RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11798
(245 letters)
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 99.7 bits (249), Expect = 2e-27
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 19 DINECLELSNQCA-FRCHNVPGSFRCICPYGYAL-APDGRHCIDINECKENEGICEDGKC 76
DI+EC + C +C N PG F C C GY ++C+DI+EC+ + +C G C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 77 INIAGGVTCECPEGFMLSPNGMKCI 101
N G CECP G LSPN CI
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISACI 86
Score = 64.2 bits (157), Expect = 8e-14
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 8 TGYRLRVE---TCEDINECLELSNQCAF-RCHNVPGSFRCICPYGYALAPDGRHCI 59
GY C DI+EC C CHN GS+RC CP G+ L+P+ CI
Sbjct: 31 EGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 99.7 bits (249), Expect = 2e-26
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 8 TGYRL-RVETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKE 66
G + + C + + + + C G+ P DI+EC+E
Sbjct: 68 IGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQE 127
Query: 67 NEGICEDGKCINIAGGVTCECPEGFMLSPNGMKC 100
G+C+ GKCIN G C CP G+ L+ + C
Sbjct: 128 LPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 84.7 bits (210), Expect = 9e-21
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 19 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCIN 78
D+NECL+ + + C N PGS+ C CP + L P C+D D +
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNC----YLDIRPRG 57
Query: 79 IAGGVTCECPEGFMLSPNGMKCID 102
G C G +S C
Sbjct: 58 DNGDTACSNEIGVGVSKASCCCSL 81
Score = 80.1 bits (198), Expect = 5e-19
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 5/88 (5%)
Query: 16 TCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGK 75
C D + R G C G ++ C + +
Sbjct: 40 GCVDTRSG---NCYLDIRPRGDNGDTACSNEIGVGVSKASCCC-SLGKAWGTPCEMC-PA 94
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCIDV 103
+ C EGF +P + D+
Sbjct: 95 VNTSEYKILCPGGEGFRPNPITVILEDI 122
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 95.0 bits (237), Expect = 2e-25
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 18 EDINECLELSNQCAF-RCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKC 76
+D++EC + C C N+PG F C CP GY + C DI+EC EN +C C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSEN--MCA-QLC 57
Query: 77 INIAGGVTCEC--PEGFMLSPNGMKCIDV 103
+N GG TC C +GF L+ + C V
Sbjct: 58 VNYPGGYTCYCDGKKGFKLAQDQKSCEVV 86
Score = 68.1 bits (167), Expect = 3e-15
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 8 TGYRLRVE--TCEDINECLELSNQCAFRCHNVPGSFRCIC--PYGYALAPDGRHCIDIN 62
GYR ++ +CEDI+EC E N CA C N PG + C C G+ LA D + C ++
Sbjct: 31 EGYRYNLKSKSCEDIDECSE--NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVVS 87
Score = 61.5 bits (150), Expect = 7e-13
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 60 DINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCT 118
D++EC IC C NI G CECPEG+ + C D+ D C ++ C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDI--DECSENMCAQLCV 58
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 95.5 bits (238), Expect = 2e-25
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 15 ETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDG 74
+ NECL+ + C++ C+++ + C+CP G+ L C DI+EC ++ C
Sbjct: 24 QGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR-RCEDIDEC-QDPDTC-SQ 80
Query: 75 KCINIAGGVTCECPEGFMLSPNGMKC 100
C+N+ GG C+C EGF L P+ C
Sbjct: 81 LCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 71.2 bits (175), Expect = 3e-16
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 33 RCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIAGGVTCECPEGFM 92
H+ + + + NEC +N G C C ++ G C CP+GF
Sbjct: 5 HHHHPMSDYDIPTTENL----YFQGAMGTNECLDNNGGCS-YVCNDLKIGYECLCPDGFQ 59
Query: 93 LSPNGMKCIDV 103
L +C D+
Sbjct: 60 LVAQR-RCEDI 69
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 93.8 bits (234), Expect = 4e-25
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 16 TCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGK 75
+ D++EC E +C N GS+RC CP+GY L G C+D +EC C +G
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNP-CGNGT 57
Query: 76 CINIAGGVTCECPEGFMLSPNG 97
C N+ GG C C EGF P
Sbjct: 58 CKNVIGGFECTCEEGFEPGPMM 79
Score = 56.4 bits (137), Expect = 5e-11
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 8 TGYRLRVETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 58
GY L C D +EC + C NV G F C C G+ C
Sbjct: 32 FGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPG-PMMTC 81
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 90.6 bits (225), Expect = 4e-23
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 14/106 (13%)
Query: 15 ETCEDINECLELSNQC---AFRCHNVPGSFRCICPYGYALA--------PDGRHCIDINE 63
ETC+DINEC LS C N GS+ C+C GY C D++E
Sbjct: 39 ETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDE 98
Query: 64 CKENEGIC-EDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVC 108
C + C C N G +C C G+ VC
Sbjct: 99 CSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKD--TVC 142
Score = 67.9 bits (166), Expect = 1e-14
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 19 DINECLELSNQCAFRCHNVPGSFRCICPYGY-----ALAPDGRHCIDINECKENEGIC-- 71
D C + C + + + C C G+ + C DINEC +
Sbjct: 1 DSRGC---ARWCP-QDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 72 EDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYD 110
+ C N G C C G+ + ++ C D
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD 95
Score = 63.7 bits (155), Expect = 4e-13
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 16 TCEDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHCIDINECK 65
TC+D++EC +QC + C N GS+ C C G+ + C+
Sbjct: 92 TCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 86.6 bits (215), Expect = 1e-21
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 17 CEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKC 76
++C IC GY+ G C DI+EC+ G+C++G C
Sbjct: 65 ATLKSQCCSSLGAAW-GSPCTLCQVDPICGKGYSRI-KGTQCEDIDECEVFPGVCKNGLC 122
Query: 77 INIAGGVTCECPEGFMLSPNGMKCI 101
+N G C+CP G L G C+
Sbjct: 123 VNTRGSFKCQCPSGMTLDATGRICL 147
Score = 70.8 bits (174), Expect = 1e-15
Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 24/108 (22%)
Query: 18 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINE-----------CKE 66
DI+EC S C N PGSF C C L P CI+ + C+
Sbjct: 2 ADIDECES-SPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 67 NEGICEDGK-----------CINIAGGVTCECPEGFMLSPNGMKCIDV 103
N V C +G+ G +C D+
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRI-KGTQCEDI 107
Score = 65.1 bits (159), Expect = 2e-13
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 60 DINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTL 119
DI+EC+ + C +G C N G CEC L P CI+ + C+ + +G C +
Sbjct: 3 DIDECESS--PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 120 LRKQPITVKECCCSMGQAWGRYCLPCP 146
+CC S+G AWG C C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQ 87
Score = 60.4 bits (147), Expect = 6e-12
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 16 TCEDINECLELSNQCA-FRCHNVPGSFRCICPYGYALAPDGRHCI 59
CEDI+EC C C N GSF+C CP G L GR C+
Sbjct: 103 QCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 82.5 bits (203), Expect = 2e-18
Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 2/128 (1%)
Query: 19 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCIN 78
C + CA +C + G+ +C C GY L DGR C D+NEC E G C C N
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEE-GYC-SQGCTN 59
Query: 79 IAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMGQAW 138
G C C G+ L P+ C + + + ++ A
Sbjct: 60 SEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAI 119
Query: 139 GRYCLPCP 146
Sbjct: 120 ALDFHHRR 127
Score = 49.0 bits (116), Expect = 4e-07
Identities = 31/116 (26%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 8 TGYRLRV--ETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECK 65
TGYRL TC+D+NEC E C+ C N G+F+C C GY L PD R C +
Sbjct: 30 TGYRLTEDGRTCQDVNECAE-EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEP 88
Query: 66 ENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLR 121
+ + I E N + + +LR
Sbjct: 89 VL--LFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILR 142
Score = 37.1 bits (85), Expect = 0.003
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 30 CAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
C C ++ C CP G+ + C
Sbjct: 357 CTHLCLPSGQNYTCACPTGFRKI-NSHACA 385
Score = 34.7 bits (79), Expect = 0.021
Identities = 14/53 (26%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 46 PYGYALAPDGRHCIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGM 98
P R N C +N G C C+ TC CP GF +
Sbjct: 332 PMDIHTLHPQRQPAGKNRCGDNNGGCTHL-CLPSGQNYTCACPTGFRKINSHA 383
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 71.6 bits (176), Expect = 3e-16
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 8 TGYRLR---VETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 64
G+ C+ C C C CP GY L DG C DI+EC
Sbjct: 30 EGFAPIPHEPHRCQMFCNQ----TACPADCDP-NTQASCECPEGYILD-DGFICTDIDEC 83
Query: 65 KENEGICEDGKCINIAGGVTCECPEGFMLSP-NGMKC 100
EN G C G C N+ G C C L+ G C
Sbjct: 84 -ENGGFCS-GVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 68.2 bits (167), Expect = 6e-15
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 18 EDINECLELSNQCAFRCHNV-PGSFRCICPYGYALAPDGRH-CIDINECKENEGICEDGK 75
E ++ C C ++C + S+ C+C G+A P H C C
Sbjct: 2 EPVDPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC---- 55
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCIDV 103
+ +CECPEG++L +G C D+
Sbjct: 56 --DPNTQASCECPEGYILD-DGFICTDI 80
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 72.2 bits (176), Expect = 7e-15
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ C C+N+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDP-DTC-SQLCVNLE 57
Query: 81 GGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMGQAWGR 140
GG C+C EGF L P+ C V + ++
Sbjct: 58 GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVAL 117
Query: 141 YCLPCPS 147
+
Sbjct: 118 DTEVASN 124
Score = 55.6 bits (133), Expect = 3e-09
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 9 GYRLRVE-TCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKEN 67
G++L + CEDI+EC + + C+ C N+ G ++C C G+ L P + C +
Sbjct: 28 GFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 86
Query: 68 EGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCY 109
+ + L +V + Y
Sbjct: 87 FFTNRHEVR-KMTLDRSEYTSLIPNLRNVVALDTEVASNRIY 127
Score = 35.2 bits (80), Expect = 0.014
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 46 PYGYALAPDGRHCIDINECKENE---GICED-----GKCINIAGGVTCECPEGFMLSPNG 97
P L + +N C+ G C+ + + TC CP+G +L+ +
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 393
Query: 98 MKCI 101
C+
Sbjct: 394 RSCL 397
Score = 34.4 bits (78), Expect = 0.029
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 17 CEDINECLELSNQ---CAFRCHNVP------GSFRCICPYGYALAPDGRHCI 59
+N C + C + C P F C CP G LA D R C+
Sbjct: 346 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 66.1 bits (162), Expect = 5e-14
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 16 TCEDINECLELSNQCA--FRCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENEGICE 72
+ +D++EC +N C +C N GSF C C GY G C ID+NEC N C+
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSN--PCQ 54
Query: 73 -DGKCINIAGGVTCECPEGF 91
D C++ G C C G+
Sbjct: 55 NDATCLDQIGEFQCICMPGY 74
Score = 43.0 bits (102), Expect = 9e-06
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 15 ETCE-DINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENEGI 70
CE + +EC S+ C RC + F+C CP G+ G C +D++ + + +
Sbjct: 77 VHCEVNTDECA--SSPCLHNGRCLDKINEFQCECPTGFT----GHLCQVDLHHILDAQKM 130
Query: 71 CEDGK 75
+ +
Sbjct: 131 VWNHR 135
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 65.1 bits (159), Expect = 8e-14
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 16 TCEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC---IDINECKENEGI 70
C + ++ C C + GSF C C G+ +GR C + C + G
Sbjct: 8 QCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW----EGRFCQREVSFLNCSLDNGG 63
Query: 71 CEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVC 108
C C+ G C C G+ L + ++C + C
Sbjct: 64 CT-HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPC 100
Score = 50.1 bits (120), Expect = 2e-08
Identities = 12/50 (24%), Positives = 15/50 (30%)
Query: 15 ETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 64
+ C + C C G RC C GY L D C +
Sbjct: 49 QREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
Score = 35.1 bits (81), Expect = 0.004
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 57 HCIDINECKEN-------EGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCY 109
+D ++C C G CI+ G +C+C G+ + +
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG-RFCQREVSFLNCSLD 60
Query: 110 DSYQEGTCT 118
+ C
Sbjct: 61 NGGCTHYCL 69
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 69.3 bits (169), Expect = 8e-14
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 19 DINECLELSNQCA--FRCHNVP-GSFRCI-CPYGYALAPDGRHCIDINECKENEGICEDG 74
D + CL SN C +C + P GS+ C CP G+ +G HC D++EC IC
Sbjct: 2 DPDGCL--SNPCFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDECALVPDICFST 57
Query: 75 ----KCINIAGGVTCE-CPEGF---MLSPNGMKCIDVRQDVCYD 110
+C+N G C CP + G++ + VC
Sbjct: 58 SKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEP 101
Score = 65.0 bits (158), Expect = 2e-12
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 25/119 (21%)
Query: 16 TCEDINECLELSNQC-----AFRCHNVPGSFRCI-CPYGY-----------ALAPDGRHC 58
CED++EC + + C RC N F C+ CP Y A + + C
Sbjct: 40 HCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVC 99
Query: 59 IDINECKENEGIC-EDGKCINIA----GGVTCECPEGFMLSPNGMKC-IDVRQDVCYDS 111
N CK+ C + +CI + CEC G+ + +G+ C D D +
Sbjct: 100 EPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGY--AGDGLICGEDSDLDGWPNL 156
>1apj_A Fibrillin; microfibril, TB module, marfan syndrome, connective
tissue, novel fold, extracellular matrix; NMR {Homo
sapiens} SCOP: g.23.1.1
Length = 74
Score = 61.8 bits (150), Expect = 5e-13
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 100 CIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSM-GQAWGRYCLPCPSPNSGE 152
D+R CY ++ G C+ + + + +ECCC++ G+ WG C CP+
Sbjct: 2 AQDLRMSYCYAKFEGGKCSSPKSRNHSKQECCCALKGEGWGDPCELCPTEPDEA 55
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 64.8 bits (158), Expect = 5e-13
Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 17 CEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENEGICED 73
+D ++C ++ C +C + G + C C G+ G++C + + + D
Sbjct: 39 YKDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKLCSLDNGDCD 92
Query: 74 GKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCS 133
C V C C G+ L+ NG CI C ++ ++ +V + S
Sbjct: 93 QFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC---GKQTLE----RRKRSVAQATSS 145
Query: 134 MGQAWGRYC 142
G+A
Sbjct: 146 SGEAPDSIT 154
Score = 47.4 bits (113), Expect = 7e-07
Identities = 19/90 (21%), Positives = 21/90 (23%), Gaps = 8/90 (8%)
Query: 16 TCE-DINECLELSN-QCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICE- 72
CE + L N C CH S C C GY LA +G C
Sbjct: 75 NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG---KACIPTGPYP--CGK 129
Query: 73 DGKCINIAGGVTCECPEGFMLSPNGMKCID 102
G K D
Sbjct: 130 QTLERRKRSVAQATSSSGEAPDSITWKPYD 159
Score = 38.6 bits (90), Expect = 7e-04
Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 15/100 (15%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
EC+E C + D ++C+ + + GKC +
Sbjct: 10 RECME--ETC---SYEEAREVFEDSDKTNE---FWNKYKDGDQCETSPCQNQ-GKCKDGL 60
Query: 81 GGVTCECPEGFMLSPNGMKCIDVRQDVCYDS--YQEGTCT 118
G TC C EGF G C + +C + C
Sbjct: 61 GEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCH 96
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 59.7 bits (143), Expect = 3e-11
Identities = 24/101 (23%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
Query: 8 TGYRLRVETCEDINEC---LELSNQCAFRCHNVPGSFRCICPYGYALAP-DGRHCIDINE 63
GY L +TC S +C + S C C G P D C E
Sbjct: 80 EGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGE 139
Query: 64 CKENEGIC-EDGKCINIAGGVTCECPEGFMLSPNGMKCIDV 103
++ C N+ G C+C EGF C+
Sbjct: 140 TACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGP 180
Score = 52.3 bits (124), Expect = 1e-08
Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 12/110 (10%)
Query: 34 CHNVPGSFRCICPYGYALAPDGRHCIDINECK--------ENEGICEDGKCINIAGGVTC 85
+ F C+C G C + NEC G C + C
Sbjct: 18 LVQMSNHFXCMCNEGLVHL-SENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXC 76
Query: 86 ECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMG 135
C EG+ L + + C +S G C + I C C++G
Sbjct: 77 GCIEGYTLXEDTCVLDVCQYXNCGES---GECIVEYLSEIQSAGCSCAIG 123
Score = 49.3 bits (116), Expect = 2e-07
Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 10/104 (9%)
Query: 15 ETCEDINECL---------ELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECK 65
TCE+ NEC E + C C GY L D
Sbjct: 39 NTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXN 98
Query: 66 ENEGICEDGKCINIAGGVTCECPEGFMLSP-NGMKCIDVRQDVC 108
E + ++ C C G + +P + C + C
Sbjct: 99 CGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETAC 142
Score = 48.5 bits (114), Expect = 3e-07
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 17 CEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHCIDINECKEN 67
C E C NV G + C C G+ + C+ + +
Sbjct: 134 CTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHHHH 186
Score = 28.1 bits (61), Expect = 1.9
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 70 ICEDGKCINIAGGVTCECPEGFMLSPN 96
IC +G+ + ++ C C EG +
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLSE 38
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease;
NMR {Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 55.5 bits (134), Expect = 5e-11
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 18 EDINECLELSN--------QCAFRCHNVPGSFRCICPYGYALAPDGRHC 58
D++EC S QC CHN G + C C GY L D C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 41.3 bits (97), Expect = 9e-06
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 59 IDINECKENEGICEDGK-------CINIAGGVTCECPEGFMLSPNGMKC 100
+D++EC E+ C N GG C C G+ L + C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 58.1 bits (141), Expect = 5e-11
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 17 CEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENE---GI 70
D ++C S+ C C + S+ C C + GR+C ++ G
Sbjct: 44 YSDGDQCA--SSPCQNGGSCKDQLQSYICFCLPAFE----GRNCETHKDDQLICVNENGG 97
Query: 71 CEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVC 108
CE + +C C EG+ L +G+ C + C
Sbjct: 98 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 135
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 58.1 bits (141), Expect = 5e-11
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 17 CEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENEGICED 73
D ++C N C C + S+ C C G+ G++C +D +N G C+
Sbjct: 45 YVDGDQCE--PNPCLNGGLCKDDINSYECWCQVGFE----GKNCELDATCNIKN-GRCKQ 97
Query: 74 GKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVC 108
V C C G+ L+P+ C C
Sbjct: 98 FCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPC 132
Score = 36.9 bits (86), Expect = 0.002
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 34 CHNVPGSFRCICPYGYALAP--DGRHC-IDINECKENEGICEDGKCINIAGGVTCECPEG 90
C SF + +D ++C+ N G C + C C G
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPC-LNGGLCKDDINSYECWCQVG 76
Query: 91 F 91
F
Sbjct: 77 F 77
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 56.1 bits (136), Expect = 2e-10
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 17 CEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENEGICED 73
+D ++C ++ C +C + G + C C G+ G++C + + + D
Sbjct: 39 YKDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKLCSLDNGDCD 92
Query: 74 GKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVC 108
C V C C G+ L+ NG CI C
Sbjct: 93 QFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC 127
Score = 40.4 bits (95), Expect = 9e-05
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 21 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENEGICEDGKCINI 79
EC+E C + + D ++C+ + GKC +
Sbjct: 10 RECME--ETC---SYEEAREVFEDSDKTNE----FWNKYKDGDQCETSPC-QNQGKCKDG 59
Query: 80 AGGVTCECPEGF 91
G TC C EGF
Sbjct: 60 LGEYTCTCLEGF 71
Score = 38.4 bits (90), Expect = 4e-04
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 16 TCE-DINECLELSN-QCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKE----NEG 69
CE + L N C CH S C C GY LA +G +
Sbjct: 75 NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG---KACIPTGPYPCGKQT 131
Query: 70 IC 71
+
Sbjct: 132 LE 133
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 54.3 bits (131), Expect = 7e-09
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 19 DINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-IDINECKENEGICEDGK 75
+ C+ S C C + + C C GY +G +C + NEC
Sbjct: 4 GGSPCI--SQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHF 57
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQP 124
C+ TC C +G+ L + +C+ Q C E L+ P
Sbjct: 58 CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLP 106
Score = 27.0 bits (60), Expect = 6.1
Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 28/80 (35%)
Query: 54 DGRHCIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQ 113
G CI C + G C+D G TC C G Y+
Sbjct: 4 GGSPCIS-QPCL-HNGSCQDS-----IWGYTCTCSPG---------------------YE 35
Query: 114 EGTCTLLRKQPITVKECCCS 133
C L + + + C
Sbjct: 36 GSNCELAKNECHPERTDGCQ 55
>1ksq_A Latent transforming growth factor beta binding protein 1;
structure, LTBP-1, TGF-beta, TB domain, latency
associated propeptide, LAP; NMR {Homo sapiens} SCOP:
g.23.1.1
Length = 75
Score = 49.2 bits (117), Expect = 2e-08
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 96 NGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMGQAWGRYC--LPCPSPNSGE 152
+ + + +++ Y+ C + +T +ECCC+ G WG C PCP + E
Sbjct: 1 SADQPKEEKKECYYNLNDASLCDNVLAPNVTKQECCCTSGAGWGDNCEIFPCPVLGTAE 59
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted,
protease, hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 47.8 bits (114), Expect = 3e-08
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 30 CAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 64
C CH S C C GY LA +G+ CI
Sbjct: 11 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 39.3 bits (92), Expect = 5e-05
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 62 NECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVC 108
C + G C+ C V C C G+ L+ NG CI C
Sbjct: 2 KLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC 47
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 50.6 bits (120), Expect = 1e-07
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 20 INECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINI 79
+NEC E C+ C N G+F+C C GY L PD R C + +
Sbjct: 1 VNECAE-EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVL 59
Query: 80 AGGVTCECPEGFMLSPNGMKCIDVRQDVCYDS 111
+ + + R+++ + S
Sbjct: 60 PHRSEYTLLLNNLENAIAL-DFHHRRELVFWS 90
Score = 46.4 bits (109), Expect = 3e-06
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 61 INECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTC 117
+NEC E G C C N G C C G+ L P+ C + +
Sbjct: 1 VNECAEE-GYC-SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI 55
Score = 36.0 bits (82), Expect = 0.009
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 17 CEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
N C + + C C ++ C CP G+ + C
Sbjct: 301 PAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHACA 342
Score = 34.8 bits (79), Expect = 0.020
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 56 RHCIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDV 103
R N C +N G C C+ TC CP GF + ++V
Sbjct: 299 RQPAGKNRCGDNNGGCTHL-CLPSGQNYTCACPTGFRKINSHACALEV 345
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 45.0 bits (107), Expect = 3e-07
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 30 CAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 64
C C RC C +GY L D + C+
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 38.1 bits (89), Expect = 1e-04
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 64 CKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVC 108
C + G C+ C V C C G++L + C+ + C
Sbjct: 1 CSLDNGGCD-QFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPC 44
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 47.5 bits (113), Expect = 4e-07
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 2 STTMSVTGYRLRVETCEDINECLELSN-QCAFRCHNVPGSFRCICPYGYALAPDGRHCID 60
S TG+ DINEC + + C+ C+N G + C CP Y L D ++C
Sbjct: 100 SNEERFTGFAAYYVAT-DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 35.6 bits (82), Expect = 0.006
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 57 HCIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCID 102
DINEC + + C N GG C CP + L + C
Sbjct: 113 VATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 44.8 bits (106), Expect = 1e-06
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 12/71 (16%)
Query: 27 SNQCAFR-CHNVPGSFRCICPYGYALAPDGRHCIDINECKE----NEGICEDGKCINIAG 81
+Q R C C G A H + + C E N G C+ +
Sbjct: 17 QHQSWLRPVLRSNRVEYCWCNSGRA----QCHSVPVKSCSEPRCFNGGTCQQALYFS--- 69
Query: 82 GVTCECPEGFM 92
C+CPEGF
Sbjct: 70 DFVCQCPEGFA 80
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 46.7 bits (110), Expect = 3e-06
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 28 NQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 59
C+ C P RC CP G+ L D + CI
Sbjct: 586 GGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 44.8 bits (105), Expect = 1e-05
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 42 RCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCI 101
+ G R +EN G C C+ G+ C CP GF L + CI
Sbjct: 560 QLPDLMGLKATNVHRVIGSNPCAEEN-GGCSHL-CLYRPQGLRCACPIGFELISDMKTCI 617
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted
catalysis, hydrolase; 1.69A {Homo sapiens} SCOP:
g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 42.9 bits (101), Expect = 3e-06
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 17 CEDINECLELSNQCAFRCHNVPGS-FRCICPYGYALAPDGRHCIDINEC 64
+D C+ + C C + G+ C C GY+L DG C E
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
Score = 41.3 bits (97), Expect = 1e-05
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 57 HCIDINECKENEGICEDGKCINIAGG-VTCECPEGFMLSPNGMKCIDVRQDVC 108
H D C G CE C + G +C C EG+ L +G+ C + C
Sbjct: 1 HKDDQLICVNENGGCEQ-YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 52
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 45.8 bits (108), Expect = 4e-06
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 23 CLELSNQCAFRCHNVPGS--FRCICPYGYALAPDGRHCIDINEC 64
C + C+ C P ++C CP G L +G+ C D N
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313
Score = 35.4 bits (81), Expect = 0.012
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 46 PYGYALAPDGRHCIDINECKENEGICEDGKCINIA--GGVTCECPEGFMLSPNGMKCIDV 103
+A + + +N G C C+ C CP G L NG C D
Sbjct: 253 MDIHAFSQQRQPNATNPCGIDN-GGCSH-LCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 44.3 bits (105), Expect = 4e-06
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 17 CEDINECLELSNQCA---------FRCHNVPGSFRCICPYGYALAPDGRHC-IDINECKE 66
C N C + + C CP G+ G HC +INEC+
Sbjct: 49 PTSAGPCT--PNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFN----GIHCQHNINECEV 102
Query: 67 NEGICE-DGKCINIAGGVTCECPEGFM 92
C+ G C ++ +CECP FM
Sbjct: 103 EP--CKNGGICTDLVANYSCECPGEFM 127
Score = 40.1 bits (94), Expect = 1e-04
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 15 ETCE-DINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-IDINECKEN 67
C+ +INEC C C ++ ++ C CP + GR+C +
Sbjct: 91 IHCQHNINECE--VEPCKNGGICTDLVANYSCECPGEFM----GRNCQYKGGGHHHH 141
Score = 36.2 bits (84), Expect = 0.003
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 25/79 (31%)
Query: 34 CHN--VPGSFRCICPYGYALAPDGRHC-IDINECKE----------------NEGICE-- 72
C GSF C CP G+ +C + + N G CE
Sbjct: 14 CLPGLADGSFSCECPDGFT----DPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEIS 69
Query: 73 DGKCINIAGGVTCECPEGF 91
+ + G C+CP GF
Sbjct: 70 EAYRGDTFIGYVCKCPRGF 88
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 42.5 bits (99), Expect = 8e-05
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 1 MSTTMSVTGYRLRVETCEDINECLELSNQCAFRCHNVP-GSFRCICPYGYALAPDGRHCI 59
++ + + + C + + C+ C G+ RC CP L D C
Sbjct: 560 IAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCG 619
Query: 60 DINECKEN 67
+
Sbjct: 620 GTKHHHHH 627
Score = 39.8 bits (92), Expect = 5e-04
Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 27 SNQCAFRCHNVPGSFRCICPYGY-----ALAPDGRHCIDINECKENEGICEDGKCINIAG 81
S + R + G R I L NEC + G C G
Sbjct: 226 SRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVG 285
Query: 82 GVTCECPEGFMLSPNGMKCIDVRQDVCYDSY 112
G C CP + L+ + C + +
Sbjct: 286 GFVCGCPAHYSLNADNRTCSAPTTFLLFSQK 316
Score = 36.7 bits (84), Expect = 0.005
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 49 YALAPDGRHCIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQ 105
+A+ + C ++ G C + G C CP +L + + C +
Sbjct: 567 HAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKH 623
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 41.7 bits (97), Expect = 1e-04
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 18 EDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDG- 74
C +QC+ C + F C C Y +GR C+ + G +
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTG--NGRQCVAEGSPQRVNGKVKGRI 60
Query: 75 KCINIAGGVTCEC 87
+ V E
Sbjct: 61 FVGSSQVPVVFEN 73
Score = 36.7 bits (84), Expect = 0.004
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 60 DINECKENEGIC-EDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCT 118
C N C +C + A G C C + + NG +C+ + +G
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVAEGSPQRVNGKVKGRIF 61
Query: 119 LLRKQPITVKECCCSMG 135
+ Q V E
Sbjct: 62 VGSSQVPVVFENTDLHS 78
Score = 29.7 bits (66), Expect = 0.87
Identities = 15/98 (15%), Positives = 22/98 (22%), Gaps = 7/98 (7%)
Query: 8 TGYRLRVETCEDINECLELSNQCA----FRCHNVPGSFRCICPYGYALAPDGRHCIDINE 63
Y C ++ + VP F + Y + GR I+
Sbjct: 34 ANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAIST 93
Query: 64 CKENEGICED-GKCINIAGGVTCECPEGFMLSPNGMKC 100
E G I G + NG
Sbjct: 94 IPETVGYSLLPLAPIGGIIGWMFAVEQDG--FKNGFSI 129
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 39.1 bits (91), Expect = 3e-04
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 16 TCEDINECLELSNQ---CAFRCHNVPGSFRCICPYGYALAPDGRHCIDIN 62
EDI+EC + C CHN G F C C GY L + R C + +
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 34.5 bits (79), Expect = 0.011
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 58 CIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCID 102
ID + E D C N GG C C G++L N C +
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 38.1 bits (88), Expect = 0.002
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 20 INECLELSN---QCAFRCHNVP------GSFRCICPYGYALAPDGRHCI 59
+N C + C + C P F C CP G LA D R C+
Sbjct: 267 VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
Score = 36.2 bits (83), Expect = 0.006
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 46 PYGYALAPDGRHCIDINECKE---NEGICED-----GKCINIAGGVTCECPEGFMLSPNG 97
P L + +N C+ + G C+ + + TC CP+G +L+ +
Sbjct: 252 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 311
Query: 98 MKCI 101
C+
Sbjct: 312 RSCL 315
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 38.2 bits (88), Expect = 0.002
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 15 ETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDG 74
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC++ +
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPD--TCSQ 345
Query: 75 KCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTC 117
C+N+ GG C+C EGF L P+ C V
Sbjct: 346 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV 388
Score = 34.8 bits (79), Expect = 0.021
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 31 AFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 64
A + + F C CP G LA D R C+ E
Sbjct: 663 APQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 696
Score = 33.6 bits (76), Expect = 0.058
Identities = 31/156 (19%), Positives = 48/156 (30%), Gaps = 15/156 (9%)
Query: 17 CEDINECLELSNQCAFRCHN---VPGSFRCICPYGYALAPD-GRHCIDINECKENEGICE 72
C ++ C F+CH+ + C D NEC +N G C
Sbjct: 249 CVNVTLC---EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 305
Query: 73 DGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCC 132
C ++ G C CP+GF L +C D + TC+ L +C C
Sbjct: 306 -HVCNDLKIGYECLCPDGFQL-VAQRRCED-----IDECQDPDTCSQLCVNLEGGYKCQC 358
Query: 133 SMGQAWGRYCLPCPSPNSGEPATFWSHYPKGFFFVL 168
G F+++ + L
Sbjct: 359 EEGF-QLDPHTKACKAVGSIAYLFFTNRHEVRKMTL 393
Score = 31.7 bits (71), Expect = 0.23
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 15 ETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDG 74
D + C C + S+RC D +C + C+ +E C DG
Sbjct: 168 VFQGDSSPCSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC-AVATCRPDEFQCSDG 225
Query: 75 KCI 77
CI
Sbjct: 226 NCI 228
Score = 30.2 bits (67), Expect = 0.79
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 63 ECKENEGICED-----GKCINIAGGVTCECPEGFMLSPNGMKCID 102
+ G C+ + + TC CP+G +L+ + C+
Sbjct: 648 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 692
Score = 27.1 bits (59), Expect = 6.8
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 16 TCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGK 75
C D +C+ C + GS CP + + C C++
Sbjct: 94 RCHD-GKCISRQFVCDSDRDCLDGSDEASCPVLT--CGPASFQCNSSTCIPQLWACDNDP 150
Query: 76 -CINIAGGVTCECPEGFMLSPNGMKC 100
C + + C ++ + C
Sbjct: 151 DCEDGSDEWPQRCRGLYVFQGDSSPC 176
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 36.2 bits (84), Expect = 0.004
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 39 GSFRCICPYGYALAPDGRHC-IDINECKENEGICEDGKCINIA-GGVTCECPEGFM 92
++C+C + G+ C D+N C ++ G C N C CPEG+
Sbjct: 112 EPWQCLCETNWG----GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYS 163
Score = 28.5 bits (64), Expect = 1.2
Identities = 14/80 (17%), Positives = 20/80 (25%), Gaps = 19/80 (23%)
Query: 15 ETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC---IDINECKENEGIC 71
C C + + G+ C G+ G C I C G C
Sbjct: 28 FGCN--KFCRPRDDFFGHYACDQNGN--KTCMEGWM----GPECNRAICRQGCSPKHGSC 79
Query: 72 EDGKCINIAGGVTCECPEGF 91
+ C C G+
Sbjct: 80 KL--------PGDCRCQYGW 91
Score = 26.6 bits (59), Expect = 6.0
Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 9/54 (16%)
Query: 39 GSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIAGGVTCECPEGFM 92
G C Y G C C+ + C C EG+M
Sbjct: 15 GRSAVTCDDYYY----GFGC--NKFCRPRDDFFGHYACD---QNGNKTCMEGWM 59
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 33.5 bits (77), Expect = 0.005
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 30 CAFRCHNVPGSFR-CICPYGYALAPDGRHCIDINEC 64
C C + G+ R C C GY+L DG C E
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
Score = 32.0 bits (73), Expect = 0.018
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 64 CKENEGICEDGKCINIAGG-VTCECPEGFMLSPNGMKCIDVRQDVC 108
C G CE C + G +C C EG+ L +G+ C + C
Sbjct: 2 CVNENGGCEQ-YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 46
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 33.6 bits (77), Expect = 0.005
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 30 CAFRCHNVPG-SFRCICPYGYALAPDGRHCIDINEC 64
C C N C C GY LA + + C
Sbjct: 9 CEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
Score = 32.4 bits (74), Expect = 0.014
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 64 CKENEGICEDGKCINIAGG-VTCECPEGFMLSPNGMKCIDVRQDVC 108
C G CE C N A V C C EG+ L+ N C C
Sbjct: 2 CNIKNGRCEQ-FCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPC 46
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 32.5 bits (75), Expect = 0.008
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 19 DINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC 58
D ++C SN C C + S+ C CP+G+ +G++C
Sbjct: 2 DGDQCE--SNPCLNGGSCKDDINSYECWCPFGF----EGKNC 37
Score = 30.9 bits (71), Expect = 0.026
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 59 IDINECK----ENEGICEDGKCINIAGGVTCECPEGF 91
+D ++C+ N G C+D C CP GF
Sbjct: 1 VDGDQCESNPCLNGGSCKDD-----INSYECWCPFGF 32
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 35.4 bits (82), Expect = 0.011
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 21 NECLELSN-QCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKC 76
NEC C C S+ C C GY L D + C+ ++C E
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 59
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 35.1 bits (80), Expect = 0.019
Identities = 20/147 (13%), Positives = 31/147 (21%), Gaps = 18/147 (12%)
Query: 21 NECLELSNQCAFRCHN----VPGSFRCICPYGYALAPDGRHC-IDINECKENEGICEDGK 75
+ C + +P + C C G+ G C +
Sbjct: 239 GRTCKERCSGQEGCKSYVFCLPDPYGCSCATGW----KGLQCNEACHPGFYGPDCKLRCS 294
Query: 76 CINIA---GGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCC 132
C N C C G+ G++C + + C
Sbjct: 295 CNNGEMCDRFQGCLCSPGWQ----GLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKA 350
Query: 133 S--MGQAWGRYCLPCPSPNSGEPATFW 157
S L P P F
Sbjct: 351 SGWPLPTNEEMTLVKPDGTVLHPKDFN 377
Score = 28.5 bits (63), Expect = 2.2
Identities = 20/107 (18%), Positives = 30/107 (28%), Gaps = 19/107 (17%)
Query: 22 ECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECK---------ENEGIC 71
EC L C + CICP G+ GR C + C
Sbjct: 197 ECNHLCTACMNNGVCHEDTGECICPPGFM----GRTCEKACELHTFGRTCKERCSGQEGC 252
Query: 72 EDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCT 118
+ C C G+ G++C + Y + C+
Sbjct: 253 KSYVFCLPDPY-GCSCATGWK----GLQCNEACHPGFYGPDCKLRCS 294
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 32.8 bits (74), Expect = 0.024
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 35 HNVPGSFRCICPYGYALAPDGRHCIDIN-ECKENEGIC-EDGKCINIAGG-VTCECPEG 90
+ G+ C G+ G C+ + C+EN G C + +C V C+C +
Sbjct: 26 RYLDGTEEWRCLLGF--KEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKE 82
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 33.9 bits (77), Expect = 0.041
Identities = 28/141 (19%), Positives = 42/141 (29%), Gaps = 29/141 (20%)
Query: 17 CEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECK-------ENE 68
+D E C+ R + G +C+C G++C D C
Sbjct: 482 QQDECSPREGQPVCSQRGECLCG--QCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGH 539
Query: 69 GICEDGKCINIAG--GVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPIT 126
G C G C+ + G C C C+ +C G C
Sbjct: 540 GQCSCGDCLCDSDWTGYYCNCTTRTD------TCMSSNGLLCSGR---GKCE-------- 582
Query: 127 VKECCCSMGQAWGRYCLPCPS 147
C C ++G C CP+
Sbjct: 583 CGSCVCIQPGSYGDTCEKCPT 603
Score = 28.5 bits (63), Expect = 2.5
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 58 CIDINECKENEGICEDGKCINIAG--GVTCECPEGFMLSPNGMKC 100
+ + C G E G C G G CEC E +C
Sbjct: 442 EPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDEC 486
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 34.0 bits (77), Expect = 0.042
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 33 RCHNVPGSFRCICPYGYALAPDGRHCIDINEC 64
+ + F C CP G LA D R C+ E
Sbjct: 683 QINPHSPKFTCACPDGMLLARDMRSCLTEAEA 714
Score = 31.7 bits (71), Expect = 0.25
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 41 FRCICPYGYALAPDGRHCIDINECKENEGICEDGKCIN 78
++ LA G + C+ NE C+DGKCI+
Sbjct: 3 WKLRWTVALLLAAAGTAVG--DRCERNEFQCQDGKCIS 38
Score = 30.2 bits (67), Expect = 0.68
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 63 ECKENEGICED-----GKCINIAGGVTCECPEGFMLSPNGMKCIDV 103
+ G C+ + + TC CP+G +L+ + C+
Sbjct: 666 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 711
Score = 29.4 bits (65), Expect = 1.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 16 TCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 64
CEDI+EC + + C+ C N+ G ++C C G+ L P + C +
Sbjct: 348 RCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 395
Score = 29.4 bits (65), Expect = 1.4
Identities = 22/145 (15%), Positives = 34/145 (23%), Gaps = 31/145 (21%)
Query: 15 ETCEDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICE 72
+ + C+ C C + + C Y D C E C
Sbjct: 149 SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSA------FEFHCL 202
Query: 73 DGKCINIA----------------GGVTCECPEGFMLSPNGMKCIDVRQ-----DVCYDS 111
G+CI+ + C +G CI + C D
Sbjct: 203 SGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDG-NCIHGSRQCDREYDCKDM 261
Query: 112 YQEGTCTLLRKQPITVKECCCSMGQ 136
E C + C G+
Sbjct: 262 SDEVGCV-NVTLCEGPNKFKCHSGE 285
Score = 29.0 bits (64), Expect = 1.5
Identities = 25/160 (15%), Positives = 42/160 (26%), Gaps = 5/160 (3%)
Query: 17 CEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPD-GRHCIDINECKENEGICEDGK 75
C ++ C + + C D NEC +N G C
Sbjct: 267 CVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS-HV 325
Query: 76 CINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMG 135
C ++ G C CP+GF L +C D+ + C D + + +
Sbjct: 326 CNDLKIGYECLCPDGFQLVAQ-RRCEDIDE--CQDPDTCSQLCVNLEGGYKCQCEEGFQL 382
Query: 136 QAWGRYCLPCPSPNSGEPATFWSHYPKGFFFVLFFLVIFW 175
+ C S + +I
Sbjct: 383 DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN 422
Score = 28.3 bits (62), Expect = 3.2
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 16 TCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICE-DG 74
C D +C+ C + GS CP + + C C+ D
Sbjct: 112 RCHD-GKCISRQFVCDSDRDCLDGSDEASCPVLT--CGPASFQCNSSTCIPQLWACDNDP 168
Query: 75 KCINIAGGVTCECPEGFMLSPNGMKCID 102
C + + C ++ + C
Sbjct: 169 DCEDGSDEWPQRCRGLYVFQGDSSPCSA 196
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 31.2 bits (70), Expect = 0.076
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 38 PGSFRCICPYGYALAPDGRHCIDINE--CKENEGIC-EDGKCINIAGG-VTCECPEGF 91
G+ C + D C+ CK+ G C + +C + C+C +
Sbjct: 23 DGTEEWRCLLYF--KEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEG 78
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 32.9 bits (74), Expect = 0.096
Identities = 15/76 (19%), Positives = 19/76 (25%), Gaps = 10/76 (13%)
Query: 19 DINECLE-LSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKE--NEGICEDGK 75
DI N A C C C + G C +CK+ G
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTT----GPDC---GKCKKNYQGRPWSPGS 342
Query: 76 CINIAGGVTCECPEGF 91
+ I G C
Sbjct: 343 YLPIPKGAANACIPSI 358
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 32.1 bits (73), Expect = 0.12
Identities = 18/106 (16%), Positives = 28/106 (26%), Gaps = 24/106 (22%)
Query: 17 CEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECK---ENEGICED 73
C + + ++ + + C EC N G C +
Sbjct: 109 CLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAI----FFKTC-QQAECPGGCRNGGFCNE 163
Query: 74 GKCINIAGGVTCECPEGFMLSPNGMKC-IDVRQDVCYDSYQEGTCT 118
+ CECP+GF G C + C G C
Sbjct: 164 RR--------ICECPDGFH----GPHCEKALCTPRC---MNGGLCV 194
Score = 31.4 bits (71), Expect = 0.24
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 23/82 (28%)
Query: 15 ETCEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-IDINECK-ENEGI 70
E CE I++C C +C +C C GY G C + E G
Sbjct: 240 EQCE-ISKC---PQPCRNGGKCIG---KSKCKCSKGYQ----GDLCSKPVCEPGCGAHGT 288
Query: 71 CEDGKCINIAGGVTCECPEGFM 92
C + C+C EG+
Sbjct: 289 CHEPN--------KCQCQEGWH 302
Score = 26.7 bits (59), Expect = 6.8
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 12/54 (22%)
Query: 40 SFRCICPYGYALAPDGRHCIDINECKENEGICED-GKCINIAGGVTCECPEGFM 92
CICP G+ G +C D C C + G C C CP G
Sbjct: 196 PGFCICPPGFY----GVNC-DKANCSTT---CFNGGTCFY---PGKCICPPGLE 238
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 31.4 bits (71), Expect = 0.19
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 2 STTMSVTGYRLRVETCEDINECLELS---NQCAFRCHNVPGSFRCICPYGYALAPDGRHC 58
S TG+ D++EC E C CHN G + C C +GY L D R C
Sbjct: 104 SNEERFTGFDAHYM-AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 29.7 bits (66), Expect = 0.28
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 36 NVPGSFRCICPYGYALAPDGRHCIDINE--CKENEGICE-DGKCINIAGG-----VTCEC 87
++ C C Y +G C++ C EN G C+ D KC G +TCEC
Sbjct: 21 HLDEREECKCLLNYK--QEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCEC 78
Query: 88 PEGF 91
+
Sbjct: 79 TKPD 82
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 31.4 bits (70), Expect = 0.34
Identities = 12/87 (13%), Positives = 18/87 (20%), Gaps = 7/87 (8%)
Query: 28 NQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICE-DGKCINIAGGVTCE 86
+ P G C E + +C G C + C+
Sbjct: 160 QSSLALPVDSGEVKLDDEPPNS---GGGSPCEAGEEGEGG--VCLNGGVCSVVDDQAVCD 214
Query: 87 CPE-GFMLSPNGMKCIDVRQDVCYDSY 112
C GF + Y
Sbjct: 215 CSRTGFRGKDCSQGKEEYIATFKGSEY 241
Score = 26.7 bits (58), Expect = 8.3
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 6/68 (8%)
Query: 54 DGRHCIDINECKENEGICE-DGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSY 112
C N C+ +G C + C+C L + C + YD
Sbjct: 612 PSCSRETAKPCLSNP--CKNNGMCRDGWNRYVCDCSGTGYLGRS---CEREATVLSYDGS 666
Query: 113 QEGTCTLL 120
L
Sbjct: 667 MFMKIQLP 674
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 30.5 bits (69), Expect = 0.45
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 10/124 (8%)
Query: 41 FRCICPYGYALAPDGRHCIDIN-ECKENEGICED-GKCINIAGGVTCECPEG---FMLSP 95
F C GY L + C+++ +C G P G + +
Sbjct: 28 FIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTM 87
Query: 96 NGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMGQAW----GRYCLPCPSPNSG 151
Q C++ Y + ++ C + G W +P P G
Sbjct: 88 GVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGI-WKNEQKGEKIPRCLPVCG 146
Query: 152 EPAT 155
+P
Sbjct: 147 KPVN 150
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 30.3 bits (68), Expect = 0.53
Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 22/98 (22%)
Query: 2 STTMSVTGYRLRVETCEDINECLELSN---QCAFRCHNVPGSFRCICPYGYALAPDGRHC 58
S TG+ D++EC E + C CHN G + C C +GY L D R
Sbjct: 104 SNEERFTGFDAHYM-AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRT- 161
Query: 59 IDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPN 96
C G + SP+
Sbjct: 162 -----------------CRVECSDNLFTQRTGVITSPD 182
Score = 27.3 bits (60), Expect = 4.5
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 10 YRLRVETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDIN-ECKEN 67
YR C ++ + + + + C GY + D EC ++
Sbjct: 275 YRAAGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKD 333
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 27.8 bits (61), Expect = 3.8
Identities = 21/128 (16%), Positives = 32/128 (25%), Gaps = 15/128 (11%)
Query: 17 CE-DINECLELSNQ-CAFRCHNVPGSFRCICPYGY-------ALAPDGRHCIDINECKEN 67
CE D C + Q C + +C C G+ +G EC
Sbjct: 512 CECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECS-G 570
Query: 68 EGICEDGKCINIAG--GVTCE-CPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQP 124
G C C +G C+ CP + C + + C+
Sbjct: 571 RGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLK--FEKGPFGKNCSAACPGL 628
Query: 125 ITVKECCC 132
Sbjct: 629 QLSNNPVK 636
Score = 27.0 bits (59), Expect = 8.2
Identities = 16/84 (19%), Positives = 21/84 (25%), Gaps = 10/84 (11%)
Query: 15 ETCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDG 74
T + + V +C C D + C +G E G
Sbjct: 395 ATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRD-------QSRDRSLC-HGKGFLECG 446
Query: 75 KCINIAG--GVTCECPEGFMLSPN 96
C G G CEC S
Sbjct: 447 ICRCDTGYIGKNCECQTQGRSSQE 470
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3
PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Length = 288
Score = 27.6 bits (62), Expect = 3.8
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 59 IDINECKENEGICEDGKCINIAGGVTC 85
+D+ + + GI E+G + I T
Sbjct: 52 VDLRDIGDLVGIREEGTDVVIGAMTTQ 78
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 27.7 bits (61), Expect = 4.5
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 62 NECKENEGICEDGKCINIAGGVTCECPEGFMLSPN 96
C+E+ G C+ G +C+C P
Sbjct: 186 TTCQED-SCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices,
oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas
stutzeri}
Length = 474
Score = 27.0 bits (60), Expect = 6.4
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 151 GEPATFW--SHYPKGFFFVLFFLVIFWSILP 179
+ W H GFF FL I + +P
Sbjct: 197 TDAMVQWWYGHNAVGFFLTAGFLGIMYYFVP 227
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 27.2 bits (59), Expect = 6.6
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 63 ECKENEGICEDGKCINIAG--GVTCECPEG 90
C + +G + G C G G CE
Sbjct: 468 HCSDGQGHLQCGVCSCAPGRLGRLCESRGL 497
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 26.8 bits (58), Expect = 7.2
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 14/138 (10%)
Query: 23 CLEL--SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECKENEGICEDGKCINIA 80
CL L + AF H C + C + + ++++ C C +
Sbjct: 30 CLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQ--C-QSFCEPLF 86
Query: 81 GGVTCECPEGFMLSPNGM-----KCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCCSMG 135
+ EC + C + + + +C + + VK+CC +
Sbjct: 87 PKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDNECS-GVKKCCSN-- 143
Query: 136 QAWGRYCLPCPSPNSGEP 153
G C + G P
Sbjct: 144 -GCGHTCQVPKTLYKGVP 160
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 26.7 bits (58), Expect = 7.9
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 27 SNQCAFRCHNVPGSFRCI--CPYGYALAPDGRHCIDINECKENEGICEDGKCINIAGGV- 83
+C C N RC+ CP Y C++ + C++ C++ + V
Sbjct: 222 PTKC-VACRNFYLDGRCVETCPPPY-YHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVI 279
Query: 84 -----TCECPEGFMLSPNGMKCIDVRQDVCYDSYQEGTCTLLRKQPITVKECCC 132
ECP G+ ++ + + C + + + C
Sbjct: 280 HNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC 333
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 8.4
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 19/56 (33%)
Query: 209 FLNFL-----------FDALLEHLMKEIARLF--------VLASLFMQQTETDKQT 245
FL ++ FD +L + E + + A L + T +T
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 26.4 bits (58), Expect = 9.7
Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 13/104 (12%)
Query: 53 PDGRHCIDINECKENEGICEDGKCINIAGGVTCECPEGFMLSPNGMKCIDVRQDVCYDSY 112
++ N C+ N E+G P F V ++ D
Sbjct: 54 NSAVQLVE-NFCR-NPDGDEEG-----VWCYVAGKPGDFGYCDLNYCEEAVEEE-TGDGL 105
Query: 113 QEGTCTLLRKQPITVKECCCSMGQAWGRYCLPCPSPNSGEPATF 156
E + + I + + G F
Sbjct: 106 DEDSD-----RAIEGATATSEYQTFFNPATFGSGEADCGLRPLF 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.478
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,828,559
Number of extensions: 227726
Number of successful extensions: 1313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1050
Number of HSP's successfully gapped: 303
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)