gaps = 26/133 (19%)
Query: 25 CKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKS 84
C C + + Y C C GY + V ESG
Sbjct: 47 CXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECI 106
Query: 85 HECVD-------------------------VNECELNLDSCA-NGRCVNLEGSYRCECER 118
E + E L N C N+EG Y C+C
Sbjct: 107 VEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCME 166
Query: 119 GFKLSLDGKQCLG 131
GF + CLG
Sbjct: 167 GFTFDXEXNVCLG 179
Score = 39.6 bits (91), Expect = 3e-04
Identities = 15/110 (13%), Positives = 23/110 (20%), Gaps = 29/110 (26%)
Query: 30 DVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHEC 87
+ + +T + + C C G + C
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLV-------------------HLSENTC 41
Query: 88 VDVNECELNLDS--------CANGRCVNLEGSYRCECERGFKLSLDGKQC 129
+ NEC C Y C C G+ L D
Sbjct: 42 EEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVL 91
Score = 34.2 bits (77), Expect = 0.017
Identities = 21/152 (13%), Positives = 39/152 (25%), Gaps = 10/152 (6%)
Query: 89 DVNECELNLDS-CANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSMPKA 147
+ + +D+ C NG+ V + + C C G C + + + +
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHL-SENTCEEXNECXXETLGXACGEF 59
Query: 148 ENSVNNNNNQRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQLCPTRG 207
+ N + C G L + +D C +C +
Sbjct: 60 GQCIENP-------DPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSE 112
Query: 208 SQEYTDLCLESGLTVDGRDIDECVTIPAVESS 239
Q C G + D C
Sbjct: 113 IQSAGCSC-AIGXVPNPEDEXXCTXTGETACQ 143
Score = 32.3 bits (72), Expect = 0.088
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 18/68 (26%)
Query: 29 IDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECV 88
C+ NT C N+ G Y C C G+ + + C+
Sbjct: 137 TGETACQLXCNTDNEVCXNVEGVYXCQCMEGFT------------------FDXEXNVCL 178
Query: 89 DVNECELN 96
+ +
Sbjct: 179 GPHHHHHH 186
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 42.7 bits (101), Expect = 1e-05
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 32/108 (29%)
Query: 29 IDVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHE 86
D D+C + + C+ SCK+ + SY+C C P ++ G++ E
Sbjct: 45 SDGDQCAS--SPCQNGGSCKDQLQSYICFCLPAFE--------------------GRNCE 82
Query: 87 CVDVNECELNLDSCANG----RCVNLEGS-YRCECERGFKLSLDGKQC 129
++ + NG C + G+ C C G+ L DG C
Sbjct: 83 -THKDDQLIC--VNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 39.3 bits (92), Expect = 3e-04
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 28/87 (32%)
Query: 44 SCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANG 103
+ Y+C CP G+ G + ++NECE+ C NG
Sbjct: 72 YRGDTFIGYVCKCPRGFN--------------------GIHCQ-HNINECEVE--PCKNG 108
Query: 104 -RCVNLEGSYRCECERGFKLSLDGKQC 129
C +L +Y CEC F G+ C
Sbjct: 109 GICTDLVANYSCECPGEF----MGRNC 131
Score = 31.2 bits (71), Expect = 0.13
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 29 IDVDECRTPANTCKF--SCKNLIGSYMCTCPPGY 60
+++EC CK C +L+ +Y C CP +
Sbjct: 95 HNINECEV--EPCKNGGICTDLVANYSCECPGEF 126
Score = 29.3 bits (66), Expect = 0.60
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 21/87 (24%)
Query: 44 SCKNLI--GSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCA 101
C + GS+ C CP G+ S+ E E C N C
Sbjct: 13 ICLPGLADGSFSCECPDGFTDPNCSS---------VVEVASDEEEPTSAGPCTPN--PCH 61
Query: 102 NG--------RCVNLEGSYRCECERGF 120
NG + Y C+C RGF
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGF 88
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 39.4 bits (91), Expect = 6e-04
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 88 VDVNECELNLDSC-ANGRCVNLEGSYRCECERGFKLSLDGKQC 129
+ C N C + C + + C C + + +G+QC
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQC 43
Score = 32.0 bits (72), Expect = 0.13
Identities = 10/105 (9%), Positives = 21/105 (20%), Gaps = 25/105 (23%)
Query: 30 DVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHEC 87
C + C C++ + C C Y G +C
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYT--------------------GNGRQC 43
Query: 88 VDVNECELNLDSC---ANGRCVNLEGSYRCECERGFKLSLDGKQC 129
V + + + + + G+
Sbjct: 44 VAEGSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSY 88
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 35.4 bits (82), Expect = 0.001
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 105 CVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C RC C G+ L D K C+ +F
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 27.7 bits (62), Expect = 0.52
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 41 CKFSCKNLIGSYMCTCPPGYQ 61
C C+ C+C GY
Sbjct: 8 CDQFCREERSEVRCSCAHGYV 28
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 34.8 bits (81), Expect = 0.001
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 29 IDVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQ 61
+D D+C + N C SCK+ I SY C CP G++
Sbjct: 1 VDGDQCES--NPCLNGGSCKDDINSYECWCPFGFE 33
Score = 32.1 bits (74), Expect = 0.011
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 88 VDVNECELNLDSCAN-GRCVNLEGSYRCECERGFKLSLDGKQC 129
VD ++CE N C N G C + SY C C GF +GK C
Sbjct: 1 VDGDQCESN--PCLNGGSCKDDINSYECWCPFGF----EGKNC 37
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 34.7 bits (80), Expect = 0.002
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 105 CVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C + S C C RG+ L+ +GK C+ G +
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 27.3 bits (61), Expect = 0.78
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 41 CKFSCKNLIGSYMCTCPPGYQ 61
C C S +C+C GY
Sbjct: 11 CDQFCHEEQNSVVCSCARGYT 31
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 36.7 bits (85), Expect = 0.002
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 84 SHECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
+ D+NEC +D + C N G Y C C + L D K C
Sbjct: 111 YYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
Score = 35.9 bits (83), Expect = 0.004
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 30 DVDECRTPAN-TCKFSCKNLIGSYMCTCPPGYQ 61
D++EC + C C N IG Y C+CPP Y
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYF 148
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 37.5 bits (86), Expect = 0.003
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
VNEC C+ G C N EG+++C CE G++L D + C
Sbjct: 1 VNECAEE-GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSC 38
Score = 35.2 bits (80), Expect = 0.016
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 31 VDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
V+EC C C N G++ C C GY+
Sbjct: 1 VNECAEEG-YCSQGCTNSEGAFQCWCEAGYE 30
Score = 29.1 bits (64), Expect = 1.5
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 96 NLDSCANGRCVNL----EGSYRCECERGFKLSLDGKQC 129
N NG C +L +Y C C GF+ ++ C
Sbjct: 305 NRCGDNNGGCTHLCLPSGQNYTCACPTGFRK-INSHAC 341
Score = 27.5 bits (60), Expect = 5.0
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 39 NTCKFSCKNLIGSYMCTCPPGYQQVTHST 67
C C +Y C CP G++++
Sbjct: 312 GGCTHLCLPSGQNYTCACPTGFRKINSHA 340
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 34.0 bits (78), Expect = 0.005
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 10/54 (18%)
Query: 87 CVDVNECELNLDSCANGRC-----VNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
D C NG C + C C G+ L DG C ++
Sbjct: 2 KDDQLICVNE-----NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
Score = 25.5 bits (56), Expect = 5.0
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 27 NLIDVDECRTPANTCKFSCKNLIGS-YMCTCPPGYQ 61
+ D C C+ C + G+ C C GY
Sbjct: 1 HKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYS 36
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 35.7 bits (82), Expect = 0.005
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 72 TTDTRTAESGGKSH---ECVDVNECELNLDS--CANGRCVNLEGSYRCECERGFKLSLDG 126
+D + D++EC++ + C N G + C C G+ L +
Sbjct: 103 RSDYSNEKPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNK 162
Query: 127 KQC 129
+ C
Sbjct: 163 RTC 165
Score = 32.2 bits (73), Expect = 0.071
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 29 IDVDECRTP---ANTCKFSCKNLIGSYMCTCPPGYQ 61
D+DEC+ A TC C N +G + C+C GY
Sbjct: 122 EDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 36.7 bits (84), Expect = 0.006
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 105 CVNLEGSYRCECERGFKLSLDGKQCL 130
C+ RC C GF+L D K C+
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTCI 617
Score = 27.9 bits (61), Expect = 3.5
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 39 NTCKFSCKNLIGSYMCTCPPGYQ 61
C C C CP G++
Sbjct: 586 GGCSHLCLYRPQGLRCACPIGFE 608
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 34.7 bits (79), Expect = 0.018
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 99 SCANGRCVNL------EGSYRCECERGFKLSLDGKQC 129
NG C +L + Y+C C G KL +GK C
Sbjct: 271 GIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 307
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 34.6 bits (79), Expect = 0.019
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 84 SHECVDVNECELNLDSCANGRCVNL----------EGSYRCECERGFKLSLDGKQCL 130
+ VN CE + +NG C L + C C G L+ D + CL
Sbjct: 261 LTQPRGVNWCERT--TLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 30.9 bits (70), Expect = 0.047
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 99 SCA--NGRC-----VNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
+C NGRC + + C C G++L+ + K C F
Sbjct: 1 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 33.2 bits (75), Expect = 0.069
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 99 SCANGRCVNL-----EGSYRCECERGFKLSLDGKQCLG 131
+ NG C ++ +G+ RC C L D C G
Sbjct: 583 AQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG 620
Score = 32.9 bits (74), Expect = 0.10
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 84 SHECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEF 138
S NEC + C++ G + C C + L+ D + C F+ F
Sbjct: 259 SSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLF 313
Score = 27.5 bits (60), Expect = 4.6
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 17 PANTCKFSCKNLIDVDECRTPANTCKFSCKNL-IGSYMCTCPPGYQ 61
+ F +EC + C C + +G ++C CP Y
Sbjct: 251 VMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYS 296
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 32.4 bits (74), Expect = 0.11
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 91 NECELNLD-SCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEFRIILSMPKAE 148
NEC C + C+ + SY C C +G++L D KQC+ Q + +
Sbjct: 3 NECHPERTDGCQH-FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 60
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 29.3 bits (66), Expect = 0.14
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 105 CVNLEGSYR-CECERGFKLSLDGKQCLGKGQF 135
C + G+ R C C G+ L DG C ++
Sbjct: 13 CSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.26
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 19/43 (44%)
Query: 143 SMPKAENSVNNNNNQRLGFCYRSLTNGRCVLP-TGPALLMEVT 184
++ K + S+ +L Y + PAL ++ T
Sbjct: 21 ALKKLQASL------KL---YA---------DDSAPALAIKAT 45
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 29.4 bits (66), Expect = 0.32
Identities = 18/83 (21%), Positives = 20/83 (24%), Gaps = 31/83 (37%)
Query: 50 GSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCAN-GRCVNL 108
C C G Q V V C C N G C
Sbjct: 30 RVEYCWCNSGRAQC----------------------HSVPVKSCSEP--RCFNGGTCQQA 65
Query: 109 E--GSYRCECERGFKLSLDGKQC 129
+ C+C GF GK C
Sbjct: 66 LYFSDFVCQCPEGFA----GKSC 84
>2bue_A AAC(6')-IB; GNAT, transferase, aminoglycoside, fluoroquinolone,
acetyltransferase, antibiotic resistance; HET: COA RIO;
1.7A {Escherichia coli} PDB: 1v0c_A* 2vqy_A* 2prb_A*
2qir_A* 2pr8_A*
Length = 202
Score = 30.2 bits (68), Expect = 0.45
Identities = 22/83 (26%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 118 RGFKLSLDGKQCLGKG-------QFVEF--------RIILSMPKAENSVNNNNNQRLGFC 162
RG L LGKG VE +I P N ++ GF
Sbjct: 115 RGIDQLLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTD-PSPSNLRAIRCYEKAGFE 173
Query: 163 YRSLTNGRCVLPTGPALLMEVTR 185
G P GPA+ M TR
Sbjct: 174 R----QGTVTTPDGPAVYMVQTR 192
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism, structural
genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 28.1 bits (62), Expect = 0.55
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 89 DVNECELNLDSCANG-RCVNLEGSYRC 114
DVNEC ++C +C+N G Y C
Sbjct: 2 DVNECLTIPEACKGEMKCINHYGGYLC 28
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 30.2 bits (68), Expect = 0.61
Identities = 16/134 (11%), Positives = 36/134 (26%), Gaps = 8/134 (5%)
Query: 10 DVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVA 69
+ + + F+ + + CR P + + Y+ P + +
Sbjct: 40 ASAQAKALSKHQDFNSAVQLVENFCRNPD-----GDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 70 IATTDTRTAESGGKSHECVDVNECELNLDSCANGRCVNLEGSYRCECERGF--KLSLDGK 127
A + S ++ + N G C F K D
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFG-SGEADCGLRPLFEKKSLEDKT 153
Query: 128 QCLGKGQFVEFRII 141
+ +++ RI+
Sbjct: 154 ERELLESYIDGRIV 167
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 30.2 bits (67), Expect = 0.68
Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 25/179 (13%)
Query: 7 ICSDVDECRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHS 66
+C+ +CR ++ C +EC C C +L Y C CP G+Q
Sbjct: 292 VCNMARDCRDWSDEPIKECGT----NECLDNNGGCSHVCNDLKIGYECLCPDGFQ----- 342
Query: 67 TVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDG 126
C D++EC+ CVNLEG Y+C+CE GF+L
Sbjct: 343 --------------LVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHT 386
Query: 127 KQCLGKGQFVEFRIILSMPKAENSVNNNNNQRLGFCYRSLTNGRCVLPTGPALLMEVTR 185
K C G + +++ + L R++ + + ++++
Sbjct: 387 KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ 445
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 28.9 bits (64), Expect = 1.4
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 19/98 (19%)
Query: 51 SYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHEC-----------VDVNECELNLDS 99
+Y P G++ T S+ T + + GG S N +++ S
Sbjct: 52 TYNGEGPIGFR-GTLSSANNYTVEN---QWGGTSAPWQPGGVWVLGARDKQNIVAVSIKS 107
Query: 100 CANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVE 137
G+ + +Y E GFK + G VE
Sbjct: 108 NDGGKTLTGTTTYNGEGPIGFK----SEVTDGDTYSVE 141
Score = 28.5 bits (63), Expect = 1.8
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 51 SYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECEL-----------NLDS 99
+Y P G++ S V T + + GG + L + S
Sbjct: 119 TYNGEGPIGFK----SEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKS 174
Query: 100 CANGRCVNLEGSYRCECERGFKLSLDG 126
G+ ++ +Y E GF+ +L
Sbjct: 175 NDGGKTLSGTMTYNGEGPIGFRGTLTS 201
Score = 28.1 bits (62), Expect = 2.8
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 40 TCKFSCKNLIGS--YMCTCPPGYQ-----QVTHSTVAIATTDTRTAESGGKSHECVDVNE 92
K L G+ Y P G++ T++ T GG +
Sbjct: 173 KSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQ 232
Query: 93 CELNLDSCANGRCVNLEGS--YRCECERGFKLSL 124
+ L+ ++ L G+ Y E GF+ L
Sbjct: 233 NVVALNVASSDGGKTLAGTMIYNGEGPIGFRARL 266
Score = 27.7 bits (61), Expect = 3.7
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
N L++ S G+ + +Y E GF+ +L
Sbjct: 30 KQNVVALDIKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANN 70
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 29.2 bits (65), Expect = 1.5
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 98 DSCAN-GRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEF-----RIILSMPKAENSV 151
DSC+N G C+ + C+C S G C G F +I P +
Sbjct: 191 DSCSNQGVCLQQWDGFSCDCSMT---SFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPS 247
Query: 152 NNNNNQRLGF 161
+ +GF
Sbjct: 248 TRADRLAIGF 257
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 28.7 bits (64), Expect = 2.0
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 2/90 (2%)
Query: 19 NTCKFS-CKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQQVTHSTVAIATTDTRT 77
N C ++ + + FS ++ S C + T
Sbjct: 253 NLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAK 312
Query: 78 AESGGKSHECVDVNECELNLDSCANGRCVN 107
+ C + C+ + A C
Sbjct: 313 SH-EACQKLCTNAVRCQFFTYTPAQASCNE 341
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 28.7 bits (63), Expect = 2.1
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 85 HECVDVNECELNLDSCAN-GRCVNLEGSYRCEC 116
C E E + C N G C ++ C+C
Sbjct: 185 SPCEAGEEGEGGV--CLNGGVCSVVDDQAVCDC 215
Score = 27.1 bits (59), Expect = 6.3
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 87 CVDVNECELNLDSCAN-GRCVNLEGSYRCECERGFKLSLDGKQCLGKGQFVEF-----RI 140
C+ + SC+N G C+ + C+C G C G F +I
Sbjct: 1014 EGPSTTCQED--SCSNQGVCLQQWDGFSCDCSMTS---FSGPLCNDPGTTYIFSKGGGQI 1068
Query: 141 ILSMPKAENSVNNNNNQRLGF 161
P + + +GF
Sbjct: 1069 TYKWPPNDRPSTRADRLAIGF 1089
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 28.4 bits (63), Expect = 2.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 29 IDVDECRTPA---NTCKFSCKNLIGSYMCTCPPGYQ 61
+DVDEC+ +C C N IG Y C+C GY
Sbjct: 119 VDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154
>3oyz_A Malate synthase; TIM barrel, transferase; HET: ACO; 1.95A
{Haloferax volcanii} PDB: 3oyx_A* 3pug_A
Length = 433
Score = 27.9 bits (62), Expect = 3.3
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 107 NLEGSYRCECERGFKLSLDGKQCL 130
++EG YR + G L
Sbjct: 237 DVEG-YRERMTDNQAKGMLGIWSL 259
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 27.9 bits (62), Expect = 3.4
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 43 FSCKNLIGSYMCTCPPGYQQVTHSTV-AIATTDTRTAESGGKSHECVDVNECELNLDSCA 101
+ N+ G+ PPGY+ VT + + A+ + C+ + C+ ++
Sbjct: 3 MAVVNIFGNASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYHRCDGVTNTVT 62
Query: 102 NGRCVNLEGSYRCEC 116
+N G +
Sbjct: 63 PEEVINTTGEGIFDI 77
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 27.9 bits (62), Expect = 3.6
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 6/86 (6%)
Query: 8 CSDVDECRTPAN---TCK--FSCKNLIDVDEC-RTPANTCKFSCKNLIGSYMCTCPPGYQ 61
D+C TP C SC+ + + + + + +C G +
Sbjct: 26 ADYADDCTTPDGDQGQCMPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVR 85
Query: 62 QVTHSTVAIATTDTRTAESGGKSHEC 87
+ I + ++ +C
Sbjct: 86 HFCCPSANIQHNSKVMSLFKDENFDC 111
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 26.9 bits (60), Expect = 5.1
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 22/73 (30%)
Query: 49 IGSYMCTCPPGYQQVTHSTVAIATTDTRTAESGGKSHECVDVNECELNLDSCANGRCVNL 108
+ C C + GG+ + D+N C + G C N
Sbjct: 111 NEPWQCLCETNW--------------------GGQLCD-KDLNYCGTHQPCLNGGTCSNT 149
Query: 109 E-GSYRCECERGF 120
Y+C C G+
Sbjct: 150 GPDKYQCSCPEGY 162
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 26.7 bits (58), Expect = 7.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 114 CECERGFKLSLDGKQC 129
C+ G KLS D C
Sbjct: 6 CDGRGGLKLSQDMDTC 21
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 25.9 bits (57), Expect = 9.6
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 93 CELNLDSCAN----GRCVNLEGSYRCECERGFKLSLDGKQC 129
C + + G CV +Y C+C+ GF G +C
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGF----SGLKC 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.437
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,605,685
Number of extensions: 203134
Number of successful extensions: 949
Number of sequences better than 10.0: 1
Number of HSP's gapped: 704
Number of HSP's successfully gapped: 270
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)