Query psy11798
Match_columns 245
No_of_seqs 261 out of 1834
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 19:16:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 99.6 2.2E-15 4.7E-20 138.7 12.0 134 2-143 716-864 (1289)
2 KOG1219|consensus 99.4 1.3E-12 2.8E-17 129.8 7.7 112 17-143 3860-3977(4289)
3 KOG4289|consensus 99.2 3E-11 6.6E-16 116.7 8.9 80 3-90 1223-1308(2531)
4 KOG1219|consensus 99.2 3.8E-11 8.2E-16 119.8 6.4 87 2-100 3886-3976(4289)
5 KOG1214|consensus 99.1 3.9E-10 8.4E-15 104.7 8.1 108 31-142 705-824 (1289)
6 PF07645 EGF_CA: Calcium-bindi 98.8 9.3E-09 2E-13 62.1 4.0 40 19-58 1-42 (42)
7 KOG4289|consensus 98.8 1.1E-08 2.4E-13 99.5 6.1 96 35-144 1216-1317(2531)
8 KOG4260|consensus 98.5 8.3E-08 1.8E-12 79.1 3.7 119 2-137 168-304 (350)
9 PF12662 cEGF: Complement Clr- 98.5 6.8E-08 1.5E-12 50.3 1.9 24 40-63 1-24 (24)
10 KOG1217|consensus 98.5 1.3E-06 2.7E-11 79.3 11.1 132 2-142 152-306 (487)
11 PF07645 EGF_CA: Calcium-bindi 98.5 2E-07 4.3E-12 56.2 3.7 40 60-99 1-41 (42)
12 PF14670 FXa_inhibition: Coagu 98.4 2.6E-07 5.7E-12 53.4 3.0 35 24-58 2-36 (36)
13 KOG4260|consensus 98.4 2E-07 4.4E-12 76.8 2.5 79 5-91 221-303 (350)
14 KOG1217|consensus 98.4 3.9E-06 8.4E-11 76.1 11.0 106 32-143 243-353 (487)
15 PF14670 FXa_inhibition: Coagu 97.9 9.8E-06 2.1E-10 46.8 2.7 34 66-100 3-36 (36)
16 PF12662 cEGF: Complement Clr- 97.9 7.2E-06 1.6E-10 42.7 1.8 24 82-105 1-24 (24)
17 KOG1225|consensus 97.9 7.5E-05 1.6E-09 68.4 9.6 128 3-165 235-365 (525)
18 smart00179 EGF_CA Calcium-bind 97.8 2.8E-05 6.1E-10 45.5 3.4 37 19-58 1-38 (39)
19 PF06247 Plasmod_Pvs28: Plasmo 97.7 4.9E-05 1.1E-09 59.8 4.8 124 3-137 21-160 (197)
20 KOG1225|consensus 97.5 0.00029 6.2E-09 64.6 6.8 100 2-141 265-365 (525)
21 cd00054 EGF_CA Calcium-binding 97.5 0.00015 3.2E-09 41.8 3.3 36 19-58 1-37 (38)
22 PF00008 EGF: EGF-like domain 97.5 8.2E-05 1.8E-09 41.9 2.0 28 23-50 1-29 (32)
23 KOG0994|consensus 97.4 0.0013 2.7E-08 64.3 9.6 97 44-148 845-953 (1758)
24 PF12947 EGF_3: EGF domain; I 97.2 0.0003 6.4E-09 40.7 2.3 27 25-51 3-31 (36)
25 smart00179 EGF_CA Calcium-bind 96.8 0.0016 3.5E-08 37.8 3.0 32 60-92 1-33 (39)
26 KOG1226|consensus 96.7 0.0093 2E-07 56.4 8.6 130 2-149 478-626 (783)
27 PF12947 EGF_3: EGF domain; I 96.4 0.0019 4.1E-08 37.3 1.6 28 66-93 3-31 (36)
28 cd00053 EGF Epidermal growth f 96.4 0.005 1.1E-07 34.6 3.2 24 27-50 7-30 (36)
29 smart00181 EGF Epidermal growt 96.3 0.0049 1.1E-07 34.9 3.1 18 33-50 12-29 (35)
30 cd01475 vWA_Matrilin VWA_Matri 96.1 0.0049 1.1E-07 50.9 3.1 43 55-98 181-223 (224)
31 PF00683 TB: TB domain; Inter 96.0 9.9E-05 2.2E-09 44.2 -5.5 30 125-154 11-40 (42)
32 PF12661 hEGF: Human growth fa 95.8 0.0036 7.7E-08 27.6 0.6 13 3-17 1-13 (13)
33 cd00054 EGF_CA Calcium-binding 95.8 0.012 2.5E-07 33.6 2.9 30 61-91 2-32 (38)
34 PF06247 Plasmod_Pvs28: Plasmo 95.5 0.014 3E-07 46.2 3.2 99 29-137 7-119 (197)
35 PF00008 EGF: EGF-like domain 95.5 0.0078 1.7E-07 33.7 1.3 23 70-92 5-29 (32)
36 KOG0994|consensus 94.8 0.074 1.6E-06 52.7 6.4 17 128-145 1084-1100(1758)
37 KOG1226|consensus 93.8 0.23 5E-06 47.3 7.3 84 2-101 525-620 (783)
38 smart00181 EGF Epidermal growt 93.7 0.096 2.1E-06 29.4 3.1 23 70-92 7-29 (35)
39 cd00053 EGF Epidermal growth f 93.5 0.11 2.5E-06 28.7 3.2 24 69-92 6-30 (36)
40 cd01475 vWA_Matrilin VWA_Matri 88.3 0.42 9.1E-06 39.3 2.8 39 96-138 180-218 (224)
41 PF12946 EGF_MSP1_1: MSP1 EGF 86.6 0.82 1.8E-05 26.3 2.5 26 27-52 6-32 (37)
42 PF07974 EGF_2: EGF-like domai 85.7 1.2 2.6E-05 24.8 2.9 23 30-58 10-32 (32)
43 KOG1836|consensus 85.4 1.2 2.7E-05 46.9 4.8 22 125-147 794-816 (1705)
44 KOG1836|consensus 79.7 6.2 0.00013 41.9 7.3 52 41-101 756-812 (1705)
45 PHA03099 epidermal growth fact 79.5 1.9 4.2E-05 32.0 2.7 39 20-62 42-84 (139)
46 PF09064 Tme5_EGF_like: Thromb 78.4 1.3 2.8E-05 24.9 1.2 11 2-12 18-28 (34)
47 PHA02887 EGF-like protein; Pro 76.2 2.3 5E-05 31.1 2.2 37 20-60 83-123 (126)
48 smart00180 EGF_Lam Laminin-typ 65.2 6.4 0.00014 23.7 2.2 20 128-148 18-37 (46)
49 cd00055 EGF_Lam Laminin-type e 63.5 6.8 0.00015 23.9 2.1 20 128-148 19-38 (50)
50 PHA03099 epidermal growth fact 62.6 6.7 0.00015 29.2 2.2 40 61-104 42-84 (139)
51 PF00053 Laminin_EGF: Laminin 58.9 5.7 0.00012 24.1 1.2 21 127-148 17-37 (49)
52 KOG1218|consensus 58.7 48 0.001 28.2 7.4 19 124-143 158-176 (316)
53 KOG1215|consensus 57.0 16 0.00034 36.5 4.5 76 19-97 324-400 (877)
54 PF01683 EB: EB module; Inter 56.6 31 0.00067 21.0 4.3 18 31-52 31-48 (52)
55 PHA02887 EGF-like protein; Pro 56.3 10 0.00022 27.8 2.3 21 123-144 103-123 (126)
56 KOG3514|consensus 50.4 10 0.00022 38.2 1.9 34 22-59 625-659 (1591)
57 KOG3516|consensus 49.7 13 0.00028 37.8 2.5 41 15-59 540-581 (1306)
58 PF01826 TIL: Trypsin Inhibito 49.3 16 0.00034 22.7 2.1 22 42-64 34-55 (55)
59 smart00051 DSL delta serrate l 49.1 21 0.00046 23.1 2.7 39 5-50 20-59 (63)
60 KOG1215|consensus 45.7 33 0.00072 34.2 4.8 52 2-55 346-400 (877)
61 PF00954 S_locus_glycop: S-loc 30.2 47 0.001 23.8 2.3 30 61-92 77-107 (110)
62 PF12955 DUF3844: Domain of un 29.9 35 0.00076 24.6 1.5 30 21-50 6-42 (103)
63 KOG0196|consensus 26.6 1.1E+02 0.0024 30.4 4.6 53 84-136 260-316 (996)
64 PF11874 DUF3394: Domain of un 25.7 20 0.00042 28.7 -0.4 19 226-244 165-183 (183)
65 KOG3514|consensus 22.8 65 0.0014 32.9 2.4 30 113-143 627-659 (1591)
66 KOG3516|consensus 21.1 80 0.0017 32.5 2.6 35 21-59 956-991 (1306)
67 KOG0196|consensus 20.2 94 0.002 30.9 2.8 49 42-91 260-316 (996)
No 1
>KOG1214|consensus
Probab=99.63 E-value=2.2e-15 Score=138.66 Aligned_cols=134 Identities=31% Similarity=0.701 Sum_probs=114.1
Q ss_pred CccccCCCCeeCCCccccccccCCCCCCC--CCeeeeCCCCceEeCCCCceeCCCCCeeEe------ccccccCCCCCC-
Q psy11798 2 STTMSVTGYRLRVETCEDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHCID------INECKENEGICE- 72 (245)
Q Consensus 2 ~~C~C~~G~~~~g~~C~dideC~~~p~~c--~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~~------~~eC~~~~~~C~- 72 (245)
.+|.|..||.++|++|.|++||++.+..| +..|+|.+++|+|.|..||....++.+|+. ++.|+...+.|.
T Consensus 716 ~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i 795 (1289)
T KOG1214|consen 716 YTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAI 795 (1289)
T ss_pred eEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCc
Confidence 48999999999999999999999988888 689999999999999999999999999974 356776656675
Q ss_pred C--CeEeecC-CcceecCCCCceeCCCCCceeecCcccccCCCcccCccCCc--cCCCCCceEecCCCc-cCCCCCc
Q psy11798 73 D--GKCINIA-GGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLR--KQPITVKECCCSMGQ-AWGRYCL 143 (245)
Q Consensus 73 ~--~~C~~~~-g~~~C~C~~g~~l~~~g~~C~~~~~~~C~~~~~~~~C~~~~--~~~~~~~~C~C~~G~-~~G~~C~ 143 (245)
. ..|+... +.|.|.|.+|| ..+|..|.++++ | ....|+..+ .|..+++.|.|.+|| ++|.+|-
T Consensus 796 ~g~a~c~~hGgs~y~C~CLPGf--sGDG~~c~dvDe--C----~psrChp~A~CyntpgsfsC~C~pGy~GDGf~CV 864 (1289)
T KOG1214|consen 796 AGQARCVHHGGSTYSCACLPGF--SGDGHQCTDVDE--C----SPSRCHPAATCYNTPGSFSCRCQPGYYGDGFQCV 864 (1289)
T ss_pred CCceEEEecCCceEEEeecCCc--cCCccccccccc--c----CccccCCCceEecCCCcceeecccCccCCCceec
Confidence 3 3666654 47999999999 457889989988 9 567898887 899999999999998 6677774
No 2
>KOG1219|consensus
Probab=99.36 E-value=1.3e-12 Score=129.79 Aligned_cols=112 Identities=31% Similarity=0.773 Sum_probs=96.8
Q ss_pred cc-cccccCCCCCCCCCeeeeCC-CCceEeCCCCceeCCCCCeeE-eccccccCCCCCC-CCeEeecCCcceecCCCCce
Q psy11798 17 CE-DINECLELSNQCAFRCHNVP-GSFRCICPYGYALAPDGRHCI-DINECKENEGICE-DGKCINIAGGVTCECPEGFM 92 (245)
Q Consensus 17 C~-dideC~~~p~~c~~~C~n~~-gsy~C~C~~Gy~~~~~g~~C~-~~~eC~~~~~~C~-~~~C~~~~g~~~C~C~~g~~ 92 (245)
|. -.+.|..+||+.+|+|...+ ++|.|.|++.|. |++|+ ++..|..+| |. +|+|+...+.|.|.|+.||
T Consensus 3860 C~l~~d~C~~npCqhgG~C~~~~~ggy~CkCpsqys----G~~CEi~~epC~snP--C~~GgtCip~~n~f~CnC~~gy- 3932 (4289)
T KOG1219|consen 3860 CSLLTDPCNDNPCQHGGTCISQPKGGYKCKCPSQYS----GNHCEIDLEPCASNP--CLTGGTCIPFYNGFLCNCPNGY- 3932 (4289)
T ss_pred ccccccccccCcccCCCEecCCCCCceEEeCccccc----CcccccccccccCCC--CCCCCEEEecCCCeeEeCCCCc-
Confidence 54 23889999999999999887 689999999999 99997 889999888 98 6799999999999999999
Q ss_pred eCCCCCceeecCcccccCCCcccCccCCc--cCCCCCceEecCCCccCCCCCc
Q psy11798 93 LSPNGMKCIDVRQDVCYDSYQEGTCTLLR--KQPITVKECCCSMGQAWGRYCL 143 (245)
Q Consensus 93 l~~~g~~C~~~~~~~C~~~~~~~~C~~~~--~~~~~~~~C~C~~G~~~G~~C~ 143 (245)
+|..|+.....+| ..+.|.+++ .|..|+|.|.|.+|+. |..|.
T Consensus 3933 ---TG~~Ce~~Gi~eC----s~n~C~~gg~C~n~~gsf~CncT~g~~-gr~c~ 3977 (4289)
T KOG1219|consen 3933 ---TGKRCEARGISEC----SKNVCGTGGQCINIPGSFHCNCTPGIL-GRTCC 3977 (4289)
T ss_pred ---cCceeeccccccc----ccccccCCceeeccCCceEeccChhHh-cccCc
Confidence 8999964333348 678898887 8999999999999998 87773
No 3
>KOG4289|consensus
Probab=99.23 E-value=3e-11 Score=116.67 Aligned_cols=80 Identities=33% Similarity=0.866 Sum_probs=69.3
Q ss_pred ccccCCCCeeCCCccc-cccccCCCCCCCCCeeeeCCCCceEeCCCCceeCCCCCeeE-ec--cccccCCCCCC-CCeEe
Q psy11798 3 TTMSVTGYRLRVETCE-DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI-DI--NECKENEGICE-DGKCI 77 (245)
Q Consensus 3 ~C~C~~G~~~~g~~C~-dideC~~~p~~c~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-~~--~eC~~~~~~C~-~~~C~ 77 (245)
.|.|+|||+ |..|+ +||+|-++||.++++|+...|+|+|.|.+||+ |++|+ +. ..|. |+.|. .++|+
T Consensus 1223 rCrCPpGFT--gd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~t----GehCEvs~~agrCv--pGvC~nggtC~ 1294 (2531)
T KOG4289|consen 1223 RCRCPPGFT--GDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFT----GEHCEVSARAGRCV--PGVCKNGGTCV 1294 (2531)
T ss_pred eEeCCCCCC--cccccchhHhhhcCCCCCCCceEEecCceeEEecCCcc----ccceeeecccCccc--cceecCCCEEe
Confidence 499999999 88999 99999999998899999999999999999999 99997 33 2354 57798 56999
Q ss_pred ecC-CcceecCCCC
Q psy11798 78 NIA-GGVTCECPEG 90 (245)
Q Consensus 78 ~~~-g~~~C~C~~g 90 (245)
+.. |.|.|.|+.|
T Consensus 1295 ~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1295 NLLNGGFCCHCPYG 1308 (2531)
T ss_pred ecCCCceeccCCCc
Confidence 874 6789999877
No 4
>KOG1219|consensus
Probab=99.16 E-value=3.8e-11 Score=119.79 Aligned_cols=87 Identities=34% Similarity=0.804 Sum_probs=79.2
Q ss_pred CccccCCCCeeCCCccc-cccccCCCCCCCCCeeeeCCCCceEeCCCCceeCCCCCeeE-e-ccccccCCCCCC-CCeEe
Q psy11798 2 STTMSVTGYRLRVETCE-DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI-D-INECKENEGICE-DGKCI 77 (245)
Q Consensus 2 ~~C~C~~G~~~~g~~C~-dideC~~~p~~c~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-~-~~eC~~~~~~C~-~~~C~ 77 (245)
+.|.|++-|. |++|| +++.|.++||..+++|....++|.|.|+.||+ |.+|+ + ++||+.++ |+ .|.|+
T Consensus 3886 y~CkCpsqys--G~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyT----G~~Ce~~Gi~eCs~n~--C~~gg~C~ 3957 (4289)
T KOG1219|consen 3886 YKCKCPSQYS--GNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYT----GKRCEARGISECSKNV--CGTGGQCI 3957 (4289)
T ss_pred eEEeCccccc--CcccccccccccCCCCCCCCEEEecCCCeeEeCCCCcc----Cceeeccccccccccc--ccCCceee
Confidence 4699999999 99999 99999999988899999999999999999999 99998 4 89999766 99 56999
Q ss_pred ecCCcceecCCCCceeCCCCCce
Q psy11798 78 NIAGGVTCECPEGFMLSPNGMKC 100 (245)
Q Consensus 78 ~~~g~~~C~C~~g~~l~~~g~~C 100 (245)
|..|+|.|.|.+|| -|+.|
T Consensus 3958 n~~gsf~CncT~g~----~gr~c 3976 (4289)
T KOG1219|consen 3958 NIPGSFHCNCTPGI----LGRTC 3976 (4289)
T ss_pred ccCCceEeccChhH----hcccC
Confidence 99999999999999 45555
No 5
>KOG1214|consensus
Probab=99.07 E-value=3.9e-10 Score=104.66 Aligned_cols=108 Identities=31% Similarity=0.751 Sum_probs=82.6
Q ss_pred CCeeeeCC-CCceEeCCCCceeCCCCCeeEeccccccCCCCCC-CCeEeecCCcceecCCCCceeCCCCCceeecCc---
Q psy11798 31 AFRCHNVP-GSFRCICPYGYALAPDGRHCIDINECKENEGICE-DGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQ--- 105 (245)
Q Consensus 31 ~~~C~n~~-gsy~C~C~~Gy~~~~~g~~C~~~~eC~~~~~~C~-~~~C~~~~g~~~C~C~~g~~l~~~g~~C~~~~~--- 105 (245)
...|.... -.|+|.|..||. .+++.|.|++||+..++.|+ +..|++..++|+|.|..+|.+..++..|..+..
T Consensus 705 ~a~C~pg~~~~~tcecs~g~~--gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap 782 (1289)
T KOG1214|consen 705 TARCHPGTGVDYTCECSSGYQ--GDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAP 782 (1289)
T ss_pred CccccCCCCcceEEEEeeccC--CCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCC
Confidence 45566554 379999999998 45889999999998888899 789999999999999999999999999965422
Q ss_pred -ccccCCCcccCccCCc-----cCCCCCceEecCCCc-cCCCCC
Q psy11798 106 -DVCYDSYQEGTCTLLR-----KQPITVKECCCSMGQ-AWGRYC 142 (245)
Q Consensus 106 -~~C~~~~~~~~C~~~~-----~~~~~~~~C~C~~G~-~~G~~C 142 (245)
..|.. +.+.|.... ....+.|.|.|.+|| ++|..|
T Consensus 783 ~n~Ce~--g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c 824 (1289)
T KOG1214|consen 783 ANPCED--GSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQC 824 (1289)
T ss_pred CCcccc--CccccCcCCceEEEecCCceEEEeecCCccCCcccc
Confidence 23643 345565444 234556999999999 445544
No 6
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.77 E-value=9.3e-09 Score=62.06 Aligned_cols=40 Identities=48% Similarity=1.032 Sum_probs=34.6
Q ss_pred cccccCCCCCCC--CCeeeeCCCCceEeCCCCceeCCCCCee
Q psy11798 19 DINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHC 58 (245)
Q Consensus 19 dideC~~~p~~c--~~~C~n~~gsy~C~C~~Gy~~~~~g~~C 58 (245)
|||||...+..| .+.|+|+.|+|.|.|++||....++..|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 799999887777 6999999999999999999977666554
No 7
>KOG4289|consensus
Probab=98.76 E-value=1.1e-08 Score=99.48 Aligned_cols=96 Identities=31% Similarity=0.696 Sum_probs=78.6
Q ss_pred eeCCCCceEeCCCCceeCCCCCeeE-eccccccCCCCCC-CCeEeecCCcceecCCCCceeCCCCCcee-ecCcccccCC
Q psy11798 35 HNVPGSFRCICPYGYALAPDGRHCI-DINECKENEGICE-DGKCINIAGGVTCECPEGFMLSPNGMKCI-DVRQDVCYDS 111 (245)
Q Consensus 35 ~n~~gsy~C~C~~Gy~~~~~g~~C~-~~~eC~~~~~~C~-~~~C~~~~g~~~C~C~~g~~l~~~g~~C~-~~~~~~C~~~ 111 (245)
++..++++|.||+||+ |..|+ ++|+|-..| |. +++|....|.|.|.|.+|| .|..|+ +.....|
T Consensus 1216 i~pvnglrCrCPpGFT----gd~CeTeiDlCYs~p--C~nng~C~srEggYtCeCrpg~----tGehCEvs~~agrC--- 1282 (2531)
T KOG4289|consen 1216 IHPVNGLRCRCPPGFT----GDYCETEIDLCYSGP--CGNNGRCRSREGGYTCECRPGF----TGEHCEVSARAGRC--- 1282 (2531)
T ss_pred ccccCceeEeCCCCCC----cccccchhHhhhcCC--CCCCCceEEecCceeEEecCCc----cccceeeecccCcc---
Confidence 3456789999999999 88897 899998877 98 7899999999999999999 799994 4445557
Q ss_pred CcccCccCCc---cCCCCCceEecCCCccCCCCCcc
Q psy11798 112 YQEGTCTLLR---KQPITVKECCCSMGQAWGRYCLP 144 (245)
Q Consensus 112 ~~~~~C~~~~---~~~~~~~~C~C~~G~~~G~~C~~ 144 (245)
.++.|.+++ ....+.+.|.|+.|.-.+..|+.
T Consensus 1283 -vpGvC~nggtC~~~~nggf~c~Cp~ge~e~prC~v 1317 (2531)
T KOG4289|consen 1283 -VPGVCKNGGTCVNLLNGGFCCHCPYGEFEDPRCEV 1317 (2531)
T ss_pred -ccceecCCCEEeecCCCceeccCCCcccCCCceEE
Confidence 567788777 34567799999999654788874
No 8
>KOG4260|consensus
Probab=98.51 E-value=8.3e-08 Score=79.08 Aligned_cols=119 Identities=29% Similarity=0.580 Sum_probs=76.4
Q ss_pred CccccCCCCeeCCCcccc--c-------cc----cCCCCCCCCCeeeeCCCCceE-eCCCCceeCCCCCeeEeccccccC
Q psy11798 2 STTMSVTGYRLRVETCED--I-------NE----CLELSNQCAFRCHNVPGSFRC-ICPYGYALAPDGRHCIDINECKEN 67 (245)
Q Consensus 2 ~~C~C~~G~~~~g~~C~d--i-------de----C~~~p~~c~~~C~n~~gsy~C-~C~~Gy~~~~~g~~C~~~~eC~~~ 67 (245)
..|.|.+||. |..|.+ + |+ |..=.-.|.++|.. .++-.| .|..||.+... .|+|||||...
T Consensus 168 GkCkC~~GY~--Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg-~~~k~C~kCkkGW~lde~--gCvDvnEC~~e 242 (350)
T KOG4260|consen 168 GKCKCETGYT--GPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSG-ESSKGCSKCKKGWKLDEE--GCVDVNECQNE 242 (350)
T ss_pred CcccccCCCC--CccccccchHHHHhhcccccchhhhhhhhhhcccCC-CCCCChhhhcccceeccc--ccccHHHHhcC
Confidence 4799999999 766631 1 11 11000113334432 344556 79999998744 49999999987
Q ss_pred CCCCC-CCeEeecCCcceecCCCCceeCCCCCceeecCcccccCCCcccCccC---CccCCCCCceEecCCCcc
Q psy11798 68 EGICE-DGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTL---LRKQPITVKECCCSMGQA 137 (245)
Q Consensus 68 ~~~C~-~~~C~~~~g~~~C~C~~g~~l~~~g~~C~~~~~~~C~~~~~~~~C~~---~~~~~~~~~~C~C~~G~~ 137 (245)
+..|. +..|+|+.|+|.|.+.+||.. ++++ |.. ....|.. ...|..+.|+|.|..|+-
T Consensus 243 p~~c~~~qfCvNteGSf~C~dk~Gy~~--------g~d~--C~~--~~d~~~~kn~~c~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 243 PAPCKAHQFCVNTEGSFKCEDKEGYKK--------GVDE--CQF--CADVCASKNRPCMNIDGQYRCVCFSGLI 304 (350)
T ss_pred CCCCChhheeecCCCceEecccccccC--------ChHH--hhh--hhhhcccCCCCcccCCccEEEEecccce
Confidence 77788 569999999999999999942 1222 311 1122221 115678889999988763
No 9
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=98.50 E-value=6.8e-08 Score=50.34 Aligned_cols=24 Identities=63% Similarity=1.370 Sum_probs=22.8
Q ss_pred CceEeCCCCceeCCCCCeeEeccc
Q psy11798 40 SFRCICPYGYALAPDGRHCIDINE 63 (245)
Q Consensus 40 sy~C~C~~Gy~~~~~g~~C~~~~e 63 (245)
||+|.|++||.+.++++.|+||||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 699999999999999999999987
No 10
>KOG1217|consensus
Probab=98.48 E-value=1.3e-06 Score=79.30 Aligned_cols=132 Identities=34% Similarity=0.747 Sum_probs=89.0
Q ss_pred CccccCCCCeeCCCccc-cccccCCCCCCC--CCeeeeCCCCceEeCCCCceeCCCCC-----eeEe-----------cc
Q psy11798 2 STTMSVTGYRLRVETCE-DINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGR-----HCID-----------IN 62 (245)
Q Consensus 2 ~~C~C~~G~~~~g~~C~-dideC~~~p~~c--~~~C~n~~gsy~C~C~~Gy~~~~~g~-----~C~~-----------~~ 62 (245)
..|.|.+||. +..|. +.++|...+..| ++.|.+..++|.|.|++||....... .|.+ .+
T Consensus 152 ~~c~C~~g~~--~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~ 229 (487)
T KOG1217|consen 152 FRCSCTEGYE--GEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGP 229 (487)
T ss_pred eeeeeCCCcc--cccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCC
Confidence 4689999999 77777 447898555434 78999999999999999998443221 1321 12
Q ss_pred ccccCCCCCC-C-CeEeecCCcceecCCCCceeCCCCCceeecCcccccCCCcccCccCCc--cCCCCCceEecCCCccC
Q psy11798 63 ECKENEGICE-D-GKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLR--KQPITVKECCCSMGQAW 138 (245)
Q Consensus 63 eC~~~~~~C~-~-~~C~~~~g~~~C~C~~g~~l~~~g~~C~~~~~~~C~~~~~~~~C~~~~--~~~~~~~~C~C~~G~~~ 138 (245)
.|......+. . +.|.+..++|.|.|++||..... ..+.++++ |.. ... |.+.. .+..+.|.|.|++||.
T Consensus 230 ~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~-~~~~~~~~--C~~--~~~-c~~~~~C~~~~~~~~C~C~~g~~- 302 (487)
T KOG1217|consen 230 ECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDAC-VTCVDVDS--CAL--IAS-CPNGGTCVNVPGSYRCTCPPGFT- 302 (487)
T ss_pred CcccccccccCCCCcccccCCceeeeCCCCcccccc-ceeeeccc--cCC--CCc-cCCCCeeecCCCcceeeCCCCCC-
Confidence 3332222232 1 68899999999999999954321 34556666 732 222 66544 6666669999999998
Q ss_pred CCCC
Q psy11798 139 GRYC 142 (245)
Q Consensus 139 G~~C 142 (245)
|..|
T Consensus 303 g~~~ 306 (487)
T KOG1217|consen 303 GRLC 306 (487)
T ss_pred CCCC
Confidence 7766
No 11
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.47 E-value=2e-07 Score=56.18 Aligned_cols=40 Identities=40% Similarity=1.020 Sum_probs=33.8
Q ss_pred eccccccCCCCCC-CCeEeecCCcceecCCCCceeCCCCCc
Q psy11798 60 DINECKENEGICE-DGKCINIAGGVTCECPEGFMLSPNGMK 99 (245)
Q Consensus 60 ~~~eC~~~~~~C~-~~~C~~~~g~~~C~C~~g~~l~~~g~~ 99 (245)
|||||...++.|. ++.|+|+.|+|.|.|++||.....+..
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~ 41 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTT 41 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCc
Confidence 6899998778898 679999999999999999975555444
No 12
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.41 E-value=2.6e-07 Score=53.39 Aligned_cols=35 Identities=51% Similarity=1.101 Sum_probs=28.7
Q ss_pred CCCCCCCCCeeeeCCCCceEeCCCCceeCCCCCee
Q psy11798 24 LELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 58 (245)
Q Consensus 24 ~~~p~~c~~~C~n~~gsy~C~C~~Gy~~~~~g~~C 58 (245)
..+...|.+.|++.+++|+|.|++||.|.+|+++|
T Consensus 2 ~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 2 SVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp TTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 34456789999999999999999999999999876
No 13
>KOG4260|consensus
Probab=98.36 E-value=2e-07 Score=76.83 Aligned_cols=79 Identities=34% Similarity=0.765 Sum_probs=64.2
Q ss_pred ccCCCCeeCCCccccccccCCCCCCC--CCeeeeCCCCceEeCCCCceeCCCCCeeEeccccccCCCCCC--CCeEeecC
Q psy11798 5 MSVTGYRLRVETCEDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICE--DGKCINIA 80 (245)
Q Consensus 5 ~C~~G~~~~g~~C~dideC~~~p~~c--~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~~~~eC~~~~~~C~--~~~C~~~~ 80 (245)
.|..||.++-.-|.|||||...|..| +..|+|+.|||.|.+++||.. ++|+|..-..+|. +..|.|+.
T Consensus 221 kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~--------g~d~C~~~~d~~~~kn~~c~ni~ 292 (350)
T KOG4260|consen 221 KCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK--------GVDECQFCADVCASKNRPCMNID 292 (350)
T ss_pred hhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC--------ChHHhhhhhhhcccCCCCcccCC
Confidence 48889999877899999999877777 788999999999999999972 3566654222343 45899999
Q ss_pred CcceecCCCCc
Q psy11798 81 GGVTCECPEGF 91 (245)
Q Consensus 81 g~~~C~C~~g~ 91 (245)
+.|+|+|..++
T Consensus 293 ~~~r~v~f~~~ 303 (350)
T KOG4260|consen 293 GQYRCVCFSGL 303 (350)
T ss_pred ccEEEEecccc
Confidence 99999998887
No 14
>KOG1217|consensus
Probab=98.35 E-value=3.9e-06 Score=76.12 Aligned_cols=106 Identities=32% Similarity=0.746 Sum_probs=75.4
Q ss_pred CeeeeCCCCceEeCCCCceeCCCCCeeEeccccccCCCCCC-CCeEeecCCcceecCCCCceeCCCCCceeecCcccccC
Q psy11798 32 FRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICE-DGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYD 110 (245)
Q Consensus 32 ~~C~n~~gsy~C~C~~Gy~~~~~g~~C~~~~eC~~~~~~C~-~~~C~~~~g~~~C~C~~g~~l~~~g~~C~~~~~~~C~~ 110 (245)
++|++..++|.|.|++||.+... ..|.++++|..... |. ++.|++..+.|.|.|++||..... ..+.+..+ |..
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~~~~-~~~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~C~~g~~g~~~-~~~~~~~~--C~~ 317 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTGDAC-VTCVDVDSCALIAS-CPNGGTCVNVPGSYRCTCPPGFTGRLC-TECVDVDE--CSP 317 (487)
T ss_pred CcccccCCceeeeCCCCcccccc-ceeeeccccCCCCc-cCCCCeeecCCCcceeeCCCCCCCCCC-cccccccc--ccc
Confidence 78999999999999999995431 35789999987654 77 579999999999999999943222 12223333 643
Q ss_pred CCcccCccCCc----cCCCCCceEecCCCccCCCCCc
Q psy11798 111 SYQEGTCTLLR----KQPITVKECCCSMGQAWGRYCL 143 (245)
Q Consensus 111 ~~~~~~C~~~~----~~~~~~~~C~C~~G~~~G~~C~ 143 (245)
......|.++. ....+.+.|.|..|+. |..|+
T Consensus 318 ~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~-g~~C~ 353 (487)
T KOG1217|consen 318 RNAGGPCANGGTCNTLGSFGGFRCACGPGFT-GRRCE 353 (487)
T ss_pred cccCCcCCCCcccccCCCCCCCCcCCCCCCC-CCccc
Confidence 23444566553 4455568899999966 88887
No 15
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.91 E-value=9.8e-06 Score=46.82 Aligned_cols=34 Identities=38% Similarity=1.005 Sum_probs=27.5
Q ss_pred cCCCCCCCCeEeecCCcceecCCCCceeCCCCCce
Q psy11798 66 ENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKC 100 (245)
Q Consensus 66 ~~~~~C~~~~C~~~~g~~~C~C~~g~~l~~~g~~C 100 (245)
..++.|.+ .|+++.++|.|.|++||.|..+++.|
T Consensus 3 ~~NGgC~h-~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 3 VNNGGCSH-ICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp TGGGGSSS-EEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCcCC-CCccCCCceEeECCCCCEECcCCCCC
Confidence 34566887 99999999999999999999888765
No 16
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.90 E-value=7.2e-06 Score=42.72 Aligned_cols=24 Identities=46% Similarity=1.135 Sum_probs=22.2
Q ss_pred cceecCCCCceeCCCCCceeecCc
Q psy11798 82 GVTCECPEGFMLSPNGMKCIDVRQ 105 (245)
Q Consensus 82 ~~~C~C~~g~~l~~~g~~C~~~~~ 105 (245)
+|.|.|++||.+.++++.|+||+|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 589999999999999999999986
No 17
>KOG1225|consensus
Probab=97.90 E-value=7.5e-05 Score=68.35 Aligned_cols=128 Identities=27% Similarity=0.597 Sum_probs=75.4
Q ss_pred ccccCCCCeeCCCccccccccCCCCCCCCCeeeeCCCCceEeCCCCceeCCCCCeeEeccccccCCCCCC-CCeEeecCC
Q psy11798 3 TTMSVTGYRLRVETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICE-DGKCINIAG 81 (245)
Q Consensus 3 ~C~C~~G~~~~g~~C~dideC~~~p~~c~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~~~~eC~~~~~~C~-~~~C~~~~g 81 (245)
.|.|+.||+ +..|+. --|..+ +.+.+.|++. +|.|++||+ |..|.. -.|.. .|. ++.+++ +
T Consensus 235 ic~c~~~~~--g~~c~~-~~C~~~-c~~~g~c~~G----~CIC~~Gf~----G~dC~e-~~Cp~---~cs~~g~~~~--g 296 (525)
T KOG1225|consen 235 ICECPEGYF--GPLCST-IYCPGG-CTGRGQCVEG----RCICPPGFT----GDDCDE-LVCPV---DCSGGGVCVD--G 296 (525)
T ss_pred eeecCCcee--CCcccc-ccCCCC-CcccceEeCC----eEeCCCCCc----CCCCCc-ccCCc---ccCCCceecC--C
Confidence 477888888 666652 223221 1223455543 688999998 777743 23432 154 344443 2
Q ss_pred cceecCCCCceeCCCCCceeecCcccccCCCcccCccCCccCCCCCceEecCCCccCCCCCcc--CCCCCCCCCceeccC
Q psy11798 82 GVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMGQAWGRYCLP--CPSPNSGEPATFWSH 159 (245)
Q Consensus 82 ~~~C~C~~g~~l~~~g~~C~~~~~~~C~~~~~~~~C~~~~~~~~~~~~C~C~~G~~~G~~C~~--C~~~~~~~~~~~c~~ 159 (245)
.|.|+++| .|+.|. +.. | ...|.....-. .-+|.|.+||. |..|+. |+..+.+.-.+.|..
T Consensus 297 --~CiC~~g~----~G~dCs-~~~--c-----padC~g~G~Ci--~G~C~C~~Gy~-G~~C~~~~C~~~g~cv~gC~C~~ 359 (525)
T KOG1225|consen 297 --ECICNPGY----SGKDCS-IRR--C-----PADCSGHGKCI--DGECLCDEGYT-GELCIQRACSGGGQCVNGCKCKK 359 (525)
T ss_pred --EeecCCCc----cccccc-ccc--C-----CccCCCCCccc--CCceEeCCCCc-CCcccccccCCCceeccCceecc
Confidence 78899999 677773 333 4 23344333111 34888999988 888875 666666655566766
Q ss_pred CCCCee
Q psy11798 160 YPKGFF 165 (245)
Q Consensus 160 ~~~g~~ 165 (245)
+++|..
T Consensus 360 Gw~G~d 365 (525)
T KOG1225|consen 360 GWRGPD 365 (525)
T ss_pred CccCCC
Confidence 555544
No 18
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.79 E-value=2.8e-05 Score=45.46 Aligned_cols=37 Identities=51% Similarity=1.037 Sum_probs=29.2
Q ss_pred cccccCC-CCCCCCCeeeeCCCCceEeCCCCceeCCCCCee
Q psy11798 19 DINECLE-LSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 58 (245)
Q Consensus 19 dideC~~-~p~~c~~~C~n~~gsy~C~C~~Gy~~~~~g~~C 58 (245)
++|+|.. .++..++.|++..++|.|.|++||. +++.|
T Consensus 1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CcccCcCCCCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 4788876 5655577999999999999999997 35444
No 19
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=97.73 E-value=4.9e-05 Score=59.76 Aligned_cols=124 Identities=30% Similarity=0.648 Sum_probs=74.2
Q ss_pred ccccCCCCee-CCCccccccccCCCCC---CC--CCeeeeCC-----CCceEeCCCCceeCCCCCeeEeccccccCCCCC
Q psy11798 3 TTMSVTGYRL-RVETCEDINECLELSN---QC--AFRCHNVP-----GSFRCICPYGYALAPDGRHCIDINECKENEGIC 71 (245)
Q Consensus 3 ~C~C~~G~~~-~g~~C~dideC~~~p~---~c--~~~C~n~~-----gsy~C~C~~Gy~~~~~g~~C~~~~eC~~~~~~C 71 (245)
.|.|.+||.+ +...|+...+|..... .| -+.|.+.. ..|.|.|.+||.+..+ .|. .+.|.... |
T Consensus 21 EC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~--vCv-p~~C~~~~--C 95 (197)
T PF06247_consen 21 ECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG--VCV-PNKCNNKD--C 95 (197)
T ss_dssp EEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS--SEE-EGGGSS-----
T ss_pred EEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC--eEc-hhhcCcee--c
Confidence 5999999999 7789998888976211 34 58898876 4799999999998765 365 35676544 8
Q ss_pred CCCeEeecC---CcceecCCCCceeCCCCCceeecCcccccCCCcccCccCCc--cCCCCCceEecCCCcc
Q psy11798 72 EDGKCINIA---GGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLR--KQPITVKECCCSMGQA 137 (245)
Q Consensus 72 ~~~~C~~~~---g~~~C~C~~g~~l~~~g~~C~~~~~~~C~~~~~~~~C~~~~--~~~~~~~~C~C~~G~~ 137 (245)
+.|.|+-.+ ....|+|.-|+. ..+...|....+-.| .-.|.... ....+-|+|.|..|+.
T Consensus 96 g~GKCI~d~~~~~~~~CSC~IGkV-~~dn~kCtk~G~T~C-----~LKCk~nE~CK~~~~~Y~C~~~~~~~ 160 (197)
T PF06247_consen 96 GSGKCILDPDNPNNPTCSCNIGKV-PDDNKKCTKTGETKC-----SLKCKENEECKLVDGYYKCVCKEGFP 160 (197)
T ss_dssp TTEEEEEEEGGGSEEEEEE-TEEE-TTTTTESEEEE-------------TTTEEEEEETTEEEEEE-TT-E
T ss_pred CCCeEEecCCCCCCceeEeeeceE-eccCCcccCCCccce-----eeecCCCcceeeeCcEEEeecCCCCC
Confidence 878997543 344899999987 446667755444445 12342222 4456679999999885
No 20
>KOG1225|consensus
Probab=97.48 E-value=0.00029 Score=64.61 Aligned_cols=100 Identities=29% Similarity=0.678 Sum_probs=64.5
Q ss_pred CccccCCCCeeCCCccccccccCCCCCCCCCeeeeCCCCceEeCCCCceeCCCCCeeEeccccccCCCCCC-CCeEeecC
Q psy11798 2 STTMSVTGYRLRVETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICE-DGKCINIA 80 (245)
Q Consensus 2 ~~C~C~~G~~~~g~~C~dideC~~~p~~c~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~~~~eC~~~~~~C~-~~~C~~~~ 80 (245)
..|+|++||. |..|..+ .|... +.-++.+++. .|.|++||+ |+.|.. ..|. ..|. +|.|++
T Consensus 265 G~CIC~~Gf~--G~dC~e~-~Cp~~-cs~~g~~~~g----~CiC~~g~~----G~dCs~-~~cp---adC~g~G~Ci~-- 326 (525)
T KOG1225|consen 265 GRCICPPGFT--GDDCDEL-VCPVD-CSGGGVCVDG----ECICNPGYS----GKDCSI-RRCP---ADCSGHGKCID-- 326 (525)
T ss_pred CeEeCCCCCc--CCCCCcc-cCCcc-cCCCceecCC----EeecCCCcc----cccccc-ccCC---ccCCCCCcccC--
Confidence 4799999999 8888642 25332 2223444432 899999999 888853 2243 3377 778982
Q ss_pred CcceecCCCCceeCCCCCceeecCcccccCCCcccCccCCccCCCCCceEecCCCccCCCC
Q psy11798 81 GGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMGQAWGRY 141 (245)
Q Consensus 81 g~~~C~C~~g~~l~~~g~~C~~~~~~~C~~~~~~~~C~~~~~~~~~~~~C~C~~G~~~G~~ 141 (245)
-.|.|.+|| .|..|... . | .+...-.. - |.|..||. |.+
T Consensus 327 --G~C~C~~Gy----~G~~C~~~--~-C---------~~~g~cv~--g-C~C~~Gw~-G~d 365 (525)
T KOG1225|consen 327 --GECLCDEGY----TGELCIQR--A-C---------SGGGQCVN--G-CKCKKGWR-GPD 365 (525)
T ss_pred --CceEeCCCC----cCCccccc--c-c---------CCCceecc--C-ceeccCcc-CCC
Confidence 379999999 67777422 1 4 33221111 2 88999987 665
No 21
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.47 E-value=0.00015 Score=41.82 Aligned_cols=36 Identities=50% Similarity=1.030 Sum_probs=28.6
Q ss_pred cccccCC-CCCCCCCeeeeCCCCceEeCCCCceeCCCCCee
Q psy11798 19 DINECLE-LSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 58 (245)
Q Consensus 19 dideC~~-~p~~c~~~C~n~~gsy~C~C~~Gy~~~~~g~~C 58 (245)
++++|.. .++..++.|++..++|.|.|++||. ++.|
T Consensus 1 ~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~C 37 (38)
T cd00054 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT----GRNC 37 (38)
T ss_pred CcccCCCCCCcCCCCEeECCCCCeEeECCCCCc----CCcC
Confidence 3677876 5555578999999999999999998 6555
No 22
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.46 E-value=8.2e-05 Score=41.86 Aligned_cols=28 Identities=36% Similarity=0.878 Sum_probs=24.8
Q ss_pred cCCCCCCCCCeeeeCC-CCceEeCCCCce
Q psy11798 23 CLELSNQCAFRCHNVP-GSFRCICPYGYA 50 (245)
Q Consensus 23 C~~~p~~c~~~C~n~~-gsy~C~C~~Gy~ 50 (245)
|.++|+.++++|++.. ++|.|.|++||+
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCc
Confidence 4566777799999999 999999999998
No 23
>KOG0994|consensus
Probab=97.35 E-value=0.0013 Score=64.35 Aligned_cols=97 Identities=30% Similarity=0.706 Sum_probs=54.2
Q ss_pred eCCCCceeCCCCCeeE---eccccccCCCCCCCCeEeecCCccee-cCCCCceeCC---CCCceeecCcccccCCCccc-
Q psy11798 44 ICPYGYALAPDGRHCI---DINECKENEGICEDGKCINIAGGVTC-ECPEGFMLSP---NGMKCIDVRQDVCYDSYQEG- 115 (245)
Q Consensus 44 ~C~~Gy~~~~~g~~C~---~~~eC~~~~~~C~~~~C~~~~g~~~C-~C~~g~~l~~---~g~~C~~~~~~~C~~~~~~~- 115 (245)
.|.+||-..|+=+.|+ -.++|....+.|. .|.+..+.+.| .|..||...+ .+..| +..+|....+++
T Consensus 845 qCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi--~CqD~T~G~~CdrCl~GyyGdP~lg~g~~C---rPCpCP~gp~Sg~ 919 (1758)
T KOG0994|consen 845 QCQPGYWGFPECRPCQCNGHADTCDPITGACI--DCQDSTTGHSCDRCLDGYYGDPRLGSGIGC---RPCPCPDGPASGR 919 (1758)
T ss_pred ccCCCccCCCcCccccccCcccccCccccccc--cccccccccchhhhhccccCCcccCCCCCC---CCCCCCCCCccch
Confidence 4555555444444443 1345554444454 46666677777 5888885432 23334 233354433322
Q ss_pred ----CccCCccCCCCCceEecCCCccCCCCCccCCCC
Q psy11798 116 ----TCTLLRKQPITVKECCCSMGQAWGRYCLPCPSP 148 (245)
Q Consensus 116 ----~C~~~~~~~~~~~~C~C~~G~~~G~~C~~C~~~ 148 (245)
.|.. .+....-.|.|.+||. |..|+.|..+
T Consensus 920 ~~A~sC~~--d~~t~~ivC~C~~GY~-G~RCe~CA~~ 953 (1758)
T KOG0994|consen 920 QHADSCYL--DTRTQQIVCHCQEGYS-GSRCEICADN 953 (1758)
T ss_pred hccccccc--cccccceeeecccCcc-ccchhhhccc
Confidence 1221 2333456899999999 9999998654
No 24
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.20 E-value=0.0003 Score=40.66 Aligned_cols=27 Identities=37% Similarity=0.807 Sum_probs=20.4
Q ss_pred CCCCCC--CCeeeeCCCCceEeCCCCcee
Q psy11798 25 ELSNQC--AFRCHNVPGSFRCICPYGYAL 51 (245)
Q Consensus 25 ~~p~~c--~~~C~n~~gsy~C~C~~Gy~~ 51 (245)
.++..| .+.|.++.++|.|.|++||..
T Consensus 3 ~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 3 ENNGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp TGGGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 334455 689999999999999999993
No 25
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.78 E-value=0.0016 Score=37.77 Aligned_cols=32 Identities=44% Similarity=1.169 Sum_probs=25.2
Q ss_pred eccccccCCCCCC-CCeEeecCCcceecCCCCce
Q psy11798 60 DINECKENEGICE-DGKCINIAGGVTCECPEGFM 92 (245)
Q Consensus 60 ~~~eC~~~~~~C~-~~~C~~~~g~~~C~C~~g~~ 92 (245)
++++|... ..|. ++.|+++.++|.|.|++||.
T Consensus 1 d~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CcccCcCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence 36778752 3487 45999999999999999994
No 26
>KOG1226|consensus
Probab=96.67 E-value=0.0093 Score=56.39 Aligned_cols=130 Identities=25% Similarity=0.566 Sum_probs=69.6
Q ss_pred CccccCCCCeeCCCccc-cc---------cccCCCCC--CC--CCeeeeCCCCceEeCCCCceeCCCCCeeE-ecccccc
Q psy11798 2 STTMSVTGYRLRVETCE-DI---------NECLELSN--QC--AFRCHNVPGSFRCICPYGYALAPDGRHCI-DINECKE 66 (245)
Q Consensus 2 ~~C~C~~G~~~~g~~C~-di---------deC~~~p~--~c--~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-~~~eC~~ 66 (245)
+.|.|.+||. |+.|+ .. +.|..... .| .+.|.-. +|.|.+.......|+.|+ |--.|..
T Consensus 478 G~C~C~~G~~--G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~G~fCECDnfsC~r 551 (783)
T KOG1226|consen 478 GQCRCDEGWL--GKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIYGKFCECDNFSCER 551 (783)
T ss_pred cceecCCCCC--CCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCceeeeeeeccCccccc
Confidence 4699999999 88886 22 22332111 23 3334322 577876665444577786 3223443
Q ss_pred CC-CCCC-CCeEeecCCcceecCCCCceeCCCCCcee-ecCcccccCCCcccCccCCccCCCCCceEecCCC-ccCCCCC
Q psy11798 67 NE-GICE-DGKCINIAGGVTCECPEGFMLSPNGMKCI-DVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMG-QAWGRYC 142 (245)
Q Consensus 67 ~~-~~C~-~~~C~~~~g~~~C~C~~g~~l~~~g~~C~-~~~~~~C~~~~~~~~C~~~~~~~~~~~~C~C~~G-~~~G~~C 142 (245)
.. -.|. +|+|.-. +|.|.+|| .|..|. +...+.|.+. +...|...+.-.- -+|.|... |. |..|
T Consensus 552 ~~g~lC~g~G~C~CG----~CvC~~Gw----tG~~C~C~~std~C~~~-~G~iCSGrG~C~C--g~C~C~~~~~s-G~~C 619 (783)
T KOG1226|consen 552 HKGVLCGGHGRCECG----RCVCNPGW----TGSACNCPLSTDTCESS-DGQICSGRGTCEC--GRCKCTDPPYS-GEFC 619 (783)
T ss_pred ccCcccCCCCeEeCC----cEEcCCCC----ccCCCCCCCCCccccCC-CCceeCCCceeeC--CceEcCCCCcC-cchh
Confidence 22 2366 6666432 78999999 677773 1222225331 1222332110000 25666654 77 9999
Q ss_pred ccCCCCC
Q psy11798 143 LPCPSPN 149 (245)
Q Consensus 143 ~~C~~~~ 149 (245)
|.||.-.
T Consensus 620 E~cptc~ 626 (783)
T KOG1226|consen 620 EKCPTCP 626 (783)
T ss_pred hcCCCCC
Confidence 9877544
No 27
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.43 E-value=0.0019 Score=37.27 Aligned_cols=28 Identities=39% Similarity=0.895 Sum_probs=20.6
Q ss_pred cCCCCCC-CCeEeecCCcceecCCCCcee
Q psy11798 66 ENEGICE-DGKCINIAGGVTCECPEGFML 93 (245)
Q Consensus 66 ~~~~~C~-~~~C~~~~g~~~C~C~~g~~l 93 (245)
..++.|. ++.|+++.++|.|.|++||..
T Consensus 3 ~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 3 ENNGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp TGGGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 3445677 789999999999999999954
No 28
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.36 E-value=0.005 Score=34.59 Aligned_cols=24 Identities=46% Similarity=1.071 Sum_probs=20.3
Q ss_pred CCCCCCeeeeCCCCceEeCCCCce
Q psy11798 27 SNQCAFRCHNVPGSFRCICPYGYA 50 (245)
Q Consensus 27 p~~c~~~C~n~~gsy~C~C~~Gy~ 50 (245)
++..++.|++..+.|.|.|+.||.
T Consensus 7 ~C~~~~~C~~~~~~~~C~C~~g~~ 30 (36)
T cd00053 7 PCSNGGTCVNTPGSYRCVCPPGYT 30 (36)
T ss_pred CCCCCCEEecCCCCeEeECCCCCc
Confidence 333358999999999999999998
No 29
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.34 E-value=0.0049 Score=34.90 Aligned_cols=18 Identities=56% Similarity=1.385 Sum_probs=17.4
Q ss_pred eeeeCCCCceEeCCCCce
Q psy11798 33 RCHNVPGSFRCICPYGYA 50 (245)
Q Consensus 33 ~C~n~~gsy~C~C~~Gy~ 50 (245)
+|++..++|.|.|++||.
T Consensus 12 ~C~~~~~~~~C~C~~g~~ 29 (35)
T smart00181 12 TCINTPGSYTCSCPPGYT 29 (35)
T ss_pred EEECCCCCeEeECCCCCc
Confidence 899999999999999998
No 30
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.10 E-value=0.0049 Score=50.86 Aligned_cols=43 Identities=28% Similarity=0.767 Sum_probs=35.9
Q ss_pred CCeeEeccccccCCCCCCCCeEeecCCcceecCCCCceeCCCCC
Q psy11798 55 GRHCIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGM 98 (245)
Q Consensus 55 g~~C~~~~eC~~~~~~C~~~~C~~~~g~~~C~C~~g~~l~~~g~ 98 (245)
++.|.++++|...++.|.+ .|.++.|+|.|.|++||.+..+++
T Consensus 181 ~~~C~~~~~C~~~~~~c~~-~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 181 GKICVVPDLCATLSHVCQQ-VCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred cccCcCchhhcCCCCCccc-eEEcCCCCEEeECCCCccCCCCCC
Confidence 5678889999876777876 899999999999999998766553
No 31
>PF00683 TB: TB domain; InterPro: IPR002212 Transforming growth factor beta (TGF-beta)-binding protein-like (TB) domain comes from human fibrillin-1[]. This domain is found in fibrillins and latent TGF-beta-binding proteins (LTBPs) which are localized to fibrillar structures in the extracellular matrix [].; GO: 0005488 binding; PDB: 2W86_A 1UZJ_B 1UZQ_A 1UZK_A 1UZP_A 1APJ_A 1KSQ_A.
Probab=95.96 E-value=9.9e-05 Score=44.18 Aligned_cols=30 Identities=53% Similarity=1.318 Sum_probs=21.6
Q ss_pred CCCceEecCCCccCCCCCccCCCCCCCCCc
Q psy11798 125 ITVKECCCSMGQAWGRYCLPCPSPNSGEPA 154 (245)
Q Consensus 125 ~~~~~C~C~~G~~~G~~C~~C~~~~~~~~~ 154 (245)
..+..|.|..|.+||..|+.||..++.+|.
T Consensus 11 ~tk~~CCCs~G~aWG~~Ce~CP~~~t~ef~ 40 (42)
T PF00683_consen 11 VTKSECCCSVGRAWGSPCEPCPPPGTDEFN 40 (42)
T ss_dssp EEHHHHHTTT-SEETTTTEE---TTSHHHH
T ss_pred eeccccCCCCCCcCCCccccCCCCCChHHh
Confidence 445689999999999999999999887664
No 32
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.83 E-value=0.0036 Score=27.65 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=9.4
Q ss_pred ccccCCCCeeCCCcc
Q psy11798 3 TTMSVTGYRLRVETC 17 (245)
Q Consensus 3 ~C~C~~G~~~~g~~C 17 (245)
.|+|++||+ |.+|
T Consensus 1 ~C~C~~G~~--G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWT--GPNC 13 (13)
T ss_dssp EEEE-TTEE--TTTT
T ss_pred CccCcCCCc--CCCC
Confidence 488999998 7665
No 33
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=95.78 E-value=0.012 Score=33.55 Aligned_cols=30 Identities=40% Similarity=1.164 Sum_probs=23.4
Q ss_pred ccccccCCCCCC-CCeEeecCCcceecCCCCc
Q psy11798 61 INECKENEGICE-DGKCINIAGGVTCECPEGF 91 (245)
Q Consensus 61 ~~eC~~~~~~C~-~~~C~~~~g~~~C~C~~g~ 91 (245)
+++|... ..|. ++.|++..+.|.|.|+.+|
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~ 32 (38)
T cd00054 2 IDECASG-NPCQNGGTCVNTVGSYRCSCPPGY 32 (38)
T ss_pred cccCCCC-CCcCCCCEeECCCCCeEeECCCCC
Confidence 4667652 2376 5699999999999999999
No 34
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=95.49 E-value=0.014 Score=46.18 Aligned_cols=99 Identities=25% Similarity=0.637 Sum_probs=58.6
Q ss_pred CC-CCeeeeCCCCceEeCCCCceeCCCCCeeEecccccc---CCCCCC-CCeEeecC-----CcceecCCCCceeCCCCC
Q psy11798 29 QC-AFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKE---NEGICE-DGKCINIA-----GGVTCECPEGFMLSPNGM 98 (245)
Q Consensus 29 ~c-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~~~~eC~~---~~~~C~-~~~C~~~~-----g~~~C~C~~g~~l~~~g~ 98 (245)
.| .+..+-..+.|.|.|.+||.+.. ...|+...+|.. ....|. .+.|++.. ..|.|.|.+||.+.. .
T Consensus 7 ~CKNG~LiQMSNHfEC~Cnegfvl~~-EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~--~ 83 (197)
T PF06247_consen 7 ICKNGYLIQMSNHFECKCNEGFVLKN-ENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQ--G 83 (197)
T ss_dssp --BTEEEEEESSEEEEEESTTEEEEE-TTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESS--S
T ss_pred cccCCEEEEccCceEEEcCCCcEEcc-ccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeC--C
Confidence 35 56666677889999999999874 567998888864 223577 47898775 468999999997753 2
Q ss_pred ceeecCcccccCCCcccCccCCc----cCCCCCceEecCCCcc
Q psy11798 99 KCIDVRQDVCYDSYQEGTCTLLR----KQPITVKECCCSMGQA 137 (245)
Q Consensus 99 ~C~~~~~~~C~~~~~~~~C~~~~----~~~~~~~~C~C~~G~~ 137 (245)
.|.. .+ | ....|..+. ........|+|..|+.
T Consensus 84 vCvp-~~--C----~~~~Cg~GKCI~d~~~~~~~~CSC~IGkV 119 (197)
T PF06247_consen 84 VCVP-NK--C----NNKDCGSGKCILDPDNPNNPTCSCNIGKV 119 (197)
T ss_dssp SEEE-GG--G----SS---TTEEEEEEEGGGSEEEEEE-TEEE
T ss_pred eEch-hh--c----CceecCCCeEEecCCCCCCceeEeeeceE
Confidence 4532 22 4 223343332 2333345999999986
No 35
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=95.47 E-value=0.0078 Score=33.69 Aligned_cols=23 Identities=52% Similarity=1.412 Sum_probs=20.1
Q ss_pred CCC-CCeEeecC-CcceecCCCCce
Q psy11798 70 ICE-DGKCINIA-GGVTCECPEGFM 92 (245)
Q Consensus 70 ~C~-~~~C~~~~-g~~~C~C~~g~~ 92 (245)
.|. +|+|++.. +.|.|.|++||.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCc
Confidence 388 57999999 999999999994
No 36
>KOG0994|consensus
Probab=94.81 E-value=0.074 Score=52.66 Aligned_cols=17 Identities=41% Similarity=1.048 Sum_probs=13.8
Q ss_pred ceEecCCCccCCCCCccC
Q psy11798 128 KECCCSMGQAWGRYCLPC 145 (245)
Q Consensus 128 ~~C~C~~G~~~G~~C~~C 145 (245)
-.|.|.+||+ |..|..|
T Consensus 1084 GQCqCkpGfG-GR~C~qC 1100 (1758)
T KOG0994|consen 1084 GQCQCKPGFG-GRTCSQC 1100 (1758)
T ss_pred cceeccCCCC-CcchhHH
Confidence 3799999999 8888644
No 37
>KOG1226|consensus
Probab=93.78 E-value=0.23 Score=47.33 Aligned_cols=84 Identities=26% Similarity=0.634 Sum_probs=51.1
Q ss_pred CccccCCCCee--CCCccc-cccccCCCCC-CC--CCeeeeCCCCceEeCCCCceeCCCCCeeE---eccccccCCCC-C
Q psy11798 2 STTMSVTGYRL--RVETCE-DINECLELSN-QC--AFRCHNVPGSFRCICPYGYALAPDGRHCI---DINECKENEGI-C 71 (245)
Q Consensus 2 ~~C~C~~G~~~--~g~~C~-dideC~~~p~-~c--~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~---~~~eC~~~~~~-C 71 (245)
..|+|.+...+ .|..|| |--.|..... .| +++|.-. +|.|.+||+ |..|+ +.+.|....+. |
T Consensus 525 GqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG----~CvC~~Gwt----G~~C~C~~std~C~~~~G~iC 596 (783)
T KOG1226|consen 525 GQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCECG----RCVCNPGWT----GSACNCPLSTDTCESSDGQIC 596 (783)
T ss_pred CceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeCC----cEEcCCCCc----cCCCCCCCCCccccCCCCcee
Confidence 36888887775 677887 4444554332 24 4555432 799999999 88885 55667654432 4
Q ss_pred C-CCeEeecCCcceecCCCC-ceeCCCCCcee
Q psy11798 72 E-DGKCINIAGGVTCECPEG-FMLSPNGMKCI 101 (245)
Q Consensus 72 ~-~~~C~~~~g~~~C~C~~g-~~l~~~g~~C~ 101 (245)
. .|+|.-. +|.|... | .|..|+
T Consensus 597 SGrG~C~Cg----~C~C~~~~~----sG~~CE 620 (783)
T KOG1226|consen 597 SGRGTCECG----RCKCTDPPY----SGEFCE 620 (783)
T ss_pred CCCceeeCC----ceEcCCCCc----Ccchhh
Confidence 4 4555432 4666544 5 577773
No 38
>smart00181 EGF Epidermal growth factor-like domain.
Probab=93.74 E-value=0.096 Score=29.36 Aligned_cols=23 Identities=48% Similarity=1.256 Sum_probs=19.4
Q ss_pred CCCCCeEeecCCcceecCCCCce
Q psy11798 70 ICEDGKCINIAGGVTCECPEGFM 92 (245)
Q Consensus 70 ~C~~~~C~~~~g~~~C~C~~g~~ 92 (245)
.|.++.|++..++|.|.|++||.
T Consensus 7 ~C~~~~C~~~~~~~~C~C~~g~~ 29 (35)
T smart00181 7 PCSNGTCINTPGSYTCSCPPGYT 29 (35)
T ss_pred CCCCCEEECCCCCeEeECCCCCc
Confidence 37733899999999999999994
No 39
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=93.48 E-value=0.11 Score=28.72 Aligned_cols=24 Identities=38% Similarity=1.102 Sum_probs=20.0
Q ss_pred CCCC-CCeEeecCCcceecCCCCce
Q psy11798 69 GICE-DGKCINIAGGVTCECPEGFM 92 (245)
Q Consensus 69 ~~C~-~~~C~~~~g~~~C~C~~g~~ 92 (245)
..|. ++.|++..+.|.|.|+.||.
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~ 30 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYT 30 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCc
Confidence 3476 46999999999999999994
No 40
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=88.32 E-value=0.42 Score=39.29 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=30.0
Q ss_pred CCCceeecCcccccCCCcccCccCCccCCCCCceEecCCCccC
Q psy11798 96 NGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMGQAW 138 (245)
Q Consensus 96 ~g~~C~~~~~~~C~~~~~~~~C~~~~~~~~~~~~C~C~~G~~~ 138 (245)
.+..|.++++ |.. .++.|.+.+.+..|+|.|.|+.||..
T Consensus 180 ~~~~C~~~~~--C~~--~~~~c~~~C~~~~g~~~c~c~~g~~~ 218 (224)
T cd01475 180 QGKICVVPDL--CAT--LSHVCQQVCISTPGSYLCACTEGYAL 218 (224)
T ss_pred ccccCcCchh--hcC--CCCCccceEEcCCCCEEeECCCCccC
Confidence 4556766666 843 46678888899999999999999973
No 41
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=86.63 E-value=0.82 Score=26.34 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=18.6
Q ss_pred CCCCCCeeeeCC-CCceEeCCCCceeC
Q psy11798 27 SNQCAFRCHNVP-GSFRCICPYGYALA 52 (245)
Q Consensus 27 p~~c~~~C~n~~-gsy~C~C~~Gy~~~ 52 (245)
.++-++.|.+.. |++.|.|..||...
T Consensus 6 ~cP~NA~C~~~~dG~eecrCllgyk~~ 32 (37)
T PF12946_consen 6 KCPANAGCFRYDDGSEECRCLLGYKKV 32 (37)
T ss_dssp ---TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred cCCCCcccEEcCCCCEEEEeeCCcccc
Confidence 333467898877 99999999999854
No 42
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=85.75 E-value=1.2 Score=24.78 Aligned_cols=23 Identities=35% Similarity=0.813 Sum_probs=17.8
Q ss_pred CCCeeeeCCCCceEeCCCCceeCCCCCee
Q psy11798 30 CAFRCHNVPGSFRCICPYGYALAPDGRHC 58 (245)
Q Consensus 30 c~~~C~n~~gsy~C~C~~Gy~~~~~g~~C 58 (245)
.+++|++. ..+|.|.+||. |..|
T Consensus 10 ~~G~C~~~--~g~C~C~~g~~----G~~C 32 (32)
T PF07974_consen 10 GHGTCVSP--CGRCVCDSGYT----GPDC 32 (32)
T ss_pred CCCEEeCC--CCEEECCCCCc----CCCC
Confidence 37888765 56899999998 6554
No 43
>KOG1836|consensus
Probab=85.38 E-value=1.2 Score=46.92 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=18.0
Q ss_pred CCCceEe-cCCCccCCCCCccCCC
Q psy11798 125 ITVKECC-CSMGQAWGRYCLPCPS 147 (245)
Q Consensus 125 ~~~~~C~-C~~G~~~G~~C~~C~~ 147 (245)
.....|. |++||. |..|+.|..
T Consensus 794 ~~~~iCk~Cp~gyt-G~rCe~c~d 816 (1705)
T KOG1836|consen 794 ILEVVCKNCPPGYT-GLRCEECAD 816 (1705)
T ss_pred ccceecCCCCCCCc-ccccccCCC
Confidence 5567898 999999 999988643
No 44
>KOG1836|consensus
Probab=79.65 E-value=6.2 Score=41.94 Aligned_cols=52 Identities=31% Similarity=0.788 Sum_probs=26.8
Q ss_pred ceE-eCCCCceeCCCCCeeEeccccccCCCCCC-CCeEeec--CCcceec-CCCCceeCCCCCcee
Q psy11798 41 FRC-ICPYGYALAPDGRHCIDINECKENEGICE-DGKCINI--AGGVTCE-CPEGFMLSPNGMKCI 101 (245)
Q Consensus 41 y~C-~C~~Gy~~~~~g~~C~~~~eC~~~~~~C~-~~~C~~~--~g~~~C~-C~~g~~l~~~g~~C~ 101 (245)
-+| .|..||...++...- +.|..-+ |. .+.|..+ .....|. |+++| .|..|.
T Consensus 756 ~~C~~C~~GfYg~~~~~~~---~dC~~C~--Cp~~~~~~~~~~~~~~iCk~Cp~gy----tG~rCe 812 (1705)
T KOG1836|consen 756 GQCAQCVDGFYGLPDLGTS---GDCQPCP--CPNGGACGQTPEILEVVCKNCPPGY----TGLRCE 812 (1705)
T ss_pred CchhhhcCCCCCccccCCC---CCCccCC--CCCChhhcCcCcccceecCCCCCCC----cccccc
Confidence 344 577777644432211 1144322 43 2344433 3456787 99998 566664
No 45
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=79.49 E-value=1.9 Score=32.04 Aligned_cols=39 Identities=26% Similarity=0.592 Sum_probs=27.3
Q ss_pred ccccCCC-CCCC-CCeeeeCC--CCceEeCCCCceeCCCCCeeEecc
Q psy11798 20 INECLEL-SNQC-AFRCHNVP--GSFRCICPYGYALAPDGRHCIDIN 62 (245)
Q Consensus 20 ideC~~~-p~~c-~~~C~n~~--gsy~C~C~~Gy~~~~~g~~C~~~~ 62 (245)
+.+|.+. .+.| ++.|.-.+ ..+.|.|..||. |.+|+-.+
T Consensus 42 i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GYt----GeRCEh~d 84 (139)
T PHA03099 42 IRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYT----GIRCQHVV 84 (139)
T ss_pred cccCChhhCCEeECCEEEeeccCCCceeECCCCcc----ccccccee
Confidence 4455432 2356 67887654 689999999999 88897443
No 46
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=78.40 E-value=1.3 Score=24.89 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=8.6
Q ss_pred CccccCCCCee
Q psy11798 2 STTMSVTGYRL 12 (245)
Q Consensus 2 ~~C~C~~G~~~ 12 (245)
.+|.|++||.+
T Consensus 18 ~~C~CPeGyIl 28 (34)
T PF09064_consen 18 GQCFCPEGYIL 28 (34)
T ss_pred CceeCCCceEe
Confidence 36888888886
No 47
>PHA02887 EGF-like protein; Provisional
Probab=76.17 E-value=2.3 Score=31.11 Aligned_cols=37 Identities=30% Similarity=0.710 Sum_probs=25.8
Q ss_pred ccccCCC-CCCC-CCeeeeCC--CCceEeCCCCceeCCCCCeeEe
Q psy11798 20 INECLEL-SNQC-AFRCHNVP--GSFRCICPYGYALAPDGRHCID 60 (245)
Q Consensus 20 ideC~~~-p~~c-~~~C~n~~--gsy~C~C~~Gy~~~~~g~~C~~ 60 (245)
+++|... ...| +|.|.-.. ....|.|+.||. |.+|+.
T Consensus 83 f~pC~~eyk~YCiHG~C~yI~dL~epsCrC~~GYt----G~RCE~ 123 (126)
T PHA02887 83 FEKCKNDFNDFCINGECMNIIDLDEKFCICNKGYT----GIRCDE 123 (126)
T ss_pred ccccChHhhCEeeCCEEEccccCCCceeECCCCcc----cCCCCc
Confidence 4455432 2346 78887654 568999999999 888864
No 48
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=65.18 E-value=6.4 Score=23.67 Aligned_cols=20 Identities=30% Similarity=0.742 Sum_probs=16.9
Q ss_pred ceEecCCCccCCCCCccCCCC
Q psy11798 128 KECCCSMGQAWGRYCLPCPSP 148 (245)
Q Consensus 128 ~~C~C~~G~~~G~~C~~C~~~ 148 (245)
-.|.|++++. |..|+.|+.+
T Consensus 18 G~C~C~~~~~-G~~C~~C~~g 37 (46)
T smart00180 18 GQCECKPNVT-GRRCDRCAPG 37 (46)
T ss_pred CEEECCCCCC-CCCCCcCCCC
Confidence 4899999998 9999988654
No 49
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=63.48 E-value=6.8 Score=23.94 Aligned_cols=20 Identities=30% Similarity=0.767 Sum_probs=17.1
Q ss_pred ceEecCCCccCCCCCccCCCC
Q psy11798 128 KECCCSMGQAWGRYCLPCPSP 148 (245)
Q Consensus 128 ~~C~C~~G~~~G~~C~~C~~~ 148 (245)
-.|.|.+++. |..|+.|+.+
T Consensus 19 G~C~C~~~~~-G~~C~~C~~g 38 (50)
T cd00055 19 GQCECKPNTT-GRRCDRCAPG 38 (50)
T ss_pred CEEeCCCcCC-CCCCCCCCCC
Confidence 4799999999 9999988654
No 50
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=62.61 E-value=6.7 Score=29.24 Aligned_cols=40 Identities=35% Similarity=0.980 Sum_probs=27.1
Q ss_pred cccccc-CCCCCCCCeEeec--CCcceecCCCCceeCCCCCceeecC
Q psy11798 61 INECKE-NEGICEDGKCINI--AGGVTCECPEGFMLSPNGMKCIDVR 104 (245)
Q Consensus 61 ~~eC~~-~~~~C~~~~C~~~--~g~~~C~C~~g~~l~~~g~~C~~~~ 104 (245)
+..|.. ..+-|.||.|.-. ...+.|.|..|| .|.+|+..+
T Consensus 42 i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GY----tGeRCEh~d 84 (139)
T PHA03099 42 IRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGY----TGIRCQHVV 84 (139)
T ss_pred cccCChhhCCEeECCEEEeeccCCCceeECCCCc----cccccccee
Confidence 444542 2345777788654 467899999999 788886443
No 51
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=58.86 E-value=5.7 Score=24.08 Aligned_cols=21 Identities=29% Similarity=0.784 Sum_probs=16.0
Q ss_pred CceEecCCCccCCCCCccCCCC
Q psy11798 127 VKECCCSMGQAWGRYCLPCPSP 148 (245)
Q Consensus 127 ~~~C~C~~G~~~G~~C~~C~~~ 148 (245)
...|.|.+++. |..|+.|..+
T Consensus 17 ~G~C~C~~~~~-G~~C~~C~~g 37 (49)
T PF00053_consen 17 TGQCVCKPGTT-GPRCDQCKPG 37 (49)
T ss_dssp CEEESBSTTEE-STTS-EE-TT
T ss_pred CCEEecccccc-CCcCcCCCCc
Confidence 46899999999 9999988653
No 52
>KOG1218|consensus
Probab=58.72 E-value=48 Score=28.20 Aligned_cols=19 Identities=26% Similarity=0.697 Sum_probs=12.7
Q ss_pred CCCCceEecCCCccCCCCCc
Q psy11798 124 PITVKECCCSMGQAWGRYCL 143 (245)
Q Consensus 124 ~~~~~~C~C~~G~~~G~~C~ 143 (245)
....-.|.|.+||. |..|.
T Consensus 158 ~~~~~~c~c~~g~~-g~~~~ 176 (316)
T KOG1218|consen 158 DCKNGICTCQPGFV-GVFCV 176 (316)
T ss_pred CCCCCceeccCCcc-ccccc
Confidence 33445778888887 66655
No 53
>KOG1215|consensus
Probab=56.99 E-value=16 Score=36.46 Aligned_cols=76 Identities=32% Similarity=0.702 Sum_probs=53.1
Q ss_pred cccccCCCCCCCCCeeeeCCCCceEeCCCCceeCCCCCeeEeccccccCCCCCCCCeEe-ecCCcceecCCCCceeCCCC
Q psy11798 19 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCI-NIAGGVTCECPEGFMLSPNG 97 (245)
Q Consensus 19 dideC~~~p~~c~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~~~~eC~~~~~~C~~~~C~-~~~g~~~C~C~~g~~l~~~g 97 (245)
.+++|......+.+.+.+......|.|..++.+...+.. +.+.|...++.|.+ .|. +..+.+.|.|..||.+...+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~Csq-~C~~~~p~~~~c~c~~g~~~~~~~ 400 (877)
T KOG1215|consen 324 GLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLPLGART--DSNPCESDNGGCSQ-LCVPNSPGTFKCACSPGYELRLDK 400 (877)
T ss_pred ccccchhhcccccCCCCccccCCcccCCccceecccccc--cCCcccccCCccce-eccCCCCCceeEecCCCcEeccCC
Confidence 455555544556667777778888999999887655544 33455555677876 777 56888999999999775544
No 54
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=56.62 E-value=31 Score=21.00 Aligned_cols=18 Identities=44% Similarity=0.849 Sum_probs=12.6
Q ss_pred CCeeeeCCCCceEeCCCCceeC
Q psy11798 31 AFRCHNVPGSFRCICPYGYALA 52 (245)
Q Consensus 31 ~~~C~n~~gsy~C~C~~Gy~~~ 52 (245)
++.|++ -.|.|++||...
T Consensus 31 ~s~C~~----g~C~C~~g~~~~ 48 (52)
T PF01683_consen 31 GSVCVN----GRCQCPPGYVEV 48 (52)
T ss_pred cCEEcC----CEeECCCCCEec
Confidence 456644 379999998743
No 55
>PHA02887 EGF-like protein; Provisional
Probab=56.27 E-value=10 Score=27.79 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=17.1
Q ss_pred CCCCCceEecCCCccCCCCCcc
Q psy11798 123 QPITVKECCCSMGQAWGRYCLP 144 (245)
Q Consensus 123 ~~~~~~~C~C~~G~~~G~~C~~ 144 (245)
.......|.|..||. |.+|+.
T Consensus 103 ~dL~epsCrC~~GYt-G~RCE~ 123 (126)
T PHA02887 103 IDLDEKFCICNKGYT-GIRCDE 123 (126)
T ss_pred ccCCCceeECCCCcc-cCCCCc
Confidence 344568999999999 999974
No 56
>KOG3514|consensus
Probab=50.38 E-value=10 Score=38.15 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=30.2
Q ss_pred ccCCCCCCCCCeeeeCCCCceEeCC-CCceeCCCCCeeE
Q psy11798 22 ECLELSNQCAFRCHNVPGSFRCICP-YGYALAPDGRHCI 59 (245)
Q Consensus 22 eC~~~p~~c~~~C~n~~gsy~C~C~-~Gy~~~~~g~~C~ 59 (245)
.|.++||.+++.|....++|.|.|. .+|. |+.|+
T Consensus 625 ~C~~nPC~N~g~C~egwNrfiCDCs~T~~~----G~~Ce 659 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGWNRFICDCSGTGFE----GRTCE 659 (1591)
T ss_pred ccCCCcccCCCCccccccccccccccCccc----Ccccc
Confidence 5889999999999999999999995 4787 88886
No 57
>KOG3516|consensus
Probab=49.74 E-value=13 Score=37.81 Aligned_cols=41 Identities=27% Similarity=0.647 Sum_probs=34.4
Q ss_pred CccccccccCCCCCCCCCeeeeCCCCceEeCC-CCceeCCCCCeeE
Q psy11798 15 ETCEDINECLELSNQCAFRCHNVPGSFRCICP-YGYALAPDGRHCI 59 (245)
Q Consensus 15 ~~C~dideC~~~p~~c~~~C~n~~gsy~C~C~-~Gy~~~~~g~~C~ 59 (245)
..|.-+|.|.+++|+.++.|.-....|.|.|. .||+ |..|.
T Consensus 540 d~C~i~drClPN~CehgG~C~Qs~~~f~C~C~~TGY~----GatCH 581 (1306)
T KOG3516|consen 540 DMCGISDRCLPNPCEHGGKCSQSWDDFECNCELTGYK----GATCH 581 (1306)
T ss_pred cccccccccCCccccCCCcccccccceeEeccccccc----ccccc
Confidence 34667788888888889999888889999998 8999 77775
No 58
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=49.26 E-value=16 Score=22.65 Aligned_cols=22 Identities=36% Similarity=1.028 Sum_probs=16.3
Q ss_pred eEeCCCCceeCCCCCeeEecccc
Q psy11798 42 RCICPYGYALAPDGRHCIDINEC 64 (245)
Q Consensus 42 ~C~C~~Gy~~~~~g~~C~~~~eC 64 (245)
-|.|++||.+..+ ..|+...+|
T Consensus 34 gC~C~~G~v~~~~-~~CV~~~~C 55 (55)
T PF01826_consen 34 GCFCPPGYVRNDN-GRCVPPSEC 55 (55)
T ss_dssp EEEETTTEEEETT-SEEEEGGGC
T ss_pred cCCCCCCeeEcCC-CCEEcHHHC
Confidence 3999999997765 468766554
No 59
>smart00051 DSL delta serrate ligand.
Probab=49.11 E-value=21 Score=23.12 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=21.2
Q ss_pred ccCCCCeeCCCccccccccCCCC-CCCCCeeeeCCCCceEeCCCCce
Q psy11798 5 MSVTGYRLRVETCEDINECLELS-NQCAFRCHNVPGSFRCICPYGYA 50 (245)
Q Consensus 5 ~C~~G~~~~g~~C~dideC~~~p-~~c~~~C~n~~gsy~C~C~~Gy~ 50 (245)
.|.++|. |..|. ..|.... ..-+.+|.. . =.+.|.+||+
T Consensus 20 ~C~~~~y--G~~C~--~~C~~~~d~~~~~~Cd~-~--G~~~C~~Gw~ 59 (63)
T smart00051 20 TCDENYY--GEGCN--KFCRPRDDFFGHYTCDE-N--GNKGCLEGWM 59 (63)
T ss_pred eCCCCCc--CCccC--CEeCcCccccCCccCCc-C--CCEecCCCCc
Confidence 5778888 77775 2243211 112445522 1 2467889998
No 60
>KOG1215|consensus
Probab=45.68 E-value=33 Score=34.25 Aligned_cols=52 Identities=33% Similarity=0.611 Sum_probs=38.5
Q ss_pred CccccCCCCee--CCCccccccccCCCCCCCCCeee-eCCCCceEeCCCCceeCCCC
Q psy11798 2 STTMSVTGYRL--RVETCEDINECLELSNQCAFRCH-NVPGSFRCICPYGYALAPDG 55 (245)
Q Consensus 2 ~~C~C~~G~~~--~g~~C~dideC~~~p~~c~~~C~-n~~gsy~C~C~~Gy~~~~~g 55 (245)
..|.|..++.. .+.. +.+.|...+..|.+.|. +.++.|.|.|..||.+..++
T Consensus 346 ~~~~~~~~~~~~~~~~~--~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~ 400 (877)
T KOG1215|consen 346 PRCDCMGAKVLPLGART--DSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK 400 (877)
T ss_pred CcccCCccceecccccc--cCCcccccCCccceeccCCCCCceeEecCCCcEeccCC
Confidence 46778888776 2322 33455666778888998 56899999999999987766
No 61
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=30.25 E-value=47 Score=23.77 Aligned_cols=30 Identities=30% Similarity=0.799 Sum_probs=20.6
Q ss_pred ccccccCCCCCC-CCeEeecCCcceecCCCCce
Q psy11798 61 INECKENEGICE-DGKCINIAGGVTCECPEGFM 92 (245)
Q Consensus 61 ~~eC~~~~~~C~-~~~C~~~~g~~~C~C~~g~~ 92 (245)
.+.|.. .+.|+ .+.|. ......|.|.+||.
T Consensus 77 ~d~Cd~-y~~CG~~g~C~-~~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 77 KDQCDV-YGFCGPNGICN-SNNSPKCSCLPGFE 107 (110)
T ss_pred ccCCCC-ccccCCccEeC-CCCCCceECCCCcC
Confidence 356654 24588 68994 34556799999994
No 62
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=29.85 E-value=35 Score=24.55 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=19.2
Q ss_pred cccCCCCCCC--CCeeeeCC-----CCceEeCCCCce
Q psy11798 21 NECLELSNQC--AFRCHNVP-----GSFRCICPYGYA 50 (245)
Q Consensus 21 deC~~~p~~c--~~~C~n~~-----gsy~C~C~~Gy~ 50 (245)
++|......| ++.|++.. .=|.|.|.+...
T Consensus 6 ~aC~~~Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~ 42 (103)
T PF12955_consen 6 DACENATNNCSGHGSCVKKYGSGGGDCFACKCKPTVV 42 (103)
T ss_pred HHHHHhccCCCCCceEeeccCCCccceEEEEeecccc
Confidence 3444433344 78898873 358999988654
No 63
>KOG0196|consensus
Probab=26.63 E-value=1.1e+02 Score=30.45 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=31.2
Q ss_pred eecCCCCceeCCCCCceeecCcccccCCCccc---CccCCc-cCCCCCceEecCCCc
Q psy11798 84 TCECPEGFMLSPNGMKCIDVRQDVCYDSYQEG---TCTLLR-KQPITVKECCCSMGQ 136 (245)
Q Consensus 84 ~C~C~~g~~l~~~g~~C~~~~~~~C~~~~~~~---~C~~~~-~~~~~~~~C~C~~G~ 136 (245)
.|.|.+||.....+..|+.-..+.-....+.. .|-... ....+.-.|.|..||
T Consensus 260 ~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~C~~gy 316 (996)
T KOG0196|consen 260 GCVCKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPNSHSSSEGATSCTCENGY 316 (996)
T ss_pred ceeecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccccCCc
Confidence 68899999766566777532111011111122 344444 557788899999998
No 64
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=25.71 E-value=20 Score=28.70 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=13.2
Q ss_pred HhHhhhheeeeeeeccccc
Q psy11798 226 ARLFVLASLFMQQTETDKQ 244 (245)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ 244 (245)
|.|+..+-.++||+++++|
T Consensus 165 AlLLL~lv~~lQrRR~~~~ 183 (183)
T PF11874_consen 165 ALLLLGLVAWLQRRRRRKQ 183 (183)
T ss_pred HHHHHHHHHHHhhhhccCC
Confidence 3455555667888888887
No 65
>KOG3514|consensus
Probab=22.75 E-value=65 Score=32.86 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=23.9
Q ss_pred cccCccCCc--cCCCCCceEecC-CCccCCCCCc
Q psy11798 113 QEGTCTLLR--KQPITVKECCCS-MGQAWGRYCL 143 (245)
Q Consensus 113 ~~~~C~~~~--~~~~~~~~C~C~-~G~~~G~~C~ 143 (245)
.+++|.+++ ...-++|.|.|. .||. |+.|+
T Consensus 627 ~~nPC~N~g~C~egwNrfiCDCs~T~~~-G~~Ce 659 (1591)
T KOG3514|consen 627 ESNPCQNGGKCSEGWNRFICDCSGTGFE-GRTCE 659 (1591)
T ss_pred CCCcccCCCCccccccccccccccCccc-Ccccc
Confidence 567888877 556678999998 5666 99997
No 66
>KOG3516|consensus
Probab=21.06 E-value=80 Score=32.50 Aligned_cols=35 Identities=20% Similarity=0.508 Sum_probs=28.1
Q ss_pred cccCCCCCCCCCeeeeCCCCceEeCCC-CceeCCCCCeeE
Q psy11798 21 NECLELSNQCAFRCHNVPGSFRCICPY-GYALAPDGRHCI 59 (245)
Q Consensus 21 deC~~~p~~c~~~C~n~~gsy~C~C~~-Gy~~~~~g~~C~ 59 (245)
.-|.+.+|.+++.|+....+|.|.|.. .|. |..|.
T Consensus 956 GhCss~~C~NGG~Cvery~gytCDCs~Tay~----Gp~Cs 991 (1306)
T KOG3516|consen 956 GHCSSYPCLNGGHCVERYDGYTCDCSRTAYD----GPFCS 991 (1306)
T ss_pred cccccccccCCCEEEEecCceeeccccCcCC----CCccc
Confidence 447777888899999999999999964 555 77774
No 67
>KOG0196|consensus
Probab=20.19 E-value=94 Score=30.87 Aligned_cols=49 Identities=27% Similarity=0.790 Sum_probs=28.7
Q ss_pred eEeCCCCceeCCCCCeeEecc--ccccC--CCC---CC-CCeEeecCCcceecCCCCc
Q psy11798 42 RCICPYGYALAPDGRHCIDIN--ECKEN--EGI---CE-DGKCINIAGGVTCECPEGF 91 (245)
Q Consensus 42 ~C~C~~Gy~~~~~g~~C~~~~--eC~~~--~~~---C~-~~~C~~~~g~~~C~C~~g~ 91 (245)
.|.|.+||+-...+..|+.-. .-... ... |. + .-....++..|.|..||
T Consensus 260 ~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~-S~s~~ega~~C~C~~gy 316 (996)
T KOG0196|consen 260 GCVCKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPN-SHSSSEGATSCTCENGY 316 (996)
T ss_pred ceeecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCC-CCCCCCCCCcccccCCc
Confidence 699999998765677786310 00000 111 22 2 12345677889999988
Done!