BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11798
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 60 DINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCY------DSYQ 113
D+NEC + C G C+N G C+CP F L+P + C+D R CY
Sbjct: 2 DVNECLDPT-TCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 114 EGTCTLLRKQPITVKECCCSMGQAWGRYCLPCPSPNSGE 152
+ C+ ++ CCCS+G+AWG C CP+ N+ E
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSE 99
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41 FRCICPYGYALAPDGRHCI--DINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGM 98
++ +CP G P+ I DI+EC+E G+C+ GKCIN G C CP G+ L+ +
Sbjct: 100 YKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTR 159
Query: 99 KC 100
C
Sbjct: 160 VC 161
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 18 EDINECLELSNQC-AFRCHNVPGSFRCICPYGYALAPDGRHC 58
EDI+EC EL C +C N GSF+C CP GY L D R C
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 60 DINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCY------DSYQ 113
D+NEC + C G C+N G C+CP F L+P + C+D R CY
Sbjct: 2 DVNECLDPT-TCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 114 EGTCTLLRKQPITVKECCCSMGQAWGRYCLPCPSPNSGE 152
+ C+ ++ CCCS+G+AWG C CP+ N+ E
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSE 99
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41 FRCICPYGYALAPDGRHCI--DINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGM 98
++ +CP G P+ I DI+EC+E G+C+ GKCIN G C CP G+ L+ +
Sbjct: 100 YKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTR 159
Query: 99 KC 100
C
Sbjct: 160 VC 161
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 18 EDINECLELSNQC-AFRCHNVPGSFRCICPYGYALAPDGRHC 58
EDI+EC EL C +C N GSF+C CP GY L D R C
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 57
Query: 81 GGVTCECPEGFMLSPNGMKC 100
GG C+C EGF L P+ C
Sbjct: 58 GGYKCQCEEGFQLDPHTKAC 77
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 97
Query: 81 GGVTCECPEGFMLSPNGMKC 100
GG C+C EGF L P+ C
Sbjct: 98 GGYKCQCEEGFQLDPHTKAC 117
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 369
Query: 81 GGVTCECPEGFMLSPNGMKCIDV 103
GG C+C EGF L P+ C V
Sbjct: 370 GGYKCQCEEGFQLDPHTKACKAV 392
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 30 CAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIAGGVTCECPE 89
CA +C + G+ +C C GY L DGR C D+NEC E EG C G C N G C C
Sbjct: 13 CAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAE-EGYCSQG-CTNSEGAFQCWCEA 70
Query: 90 GFMLSPNGMKC 100
G+ L P+ C
Sbjct: 71 GYELRPDRRSC 81
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 8 TGYRLRVE--TCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 58
TGYRL + TC+D+NEC E C+ C N G+F+C C GY L PD R C
Sbjct: 30 TGYRLTEDGRTCQDVNECAE-EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSC 81
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 64 CKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQ 105
C N G C KC I G V C C G+ L+ +G C DV +
Sbjct: 6 CNVNNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNE 46
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C++ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 86
Query: 81 GGVTCECPEGFMLSPNGMKC 100
GG C+C EGF L P+ C
Sbjct: 87 GGYKCQCEEGFQLDPHTKAC 106
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 351
Query: 81 GGVTCECPEGFMLSPNGMKCIDV 103
GG C+C EGF L P+ C V
Sbjct: 352 GGYKCQCEEGFQLDPHTKACKAV 374
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C++ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 62
Query: 81 GGVTCECPEGFMLSPNGMKC 100
GG C+C EGF L P+ C
Sbjct: 63 GGYKCQCEEGFQLDPHTKAC 82
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 86
Query: 81 GGVTCECPEGFMLSPNGMKC 100
GG C+C EGF L P+ C
Sbjct: 87 GGYKCQCEEGFQLDPHTKAC 106
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 19 DINECLELSNQCAF-RCHNVPGSFRCICPYGYALA-PDGRHCIDINECKENEGICEDGKC 76
DI+EC + C +C N PG F C C GY ++C+DI+EC+ + +C G C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 77 INIAGGVTCECPEGFMLSPNGMKCI 101
N G CECP G LSPN CI
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISACI 86
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 59
Query: 81 GGVTCECPEGFMLSPNGMKCIDV 103
GG C+C EGF L P+ C V
Sbjct: 60 GGYKCQCEEGFQLDPHTKACKAV 82
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 59
Query: 81 GGVTCECPEGFMLSPNGMKC 100
GG C+C EGF L P+ C
Sbjct: 60 GGYKCQCEEGFQLDPHTKAC 79
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ + + C+N+
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQ--LCVNLE 62
Query: 81 GGVTCECPEGFMLSPNGMKC 100
GG C+C EGF L P+ C
Sbjct: 63 GGYKCQCEEGFQLDPHTKAC 82
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 19 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCIN 78
D++EC E +C N GS+RC CP+GY LA G C+D +EC C +G C N
Sbjct: 4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSVGN-PCGNGTCKN 60
Query: 79 IAGGVTCECPEGFMLSP 95
+ GG C C EGF P
Sbjct: 61 VIGGFECTCEEGFEPGP 77
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 59 IDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCT 118
+D++ECKE + +C+ G+CIN G CECP G++L+ G +C+D + + GTC
Sbjct: 3 VDMDECKEPD-VCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSVGNPCGNGTC- 58
Query: 119 LLRKQPITVKECCCSMG 135
K I EC C G
Sbjct: 59 ---KNVIGGFECTCEEG 72
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 18 EDINECLELSNQCAFR-CHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKC 76
+D++EC + C C N+PG F C CP GY + C DI+EC EN +C C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSEN--MCAQ-LC 57
Query: 77 INIAGGVTCEC--PEGFMLSPNGMKC 100
+N GG TC C +GF L+ + C
Sbjct: 58 VNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 10 YRLRVETCEDINECLELSNQCAFRCHNVPGSFRCIC--PYGYALAPDGRHC 58
Y L+ ++CEDI+EC E N CA C N PG + C C G+ LA D + C
Sbjct: 35 YNLKSKSCEDIDECSE--NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 60 DINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQ 105
D++EC IC C NI G CECPEG+ + C D+ +
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDE 47
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 60 DINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTL 119
DI+EC+ + C +G C N G CEC L P CI+ + C+ + +G C +
Sbjct: 3 DIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 120 LRKQPITVKECCCSMGQAWGRYCLPC 145
+CC S+G AWG C C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLC 86
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 44 ICPYGYALAPDGRHCIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCI 101
IC GY+ G C DI+EC+ G+C++G C+N G C+CP G L G C+
Sbjct: 91 ICGKGYSRI-KGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 9 GY-RLRVETCEDINECLELSNQCAFR-CHNVPGSFRCICPYGYALAPDGRHCI 59
GY R++ CEDI+EC C C N GSF+C CP G L GR C+
Sbjct: 95 GYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 14 VETCEDINECLELSNQCAFR---CHNVPGSFRCICPYGYALAPDGR--------HCIDIN 62
+ETC+DINEC LS + C N GS+ C+C GY + C D++
Sbjct: 38 METCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVD 97
Query: 63 ECKENEGICEDGK-CINIAGGVTCECPEGFMLS---PNGMK 99
EC + C+ C N G +C C G+ PN K
Sbjct: 98 ECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQK 138
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 8 TGYRLRVETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECKE 66
TG R + D+NEC+ Q C + G F+CIC GY +G HC ++ +EC
Sbjct: 37 TGPRCEI----DVNECVSNPCQNDATCLDQIGEFQCICMPGY----EGVHCEVNTDECAS 88
Query: 67 NEGICEDGKCINIAGGVTCECPEGF 91
+ + +G+C++ CECP GF
Sbjct: 89 SPCL-HNGRCLDKINEFQCECPTGF 112
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 18 EDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENEGICE-D 73
+D++EC +N C A +C N GSF C C GY G C ID+NEC N C+ D
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNP--CQND 56
Query: 74 GKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDS 111
C++ G C C G+ G+ C +V D C S
Sbjct: 57 ATCLDQIGEFQCICMPGY----EGVHC-EVNTDECASS 89
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 60 DINECKENEGICED-GKCINIAGGVTCECPEGFMLSPNGMKC-IDVRQDVCYDSYQEGTC 117
D++EC CE GKCIN G C+C +G+ G +C IDV + V + TC
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNPCQNDATC 59
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 8 TGYRLRVETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECKE 66
TG R + D+NEC+ Q C + G F+CIC GY +G HC ++ +EC
Sbjct: 35 TGPRCEI----DVNECVSNPCQNDATCLDQIGEFQCICMPGY----EGVHCEVNTDECAS 86
Query: 67 NEGICEDGKCINIAGGVTCECPEGF 91
+ + +G+C++ CECP GF
Sbjct: 87 SPCL-HNGRCLDKINEFQCECPTGF 110
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 18 EDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENEGICEDG 74
+D++EC +N C A +C N GSF C C GY G C ID+NEC N D
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNPCQ-NDA 55
Query: 75 KCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDS 111
C++ G C C G+ G+ C +V D C S
Sbjct: 56 TCLDQIGEFQCICMPGY----EGVHC-EVNTDECASS 87
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 60 DINECKENEGICED-GKCINIAGGVTCECPEGFMLSPNGMKC-IDVRQDVCYDSYQEGTC 117
D++EC CE GKCIN G C+C +G+ G +C IDV + V + TC
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNPCQNDATC 57
>pdb|1APJ|A Chain A, Nmr Study Of The Transforming Growth Factor Beta Binding
Protein-Like Domain (Tb Module8-Cys Domain), Nmr, 21
Structures
Length = 74
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 102 DVRQDVCYDSYQEGTCTLLRKQPITVKECCCSM-GQAWGRYCLPCPS 147
D+R CY ++ G C+ + + + +ECCC++ G+ WG C CP+
Sbjct: 4 DLRMSYCYAKFEGGKCSSPKSRNHSKQECCCALKGEGWGDPCELCPT 50
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 19 DINECLELSNQ---CAFRCHNVPGSFRCICPYGYALAPDGRHC 58
D++EC E ++ C CHN G + C C +GY L D R C
Sbjct: 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 58 CIDINECKE--NEGICEDGKCINIAGGVTCECPEGFMLSPNGMKC 100
+D++ECKE +E + D C N GG C C G++L + C
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 19 DINECLELSNQ---CAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKEN 67
D++EC E ++ C CHN G + C C +GY L D R C EC +N
Sbjct: 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC--RVECSDN 169
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 58 CIDINECKE--NEGICEDGKCINIAGGVTCECPEGFMLSPNGMKC 100
+D++ECKE +E + D C N GG C C G++L + C
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 20 INECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 58
+NEC E C+ C N G+F+C C GY L PD R C
Sbjct: 1 VNECAE-EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSC 38
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 16/65 (24%)
Query: 61 INECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKC--------------IDVRQD 106
+NEC E EG C G C N G C C G+ L P+ C ID+RQ
Sbjct: 1 VNECAE-EGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 107 VCYDS 111
+ + S
Sbjct: 59 LPHRS 63
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 17 CEDINECLELSNQCAFRCHNVPGSFRCICPYGYALA 52
C DI+EC E C+ CHN+PG+F CIC ALA
Sbjct: 77 CTDIDEC-ENGGFCSGVCHNLPGTFECICGPDSALA 111
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 17 CEDINECLELSNQCAFRCHNVPGSFRCICPYGYALA 52
C DI+EC E C+ CHN+PG+F CIC ALA
Sbjct: 77 CTDIDEC-ENGGFCSGVCHNLPGTFECICGPDSALA 111
>pdb|1VF5|C Chain C, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|P Chain P, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|C Chain C, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|P Chain P, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2E74|C Chain C, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|C Chain C, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|C Chain C, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|C Chain C, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|C Chain C, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 289
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 70 ICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQ---DVCYDSYQEGTCTLLRKQPIT 126
+ DG + + G PEGF ++P ++++ DV + Y+EG +L P+
Sbjct: 61 VAADGSKVGLNVGAVLMLPEGFKIAPEERIPEELKKEVGDVYFQPYKEGQDNVLLVGPLP 120
Query: 127 VKECCCSMGQAWGRYCLPCPSPN 149
G+ + P SPN
Sbjct: 121 --------GEQYQEIVFPVLSPN 135
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 21 NECLELSNQCAFRCHNVP-GSFRCICPYGYALAPDGRHC 58
NEC + C+ C VP G F C CP Y+L D R C
Sbjct: 266 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 21 NECLELSNQCAFRCHNVP-GSFRCICPYGYALAPDGRHC 58
NEC + C+ C VP G F C CP Y+L D R C
Sbjct: 271 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 309
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 21 NECLELSNQCAFRCHNVP-GSFRCICPYGYALAPDGRHC 58
NEC + C+ C VP G F C CP Y+L D R C
Sbjct: 264 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 302
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
N C E + C+ C P RC CP G+ L D + CI
Sbjct: 571 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 609
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
N C E + C+ C P RC CP G+ L D + CI
Sbjct: 579 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 19 DINECLELSN-QCAFRCHNVPGSFRCICPYGYALAPDGRHC 58
DINEC + + C+ C+N G + C CP Y L D ++C
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>pdb|1KSQ|A Chain A, Nmr Study Of The Third Tb Domain From Latent Transforming
Growth Factor-Beta Binding Protein-1
Length = 75
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 104 RQDVCYDSYQEGTCTLLRKQPITVKECCCSMGQAWGRYC--LPCPSPNSGEPATFWSHYP 161
+++ Y+ C + +T +ECCC+ G WG C PCP + E F P
Sbjct: 9 KKECYYNLNDASLCDNVLAPNVTKQECCCTSGAGWGDNCEIFPCPVLGTAE---FTEMCP 65
Query: 162 KG 163
KG
Sbjct: 66 KG 67
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 16 TCEDINECLELSNQ---CAFRCHNVPGSFRCICPYGYALAPDGRHC 58
EDI+EC + C CHN G F C C GY L + R C
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 60 DINECKENEGICE--DGKCINIAGGVTCECPEGFMLSPNGMKC 100
DI+EC+ G D C N GG C C G++L N C
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 18 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINE--CKENEGICEDGK 75
+D ++C Q +C + G + C C G+ +G++C C + G C D
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDC-DQF 94
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMG 135
C V C C G+ L+ NG CI C G TL R++ +V + S G
Sbjct: 95 CHEEQNSVVCSCARGYTLADNGKACIPTGPYPC------GKQTLERRK-RSVAQATSSSG 147
Query: 136 QA 137
+A
Sbjct: 148 EA 149
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGR 56
NECL+ + C+ C+++ + C+CP G+ L R
Sbjct: 46 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 81
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 19 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINE--CKENEGICEDGKC 76
D ++C Q +C + G + C C G+ +G++C C + G C D C
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDC-DQFC 55
Query: 77 INIAGGVTCECPEGFMLSPNGMKCI 101
V C C G+ L+ NG CI
Sbjct: 56 HEEQNSVVCSCARGYTLADNGKACI 80
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 18 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC--IDINECKENEGICEDGK 75
+D ++C Q +C + G + C C G+ +G++C C + G C D
Sbjct: 45 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDC-DQF 99
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCI 101
C V C C G+ L+ NG CI
Sbjct: 100 CHEEQNSVVCSCARGYTLADNGKACI 125
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 19 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINE--CKENEGICEDGKC 76
D ++C Q +C + G + C C G+ +G++C C + G C D C
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDC-DQFC 95
Query: 77 INIAGGVTCECPEGFMLSPNGMKCI 101
V C C G+ L+ NG CI
Sbjct: 96 HEEQNSVVCSCARGYTLADNGKACI 120
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 18 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC--IDINECKENEGICEDGK 75
+D ++C Q +C + G + C C G+ +G++C C + G C D
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDC-DQF 56
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCI 101
C V C C G+ L+ NG CI
Sbjct: 57 CHEEQASVVCSCARGYTLADNGKACI 82
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 19 DINECLELSN--------QCAFRCHNVPGSFRCICPYGYALAPDGRHC 58
D++EC S QC CHN G + C C GY L D C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 18 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC--IDINECKENEGICEDGK 75
+D ++C Q +C + G + C C G+ +G++C C + G C D
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDC-DQF 56
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCI 101
C V C C G+ L+ NG CI
Sbjct: 57 CHEEQNSVVCSCARGYTLADNGKACI 82
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 18 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC--IDINECKENEGICEDGK 75
+D ++C Q +C + G + C C G+ +G++C C + G C D
Sbjct: 1 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDC-DQF 55
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCI 101
C V C C G+ L+ NG CI
Sbjct: 56 CHEEQNSVVCSCARGYTLADNGKACI 81
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 14/58 (24%)
Query: 40 SFRCICPYGYALAPDGRHCI-DINECK----ENEGICEDGKCINIAGGVTCECPEGFM 92
+ C CP G+ +G HC +INEC+ +N GIC D + +CECP FM
Sbjct: 79 GYVCKCPRGF----NGIHCQHNINECEVEPCKNGGICTD-----LVANYSCECPGEFM 127
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 19 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINE--CKENEGICEDGKC 76
D ++C Q +C + G + C C G+ +G++C C + G C D C
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDC-DQFC 55
Query: 77 INIAGGVTCECPEGFMLSPNGMKCI 101
V C C G+ L+ NG CI
Sbjct: 56 HEEQNSVVCSCARGYTLADNGKACI 80
>pdb|1DQB|A Chain A, Nmr Structure Of Thrombomodulin Egf(4-5)
Length = 83
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 18 EDINECLELSNQCAFRCHNV-PGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKC 76
E ++ C + C ++C + S+ C+C G+A P H + C C
Sbjct: 3 EPVDPCFRAN--CEYQCQPLNQTSYLCVCAEGFAPIPHEPH--------RCQMFCNQTAC 52
Query: 77 ---INIAGGVTCECPEGFMLSPNGMKCIDVRQ 105
+ +CECPEG++L +G C D+ +
Sbjct: 53 PADCDPNTQASCECPEGYILD-DGFICTDIDE 83
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 18 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC--IDINECKENEGICEDGK 75
+D ++C Q +C G + C C G+ +G++C C + G C D
Sbjct: 1 KDGDQCETSPCQNQGKCKXGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDC-DQF 55
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCI 101
C V C C G+ L+ NG CI
Sbjct: 56 CHEEQNSVVCSCARGYTLADNGKACI 81
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 26 LSNQC--AFRCHNVP-GSFRC-ICPYGYALAPDGRHCIDINECKENEGIC----EDGKCI 77
LSN C +C + P GS+ C CP G+ +G HC D++EC IC + +C+
Sbjct: 4 LSNPCFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDECALVPDICFSTSKVPRCV 61
Query: 78 NIAGGVTC-ECP 88
N G C CP
Sbjct: 62 NTQPGFHCLPCP 73
>pdb|2D1J|B Chain B, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2P3F|L Chain L, Crystal Structure Of The Factor XaNAP5 COMPLEX
pdb|2EI6|B Chain B, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|B Chain B, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|B Chain B, Factor Xa In Complex With The Inhibitor
(1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,
N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|B Chain B, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|B Chain B, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|B Chain B, Factor Xa In Complex With D102-4380
pdb|3TK6|B Chain B, Factor Xa In Complex With D46-5241
Length = 54
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
+ C CH S C C GY LA +G+ CI
Sbjct: 9 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 41
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 21 NECL-ELSNQCAFRCHNVPG--SFRCICPYGYALAPDGRHCIDINEC 64
NEC E ++ C C +PG S+ C C GY L D + C+ ++C
Sbjct: 3 NECHPERTDGCQHFC--LPGQESYTCSCAQGYRLGEDHKQCVPHDQC 47
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 21 NECL-ELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 64
NEC E ++ C C S+ C C GY L D + C+ ++C
Sbjct: 44 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 88
>pdb|1FJS|L Chain L, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1V3X|B Chain B, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|2FZZ|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|L Chain L, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|L Chain L, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2P16|L Chain L, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,
4- C]pyridine-3-Carboxamide
pdb|2P3U|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|3CEN|L Chain L, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|L Chain L, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,
4-C]pyridin- 7(4h)-One
pdb|3FFG|L Chain L, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,
4-C]pyridin- 7(4h)-One
pdb|3KQB|L Chain L, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|L Chain L, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon
Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|L Chain L, Factor Xa In Complex With The Inhibitor
3-Methyl-1-(3-(5- Ox
Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3M36|L Chain L, Factor Xa In Complex With The Inhibitor
1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-
3- (Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|L Chain L, Factor Xa In Complex With The Inhibitor
1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
pdb|1Z6E|L Chain L, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
Length = 52
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
+ C CH S C C GY LA +G+ CI
Sbjct: 7 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 39
>pdb|2GD4|L Chain L, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|A Chain A, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 58
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 34 CHNVPGSFRCICPYGYALAPDGRHCI 59
CH S C C GY LA +G+ CI
Sbjct: 16 CHEEQNSVVCSCARGYTLADNGKACI 41
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 26 LSNQC--AFRCHNVP-GSFRC-ICPYGYALAPDGRHCIDINECKENEGIC----EDGKCI 77
LSN C +C + P GS+ C CP G+ +G HC D++EC IC + +C+
Sbjct: 7 LSNPCFPGAQCSSFPDGSWSCGFCPVGFLG--NGTHCEDLDECALVPDICFSTSKVPRCV 64
Query: 78 NIAGGVTC-ECP 88
N G C CP
Sbjct: 65 NTQPGFHCLPCP 76
>pdb|2BMG|A Chain A, Crystal Structure Of Factor Xa In Complex With 50
Length = 53
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
+ C CH S C C GY LA +G+ CI
Sbjct: 8 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 40
>pdb|2PR3|B Chain B, Factor Xa Inhibitor
pdb|2Q1J|B Chain B, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2PHB|B Chain B, An Orally Efficacious Factor Xa Inhibitor
pdb|2W3I|B Chain B, Crystal Structure Of Fxa In Complex With
4,4-disubstituted Pyrrolidine-1,2-dicarboxamide
Inhibitor 2
pdb|2W3K|B Chain B, Crystal Structure Of Fxa In Complex With
4,4-Disubstituted Pyrrolidine-1,2-Dicarboxamide
Inhibitor 1
pdb|3LIW|B Chain B, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
Length = 51
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
+ C CH S C C GY LA +G+ CI
Sbjct: 6 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 38
>pdb|2Y5F|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|L Chain L, Factor Xa - Cation Inhibitor Complex
Length = 54
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
+ C CH S C C GY LA +G+ CI
Sbjct: 7 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 39
>pdb|2RA0|L Chain L, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
Length = 51
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
+ C CH S C C GY LA +G+ CI
Sbjct: 6 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 38
>pdb|1MQ5|L Chain L, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|L Chain L, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|2W26|B Chain B, Factor Xa In Complex With Bay59-7939
Length = 51
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
+ C CH S C C GY LA +G+ CI
Sbjct: 7 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 39
>pdb|1MA9|A Chain A, Crystal Structure Of The Complex Of Human Vitamin D
Binding Protein And Rabbit Muscle Actin
Length = 458
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 74 GKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQ 123
G+C ++ TC +G +L ID Q++C D Y E T T +K+
Sbjct: 357 GECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCAD-YSENTFTEYKKK 405
>pdb|1J78|A Chain A, Crystallographic Analysis Of The Human Vitamin D Binding
Protein
pdb|1J78|B Chain B, Crystallographic Analysis Of The Human Vitamin D Binding
Protein
pdb|1J7E|A Chain A, A Structural Basis For The Unique Binding Features Of The
Human Vitamin D-Binding Protein
pdb|1J7E|B Chain B, A Structural Basis For The Unique Binding Features Of The
Human Vitamin D-Binding Protein
pdb|1LOT|A Chain A, Crystal Structure Of The Complex Of Actin With Vitamin
D-Binding Protein
Length = 458
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 74 GKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQ 123
G+C ++ TC +G +L ID Q++C D Y E T T +K+
Sbjct: 357 GECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCAD-YSENTFTEYKKK 405
>pdb|1KW2|A Chain A, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
pdb|1KW2|B Chain B, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
pdb|1KXP|D Chain D, Crystal Structure Of Human Vitamin D-binding Protein In
Complex With Skeletal Actin
Length = 458
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 74 GKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQ 123
G+C ++ TC +G +L ID Q++C D Y E T T +K+
Sbjct: 357 GECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCAD-YSENTFTEYKKK 405
>pdb|2BOK|L Chain L, Factor Xa- Cation
pdb|2JKH|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|L Chain L, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBW|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 55
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 34 CHNVPGSFRCICPYGYALAPDGRHCI 59
CH S C C GY LA +G+ CI
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACI 40
>pdb|2BQ6|A Chain A, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|A Chain A, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
45
Length = 52
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
+ C CH S C C GY LA +G+ CI
Sbjct: 8 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 40
>pdb|3KL6|B Chain B, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
Length = 57
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 34 CHNVPGSFRCICPYGYALAPDGRHCI 59
CH S C C GY LA +G+ CI
Sbjct: 18 CHEEQNSVVCSCARGYTLADNGKACI 43
>pdb|1HCG|B Chain B, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
Length = 51
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
+ C CH S C C GY LA +G+ CI
Sbjct: 5 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,068,845
Number of Sequences: 62578
Number of extensions: 288111
Number of successful extensions: 668
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 218
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)