BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11799
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 201 CAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPG 260
CA +C + G+ +C C GY L DGR C D+NEC + G C+ CTN+EG++ C C G
Sbjct: 13 CAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAE-EGYCSQGCTNSEGAFQCWCEAG 71
Query: 261 FELSSD 266
+EL D
Sbjct: 72 YELRPD 77
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 235 CEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGY 294
C G CA C G+ C CH G+ L+ DG TC D +ECA + Q N G +
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGR-TCQDVNECAEEGYCSQGCTNSEGAF 64
Query: 295 KCGCPEGYVRHPFSNEC 311
+C C GY P C
Sbjct: 65 QCWCEAGYELRPDRRSC 81
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 20/85 (23%)
Query: 145 CINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAFR 204
C G+ +C C G++L G C D +EC ++ C +GC E
Sbjct: 17 CQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE--------------- 61
Query: 205 CHNVPGSFRCICPYGYALAPDGRHC 229
G+F+C C GY L PD R C
Sbjct: 62 -----GAFQCWCEAGYELRPDRRSC 81
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 442 CINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGC 482
C G+ +C C G++L G C D +EC ++ C +GC
Sbjct: 17 CQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGC 57
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 284 CQQICNLL-GGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGS 342
C Q C ++ G +C C GY C D NECA G C N+ G+
Sbjct: 13 CAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEE---------GYCSQGCTNSEGA 63
Query: 343 YRCGCPDGFQF 353
++C C G++
Sbjct: 64 FQCWCEAGYEL 74
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
NECL+ + C++ C+++ + C+CP G+ L R C DI+EC Q P C+ C N EG
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQLCVNLEG 87
Query: 252 SYTCGCHPGFELS 264
Y C C GF+L
Sbjct: 88 GYKCQCEEGFQLD 100
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLL 291
NEC G C++ C + + Y C C GF+L + C D DEC C Q+C NL
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVA--QRRCEDIDECQD-PDTCSQLCVNLE 86
Query: 292 GGYKCGCPEGYVRHPFSNEC 311
GGYKC C EG+ P + C
Sbjct: 87 GGYKCQCEEGFQLDPHTKAC 106
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 26/120 (21%)
Query: 110 YVISLKKKKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 169
Y I + ++ + +EC + G + C + + CLCP GF+L
Sbjct: 13 YDIPTTENLYFQGAMGTNECLDNNGGCSY-----VCNDLKIGYECLCPDGFQLVAQ---- 63
Query: 170 LDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
+ CEDI+EC + + C+ C N+ G ++C C G+ L P + C
Sbjct: 64 ----------------RRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 272 LDSDECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTG 330
+ ++EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 27 MGTNECLDNNGGCSYVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ- 80
Query: 331 ERGGKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 81 ----LCVNLEGGYKCQCEEGFQLD 100
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 27/93 (29%)
Query: 374 FGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGV 433
+ C L I G+ C CP G+Q + Q C DIDEC++
Sbjct: 41 YVCNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDPDTCS 79
Query: 434 AVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
+C +N G ++C C GF+LD C
Sbjct: 80 QLC------VNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
NECL+ + C++ C+++ + C+CP G+ L R C DI+EC Q P C+ C N EG
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQLCVNLEG 63
Query: 252 SYTCGCHPGFELS 264
Y C C GF+L
Sbjct: 64 GYKCQCEEGFQLD 76
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLL 291
NEC G C++ C + + Y C C GF+L + C D DEC C Q+C NL
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVA--QRRCEDIDECQD-PDTCSQLCVNLE 62
Query: 292 GGYKCGCPEGYVRHPFSNEC 311
GGYKC C EG+ P + C
Sbjct: 63 GGYKCQCEEGFQLDPHTKAC 82
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 144 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAF 203
C + + CLCP GF+L + CEDI+EC + + C+
Sbjct: 18 VCNDLKIGYECLCPDGFQLVAQ--------------------RRCEDIDECQD-PDTCSQ 56
Query: 204 RCHNVPGSFRCICPYGYALAPDGRHC 229
C N+ G ++C C G+ L P + C
Sbjct: 57 LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 272 LDSDECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTG 330
+ ++EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 3 MGTNECLDNNGGCSYVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ- 56
Query: 331 ERGGKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 57 ----LCVNLEGGYKCQCEEGFQLD 76
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 27/87 (31%)
Query: 374 FGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGV 433
+ C L I G+ C CP G+Q + Q C DIDEC++
Sbjct: 17 YVCNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDP---- 51
Query: 434 AVCPKPGTCINTMGSFRCLCPRGFKLD 460
C + C+N G ++C C GF+LD
Sbjct: 52 DTCSQ--LCVNLEGGYKCQCEEGFQLD 76
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC Q P C+ C N EG
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQLCVNLEG 98
Query: 252 SYTCGCHPGFEL 263
Y C C GF+L
Sbjct: 99 GYKCQCEEGFQL 110
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLL 291
NEC G C+H C + + Y C C GF+L + C D DEC C Q+C NL
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--QRRCEDIDECQDP-DTCSQLCVNLE 97
Query: 292 GGYKCGCPEGYVRHPFSNEC 311
GGYKC C EG+ P + C
Sbjct: 98 GGYKCQCEEGFQLDPHTKAC 117
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 274 SDECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGER 332
++EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 40 TNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ--- 91
Query: 333 GGKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 92 --LCVNLEGGYKCQCEEGFQLD 111
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 21/78 (26%)
Query: 152 FRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGS 211
+ CLCP GF+L + CEDI+EC + + C+ C N+ G
Sbjct: 61 YECLCPDGFQL--------------------VAQRRCEDIDECQD-PDTCSQLCVNLEGG 99
Query: 212 FRCICPYGYALAPDGRHC 229
++C C G+ L P + C
Sbjct: 100 YKCQCEEGFQLDPHTKAC 117
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 27/85 (31%)
Query: 376 CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAV 435
C L I G+ C CP G+Q + Q C DIDEC++
Sbjct: 54 CNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDP----DT 88
Query: 436 CPKPGTCINTMGSFRCLCPRGFKLD 460
C + C+N G ++C C GF+LD
Sbjct: 89 CSQ--LCVNLEGGYKCQCEEGFQLD 111
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 449 FRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGC 482
+ CLCP GF+L C D DEC D C + C
Sbjct: 61 YECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLC 93
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC Q P C+ C N EG
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQLCVNLEG 58
Query: 252 SYTCGCHPGFEL 263
Y C C GF+L
Sbjct: 59 GYKCQCEEGFQL 70
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLL 291
NEC G C+H C + + Y C C GF+L + C D DEC C Q+C NL
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--QRRCEDIDECQDP-DTCSQLCVNLE 57
Query: 292 GGYKCGCPEGYVRHPFSNEC 311
GGYKC C EG+ P + C
Sbjct: 58 GGYKCQCEEGFQLDPHTKAC 77
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 21/78 (26%)
Query: 152 FRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGS 211
+ CLCP GF+L + CEDI+EC + + C+ C N+ G
Sbjct: 21 YECLCPDGFQL--------------------VAQRRCEDIDECQD-PDTCSQLCVNLEGG 59
Query: 212 FRCICPYGYALAPDGRHC 229
++C C G+ L P + C
Sbjct: 60 YKCQCEEGFQLDPHTKAC 77
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 275 DECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERG 333
+EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ---- 51
Query: 334 GKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 52 -LCVNLEGGYKCQCEEGFQLD 71
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 27/85 (31%)
Query: 376 CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAV 435
C L I G+ C CP G+Q + Q C DIDEC++
Sbjct: 14 CNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDP----DT 48
Query: 436 CPKPGTCINTMGSFRCLCPRGFKLD 460
C + C+N G ++C C GF+LD
Sbjct: 49 CSQ--LCVNLEGGYKCQCEEGFQLD 71
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 449 FRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGC 482
+ CLCP GF+L C D DEC D C + C
Sbjct: 21 YECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLC 53
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC Q P C+ C N EG
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQLCVNLEG 87
Query: 252 SYTCGCHPGFELS 264
Y C C GF+L
Sbjct: 88 GYKCQCEEGFQLD 100
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLL 291
NEC G C+H C + + Y C C GF+L + C D DEC C Q+C NL
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--QRRCEDIDECQD-PDTCSQLCVNLE 86
Query: 292 GGYKCGCPEGYVRHPFSNEC 311
GGYKC C EG+ P + C
Sbjct: 87 GGYKCQCEEGFQLDPHTKAC 106
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 26/120 (21%)
Query: 110 YVISLKKKKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 169
Y I + ++ + +EC + G + C + + CLCP GF+L
Sbjct: 13 YDIPTTENLYFQGAMGTNECLDNNGGCS-----HVCNDLKIGYECLCPDGFQLVAQ---- 63
Query: 170 LDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
+ CEDI+EC + + C+ C N+ G ++C C G+ L P + C
Sbjct: 64 ----------------RRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 272 LDSDECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTG 330
+ ++EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 27 MGTNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ- 80
Query: 331 ERGGKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 81 ----LCVNLEGGYKCQCEEGFQLD 100
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 27/91 (29%)
Query: 376 CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAV 435
C L I G+ C CP G+Q + Q C DIDEC++ +
Sbjct: 43 CNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDPDTCSQL 81
Query: 436 CPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
C +N G ++C C GF+LD C
Sbjct: 82 C------VNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC Q P C+ C N EG
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQLCVNLEG 63
Query: 252 SYTCGCHPGFELS 264
Y C C GF+L
Sbjct: 64 GYKCQCEEGFQLD 76
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLL 291
NEC G C+H C + + Y C C GF+L + C D DEC C Q+C NL
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--QRRCEDIDECQD-PDTCSQLCVNLE 62
Query: 292 GGYKCGCPEGYVRHPFSNEC 311
GGYKC C EG+ P + C
Sbjct: 63 GGYKCQCEEGFQLDPHTKAC 82
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 144 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAF 203
C + + CLCP GF+L + CEDI+EC + + C+
Sbjct: 18 VCNDLKIGYECLCPDGFQLVAQ--------------------RRCEDIDECQD-PDTCSQ 56
Query: 204 RCHNVPGSFRCICPYGYALAPDGRHC 229
C N+ G ++C C G+ L P + C
Sbjct: 57 LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 272 LDSDECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTG 330
+ ++EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 3 MGTNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ- 56
Query: 331 ERGGKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 57 ----LCVNLEGGYKCQCEEGFQLD 76
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 27/85 (31%)
Query: 376 CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAV 435
C L I G+ C CP G+Q + Q C DIDEC++
Sbjct: 19 CNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDP----DT 53
Query: 436 CPKPGTCINTMGSFRCLCPRGFKLD 460
C + C+N G ++C C GF+LD
Sbjct: 54 CSQ--LCVNLEGGYKCQCEEGFQLD 76
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC Q P C+ C N EG
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQLCVNLEG 60
Query: 252 SYTCGCHPGFELS 264
Y C C GF+L
Sbjct: 61 GYKCQCEEGFQLD 73
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLL 291
NEC G C+H C + + Y C C GF+L + C D DEC C Q+C NL
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--QRRCEDIDECQD-PDTCSQLCVNLE 59
Query: 292 GGYKCGCPEGYVRHPFSNEC 311
GGYKC C EG+ P + C
Sbjct: 60 GGYKCQCEEGFQLDPHTKAC 79
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 144 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAF 203
C + + CLCP GF+L + CEDI+EC + + C+
Sbjct: 15 VCNDLKIGYECLCPDGFQLVAQ--------------------RRCEDIDECQD-PDTCSQ 53
Query: 204 RCHNVPGSFRCICPYGYALAPDGRHC 229
C N+ G ++C C G+ L P + C
Sbjct: 54 LCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 274 SDECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGER 332
++EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ--- 53
Query: 333 GGKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 54 --LCVNLEGGYKCQCEEGFQLD 73
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 27/91 (29%)
Query: 376 CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAV 435
C L I G+ C CP G+Q + Q C DIDEC++ +
Sbjct: 16 CNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDPDTCSQL 54
Query: 436 CPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
C +N G ++C C GF+LD C
Sbjct: 55 C------VNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC Q P C+ C N EG
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQLCVNLEG 60
Query: 252 SYTCGCHPGFELS 264
Y C C GF+L
Sbjct: 61 GYKCQCEEGFQLD 73
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLL 291
NEC G C+H C + + Y C C GF+L + C D DEC C Q+C NL
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--QRRCEDIDECQD-PDTCSQLCVNLE 59
Query: 292 GGYKCGCPEGYVRHPFSNEC 311
GGYKC C EG+ P + C
Sbjct: 60 GGYKCQCEEGFQLDPHTKAC 79
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 144 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAF 203
C + + CLCP GF+L + CEDI+EC + + C+
Sbjct: 15 VCNDLKIGYECLCPDGFQLVAQ--------------------RRCEDIDECQD-PDTCSQ 53
Query: 204 RCHNVPGSFRCICPYGYALAPDGRHC 229
C N+ G ++C C G+ L P + C
Sbjct: 54 LCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 274 SDECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGER 332
++EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ--- 53
Query: 333 GGKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 54 --LCVNLEGGYKCQCEEGFQLD 73
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 27/91 (29%)
Query: 376 CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAV 435
C L I G+ C CP G+Q + Q C DIDEC++ +
Sbjct: 16 CNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDPDTCSQL 54
Query: 436 CPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
C +N G ++C C GF+LD C
Sbjct: 55 C------VNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 125 DMDECKEE--INGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCR 182
D+DEC+ INGV C N+ GSF C C LD T T C++ + T
Sbjct: 3 DIDECESSPCINGV--------CKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVI 54
Query: 183 EGCQTCEDINECLELSNQCAFRCHNVPGS------FRCICPYGYALAPDGRHCIDINECE 236
+G CE L +QC GS IC GY+ G C DI+ECE
Sbjct: 55 DG--RCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRI-KGTQCEDIDECE 111
Query: 237 QFPGLCAH-TCTNTEGSYTCGCHPGFELSSDG 267
FPG+C + C NT GS+ C C G L + G
Sbjct: 112 VFPGVCKNGLCVNTRGSFKCQCPSGMTLDATG 143
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 60/158 (37%), Gaps = 16/158 (10%)
Query: 313 DDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAAXXXXXXXXXXXXXXXX 372
D +EC +PC G C N+ GS+ C C +
Sbjct: 3 DIDECESSPC---------INGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTV 53
Query: 373 XFGCTPLGISGFSCE---CPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEE 429
G + I+G + + C S G L + G+ + DIDEC E
Sbjct: 54 IDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDEC-EV 112
Query: 430 INGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCL 467
GV K G C+NT GSF+C CP G LD TG CL
Sbjct: 113 FPGVC---KNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCL 170
D+DEC E GV K G C+NT GSF+C CP G LD TG CL
Sbjct: 106 DIDEC-EVFPGVC---KNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 421 GDIDECKEE--INGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLD 468
DIDEC+ INGV C N+ GSF C C LD T T C++
Sbjct: 2 ADIDECESSPCINGV--------CKNSPGSFICECSSESTLDPTKTICIE 43
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 189 EDINECLELSNQCAFR-CHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCT 247
+D++EC + C C N+PG F C CP GY + C DI+EC + +CA C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE--NMCAQLCV 58
Query: 248 NTEGSYTCGC--HPGFELSSD 266
N G YTC C GF+L+ D
Sbjct: 59 NYPGGYTCYCDGKKGFKLAQD 79
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 48/109 (44%), Gaps = 31/109 (28%)
Query: 125 DMDEC--KEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCR 182
D+DEC K I G AVC N G F C CP G++ +
Sbjct: 2 DVDECSLKPSICGTAVCK------NIPGDFECECPEGYRYNLKS---------------- 39
Query: 183 EGCQTCEDINECLELSNQCAFRCHNVPGSFRCIC--PYGYALAPDGRHC 229
++CEDI+EC E N CA C N PG + C C G+ LA D + C
Sbjct: 40 ---KSCEDIDECSE--NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 273 DSDECATGRHIC-QQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTG 330
D DEC+ IC +C N+ G ++C CPEGY + S C D +EC+ N C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMC-------- 53
Query: 331 ERGGKCFNTAGSYRCGCPDGFQFEAA 356
C N G Y C C F+ A
Sbjct: 54 --AQLCVNYPGGYTCYCDGKKGFKLA 77
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 422 DIDEC--KEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDD 475
D+DEC K I G AVC N G F C CP G++ + C D DEC+++
Sbjct: 2 DVDECSLKPSICGTAVCK------NIPGDFECECPEGYRYNLKSKSCEDIDECSEN 51
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 190 DINECLELSNQCAF-RCHNVPGSFRCICPYGYALA-PDGRHCIDINECEQFPGLC-AHTC 246
DI+EC + C +C N PG F C C GY ++C+DI+EC++ P LC C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 247 TNTEGSYTCGCHPGFELSSDGSG 269
NTEGSY C C PG +LS + S
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISA 84
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 231 DINECEQFPGLCAH-TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQ-QIC 288
DI+EC P LC C NT G + C C G+E C+D DEC +C+ +C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 289 -NLLGGYKCGCPEGYVRHPFSNECI 312
N G Y+C CP G+ P + CI
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISACI 86
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 273 DSDECATGRHICQ--QICNLLGGYKCGCPEGYVR-HPFSNECIDDNECARNPCEPSSNTT 329
D DEC +C Q N G ++C C EGY C+D +EC R+P
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDP-------L 54
Query: 330 GERGGKCFNTAGSYRCGCPDGFQF 353
RGG C NT GSYRC CP G Q
Sbjct: 55 LCRGGVCHNTEGSYRCECPPGHQL 78
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 25/108 (23%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLD-RTGTFCLDQDECTDDS-KCR 182
D+DEC+ + +C + G C+NT G F C C G++ C+D DEC D CR
Sbjct: 2 DIDECRISPD---LCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR 57
Query: 183 EGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
G CHN GS+RC CP G+ L+P+ CI
Sbjct: 58 GG-------------------VCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 387 ECPSGYQRIGQGHCLAT-------ISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKP 439
EC G+G C+ T G GF + N DIDEC+ + + +
Sbjct: 5 ECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMK--NCMDIDECQRD----PLLCRG 58
Query: 440 GTCINTMGSFRCLCPRGFKLDRTGTFCL 467
G C NT GS+RC CP G +L + C+
Sbjct: 59 GVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 124 LDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCL 170
+D+DEC+ + + + G C NT GS+RC CP G +L + C+
Sbjct: 44 MDIDECQRD----PLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 229 CIDINECEQFPGLCA---HTCTNTEGSYTCGCHPGFE-------LSSDGSGTCLDSDECA 278
C DINEC + C NTEGSY C C PG+E ++ TC D DEC+
Sbjct: 41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECS 100
Query: 279 TGRHICQQ--IC-NLLGGYKCGCPEGYV-RHPFSN 309
+G+H C +C N +G Y C C G+ RH N
Sbjct: 101 SGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPN 135
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 22/114 (19%)
Query: 255 CGCHPGF----ELSSDGSGTCLDSDECATGRHIC----QQICNLLGGYKCGCPEGY---- 302
C C+PGF E+ + TC D +ECAT + N G Y C C GY
Sbjct: 21 CRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVS 80
Query: 303 ----VRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQ 352
++ N C D +EC+ + S+T CFNT GSY C C G++
Sbjct: 81 GAKTFKNESENTCQDVDECSSGQHQCDSSTV------CFNTVGSYSCRCRPGWK 128
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 19/112 (16%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D++EC ++ V+ C K C NT GS+ C+C G++ ++ E
Sbjct: 43 DINECAT-LSKVS-CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESE---------- 90
Query: 185 CQTCEDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHCIDINE 234
TC+D++EC +QC + C N GS+ C C G+ RH I N+
Sbjct: 91 -NTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP----RHGIPNNQ 137
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 384 FSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCI 443
+ C C GY+ + F++ D+DEC +G C C
Sbjct: 68 YDCVCSPGYEPVSGAK-----------TFKNESENTCQDVDECS---SGQHQCDSSTVCF 113
Query: 444 NTMGSFRCLCPRGFK 458
NT+GS+ C C G+K
Sbjct: 114 NTVGSYSCRCRPGWK 128
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 400 CLATISSGLYPGFRSYERPNLGDIDECKEEINGVAV-----CPKPGTCINTMGSFRCLCP 454
C+ + PGF S+ ++ C ++IN A C K C NT GS+ C+C
Sbjct: 15 CVNATACRCNPGFSSFSEIITTPMETC-DDINECATLSKVSCGKFSDCWNTEGSYDCVCS 73
Query: 455 RGFK--------LDRTGTFCLDQDECT 473
G++ + + C D DEC+
Sbjct: 74 PGYEPVSGAKTFKNESENTCQDVDECS 100
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 24/161 (14%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLD--QDECTDDSKCR 182
D++EC + ++ G C+NT GS+ C CP F+L+ T C+D C D + R
Sbjct: 2 DVNECLDPTTCIS-----GNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPR 56
Query: 183 --EGCQTCED--------INECLELSNQCAFRCHNVPG----SFRCICPYGYALAPDGRH 228
G C + + C L C P ++ +CP G P+
Sbjct: 57 GDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPNPIT 116
Query: 229 CI--DINECEQFPGLC-AHTCTNTEGSYTCGCHPGFELSSD 266
I DI+EC++ PGLC C NT GS+ C C G+ L+ D
Sbjct: 117 VILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNED 157
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 190 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNT 249
D+NECL+ + + C N PGS+ C CP + L P C+D + +
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPR---GD 58
Query: 250 EGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCP--EGYVRHPF 307
G C G +S S C T C + YK CP EG+ +P
Sbjct: 59 NGDTACSNEIGVGVSK-ASCCCSLGKAWGTPCEXCPAV--NTSEYKILCPGGEGFRPNPI 115
Query: 308 SNECIDDNECARNP--CEPSSNTTGERGGKCFNTAGSYRCGCPDGFQF 353
+ D +EC P C+ GGKC NT GS++C CP G+
Sbjct: 116 TVILEDIDECQELPGLCQ---------GGKCINTFGSFQCRCPTGYYL 154
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 67/177 (37%), Gaps = 38/177 (21%)
Query: 309 NECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAAXXXXXXXXXXX- 367
NEC+D C G C NT GSY C CP F+
Sbjct: 4 NECLDPTTCIS--------------GNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNC 49
Query: 368 ------XXXXXXFGCTP---LGISGFSCECPSGYQRIGQGHCLATISSGLY----PGFRS 414
C+ +G+S SC C G +++ Y PG
Sbjct: 50 YLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEG 109
Query: 415 YERPN-----LGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
+ RPN L DIDEC +E+ G+ + G CINT GSF+C CP G+ L+ C
Sbjct: 110 F-RPNPITVILEDIDEC-QELPGLC---QGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 189 EDINECLELSNQC-AFRCHNVPGSFRCICPYGYALAPDGRHC 229
EDI+EC EL C +C N GSF+C CP GY L D R C
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 114 LKKKKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 169
+ + D+DEC +E+ G+ + G CINT GSF+C CP G+ L+ C
Sbjct: 110 FRPNPITVILEDIDEC-QELPGLC---QGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLD 468
D++EC + ++ G C+NT GS+ C CP F+L+ T C+D
Sbjct: 2 DVNECLDPTTCIS-----GNCVNTPGSYICDCPPDFELNPTRVGCVD 43
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 171 DQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNV-----PGSFRCICPYGYALAPD 225
D+ +C+D C G + C+ +C ++S++ C NV P F+C G + D
Sbjct: 236 DEFQCSD-GNCIHGSRQCDREYDCKDMSDEVG--CVNVTLCEGPNKFKC--HSGECITLD 290
Query: 226 -----GRHCID----------INECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGT 270
R C D NEC G C+H C + + Y C C GF+L +
Sbjct: 291 KVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--QRR 348
Query: 271 CLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNEC 311
C D DEC C Q+C NL GGYKC C EG+ P + C
Sbjct: 349 CEDIDECQDP-DTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 389
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 274 SDECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGER 332
++EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 312 TNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ--- 363
Query: 333 GGKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 364 --LCVNLEGGYKCQCEEGFQLD 383
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 27/85 (31%)
Query: 376 CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAV 435
C L I G+ C CP G+Q + Q C DIDEC++
Sbjct: 326 CNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDP----DT 360
Query: 436 CPKPGTCINTMGSFRCLCPRGFKLD 460
C + C+N G ++C C GF+LD
Sbjct: 361 CSQ--LCVNLEGGYKCQCEEGFQLD 383
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 449 FRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGC 482
+ CLCP GF+L C D DEC D C + C
Sbjct: 333 YECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLC 365
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 178 DSKCREGCQTCEDINECLELSNQCAFRCHNV-----PGSFRCICPYGYALAPD-----GR 227
D C G + C+ +C ++S++ C NV P F+C G + D R
Sbjct: 224 DGNCIHGSRQCDREYDCKDMSDEVG--CVNVTLCEGPNKFKC--HSGECITLDKVCNMAR 279
Query: 228 HCID----------INECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDEC 277
C D NEC G C+H C + + Y C C GF+L + C D DEC
Sbjct: 280 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--QRRCEDIDEC 337
Query: 278 ATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNEC 311
C Q+C NL GGYKC C EG+ P + C
Sbjct: 338 QDP-DTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 371
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 274 SDECATGRHICQQICNLLG-GYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGER 332
++EC C +CN L GY+C CP+G+ + C D +EC +P + +
Sbjct: 294 TNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQ----DPDTCSQ--- 345
Query: 333 GGKCFNTAGSYRCGCPDGFQFE 354
C N G Y+C C +GFQ +
Sbjct: 346 --LCVNLEGGYKCQCEEGFQLD 365
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 27/85 (31%)
Query: 376 CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAV 435
C L I G+ C CP G+Q + Q C DIDEC++
Sbjct: 308 CNDLKI-GYECLCPDGFQLVAQRRC--------------------EDIDECQDP----DT 342
Query: 436 CPKPGTCINTMGSFRCLCPRGFKLD 460
C + C+N G ++C C GF+LD
Sbjct: 343 CSQ--LCVNLEGGYKCQCEEGFQLD 365
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 441 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGC 482
C + + CLCP GF+L C D DEC D C + C
Sbjct: 307 VCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLC 347
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 24/161 (14%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLD--QDECTDDSKCR 182
D++EC + ++ G C+NT GS+ C CP F+L+ T C+D C D + R
Sbjct: 2 DVNECLDPTTCIS-----GNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPR 56
Query: 183 --EGCQTCED--------INECLELSNQCAFRCHNVPG----SFRCICPYGYALAPDGRH 228
G C + + C L C P ++ +CP G P+
Sbjct: 57 GDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPIT 116
Query: 229 CI--DINECEQFPGLC-AHTCTNTEGSYTCGCHPGFELSSD 266
I DI+EC++ PGLC C NT GS+ C C G+ L+ D
Sbjct: 117 VILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNED 157
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 190 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNT 249
D+NECL+ + + C N PGS+ C CP + L P C+D + +
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPR---GD 58
Query: 250 EGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCP--EGYVRHPF 307
G C G +S S C T +C + YK CP EG+ +P
Sbjct: 59 NGDTACSNEIGVGVSK-ASCCCSLGKAWGTPCEMCPAV--NTSEYKILCPGGEGFRPNPI 115
Query: 308 SNECIDDNECARNP--CEPSSNTTGERGGKCFNTAGSYRCGCPDGFQF 353
+ D +EC P C+ GGKC NT GS++C CP G+
Sbjct: 116 TVILEDIDECQELPGLCQ---------GGKCINTFGSFQCRCPTGYYL 154
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 67/177 (37%), Gaps = 38/177 (21%)
Query: 309 NECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAAXXXXXXXXXXX- 367
NEC+D C G C NT GSY C CP F+
Sbjct: 4 NECLDPTTCIS--------------GNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNC 49
Query: 368 ------XXXXXXFGCTP---LGISGFSCECPSGYQRIGQGHCLATISSGLY----PGFRS 414
C+ +G+S SC C G +++ Y PG
Sbjct: 50 YLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEG 109
Query: 415 YERPN-----LGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
+ RPN L DIDEC +E+ G+ + G CINT GSF+C CP G+ L+ C
Sbjct: 110 F-RPNPITVILEDIDEC-QELPGLC---QGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 189 EDINECLELSNQC-AFRCHNVPGSFRCICPYGYALAPDGRHC 229
EDI+EC EL C +C N GSF+C CP GY L D R C
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 114 LKKKKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 169
+ + D+DEC +E+ G+ + G CINT GSF+C CP G+ L+ C
Sbjct: 110 FRPNPITVILEDIDEC-QELPGLC---QGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLD 468
D++EC + ++ G C+NT GS+ C CP F+L+ T C+D
Sbjct: 2 DVNECLDPTTCIS-----GNCVNTPGSYICDCPPDFELNPTRVGCVD 43
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 47/101 (46%), Gaps = 26/101 (25%)
Query: 124 LDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCRE 183
+DMDECKE VC K G CINT GS+RC CP G+ L G C+D DEC+ + C
Sbjct: 3 VDMDECKEP----DVC-KHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGN 55
Query: 184 GCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAP 224
G C NV G F C C G+ P
Sbjct: 56 G-------------------TCKNVIGGFECTCEEGFEPGP 77
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Query: 230 IDINECEQFPGLCAH-TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC 288
+D++EC++ P +C H C NT+GSY C C G+ L+ + C+D+DEC+ G C
Sbjct: 3 VDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAGN---ECVDTDECSVGNPCGNGTC 58
Query: 289 -NLLGGYKCGCPEGYVRHPF 307
N++GG++C C EG+ P
Sbjct: 59 KNVIGGFECTCEEGFEPGPM 78
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 481
D+DECKE VC K G CINT GS+RC CP G+ L G C+D DEC+ + C G
Sbjct: 4 DMDECKEP----DVC-KHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNG 56
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 272 LDSDECATGRHICQ--QICNLLGGYKCGCPEGYVRHPFSNECIDDNECAR-NPCEPSSNT 328
+D DEC +C+ Q N G Y+C CP GY+ NEC+D +EC+ NPC
Sbjct: 3 VDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSVGNPC------ 53
Query: 329 TGERGGKCFNTAGSYRCGCPDGFQ 352
G C N G + C C +GF+
Sbjct: 54 ---GNGTCKNVIGGFECTCEEGFE 74
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 189 EDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGLCAHT 245
+D++EC +N C A +C N GSF C C GY G C ID+NEC P T
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNPCQNDAT 58
Query: 246 CTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVR 304
C + G + C C PG+E G +++DECA+ + C + + ++C CP G+
Sbjct: 59 CLDQIGEFQCICMPGYE----GVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114
Query: 305 H 305
H
Sbjct: 115 H 115
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 59/139 (42%), Gaps = 32/139 (23%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D+DEC G C G CINT+GSF C C +G+ R
Sbjct: 4 DVDECSL---GANPCEHAGKCINTLGSFECQCLQGYTGPR-------------------- 40
Query: 185 CQTCE-DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGLC 242
CE D+NEC+ Q C + G F+CIC GY +G HC ++ +EC P L
Sbjct: 41 ---CEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY----EGVHCEVNTDECASSPCLH 93
Query: 243 AHTCTNTEGSYTCGCHPGF 261
C + + C C GF
Sbjct: 94 NGRCLDKINEFQCECPTGF 112
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 231 DINECEQFPGLCAHT--CTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC 288
D++EC C H C NT GS+ C C G+ G +D +EC + C
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNPCQNDATC 59
Query: 289 -NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGC 347
+ +G ++C C GY ++ +ECA +PC G+C + ++C C
Sbjct: 60 LDQIGEFQCICMPGYEGVHCE---VNTDECASSPCL--------HNGRCLDKINEFQCEC 108
Query: 348 PDGF 351
P GF
Sbjct: 109 PTGF 112
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTDD 475
D+DEC G C G CINT+GSF C C +G+ TG C +D +EC +
Sbjct: 4 DVDECSL---GANPCEHAGKCINTLGSFECQCLQGY----TGPRCEIDVNECVSN 51
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 51/155 (32%), Gaps = 42/155 (27%)
Query: 312 IDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAAXXXXXXXXXXXXXXX 371
+D+ NPCE GKC NT GS+ C C G+
Sbjct: 5 VDECSLGANPCE--------HAGKCINTLGSFECQCLQGYT--GPRCEIDVNECVSNPCQ 54
Query: 372 XXFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEIN 431
C I F C C GY+ + HC + DEC
Sbjct: 55 NDATCLD-QIGEFQCICMPGYEGV---HCEV-------------------NTDECAS--- 88
Query: 432 GVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
+ C G C++ + F+C CP GF TG C
Sbjct: 89 --SPCLHNGRCLDKINEFQCECPTGF----TGHLC 117
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 398 GHCLATISSGLYPGFRSYERPNLG-DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRG 456
G C+ T+ S + Y P D++EC C TC++ +G F+C+C G
Sbjct: 19 GKCINTLGSFECQCLQGYTGPRCEIDVNECVSN-----PCQNDATCLDQIGEFQCICMPG 73
Query: 457 FKLDRTGTFC-LDQDECT 473
++ G C ++ DEC
Sbjct: 74 YE----GVHCEVNTDECA 87
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 189 EDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGLCAHT 245
+D++EC +N C A +C N GSF C C GY G C ID+NEC P T
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNPCQNDAT 56
Query: 246 CTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVR 304
C + G + C C PG+E G +++DECA+ + C + + ++C CP G+
Sbjct: 57 CLDQIGEFQCICMPGYE----GVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 112
Query: 305 H 305
H
Sbjct: 113 H 113
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 59/139 (42%), Gaps = 32/139 (23%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D+DEC G C G CINT+GSF C C +G+ R
Sbjct: 2 DVDECSL---GANPCEHAGKCINTLGSFECQCLQGYTGPR-------------------- 38
Query: 185 CQTCE-DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGLC 242
CE D+NEC+ Q C + G F+CIC GY +G HC ++ +EC P L
Sbjct: 39 ---CEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY----EGVHCEVNTDECASSPCLH 91
Query: 243 AHTCTNTEGSYTCGCHPGF 261
C + + C C GF
Sbjct: 92 NGRCLDKINEFQCECPTGF 110
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 231 DINECEQFPGLCAHT--CTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC 288
D++EC C H C NT GS+ C C G+ G +D +EC + C
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGY----TGPRCEIDVNECVSNPCQNDATC 57
Query: 289 -NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGC 347
+ +G ++C C GY ++ +ECA +PC G+C + ++C C
Sbjct: 58 LDQIGEFQCICMPGYEGVHCE---VNTDECASSPCL--------HNGRCLDKINEFQCEC 106
Query: 348 PDGF 351
P GF
Sbjct: 107 PTGF 110
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTDD 475
D+DEC G C G CINT+GSF C C +G+ TG C +D +EC +
Sbjct: 2 DVDECSL---GANPCEHAGKCINTLGSFECQCLQGY----TGPRCEIDVNECVSN 49
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 44/156 (28%)
Query: 312 IDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAAXXXXXXXXXXXXXXX 371
+D+ NPCE GKC NT GS+ C C G+
Sbjct: 3 VDECSLGANPCE--------HAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQND 54
Query: 372 XXFGCTPLG-ISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEI 430
T L I F C C GY+ + HC + DEC
Sbjct: 55 A----TCLDQIGEFQCICMPGYEGV---HCEV-------------------NTDECAS-- 86
Query: 431 NGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
+ C G C++ + F+C CP GF TG C
Sbjct: 87 ---SPCLHNGRCLDKINEFQCECPTGF----TGHLC 115
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 55/134 (41%), Gaps = 29/134 (21%)
Query: 197 LSNQC--AFRCHNVP-GSFRC-ICPYGYALAPDGRHCIDINECEQFPGLCAHT-----CT 247
LSN C +C + P GS+ C CP G+ +G HC D++EC P +C T C
Sbjct: 4 LSNPCFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDECALVPDICFSTSKVPRCV 61
Query: 248 NTEGSYTC--------GCHP---GFELSSDGSGTCLDSDECATGRHICQQI--CNLLGG- 293
NT+ + C G P G E + C + C H C + C LG
Sbjct: 62 NTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHF 121
Query: 294 ----YKCGCPEGYV 303
YKC C GY
Sbjct: 122 SDPMYKCECQTGYA 135
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCL-CPRGFKLDRTGTFCLD-----QDECTDD 178
D+DEC + K C+NT F CL CP ++ ++ L+ + C +
Sbjct: 40 DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPE 99
Query: 179 SKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQF 238
+ C++ C EC+ L H ++C C GY A DG C + ++ + +
Sbjct: 100 NPCKDKTHNCHKHAECIYLG-------HFSDPMYKCECQTGY--AGDGLICGEDSDLDGW 150
Query: 239 PGLCAHTCTNTEGSYTC 255
P L TN +Y C
Sbjct: 151 PSLNLVCATN--ATYHC 165
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 55/134 (41%), Gaps = 29/134 (21%)
Query: 197 LSNQC--AFRCHNVP-GSFRC-ICPYGYALAPDGRHCIDINECEQFPGLCAHT-----CT 247
LSN C +C + P GS+ C CP G+ +G HC D++EC P +C T C
Sbjct: 7 LSNPCFPGAQCSSFPDGSWSCGFCPVGFLG--NGTHCEDLDECALVPDICFSTSKVPRCV 64
Query: 248 NTEGSYTC--------GCHP---GFELSSDGSGTCLDSDECATGRHICQQI--CNLLG-- 292
NT+ + C G P G E + C + C H C + C LG
Sbjct: 65 NTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHF 124
Query: 293 ---GYKCGCPEGYV 303
YKC C GY
Sbjct: 125 SDPXYKCECQTGYA 138
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCL-CPRGFKLDRTGTFCLD-----QDECTDD 178
D+DEC + K C+NT F CL CP ++ ++ L+ + C +
Sbjct: 43 DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPE 102
Query: 179 SKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQF 238
+ C++ C EC+ L H ++C C GYA DG C + ++ + +
Sbjct: 103 NPCKDKTHNCHKHAECIYLG-------HFSDPXYKCECQTGYAG--DGLICGEDSDLDGW 153
Query: 239 PGLCAHTCTNTEGSYTC 255
P L TN +Y C
Sbjct: 154 PNLNLVCATNA--TYHC 168
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 30/124 (24%)
Query: 109 FYVISLKKKKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTF 168
+ S K +F++ + D D+C+ + C G C + +G + C C GF
Sbjct: 25 VFEDSDKTNEFWNKYKDGDQCE-----TSPCQNQGKCKDGLGEYTCTCLEGF-------- 71
Query: 169 CLDQDECTDDSKCREGCQTCEDINECL-ELSN-QCAFRCHNVPGSFRCICPYGYALAPDG 226
EG + CE L L N C CH S C C GY LA +G
Sbjct: 72 --------------EG-KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG 116
Query: 227 RHCI 230
+ CI
Sbjct: 117 KACI 120
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 232 INECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSD 266
+NEC + G C+ CTN+EG++ C C G+EL D
Sbjct: 1 VNECAE-EGYCSQGCTNSEGAFQCWCEAGYELRPD 34
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 191 INECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
+NEC E C+ C N G+F+C C GY L PD R C
Sbjct: 1 VNECAE-EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSC 38
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 26/122 (21%)
Query: 109 FYVISLKKKKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTF 168
+ S K +F++ + D D+C+ + C G C + +G + C C GF+ F
Sbjct: 25 VFEDSDKTNEFWNKYKDGDQCE-----TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 79
Query: 169 CLDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRH 228
R+ C D +C + CH S C C GY LA +G+
Sbjct: 80 ------------TRKLCSL--DNGDCDQF-------CHEEQNSVVCSCARGYTLADNGKA 118
Query: 229 CI 230
CI
Sbjct: 119 CI 120
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 213 RCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELS 264
C CP GY L DG C DI+ECE G C+ C N G++ C C P L+
Sbjct: 62 SCECPEGYILD-DGFICTDIDECENG-GFCSGVCHNLPGTFECICGPDSALA 111
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 23/77 (29%)
Query: 147 NTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCH 206
NT S C CP G+ LD G C D DEC E C+ CH
Sbjct: 58 NTQAS--CECPEGYILDD-GFICTDIDEC--------------------ENGGFCSGVCH 94
Query: 207 NVPGSFRCICPYGYALA 223
N+PG+F CIC ALA
Sbjct: 95 NLPGTFECICGPDSALA 111
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 213 RCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELS 264
C CP GY L DG C DI+ECE G C+ C N G++ C C P L+
Sbjct: 62 SCECPEGYILD-DGFICTDIDECENG-GFCSGVCHNLPGTFECICGPDSALA 111
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 23/77 (29%)
Query: 147 NTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCH 206
NT S C CP G+ LD G C D DEC E C+ CH
Sbjct: 58 NTQAS--CECPEGYILDD-GFICTDIDEC--------------------ENGGFCSGVCH 94
Query: 207 NVPGSFRCICPYGYALA 223
N+PG+F CIC ALA
Sbjct: 95 NLPGTFECICGPDSALA 111
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 189 EDINECLELSNQCAFRCHNV-PGSFRCICPYGYALAPDGRHCIDINECEQF--PGLCAHT 245
E ++ C + C ++C + S+ C+C G+A P H C+ F C
Sbjct: 2 EPVDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIPHEPH-----RCQMFCNQTACPAD 54
Query: 246 C-TNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGC 298
C NT+ S C C G+ L D C D DEC G C +C NL G ++C C
Sbjct: 55 CDPNTQAS--CECPEGYIL--DDGFICTDIDECENGG-FCSGVCHNLPGTFECIC 104
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 26/121 (21%)
Query: 110 YVISLKKKKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 169
+ S K F++ + D D+C+ + C G C + +G + C C GF+ F
Sbjct: 31 FXDSDKTNXFWNKYKDGDQCE-----TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF- 84
Query: 170 LDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
R+ C D +C + CH S C C GY LA +G+ C
Sbjct: 85 -----------TRKLCSL--DNGDCDQF-------CHEEQNSVVCSCARGYTLADNGKAC 124
Query: 230 I 230
I
Sbjct: 125 I 125
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 235 CEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHI-CQQICNLLG- 292
C P L +C ++ YTC C PG+E GS L +EC R CQ C L G
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYE----GSNCELAKNECHPERTDGCQHFC-LPGQ 62
Query: 293 -GYKCGCPEGYVRHPFSNECIDDNECA 318
Y C C +GY +C+ ++CA
Sbjct: 63 ESYTCSCAQGYRLGEDHKQCVPHDQCA 89
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 205 CHNVPGSFRCICPYGYALAPDGRHC-IDINEC--EQFPGLCAHTCTNTEGSYTCGCHPGF 261
C + + C C GY +G +C + NEC E+ G C H C + SYTC C G+
Sbjct: 19 CQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDG-CQHFCLPGQESYTCSCAQGY 73
Query: 262 ELSSDGSGTCLDSDECATG 280
L D C+ D+CA G
Sbjct: 74 RLGEDHK-QCVPHDQCACG 91
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 190 DINECLELSNQ---CAFRCHNVPGSFRCICPYGYALAPDGRHC 229
D++EC E ++ C CHN G + C C +GY L D R C
Sbjct: 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 190 DINECLELSNQ---CAFRCHNVPGSFRCICPYGYALAPDGRHC 229
D++EC E ++ C CHN G + C C +GY L D R C
Sbjct: 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 266 DGSGTCLDSDECATGRH---ICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNP 321
D +D DEC C C N +GGY C C GY+ H DN R
Sbjct: 113 DAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILH-------TDNRTCRVE 165
Query: 322 CEPSSNTTGERGG 334
C S N +R G
Sbjct: 166 C--SDNLFTQRTG 176
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 230 IDINEC-------EQFPG-LCAHTCTNTEGSYTCGCHPGFELSSD 266
+D++EC E+ P C H C N G Y C C PG+EL D
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQED 46
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 190 DINECLELSN--------QCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
D++EC S QC CHN G + C C GY L D C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 231 DINECEQFPGL-CAHTCTNTEGSYTCGCHPGFELSSD 266
DINEC F + C+H C N G Y C C P + L D
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDD 152
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 190 DINECLELSN-QCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
DINEC + + C+ C+N G + C CP Y L D ++C
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 29/116 (25%)
Query: 115 KKKKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQD 173
K +F+ ++D D+C+ C G C + + S+ C C GF+ G C LD
Sbjct: 37 KTNEFWKQYVDGDQCEPN-----PCLNGGLCKDDINSYECWCQVGFE----GKNCELDAT 87
Query: 174 ECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
+ +C++ C+T D C C GY LAPD + C
Sbjct: 88 CNIKNGRCKQFCKTGAD-------------------SKVLCSCTTGYRLAPDQKSC 124
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 227 RHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQ 286
+ +D ++CE P L C + SY C C GFE G LD+ C C+Q
Sbjct: 43 KQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE----GKNCELDAT-CNIKNGRCKQ 97
Query: 287 ICNLLGGYK--CGCPEGYVRHPFSNEC 311
C K C C GY P C
Sbjct: 98 FCKTGADSKVLCSCTTGYRLAPDQKSC 124
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 29/118 (24%)
Query: 113 SLKKKKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LD 171
+ K F+ ++D D+C+ C G C + S+ C C GF+ G C LD
Sbjct: 35 TXKTNXFWKQYVDGDQCEPN-----PCLNGGLCKXDINSYECWCQVGFE----GKNCELD 85
Query: 172 QDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
+ +C++ C+T D C C GY LAPD + C
Sbjct: 86 ATCNIKNGRCKQFCKTGAD-------------------SKVLCSCTTGYRLAPDQKSC 124
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 230 IDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICN 289
+D ++CE P L C SY C C GFE G LD+ C C+Q C
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFE----GKNCELDA-TCNIKNGRCKQFCK 100
Query: 290 LLGGYK--CGCPEGYVRHPFSNEC 311
K C C GY P C
Sbjct: 101 TGADSKVLCSCTTGYRLAPDQKSC 124
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 183 EGCQTCEDINECLELSNQ---CAFRCHNVPGSFRCICPYGYALAPDGRHC 229
E EDI+EC + C CHN G F C C GY L + R C
Sbjct: 116 EAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 231 DINECEQFPG---LCAHTCTNTEGSYTCGCHPGFEL 263
DI+EC+ PG C H C N G + C C G+ L
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVL 158
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQ 469
DIDEC+ C C N +G F C C G+ L R C +Q
Sbjct: 123 DIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 150 GSFRCLCPRGFKLDRTGTF---CLDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCH 206
GSF C CP GF + D++E T C C + C E+S A+R
Sbjct: 21 GSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTP--NPCHNGGTC-EISE--AYRGD 75
Query: 207 NVPGSFRCICPYGYALAPDGRHCI-DINECEQFPGLCAHTCTNTEGSYTCGC 257
G + C CP G+ +G HC +INECE P CT+ +Y+C C
Sbjct: 76 TFIG-YVCKCPRGF----NGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 27/182 (14%)
Query: 141 KPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQ 200
K G + F+C+C G + + C +++EC ++ + C + +C+E +
Sbjct: 14 KNGQLVQMSNHFKCMCNEGL-VHLSENTCEEKNECKKETLGK----ACGEFGQCIENPDP 68
Query: 201 CAFRCHNVPGSFRCICPYGYALAPDG--------RHCIDINEC--EQFPGLCAHTCTNTE 250
++C C GY L D ++C + EC E + + C+
Sbjct: 69 AQVN------MYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAI 122
Query: 251 GSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNE 310
G +P E +G +C T +C+ N+ G YKC C EG+ N
Sbjct: 123 GKVP---NPEDEKKCTKTGETACQLKCNTDNEVCK---NVEGVYKCQCMEGFTFDKEKNV 176
Query: 311 CI 312
C+
Sbjct: 177 CL 178
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 24/112 (21%)
Query: 253 YTCGCHPGFELSSD-------GSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRH 305
Y CGC G+ L D C +S EC + + + C C G V +
Sbjct: 74 YKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIV------EYLSEIQSAGCSCAIGKVPN 127
Query: 306 PFSNECIDDNECARN---PCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFE 354
P D+ +C + C+ NT E C N G Y+C C +GF F+
Sbjct: 128 PE-----DEKKCTKTGETACQLKCNTDNEV---CKNVEGVYKCQCMEGFTFD 171
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
N C E + C+ C P RC CP G+ L D + CI
Sbjct: 579 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
N C E + C+ C P RC CP G+ L D + CI
Sbjct: 571 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 609
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 210 GSFRCICPYGYALAPDGRHC---IDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSD 266
GSF C C G+ +GR C + C G C H C G C C PG++L D
Sbjct: 33 GSFSCDCRSGW----EGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDD 88
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 192 NECLELSNQCAFRCHNVP-GSFRCICPYGYALAPDGRHC 229
NEC + C+ C VP G F C CP Y+L D R C
Sbjct: 266 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 192 NECLELSNQCAFRCHNVP-GSFRCICPYGYALAPDGRHC 229
NEC + C+ C VP G F C CP Y+L D R C
Sbjct: 264 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 302
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 192 NECLELSNQCAFRCHNVP-GSFRCICPYGYALAPDGRHC 229
NEC + C+ C VP G F C CP Y+L D R C
Sbjct: 271 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 309
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 210 GSFRCICPYGYALAPDGRHC---IDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSD 266
GSF C C G+ +GR C + C G C H C G C C PG++L D
Sbjct: 26 GSFSCDCRSGW----EGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDD 81
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 233 NEC--EQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATG 280
NEC E+ G C H C + SYTC C G+ L D C+ D+CA G
Sbjct: 3 NECHPERTDG-CQHFCLPGQESYTCSCAQGYRLGEDHK-QCVPHDQCACG 50
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 26/108 (24%)
Query: 123 FLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCR 182
+ D D+C+ + C G C + +G + C C GF+ F + C+ D
Sbjct: 1 YKDGDQCE-----TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF--TRKLCSLD---- 49
Query: 183 EGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
+ C CH S C C GY LA +G+ CI
Sbjct: 50 ---------------NGDCDQFCHEEQASVVCSCARGYTLADNGKACI 82
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 26/108 (24%)
Query: 123 FLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCR 182
+ D D+C+ + C G C + +G + C C GF+ F + C+ D
Sbjct: 1 YKDGDQCE-----TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF--TRKLCSLD---- 49
Query: 183 EGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
+ C CH S C C GY LA +G+ CI
Sbjct: 50 ---------------NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 82
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGR 227
NECL+ + C+ C+++ + C+CP G+ L R
Sbjct: 46 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 81
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 30/108 (27%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D D+C+ + C G C + +G + C C GF EG
Sbjct: 1 DGDQCE-----TSPCQNQGKCKDGLGEYTCTCLEGF----------------------EG 33
Query: 185 CQTCEDINECL-ELSN-QCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
+ CE L L N C CH S C C GY LA +G+ CI
Sbjct: 34 -KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 80
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 26/106 (24%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D D+C+ + C G C + +G + C C GF+ F + C+ D
Sbjct: 2 DGDQCE-----TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF--TRKLCSLD------ 48
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
+ C CH S C C GY LA +G+ CI
Sbjct: 49 -------------NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 81
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 26/106 (24%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D D+C+ + C G C + +G + C C GF+ F + C+ D
Sbjct: 1 DGDQCE-----TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF--TRKLCSLD------ 47
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
+ C CH S C C GY LA +G+ CI
Sbjct: 48 -------------NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 80
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 26/106 (24%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D D+C+ + C G C +G + C C GF+ F + C+ D
Sbjct: 2 DGDQCE-----TSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELF--TRKLCSLD------ 48
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
+ C CH S C C GY LA +G+ CI
Sbjct: 49 -------------NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 81
>pdb|2K2S|B Chain B, Structure Of The Mic1-GldMIC6-Egf Complex From Toxoplasma
Gondii
pdb|2K2T|A Chain A, Epidermal Growth Factor-Like Domain 2 From Toxoplasma
Gondii Microneme Protein 6
Length = 61
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 243 AHTCTNTEGSYTCGCHPGFELSSDGSG--TCLDSDE 276
A TC T Y C C+ G+ +S DG+G TC+ E
Sbjct: 24 AGTCKETNSGYICRCNQGYRISLDGTGNVTCIVRQE 59
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 312 IDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQ 352
+D ++C NPC GG C + SY C CP GF+
Sbjct: 1 VDGDQCESNPCL--------NGGSCKDDINSYECWCPFGFE 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,950,175
Number of Sequences: 62578
Number of extensions: 646229
Number of successful extensions: 1775
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1024
Number of HSP's gapped (non-prelim): 555
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)