RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11797
(249 letters)
>d1apja_ g.23.1.1 (A:) Fibrillin {Human (Homo sapiens) [TaxId:
9606]}
Length = 74
Score = 63.0 bits (153), Expect = 6e-14
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 157 QRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTM-GMAWGPQCQLCPTRGSQEYTDLC 215
R+ +CY G+C P ++ +CCC + G WG C+LCPT + + +C
Sbjct: 5 LRMSYCYAKFEGGKCSSP----KSRNHSKQECCCALKGEGWGDPCELCPTEPDEAFRQIC 60
Query: 216 LE-SGLTVDGRD 226
SG+ V D
Sbjct: 61 PYGSGIIVGPDD 72
>d1uzka3 g.23.1.1 (A:1529-1604) Fibrillin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 57.7 bits (139), Expect = 5e-12
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 158 RLGFCYRSLTNGRCVLPT--GPALLMEVTRMDCCCTMGMAWGPQCQLCPTRGSQEYTDLC 215
R G CY + T + + V++ CCC++G AWG C++CP + EY LC
Sbjct: 2 RSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILC 61
>d1ksqa_ g.23.1.1 (A:) Transforming growth factor-beta binding
protein-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 54.1 bits (130), Expect = 1e-10
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 160 GFCYRSLTNGR-CVLPTGPALLMEVTRMDCCCTMGMAWGPQCQL--CPTRGSQEYTDLCL 216
CY +L + C L VT+ +CCCT G WG C++ CP G+ E+T++C
Sbjct: 10 KECYYNLNDASLCDNV----LAPNVTKQECCCTSGAGWGDNCEIFPCPVLGTAEFTEMCP 65
Query: 217 E-SGLTVDG 224
+ G G
Sbjct: 66 KGKGFVPAG 74
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 52.9 bits (127), Expect = 2e-10
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCL 130
D++EC+ + C G C N EGSYRCEC G +LS + C+
Sbjct: 1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 42
Score = 37.1 bits (86), Expect = 8e-05
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 30 DVDECRTPANTCKFS-CKNLIGSYMCTCPPGYQ 61
D+DEC+ C+ C N GSY C CPPG+Q
Sbjct: 1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 33
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 52.1 bits (125), Expect = 3e-10
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
D++EC+ C G+C+N GS++C C G+ L+ D + C
Sbjct: 2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
Score = 37.1 bits (86), Expect = 8e-05
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 30 DVDECRTPANTCKFS-CKNLIGSYMCTCPPGYQ 61
D+DEC+ C+ C N GS+ C CP GY
Sbjct: 2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYY 34
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 47.5 bits (113), Expect = 1e-08
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLS-LDGKQCL 130
D++EC ++ D C G+CVN G + C+C+ G++ + K C+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM 44
Score = 37.9 bits (88), Expect = 5e-05
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 30 DVDECRTPANTCKFS-CKNLIGSYMCTCPPGYQ 61
D+DECR + C C N G + C C GY+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYE 34
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 45.3 bits (107), Expect = 1e-07
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
DVNEC +C +G CVN GSY C+C F+L+ C
Sbjct: 2 DVNECLDP-TTCISGNCVNTPGSYICDCPPDFELNPTRVGC 41
Score = 39.1 bits (91), Expect = 2e-05
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
DV+EC P +C N GSY+C CPP ++
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFE 33
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 45.3 bits (107), Expect = 1e-07
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 88 VDVNECELNLDSCANG-------RCVNLEGSYRCECERGFKLSLDGKQC 129
VD++EC S C N G Y C C G++L D C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 37.3 bits (86), Expect = 9e-05
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 29 IDVDECRTPANTCKFS--------CKNLIGSYMCTCPPGYQ 61
+D+DEC + + + + C N +G Y C+C PGY+
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 44.0 bits (104), Expect = 2e-07
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 87 CVDVNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
VD++EC+ D C +G+C+N +GSYRCEC G+ L G +C
Sbjct: 2 AVDMDECKEP-DVCKHGQCINTDGSYRCECPFGYI--LAGNEC 41
Score = 39.7 bits (93), Expect = 7e-06
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 29 IDVDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
+D+DEC+ P C N GSY C CP GY
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYI 35
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 39.9 bits (93), Expect = 7e-06
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 90 VNECELNLDSCA--NGRCVNLEGSYRCECERGFKLSLDGKQC 129
++EC++ + C N G + C C G+ L + + C
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 42
Score = 33.3 bits (76), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 31 VDECRTPANT---CKFSCKNLIGSYMCTCPPGYQ 61
+DEC+ C C N +G + C+C GY
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 34
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 39.3 bits (92), Expect = 1e-05
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
++EC+ D+C + CVNLEG Y+C+CE GF+L K C
Sbjct: 1 IDECQDP-DTC-SQLCVNLEGGYKCQCEEGFQLDPHTKAC 38
Score = 34.7 bits (80), Expect = 5e-04
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 31 VDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
+DEC+ P +TC C NL G Y C C G+Q
Sbjct: 1 IDECQDP-DTCSQLCVNLEGGYKCQCEEGFQ 30
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 39.1 bits (91), Expect = 2e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 90 VNECELNLDSCA--NGRCVNLEGSYRCECERGFKLSLDGKQC 129
V+EC +L + C N G Y C C G+ L + C
Sbjct: 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTC 42
Score = 32.2 bits (73), Expect = 0.004
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 31 VDECRTP---ANTCKFSCKNLIGSYMCTCPPGYQ 61
VDECRT + C C N +G Y C+C GY
Sbjct: 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYI 34
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 38.3 bits (89), Expect = 3e-05
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 91 NECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
NEC +D + C N G Y C C + L D K C
Sbjct: 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
Score = 31.8 bits (72), Expect = 0.005
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 32 DECRTPAN-TCKFSCKNLIGSYMCTCPPGYQ 61
+EC + C C N IG Y C+CPP Y
Sbjct: 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYF 31
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 38.2 bits (89), Expect = 3e-05
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 30 DVDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
D+DEC C C NL G++ C C P
Sbjct: 1 DIDECENG-GFCSGVCHNLPGTFECICGPDSA 31
Score = 36.3 bits (84), Expect = 1e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGFKLSL-DGKQC 129
D++ECE +G C NL G++ C C L+ G C
Sbjct: 1 DIDECENG--GFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 37.4 bits (87), Expect = 6e-05
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 89 DVNECELNLDSCAN-GRCVNLEGSYRCECERGF 120
DV+EC L + C + G+C+N GS+ C+C +G+
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGY 34
Score = 37.0 bits (86), Expect = 7e-05
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 30 DVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQ 61
DVDEC AN C+ C N +GS+ C C GY
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 35
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 36.3 bits (84), Expect = 1e-04
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 90 VNECELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQC 129
NEC N C++ C +L+ Y C C GF+L ++C
Sbjct: 2 TNECLDNNGGCSH-VCNDLKIGYECLCPDGFQLV-AQRRC 39
Score = 35.5 bits (82), Expect = 3e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 31 VDECRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
+EC C C +L Y C CP G+Q
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQ 32
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 34.8 bits (80), Expect = 6e-04
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 93 CELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C C + S C C RG+ L+ +GK C+ G +
Sbjct: 3 CSLDNGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACIPTGPY 44
Score = 29.0 bits (65), Expect = 0.069
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 34 CRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
C C C S +C+C GY
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYT 30
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 34.4 bits (79), Expect = 7e-04
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 93 CELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C + C+ G RC C G+KL D QC +F
Sbjct: 2 CSLDNGGCTH-YCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43
Score = 28.6 bits (64), Expect = 0.083
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 34 CRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
C C C +G C+C PGY+
Sbjct: 2 CSLDNGGCTHYCLEEVGWRRCSCAPGYK 29
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 34.0 bits (78), Expect = 0.001
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 93 CELNLDSCANGRCVNLEGSYRCECERGFKLSLDGKQCLGKGQF 135
C L+ C C RC C G+ L D K C+ +F
Sbjct: 1 CSLDNGGCDQ-FCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 29.0 bits (65), Expect = 0.068
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 34 CRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
C C C+ C+C GY
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYV 28
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 31.9 bits (73), Expect = 0.004
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 29 IDVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQ 61
+D D+C + N C SCK+ I SY C CP G++
Sbjct: 1 VDGDQCES--NPCLNGGSCKDDINSYECWCPFGFE 33
Score = 31.6 bits (72), Expect = 0.005
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 88 VDVNECELNLDSCAN-GRCVNLEGSYRCECERGF 120
VD ++CE N C N G C + SY C C GF
Sbjct: 1 VDGDQCESN--PCLNGGSCKDDINSYECWCPFGF 32
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 31.7 bits (72), Expect = 0.005
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 93 CELNLDSC-ANGRCVNLEGSYRCECERGFKLSLDGKQCL 130
C N C + C + + C C + + +G+QC+
Sbjct: 2 CANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCV 38
Score = 25.6 bits (56), Expect = 0.98
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 44 SCKNLIGSYMCTCPPGYQ 61
C++ + C C Y
Sbjct: 14 ECRDYATGFCCRCVANYT 31
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 30.4 bits (69), Expect = 0.016
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 89 DVNECELNLDSCANG-RCVNLEGSYRCECERGF 120
D ++C + C NG C + SY C C F
Sbjct: 1 DGDQCASS--PCQNGGSCKDQLQSYICFCLPAF 31
Score = 29.7 bits (67), Expect = 0.028
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 30 DVDECRTPANTCKF--SCKNLIGSYMCTCPPGYQ 61
D D+C + + C+ SCK+ + SY+C C P ++
Sbjct: 1 DGDQCAS--SPCQNGGSCKDQLQSYICFCLPAFE 32
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 30.3 bits (68), Expect = 0.021
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 91 NECELNLDSC-----ANGRCVNLEGSYRCECERGFKLSLDGKQCL 130
L+ C + + C C G L+ D + CL
Sbjct: 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49
Score = 23.7 bits (51), Expect = 5.5
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 6/36 (16%)
Query: 32 DECRTPANTCKFSC------KNLIGSYMCTCPPGYQ 61
+ C++ C + C CP G
Sbjct: 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 40
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 29.4 bits (66), Expect = 0.048
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 105 CVNLEG-SYRCECERGFKLSLDGKQCLGKGQF 135
C N C C G++L+ + K C F
Sbjct: 14 CKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 45
Score = 23.2 bits (50), Expect = 7.8
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 34 CRTPANTCKFSCKNLIG-SYMCTCPPGYQ 61
C C+ CKN +C+C GY+
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYR 31
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 29.0 bits (65), Expect = 0.066
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 89 DVNECELNLDSCANGRCVNLEGSYRCECERGF 120
+ C C +G C++ GS+ C+C G+
Sbjct: 7 LEHPCASL--CCGHGTCIDGIGSFSCDCRSGW 36
Score = 24.4 bits (53), Expect = 2.7
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 25 CKNLIDVDECRTPANTCKF-SCKNLIGSYMCTCPPGY 60
C L C + C +C + IGS+ C C G+
Sbjct: 2 CLVLPLEHPCAS--LCCGHGTCIDGIGSFSCDCRSGW 36
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.5 bits (64), Expect = 0.071
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 90 VNECELNLDSCANG-RCVNLEGSYRCECERGF 120
VNEC N C N C++ G ++C C G+
Sbjct: 1 VNECVSN--PCQNDATCLDQIGEFQCICMPGY 30
Score = 28.1 bits (63), Expect = 0.12
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 31 VDECRTPANTCKF--SCKNLIGSYMCTCPPGYQ 61
V+EC + N C+ +C + IG + C C PGY+
Sbjct: 1 VNECVS--NPCQNDATCLDQIGEFQCICMPGYE 31
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 28.3 bits (63), Expect = 0.081
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 91 NECELNLDSCANGRCVNLEGSYRCECERGFK 121
+EC + + C NG C N+ G + C CE GF+
Sbjct: 2 DECSVG-NPCGNGTCKNVIGGFECTCEEGFE 31
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.2 bits (63), Expect = 0.12
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 105 CVNLEG-SYRCECERGFKLSLDGKQCLGKGQF 135
C + G C C G+ L DG C ++
Sbjct: 13 CSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
Score = 23.2 bits (50), Expect = 9.3
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 34 CRTPANTCKFSCKNLIG-SYMCTCPPGYQ 61
C C+ C + G C C GY
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYS 30
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.23
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 44 SCKNLIGSYMCTCPPGYQ 61
CK+ +G Y CTC G++
Sbjct: 13 KCKDGLGEYTCTCLEGFE 30
Score = 27.0 bits (60), Expect = 0.24
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 91 NECELNLDSCAN-GRCVNLEGSYRCECERGF 120
++CE + C N G+C + G Y C C GF
Sbjct: 1 DQCETS--PCQNQGKCKDGLGEYTCTCLEGF 29
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.9 bits (60), Expect = 0.26
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 91 NECELNLDSCAN-GRCVNLEGSYRCECERGF 120
+EC + C + GRC++ ++CEC GF
Sbjct: 1 DECASS--PCLHNGRCLDKINEFQCECPTGF 29
Score = 26.9 bits (60), Expect = 0.27
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 44 SCKNLIGSYMCTCPPGYQ 61
C + I + C CP G+
Sbjct: 13 RCLDKINEFQCECPTGFT 30
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 28.6 bits (63), Expect = 0.50
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 114 CECERGFKLSLDGKQCLGKGQFVEFRI 140
C+ G KLS D C V F +
Sbjct: 2 CDGRGGLKLSQDMDTCEDILPCVPFSV 28
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 26.9 bits (59), Expect = 0.52
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 84 SHECVDVNECE----LNLDSCANGRCVNLEGSYRCECERGF 120
SH V E E +N C + ++ Y C+C+ GF
Sbjct: 1 SH-LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGF 40
Score = 23.8 bits (51), Expect = 6.7
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 28 LIDVDE-----CRTPANTCKFSCKNLIGSYMCTCPPGYQ 61
L+ E C + Y+C C PG+
Sbjct: 3 LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFT 41
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 25.1 bits (55), Expect = 1.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 44 SCKNLIGSYMCTCPPGYQ 61
C I +Y C C PG+
Sbjct: 14 ECVETINNYTCKCDPGFS 31
Score = 24.7 bits (54), Expect = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 102 NGRCVNLEGSYRCECERGF 120
+G CV +Y C+C+ GF
Sbjct: 12 HGECVETINNYTCKCDPGF 30
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 24.8 bits (54), Expect = 1.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 44 SCKNLIGSYMCTCPPGYQ 61
C IG+Y C+C PG+
Sbjct: 14 ECLETIGNYTCSCYPGFY 31
Score = 24.8 bits (54), Expect = 1.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 102 NGRCVNLEGSYRCECERGF 120
G C+ G+Y C C GF
Sbjct: 12 QGECLETIGNYTCSCYPGF 30
>d1onca_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Frog (Rana
pipiens), P-30 [TaxId: 8404]}
Length = 104
Score = 25.6 bits (56), Expect = 2.8
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 14 CRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGY 60
C+ + + + +C + CK+ K + TC
Sbjct: 48 CKGIIASKNVLTTSEFYLSDCNVTSRPCKYKLKKSTNKFCVTCENQA 94
>d1oj8a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
(Rana catesbeiana), RNase6 [TaxId: 8400]}
Length = 105
Score = 25.2 bits (55), Expect = 4.1
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 5 TFICSDVDE----CRTPANTCKFSCKNLIDVDECRTPANTCKFSCKNLIGSYMCTCPPGY 60
TFI + C+ N +++ + +C C + + TC
Sbjct: 35 TFIFARPPRVQALCKNIKNNTNVLSRDVFYLPQCNRKKLPCHYRLDGSTNTICLTCMKEL 94
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo
sapiens) [TaxId: 9606]}
Length = 173
Score = 25.6 bits (56), Expect = 5.4
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 139 RIILSMPKAENSVNNNNNQRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGP 198
R IL+ + G+C R + +LP G + + + C P
Sbjct: 80 RYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYC-------P 132
Query: 199 QCQ 201
+C
Sbjct: 133 KCM 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.437
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 916,830
Number of extensions: 43732
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 125
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)