RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11799
(483 letters)
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 144 bits (364), Expect = 4e-41
Identities = 43/172 (25%), Positives = 62/172 (36%), Gaps = 13/172 (7%)
Query: 190 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNT 249
D+NECL+ + + C N PGS+ C CP + L P C+D
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG---NCYLDIRPRGD 58
Query: 250 EGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFS 308
G C G +S C + C EG+ +P +
Sbjct: 59 NGDTACSNEIGVGVSKA--SCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPIT 116
Query: 309 NECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLC 360
D +EC P +GGKC NT GS++C CP G+ ++C
Sbjct: 117 VILEDIDECQELPG-------LCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 133 bits (336), Expect = 3e-37
Identities = 42/189 (22%), Positives = 63/189 (33%), Gaps = 31/189 (16%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D++EC + ++ G C+NT GS+ C CP F+L+ T
Sbjct: 2 DVNECLDPTTCIS-----GNCVNTPGSYICDCPPDFELNPTRV----------------- 39
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAH 244
C D + R G C G ++ C + + P
Sbjct: 40 --GCVDTRSG---NCYLDIRPRGDNGDTACSNEIGVGVSKASCCC-SLGKAWGTPCEMCP 93
Query: 245 TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQ-QIC-NLLGGYKCGCPEGY 302
+E C GF + D DEC +CQ C N G ++C CP GY
Sbjct: 94 AVNTSEYKILCPGGEGFRPNPITV-ILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Query: 303 VRHPFSNEC 311
+ + C
Sbjct: 153 YLNEDTRVC 161
Score = 109 bits (274), Expect = 2e-28
Identities = 48/237 (20%), Positives = 64/237 (27%), Gaps = 78/237 (32%)
Query: 231 DINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-N 289
D+NEC + C NT GSY C C P FEL+ C+D+
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRV-GCVDTRSGNCY---LDIRPRG 57
Query: 290 LLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPD 349
G C G ++ C + PCE + C
Sbjct: 58 DNGDTACSNEIGVGVSK-ASCCCSLGKAWGTPCEMCPA--------VNTSEYKILC---- 104
Query: 350 GFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLY 409
G++
Sbjct: 105 -------------------------------------PGGEGFRPNPITV---------- 117
Query: 410 PGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
L DIDEC+E + G CINT GSF+C CP G+ L+ C
Sbjct: 118 ---------ILEDIDECQELPG----LCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 73.9 bits (182), Expect = 7e-16
Identities = 25/207 (12%), Positives = 36/207 (17%), Gaps = 78/207 (37%)
Query: 273 DSDECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGE 331
D +EC C N G Y C CP + +P C+D
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYL---------- 51
Query: 332 RGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSG 391
+ G C G
Sbjct: 52 -DIRPRGDNGDTAC-----------------------------------------SNEIG 69
Query: 392 YQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRC 451
C + + C + C
Sbjct: 70 VGVSKASCCC--------------------SLGKAWGTP-----CEMCPAVNTSEYKILC 104
Query: 452 LCPRGFKLDRTGTFCLDQDECTDDSKC 478
GF+ + D DEC +
Sbjct: 105 PGGEGFRPNPITVILEDIDECQELPGL 131
Score = 49.3 bits (118), Expect = 3e-07
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCR 479
D++EC + ++ G C+NT GS+ C CP F+L+ T C+D R
Sbjct: 2 DVNECLDPTTCIS-----GNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIR 54
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 117 bits (296), Expect = 1e-31
Identities = 46/149 (30%), Positives = 61/149 (40%), Gaps = 14/149 (9%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECT-----DDS 179
D+DEC+ G C N+ GSF C C LD T T C++ + T D
Sbjct: 3 DIDECESS------PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDG 56
Query: 180 KCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFP 239
+C ++C IC GY+ G C DI+ECE FP
Sbjct: 57 RCEININGATLKSQCCSSLGAAW-GSPCTLCQVDPICGKGYSRI-KGTQCEDIDECEVFP 114
Query: 240 GLCAH-TCTNTEGSYTCGCHPGFELSSDG 267
G+C + C NT GS+ C C G L + G
Sbjct: 115 GVCKNGLCVNTRGSFKCQCPSGMTLDATG 143
Score = 108 bits (271), Expect = 4e-28
Identities = 44/172 (25%), Positives = 59/172 (34%), Gaps = 27/172 (15%)
Query: 189 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTN 248
DI+EC S C N PGSF C C L P CI+ + TC
Sbjct: 2 ADIDECES-SPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKG---------TCWQ 51
Query: 249 TEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFS 308
T C + +C + L C +GY R +
Sbjct: 52 TVIDGRCEINING---------ATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGT 102
Query: 309 NECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLC 360
C D +EC P + G C NT GS++C CP G +A ++C
Sbjct: 103 Q-CEDIDECEVFPG-------VCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 87.4 bits (217), Expect = 1e-20
Identities = 49/195 (25%), Positives = 59/195 (30%), Gaps = 50/195 (25%)
Query: 273 DSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGER 332
D DEC + I N G + C C P CI+ +
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGT-------------- 48
Query: 333 GGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGY 392
C+ T RC C + SPC+ C GY
Sbjct: 49 ---CWQTVIDGRCEININGATLK--SQCCSSLGAAWGSPCTLC-------QVDPICGKGY 96
Query: 393 QRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCL 452
RI C DIDEC+ K G C+NT GSF+C
Sbjct: 97 SRIKGTQCE--------------------DIDECEVFPG----VCKNGLCVNTRGSFKCQ 132
Query: 453 CPRGFKLDRTGTFCL 467
CP G LD TG CL
Sbjct: 133 CPSGMTLDATGRICL 147
Score = 57.4 bits (139), Expect = 4e-10
Identities = 27/166 (16%), Positives = 41/166 (24%), Gaps = 52/166 (31%)
Query: 313 DDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPC 372
D +EC +PC G C N+ GS+ C C + +C + + C
Sbjct: 3 DIDECESSPC---------INGVCKNSPGSFICECSSESTLDPTKTICIE----TIKGTC 49
Query: 373 SFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEING 432
CE + C +
Sbjct: 50 WQTVI-----DGRCEININGATLKSQCC--------------------SSLGAA------ 78
Query: 433 VAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKC 478
T+ +C +G+ GT C D DEC
Sbjct: 79 -------WGSPCTLCQVDPICGKGYSRI-KGTQCEDIDECEVFPGV 116
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 111 bits (279), Expect = 8e-30
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 204 RCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFEL 263
H+ + + + NEC G C++ C + + Y C C GF+L
Sbjct: 5 HHHHPMSDYDIPTTENL----YFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQL 60
Query: 264 SSDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVRHP 306
+ C D DEC C Q+C NL GGYKC C EG+ P
Sbjct: 61 VAQ--RRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEEGFQLDP 101
Score = 109 bits (274), Expect = 4e-29
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 25/125 (20%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCA 202
+ M + Q NECL+ + C+
Sbjct: 4 HHHHHPMSDYDIPTTENLYF-----------------------QGAMGTNECLDNNGGCS 40
Query: 203 FRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFE 262
+ C+++ + C+CP G+ L C DI+EC+ P C+ C N EG Y C C GF+
Sbjct: 41 YVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 98
Query: 263 LSSDG 267
L
Sbjct: 99 LDPHT 103
Score = 63.9 bits (156), Expect = 8e-13
Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 34/137 (24%)
Query: 332 RGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSP--CSFGCTPLGISGFSCECP 389
+ + Y + F+ A+ CL + CS+ C L G+ C CP
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAMGTN-----ECLDNNGGCSYVCNDL-KIGYECLCP 55
Query: 390 SGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSF 449
G+Q + Q C DIDEC++ C C+N G +
Sbjct: 56 DGFQLVAQRRCE--------------------DIDECQDP----DTCS--QLCVNLEGGY 89
Query: 450 RCLCPRGFKLDRTGTFC 466
+C C GF+LD C
Sbjct: 90 KCQCEEGFQLDPHTKAC 106
Score = 47.3 bits (113), Expect = 5e-07
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 481
+EC + G + C + + CLCP GF+L C D DEC D C +
Sbjct: 28 GTNECLDNNGGCS-----YVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQL 81
Query: 482 C 482
C
Sbjct: 82 C 82
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 108 bits (272), Expect = 2e-28
Identities = 43/146 (29%), Positives = 57/146 (39%), Gaps = 22/146 (15%)
Query: 190 DINECLELSNQCAFRCHNVPGSFRCICPYGY-----ALAPDGRHCIDINECEQFPGLCAH 244
D C + C + + + C C G+ + C DINEC +
Sbjct: 1 DSRGC---ARWCP-QDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 245 ---TCTNTEGSYTCGCHPGFELSSDGS-------GTCLDSDECATGRHICQ--QIC-NLL 291
C NTEGSY C C PG+E S TC D DEC++G+H C +C N +
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116
Query: 292 GGYKCGCPEGYVRHPFSNECIDDNEC 317
G Y C C G+ D C
Sbjct: 117 GSYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 103 bits (258), Expect = 2e-26
Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 37/166 (22%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D C CP+ +C+N + C C GF
Sbjct: 1 DSRGCAR------WCPQDSSCVN---ATACRCNPGFSSF--------------SEIITTP 37
Query: 185 CQTCEDINECLELSNQC---AFRCHNVPGSFRCICPYGYALA--------PDGRHCIDIN 233
+TC+DINEC LS C N GS+ C+C GY C D++
Sbjct: 38 METCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVD 97
Query: 234 ECEQFPGLCAH--TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDEC 277
EC C C NT GSY+C C PG++ C
Sbjct: 98 ECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIP-NNQKDTVC 142
Score = 89.1 bits (221), Expect = 2e-21
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 15/114 (13%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D++EC C K C NT GS+ C+C G++ ++ E T
Sbjct: 43 DINEC--ATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENT-------- 92
Query: 185 CQTCEDINECLELSNQC--AFRCHNVPGSFRCICPYGYALAPDGRHCIDINECE 236
C+D++EC +QC + C N GS+ C C G+ + CE
Sbjct: 93 ---CQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
Score = 79.5 bits (196), Expect = 6e-18
Identities = 46/205 (22%), Positives = 61/205 (29%), Gaps = 68/205 (33%)
Query: 273 DSDECATGRHICQQICNLLGGYKCGCPEGY-----VRHPFSNECIDDNECARNPCEPSSN 327
DS CA C Q + + C C G+ + C D NECA S
Sbjct: 1 DSRGCA---RWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECA-----TLSK 52
Query: 328 TTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCE 387
+ + C+NT GSY C C G++ P S T S +C+
Sbjct: 53 VSCGKFSDCWNTEGSYDCVCSPGYE------------------PVSGAKTFKNESENTCQ 94
Query: 388 CPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMG 447
D+DEC G C C NT+G
Sbjct: 95 ----------------------------------DVDECSS---GQHQCDSSTVCFNTVG 117
Query: 448 SFRCLCPRGFKLDRTGTFCLDQDEC 472
S+ C C G+K C
Sbjct: 118 SYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 53.3 bits (128), Expect = 9e-09
Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 26/115 (22%)
Query: 372 CSFGCTPLG--ISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEE 429
C+ C ++ +C C G+ + DI+EC
Sbjct: 5 CARWCPQDSSCVNATACRCNPGFSSFS--------------EIITTPMETCDDINEC--A 48
Query: 430 INGVAVCPKPGTCINTMGSFRCLCPRGFKLDRT--------GTFCLDQDECTDDS 476
C K C NT GS+ C+C G++ C D DEC+
Sbjct: 49 TLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQ 103
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 98.9 bits (247), Expect = 1e-25
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 189 EDINECLELSNQCAF-RCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCT 247
+D++EC + C C N+PG F C CP GY + C DI+EC + +CA C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE--NMCAQLCV 58
Query: 248 NTEGSYTCGC--HPGFELSSDGSGTCLD 273
N G YTC C GF+L+ D +C
Sbjct: 59 NYPGGYTCYCDGKKGFKLAQDQK-SCEV 85
Score = 85.8 bits (213), Expect = 7e-21
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 231 DINECEQFPGLCA-HTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC- 288
D++EC P +C C N G + C C G+ + +C D DEC+ ++C Q+C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSK-SCEDIDECSE--NMCAQLCV 58
Query: 289 NLLGGYKCGC--PEGYVRHPFSNECIDDN 315
N GGY C C +G+ C +
Sbjct: 59 NYPGGYTCYCDGKKGFKLAQDQKSCEVVS 87
Score = 85.8 bits (213), Expect = 7e-21
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D+DEC + + C C N G F C CP G++ +
Sbjct: 2 DVDECSLKPSI---CG-TAVCKNIPGDFECECPEGYRYNLKSK----------------- 40
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCIC--PYGYALAPDGRHCIDIN 233
+CEDI+EC E N CA C N PG + C C G+ LA D + C ++
Sbjct: 41 --SCEDIDECSE--NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVVS 87
Score = 70.0 bits (172), Expect = 3e-15
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 273 DSDECATGRHIC-QQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTG 330
D DEC+ IC +C N+ G ++C CPEGY + S C D +EC+ N C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCA------- 54
Query: 331 ERGGKCFNTAGSYRCGC--PDGFQFEA 355
C N G Y C C GF+
Sbjct: 55 ---QLCVNYPGGYTCYCDGKKGFKLAQ 78
Score = 54.6 bits (132), Expect = 7e-10
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDD 475
D+DEC + + C C N G F C CP G++ + C D DEC+++
Sbjct: 2 DVDECSLKPSI---CG-TAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSEN 51
Score = 43.8 bits (104), Expect = 5e-06
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 313 DDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPC 372
D +EC+ P + C N G + C CP+G+++ + C + C + C
Sbjct: 2 DVDECSLKPSICGT-------AVCKNIPGDFECECPEGYRYNLKSKSCEDI-DECSENMC 53
Query: 373 SFGCTPLGISGFSCEC--PSGYQRIGQGH 399
+ C G++C C G++
Sbjct: 54 AQLCVNY-PGGYTCYCDGKKGFKLAQDQK 81
Score = 42.3 bits (100), Expect = 1e-05
Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 30/89 (33%)
Query: 383 GFSCECPSGYQRIGQGH-CLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGT 441
F CECP GY+ + C DIDEC E
Sbjct: 24 DFECECPEGYRYNLKSKSCE--------------------DIDECSEN-------MCAQL 56
Query: 442 CINTMGSFRCLC--PRGFKLDRTGTFCLD 468
C+N G + C C +GFKL + C
Sbjct: 57 CVNYPGGYTCYCDGKKGFKLAQDQKSCEV 85
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 97.7 bits (244), Expect = 3e-25
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 187 TCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTC 246
+ D++EC E +C N GS+RC CP+GY L G C+D +EC TC
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNGTC 58
Query: 247 TNTEGSYTCGCHPGFELSSDGSGTC 271
N G + C C GFE TC
Sbjct: 59 KNVIGGFECTCEEGFEP--GPMMTC 81
Score = 85.7 bits (213), Expect = 6e-21
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 229 CIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC 288
+D++EC++ C NT+GSY C C G+ L+ + C+D+DEC+ G C
Sbjct: 2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGN---ECVDTDECSVGNPCGNGTC 58
Query: 289 -NLLGGYKCGCPEGYVRHP 306
N++GG++C C EG+ P
Sbjct: 59 KNVIGGFECTCEEGFEPGP 77
Score = 70.3 bits (173), Expect = 2e-15
Identities = 34/105 (32%), Positives = 39/105 (37%), Gaps = 27/105 (25%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
DMDECKE K G CINT GS+RC CP G+ L
Sbjct: 4 DMDECKEPD-----VCKHGQCINTDGSYRCECPFGYILAGN------------------- 39
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
C D +EC + C NV G F C C G+ C
Sbjct: 40 --ECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPG-PMMTC 81
Score = 69.5 bits (171), Expect = 3e-15
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 270 TCLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNT 328
+ +D DEC C N G Y+C CP GY+ NEC+D +EC+ +
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSVGNPCGN--- 55
Query: 329 TGERGGKCFNTAGSYRCGCPDGFQ 352
G C N G + C C +GF+
Sbjct: 56 -----GTCKNVIGGFECTCEEGFE 74
Score = 51.8 bits (125), Expect = 6e-09
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 481
D+DECKE K G CINT GS+RC CP G+ L G C+D DEC+ + C G
Sbjct: 4 DMDECKEPD-----VCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSVGNPCGNG 56
Score = 45.7 bits (109), Expect = 9e-07
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 20/95 (21%)
Query: 311 CIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCT-----QLSS 365
+D +EC G+C NT GSYRC CP G+ C + +
Sbjct: 2 AVDMDECKEPDVCKH--------GQCINTDGSYRCECPFGYILAG--NECVDTDECSVGN 51
Query: 366 SCLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHC 400
C + C + I GF C C G++ C
Sbjct: 52 PC----GNGTCKNV-IGGFECTCEEGFEPGPMMTC 81
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 96.7 bits (241), Expect = 3e-24
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 189 EDINECLELSNQCAFRCHNV-PGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCT 247
E ++ C C ++C + S+ C+C G+A P H + C C
Sbjct: 2 EPVDPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHR---CQMFCNQTACPADCD 56
Query: 248 NTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVRHP 306
+C C G+ L D C D DEC G C +C NL G ++C C
Sbjct: 57 PN-TQASCECPEGYIL--DDGFICTDIDECENG-GFCSGVCHNLPGTFECICGPDSALAG 112
Score = 92.8 bits (231), Expect = 5e-23
Identities = 29/124 (23%), Positives = 39/124 (31%), Gaps = 19/124 (15%)
Query: 231 DINECEQFPGLCAHTCTN-TEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICN 289
++ C + C + C + SY C C GF C C C+
Sbjct: 3 PVDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQ----TACPADCD 56
Query: 290 LLGGYKCGCPEGYVRHPFSNECIDDNECARN-PCEPSSNTTGERGGKCFNTAGSYRCGCP 348
C CPEGY+ C D +EC C G C N G++ C C
Sbjct: 57 PNTQASCECPEGYILDD-GFICTDIDECENGGFCS----------GVCHNLPGTFECICG 105
Query: 349 DGFQ 352
Sbjct: 106 PDSA 109
Score = 92.0 bits (229), Expect = 1e-22
Identities = 35/148 (23%), Positives = 44/148 (29%), Gaps = 33/148 (22%)
Query: 125 DMDECKEEINGVAVCPKPGTCIN-TMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCRE 183
+D C C S+ C+C GF
Sbjct: 3 PVDPCFR-------ANCEYQCQPLDQTSYLCVCAEGFAPIP------------------H 37
Query: 184 GCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCA 243
C+ C C C CP GY L DG C DI+ECE G C+
Sbjct: 38 EPHRCQMFCNQ----TACPADCDP-NTQASCECPEGYILD-DGFICTDIDECEN-GGFCS 90
Query: 244 HTCTNTEGSYTCGCHPGFELSSDGSGTC 271
C N G++ C C P L+ C
Sbjct: 91 GVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 67.0 bits (164), Expect = 8e-14
Identities = 36/149 (24%), Positives = 45/149 (30%), Gaps = 41/149 (27%)
Query: 313 DDNECARNPCEPSSNTTGERGGKCFN-TAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSP 371
+ C R CE +C SY C C +GF Q+ + +
Sbjct: 3 PVDPCFRANCE----------YQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQ--TA 50
Query: 372 CSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEIN 431
C C P SCECP GY C DIDEC+
Sbjct: 51 CPADCDPNT--QASCECPEGYILDDGFIC--------------------TDIDECENG-- 86
Query: 432 GVAVCPKPGTCINTMGSFRCLCPRGFKLD 460
G C N G+F C+C L
Sbjct: 87 ----GFCSGVCHNLPGTFECICGPDSALA 111
Score = 52.8 bits (127), Expect = 8e-09
Identities = 27/116 (23%), Positives = 36/116 (31%), Gaps = 29/116 (25%)
Query: 367 CLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDEC 426
C + C + C PL + + C C G+ P + C
Sbjct: 7 CFRANCEYQCQPLDQTSYLCVCAEGFA------------------------PIPHEPHRC 42
Query: 427 KEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGC 482
+ N P C C CP G+ LD G C D DEC + C C
Sbjct: 43 QMFCNQ---TACPADCDPN-TQASCECPEGYILD-DGFICTDIDECENGGFCSGVC 93
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 95.4 bits (238), Expect = 3e-24
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 190 DINECLELSNQCA-FRCHNVPGSFRCICPYGYAL-APDGRHCIDINECEQFPGLCA-HTC 246
DI+EC + C +C N PG F C C GY ++C+DI+EC++ P LC C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 247 TNTEGSYTCGCHPGFELSSDGSGTCL 272
NTEGSY C C PG +LS + S C+
Sbjct: 62 HNTEGSYRCECPPGHQLSPNIS-ACI 86
Score = 88.1 bits (219), Expect = 1e-21
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 231 DINECEQFPGLCAH-TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQ-QIC 288
DI+EC P LC C NT G + C C G+E C+D DEC +C+ +C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 289 -NLLGGYKCGCPEGYVRHPFSNECI 312
N G Y+C CP G+ P + CI
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISACI 86
Score = 83.1 bits (206), Expect = 7e-20
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 23/107 (21%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D+DEC+ + C G C+NT G F C C G++
Sbjct: 2 DIDECRISPDL---CG-RGQCVNTPGDFECKCDEGYESGFMMM----------------- 40
Query: 185 CQTCEDINECLELSNQCAF-RCHNVPGSFRCICPYGYALAPDGRHCI 230
+ C DI+EC C CHN GS+RC CP G+ L+P+ CI
Sbjct: 41 -KNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 51.5 bits (124), Expect = 8e-09
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRT-GTFCLDQDECTDDSKC 478
DIDEC+ + C G C+NT G F C C G++ C+D DEC D
Sbjct: 2 DIDECRISPDL---CG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLL 55
Score = 48.1 bits (115), Expect = 2e-07
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 26/87 (29%)
Query: 383 GFSCECPSGYQ--RIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPG 440
F C+C GY+ + +C+ DIDEC+ + + G
Sbjct: 24 DFECKCDEGYESGFMMMKNCM--------------------DIDECQRDPL----LCRGG 59
Query: 441 TCINTMGSFRCLCPRGFKLDRTGTFCL 467
C NT GS+RC CP G +L + C+
Sbjct: 60 VCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 42.3 bits (100), Expect = 2e-05
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Query: 313 DDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQL-------CTQLSS 365
D +EC +P G+C NT G + C C +G++ + C +
Sbjct: 2 DIDECRISPDLCGR-------GQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPL 54
Query: 366 SCLSSPC--SFGCTPLGISGFSCECPSGYQRIGQGH 399
C C + G + CECP G+Q
Sbjct: 55 LCRGGVCHNTEG-------SYRCECPPGHQLSPNIS 83
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 97.0 bits (240), Expect = 1e-23
Identities = 35/186 (18%), Positives = 52/186 (27%), Gaps = 15/186 (8%)
Query: 139 CPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELS 198
G + F C+C G T C + +EC ++ C E
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLSENT-CEEXNECXXET----------LGXACGEFG 60
Query: 199 NQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECE-QFPGLCAHTCTNTEGSYTCGC 257
+ C C GY L D G C + S C C
Sbjct: 61 QCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSC 120
Query: 258 HPGFELSSDGSGTCLDSDECATGRHIC---QQICNLLGGYKCGCPEGYVRHPFSNECIDD 314
G + + C + E A + N+ G Y C C EG+ N C+
Sbjct: 121 AIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGP 180
Query: 315 NECARN 320
+ +
Sbjct: 181 HHHHHH 186
Score = 62.7 bits (151), Expect = 1e-11
Identities = 32/205 (15%), Positives = 44/205 (21%), Gaps = 27/205 (13%)
Query: 273 DSDECATGRHIC--QQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCE-PSSNT 328
+++ A + + C C EG V N C + NEC
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLS-ENTCEEXNECXXETLGXACGEF 59
Query: 329 TGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISG-FSCE 387
Y CGC +G+ + L C
Sbjct: 60 GQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCS 119
Query: 388 CPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMG 447
C G + T E + C N G
Sbjct: 120 CAIGXVPNPEDEXXCTX------------------TGETAC---QLXCNTDNEVCXNVEG 158
Query: 448 SFRCLCPRGFKLDRTGTFCLDQDEC 472
+ C C GF D CL
Sbjct: 159 VYXCQCMEGFTFDXEXNVCLGPHHH 183
Score = 39.2 bits (90), Expect = 0.001
Identities = 19/154 (12%), Positives = 34/154 (22%), Gaps = 32/154 (20%)
Query: 334 GKCFNTAGSYRCGCPDGFQFEAALQLC--------TQLSSSCLSSPCSFGCTPLGISGFS 385
G+ + + C C +G + T + C P ++ +
Sbjct: 16 GQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYX 75
Query: 386 CECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINT 445
C C GY + + N ++
Sbjct: 76 CGCIEGYTLXEDTCV-----------------------LDVCQYXNCGESGECIVEYLSE 112
Query: 446 MGSFRCLCPRGFKLDRT-GTFCLDQDECTDDSKC 478
+ S C C G + C E C
Sbjct: 113 IQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXC 146
Score = 29.2 bits (64), Expect = 2.1
Identities = 13/94 (13%), Positives = 22/94 (23%), Gaps = 9/94 (9%)
Query: 398 GHCLATISS---GLYPGFRSYERPNLGDIDECKEEINGVAVCPKP----GTCINTMGSFR 450
G + + G + +EC E G A + +
Sbjct: 16 GQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYX 75
Query: 451 CLCPRGFKLDRTGTFCLDQDE--CTDDSKCREGC 482
C C G+ L C + +C
Sbjct: 76 CGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEY 109
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 83.8 bits (208), Expect = 2e-19
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 25/145 (17%)
Query: 187 TCEDINECLELSNQCA--FRCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGLCA 243
+ +D++EC +N C +C N GSF C C GY G C ID+NEC P C
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNP--CQ 54
Query: 244 H--TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQ--IC-NLLGGYKCGC 298
+ TC + G + C C PG+E G +++DECA+ C C + + ++C C
Sbjct: 55 NDATCLDQIGEFQCICMPGYE----GVHCEVNTDECAS--SPCLHNGRCLDKINEFQCEC 108
Query: 299 PEGYVRHPFSNEC-IDDNECARNPC 322
P G+ + C +D +
Sbjct: 109 PTGF----TGHLCQVDLHHILDAQK 129
Score = 74.2 bits (183), Expect = 3e-16
Identities = 50/166 (30%), Positives = 66/166 (39%), Gaps = 42/166 (25%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
D+DEC N C G CINT+GSF C C +G+ TG C
Sbjct: 4 DVDECSLGAN---PCEHAGKCINTLGSFECQCLQGY----TGPRCE-------------- 42
Query: 185 CQTCEDINECLELSNQCA--FRCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGL 241
D+NEC +SN C C + G F+CIC GY G HC ++ +EC P
Sbjct: 43 ----IDVNEC--VSNPCQNDATCLDQIGEFQCICMPGYE----GVHCEVNTDECASSP-- 90
Query: 242 CAH--TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQ 285
C H C + + C C GF G +D + +
Sbjct: 91 CLHNGRCLDKINEFQCECPTGFT----GHLCQVDLHHILDAQKMVW 132
Score = 62.6 bits (153), Expect = 4e-12
Identities = 49/174 (28%), Positives = 64/174 (36%), Gaps = 45/174 (25%)
Query: 312 IDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSP 371
+D+ NPCE GKC NT GS+ C C G+ C + C+S+P
Sbjct: 5 VDECSLGANPCE--------HAGKCINTLGSFECQCLQGYTG----PRCEIDVNECVSNP 52
Query: 372 CSFGCTPL-GISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEI 430
C T L I F C C GY+ G HC + DEC
Sbjct: 53 CQNDATCLDQIGEFQCICMPGYE--GV-HCEV-------------------NTDECASS- 89
Query: 431 NGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTDDSKCREGCQ 483
C G C++ + F+C CP GF TG C +D D K +
Sbjct: 90 ----PCLHNGRCLDKINEFQCECPTGF----TGHLCQVDLHHILDAQKMVWNHR 135
Score = 39.1 bits (92), Expect = 6e-04
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDEC 472
D+DEC N C G CINT+GSF C C +G+ TG C +D +EC
Sbjct: 4 DVDECSLGAN---PCEHAGKCINTLGSFECQCLQGY----TGPRCEIDVNEC 48
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 88.3 bits (218), Expect = 4e-19
Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 1/124 (0%)
Query: 190 DINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNT 249
C + CA +C + G+ +C C GY L DGR C D+NEC + G C+ CTN+
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAE-EGYCSQGCTNS 60
Query: 250 EGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSN 309
EG++ C C G+EL D E I +L
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 310 ECID 313
Sbjct: 121 LDFH 124
Score = 77.1 bits (189), Expect = 2e-15
Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 3/131 (2%)
Query: 231 DINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-N 289
C G CA C G+ C CH G+ L+ DG TC D +ECA C Q C N
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGR-TCQDVNECAEE-GYCSQGCTN 59
Query: 290 LLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPD 349
G ++C C GY P C + + T
Sbjct: 60 SEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAI 119
Query: 350 GFQFEAALQLC 360
F +L
Sbjct: 120 ALDFHHRRELV 130
Score = 60.9 bits (147), Expect = 3e-10
Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 25/147 (17%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
+ C G C C G+ +C C G++L G C D +EC ++ C +G
Sbjct: 2 GEENCNVNNGG---CA--QKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG 56
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAH 244
C N G+F+C C GY L PD R C +
Sbjct: 57 --------------------CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRI 96
Query: 245 TCTNTEGSYTCGCHPGFELSSDGSGTC 271
+ L + +
Sbjct: 97 DIRQVLPHRSEYTLLLNNLENAIALDF 123
Score = 50.9 bits (121), Expect = 5e-07
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 313 DDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPC 372
+ C N + C G+ +C C G++ + C ++ C
Sbjct: 2 GEENCNVNNGGCAQK--------CQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYC 53
Query: 373 SFGCTPLGISGFSCECPSGYQRIGQGHC 400
S GCT F C C +GY+
Sbjct: 54 SQGCTN-SEGAFQCWCEAGYELRPDRRS 80
Score = 45.9 bits (108), Expect = 2e-05
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 481
+ C G C C G+ +C C G++L G C D +EC ++ C +G
Sbjct: 2 GEENCNVNNGG---CA--QKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG 56
Query: 482 CQ 483
C
Sbjct: 57 CT 58
Score = 42.8 bits (100), Expect = 2e-04
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 217 PYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTC 271
P R N C G C H C + +YTC C GF + C
Sbjct: 332 PMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINS--HAC 384
Score = 39.4 bits (91), Expect = 0.002
Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 26/112 (23%)
Query: 372 CSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEIN 431
C+ C + C C +GY+ G D++EC EE
Sbjct: 13 CAQKCQMIRG-AVQCTCHTGYRLTEDGRTCQ-------------------DVNECAEE-- 50
Query: 432 GVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQ 483
C C N+ G+F+C C G++L C
Sbjct: 51 --GYCS--QGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI 98
Score = 35.9 bits (82), Expect = 0.023
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 201 CAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
C C ++ C CP G+ + C
Sbjct: 357 CTHLCLPSGQNYTCACPTGFRKI-NSHACA 385
Score = 30.9 bits (69), Expect = 1.1
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 258 HPGFELSSDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNE 316
P + + C C +C Y C CP G+ I+ +
Sbjct: 331 FPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGF-------RKINSHA 383
Query: 317 CAR 319
CA+
Sbjct: 384 CAQ 386
Score = 29.7 bits (66), Expect = 2.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 336 CFNTAGSYRCGCPDGFQ 352
C + +Y C CP GF+
Sbjct: 361 CLPSGQNYTCACPTGFR 377
Score = 28.2 bits (62), Expect = 5.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 371 PCSFGCTPLGISGFSCECPSGYQRIGQGHC 400
C+ C P G ++C CP+G+++I C
Sbjct: 356 GCTHLCLPSG-QNYTCACPTGFRKINSHAC 384
Score = 28.2 bits (62), Expect = 5.9
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 145 CINTMGSFRCLCPRGFKLDRTGT 167
C+ + ++ C CP GF+ +
Sbjct: 361 CLPSGQNYTCACPTGFRKINSHA 383
Score = 28.2 bits (62), Expect = 5.9
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 442 CINTMGSFRCLCPRGFKLDRTGT 464
C+ + ++ C CP GF+ +
Sbjct: 361 CLPSGQNYTCACPTGFRKINSHA 383
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 81.0 bits (200), Expect = 7e-18
Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 25/182 (13%)
Query: 175 CTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDIN 233
D K E +D ++C Q +C + G + C C G+ G++C +
Sbjct: 26 FEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTR 81
Query: 234 E-CEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC---N 289
+ C G C C + S C C G+ L+ +G + C +
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG----KACIPTGP--YPCGKQTLERR 135
Query: 290 LLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPD 349
+ G P S + +P E + + +
Sbjct: 136 KRSVAQATSSSGE--APDSITWKPYDAADLDPTEN--------PFDLLDFNQTQPERGDN 185
Query: 350 GF 351
Sbjct: 186 NL 187
Score = 79.8 bits (197), Expect = 2e-17
Identities = 28/194 (14%), Positives = 42/194 (21%), Gaps = 24/194 (12%)
Query: 205 CHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELS 264
+ D ++CE P C + G YTC C GFE
Sbjct: 18 SYEEAREVFEDSDKTNE---FWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK 74
Query: 265 SDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCE 323
+ C+ C Q C C C GY C PC
Sbjct: 75 NC---ELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC---IPTGPYPC- 127
Query: 324 PSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFG--CTPLGI 381
+ + G + + + + P
Sbjct: 128 -------GKQTLERRKRSVAQATSSSGEAPD---SITWKPYDAADLDPTENPFDLLDFNQ 177
Query: 382 SGFSCECPSGYQRI 395
+ + RI
Sbjct: 178 T-QPERGDNNLTRI 190
Score = 64.8 bits (158), Expect = 2e-12
Identities = 27/163 (16%), Positives = 34/163 (20%), Gaps = 28/163 (17%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCA 202
G C + +G + C C GF G C C + C
Sbjct: 54 GKCKDGLGEYTCTCLEGF----EGKNC-----------------ELFTRKLCSLDNGDCD 92
Query: 203 FRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFE 262
CH S C C GY LA +G +P G
Sbjct: 93 QFCHEEQNSVVCSCARGYTLADNG---KACIPTGPYPCGKQTLERRKRSVAQATSSSGE- 148
Query: 263 LSSDGSGTCLDSDECATGRHICQQICNLLGG-YKCGCPEGYVR 304
+ S T D R
Sbjct: 149 --APDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLTR 189
Score = 54.8 bits (132), Expect = 6e-09
Identities = 28/191 (14%), Positives = 40/191 (20%), Gaps = 48/191 (25%)
Query: 288 CNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGC 347
+ F N+ D ++C +PC+ GKC + G Y C C
Sbjct: 19 YEEAREVFEDSDKTNE---FWNKYKDGDQCETSPCQN--------QGKCKDGLGEYTCTC 67
Query: 348 PDGFQFEAALQLC-TQLSSSCLSSPCSFG--CTPLGISGFSCECPSGYQRIGQGHCLATI 404
+GF+ + C C C + C C GY
Sbjct: 68 LEGFE----GKNCELFTRKLCSLDNGDCDQFCHE-EQNSVVCSCARGYT---LADNGK-- 117
Query: 405 SSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGT 464
C K + G D
Sbjct: 118 -----------------ACIPTGP-----YPCGKQTLERRKRSVAQATSSSGEAPDSIT- 154
Query: 465 FCLDQDECTDD 475
D D
Sbjct: 155 -WKPYDAADLD 164
Score = 40.5 bits (95), Expect = 4e-04
Identities = 26/161 (16%), Positives = 41/161 (25%), Gaps = 46/161 (28%)
Query: 314 DNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCS 373
+ EC C + A +F + C +SPC
Sbjct: 9 ERECMEETC-------------SYEEAREVFEDSDKTNEF----WNKYKDGDQCETSPCQ 51
Query: 374 FG--CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEIN 431
C G+ ++C C G++ G+ +C + N
Sbjct: 52 NQGKCKD-GLGEYTCTCLEGFE--GK-NCEL-------------------FTRKLCSLDN 88
Query: 432 GVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDEC 472
C S C C RG+ L G C+
Sbjct: 89 ----GDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 125
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 84.1 bits (207), Expect = 9e-18
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
NECL+ + C+ C+++ + C+CP G+ L R C DI+EC+ P C+ C N EG
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQD-PDTCSQLCVNLEG 58
Query: 252 SYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNEC 311
Y C C GF+L C A + + +
Sbjct: 59 GYKCQCEEGFQLDPHT-KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVAL 117
Query: 312 IDD 314
+
Sbjct: 118 DTE 120
Score = 78.0 bits (191), Expect = 9e-16
Identities = 38/143 (26%), Positives = 49/143 (34%), Gaps = 4/143 (2%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLL 291
NEC G C+H C + + Y C C GF+L + C D DEC C Q+C NL
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ--RRCEDIDECQDP-DTCSQLCVNLE 57
Query: 292 GGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGF 351
GGYKC C EG+ P + C A + T+
Sbjct: 58 GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVAL 117
Query: 352 QFEAALQLCTQLSSSCLSSPCSF 374
E A S +
Sbjct: 118 DTEVASNRIYWSDLSQRMICSTQ 140
Score = 64.5 bits (156), Expect = 2e-11
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 21/128 (16%)
Query: 144 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAF 203
C + + CLCP GF+L C D DEC D + C+
Sbjct: 13 VCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQD--------------------PDTCSQ 51
Query: 204 RCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFEL 263
C N+ G ++C C G+ L P + C + H + L
Sbjct: 52 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
Query: 264 SSDGSGTC 271
+ +
Sbjct: 112 RNVVALDT 119
Score = 59.1 bits (142), Expect = 1e-09
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 12/139 (8%)
Query: 275 DECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERG 333
+EC C +C +L GY+C CP+G+ C D +EC
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDP---------DTCS 50
Query: 334 GKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQ 393
C N G Y+C C +GFQ + + C S + ++ E S
Sbjct: 51 QLCVNLEGGYKCQCEEGFQLDPHTKACKA-VGSIAYLFFTNRHEVRKMTLDRSEYTSLIP 109
Query: 394 RIGQGHCLATISSGLYPGF 412
+ L T + +
Sbjct: 110 NLRNVVALDTEVASNRIYW 128
Score = 45.2 bits (106), Expect = 3e-05
Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 27/108 (25%)
Query: 372 CSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEIN 431
CS C L G+ C CP G+Q + Q C DIDEC++
Sbjct: 10 CSHVCNDL-KIGYECLCPDGFQLVAQRRCE--------------------DIDECQDP-- 46
Query: 432 GVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCR 479
C C+N G ++C C GF+LD C
Sbjct: 47 --DTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTN 90
Score = 42.1 bits (98), Expect = 3e-04
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 441 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQ 483
C + + CLCP GF+L C D DEC D C + C
Sbjct: 13 VCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCV 54
Score = 34.4 bits (78), Expect = 0.066
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 217 PYGYALAPDGRHCIDINECEQFP---GLCAHTC------TNTEGSYTCGCHPGFELSSDG 267
P L + +N CE+ G C + C +TC C G L+ D
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 393
Query: 268 SGTCL 272
+CL
Sbjct: 394 R-SCL 397
Score = 33.7 bits (76), Expect = 0.13
Identities = 13/90 (14%), Positives = 22/90 (24%), Gaps = 10/90 (11%)
Query: 232 INECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC--- 288
I + G + S G C + CQ +C
Sbjct: 313 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWC---ERTTLSNGGCQYLCLPA 369
Query: 289 ----NLLGGYKCGCPEGYVRHPFSNECIDD 314
+ C CP+G + C+ +
Sbjct: 370 PQINPHSPKFTCACPDGMLLARDMRSCLTE 399
Score = 33.7 bits (76), Expect = 0.13
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 134 NGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINE 193
+ + + + L P L T + C + GCQ
Sbjct: 311 EAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQ-----YL 365
Query: 194 CLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
CL A + + F C CP G LA D R C+
Sbjct: 366 CLP-----APQINPHSPKFTCACPDGMLLARDMRSCL 397
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 72.8 bits (179), Expect = 6e-16
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 179 SKCREGCQTCEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHCIDINECE 236
SK +G C + ++ C C + GSF C C G+ + + C
Sbjct: 1 SKHVDG-DQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG-RFCQREVSFLNCS 58
Query: 237 QFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGR 281
G C H C G C C PG++L D C + + GR
Sbjct: 59 LDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLL-QCHPAVKFPCGR 102
Score = 64.0 bits (156), Expect = 7e-13
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 225 DGRHCIDINECEQFPGLCAH--TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRH 282
DG C+ + LC TC + GS++C C G+E + C+
Sbjct: 5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ--REVSFLNCSLDNG 62
Query: 283 ICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPC 322
C C +G +C C GY +C + + PC
Sbjct: 63 GCTHYCLEEVGWRRCSCAPGYKLGDDLLQC---HPAVKFPC 100
Score = 62.8 bits (153), Expect = 2e-12
Identities = 30/115 (26%), Positives = 37/115 (32%), Gaps = 25/115 (21%)
Query: 125 DMDECKEEINGVAVCPKP----GTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSK 180
D D+C + C GTCI+ +GSF C C G+ G F
Sbjct: 5 DGDQC-LVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW----EGRF------------ 47
Query: 181 CREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 235
CQ C + C C G RC C GY L D C +
Sbjct: 48 ----CQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
Score = 49.7 bits (119), Expect = 7e-08
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 22/112 (19%)
Query: 270 TCLDSDECAT--GRHICQQIC-------NLLGGYKCGCPEGYVRHPFSNECIDDNECARN 320
+D D+C H C +C + +G + C C G+ F + C+ +
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW-EGRFCQREVSFLNCSLD 60
Query: 321 PCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPC 372
C G RC C G++ L + PC
Sbjct: 61 NG--------GCTHYCLEEVGWRRCSCAPGYK----LGDDLLQCHPAVKFPC 100
Score = 46.6 bits (111), Expect = 8e-07
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 309 NECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCL 368
++ +D ++C P E + G C + GS+ C C G++ + + L+ S
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLD 60
Query: 369 SSPCSFGCTPLGISGFSCECPSGYQ 393
+ C+ C + C C GY+
Sbjct: 61 NGGCTHYCLE-EVGWRRCSCAPGYK 84
Score = 34.7 bits (80), Expect = 0.013
Identities = 22/106 (20%), Positives = 31/106 (29%), Gaps = 25/106 (23%)
Query: 367 CLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDEC 426
C S C G GI FSC+C SG++ + C
Sbjct: 18 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREV--------------------SFLNC 57
Query: 427 KEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDEC 472
+ C+ +G RC C G+KL C +
Sbjct: 58 S-----LDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 76.6 bits (188), Expect = 5e-15
Identities = 47/246 (19%), Positives = 65/246 (26%), Gaps = 41/246 (16%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTM-GSFRCL-CPRGFKLDRTGTFCLDQDECTDDSKCR 182
D D C C C + GS+ C CP GF + GT C D DEC
Sbjct: 2 DPDGCLSN-----PCFPGAQCSSFPDGSWSCGFCPVGFLGN--GTHCEDLDECALVP--- 51
Query: 183 EGCQTCEDINECLELSNQCAFRCHNVPGSFRCI-CPYGY-----------ALAPDGRHCI 230
+ C S RC N F C+ CP Y A + + C
Sbjct: 52 DICF-----------STSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCE 100
Query: 231 DINECEQFPGLCAH--TCTN----TEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHIC 284
N C+ C C ++ Y C C G+ G D D +C
Sbjct: 101 PENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVC 160
Query: 285 QQICNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYR 344
++ + C + + FN +
Sbjct: 161 ATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADY 220
Query: 345 CGCPDG 350
G
Sbjct: 221 DKDEVG 226
Score = 38.1 bits (88), Expect = 0.006
Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 50/232 (21%)
Query: 125 DMDECKEEINGVAVCPKPGTCIN----TMGSFRCLCPRGFKLD-RTGTFCLDQDECTDDS 179
+ CK++ + C K CI + ++C C G+ D D D + +
Sbjct: 101 PENPCKDKTHN---CHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLN 157
Query: 180 ---------------------KCREGCQTCEDINECLELSNQC-----AFRCHNVPGSFR 213
+E + C + + C + +
Sbjct: 158 LVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQ 217
Query: 214 CICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLD 273
+ C+ P + +T+ G + DG +
Sbjct: 218 ADYDKDE----------VGDRCDNCPYVHNPAQIDTDN---NGEGDACSVDIDGDDVFNE 264
Query: 274 SDECATGRHICQ--QICNLLGGYKCGCPEGYVRHP-FSNECIDDNECARNPC 322
D C + Q + +G + CP + + + ++C N
Sbjct: 265 RDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNED 316
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 65.4 bits (160), Expect = 4e-13
Identities = 21/140 (15%), Positives = 39/140 (27%), Gaps = 36/140 (25%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCA 202
+ E +D ++C ++ C
Sbjct: 16 TCSYEEAREVFEDSDKTN----------------------EFWNKYKDGDQCE--TSPCQ 51
Query: 203 F--RCHNVPGSFRCICPYGYALAPDGRHC-IDINE-CEQFPGLCAHTCTNTEGSYTCGCH 258
+C + G + C C G+ G++C + + C G C C + S C C
Sbjct: 52 NQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 107
Query: 259 PGFELSSDGSGTCLDSDECA 278
G+ L+ +G
Sbjct: 108 RGYTLADNG----KACIPTG 123
Score = 50.8 bits (122), Expect = 5e-08
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 19/108 (17%)
Query: 288 CNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGC 347
+ F N+ D ++C +PC + GKC + G Y C C
Sbjct: 19 YEEAREVFEDSDKTNE---FWNKYKDGDQCETSPC--------QNQGKCKDGLGEYTCTC 67
Query: 348 PDGFQFEAALQLC-TQLSSSCLSSPCSFG--CTPLGISGFSCECPSGY 392
+GF+ + C C C + C C GY
Sbjct: 68 LEGFEG----KNCELFTRKLCSLDNGDCDQFCHE-EQNSVVCSCARGY 110
Score = 50.0 bits (120), Expect = 1e-07
Identities = 23/98 (23%), Positives = 29/98 (29%), Gaps = 26/98 (26%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSN-QC 201
G C + +G + C C GF G C + L N C
Sbjct: 54 GKCKDGLGEYTCTCLEGF----EGKNC------------------ELFTRKLCSLDNGDC 91
Query: 202 AFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFP 239
CH S C C GY LA +G +P
Sbjct: 92 DQFCHEEQNSVVCSCARGYTLADNG---KACIPTGPYP 126
Score = 43.4 bits (103), Expect = 2e-05
Identities = 26/160 (16%), Positives = 39/160 (24%), Gaps = 49/160 (30%)
Query: 315 NECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSF 374
EC C + A +F + C +SPC
Sbjct: 10 RECMEETC-------------SYEEAREVFEDSDKTNEF----WNKYKDGDQCETSPCQN 52
Query: 375 G--CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEING 432
C G+ ++C C G++ G+ +C + N
Sbjct: 53 QGKCKD-GLGEYTCTCLEGFE--GK-NCEL-------------------FTRKLCSLDN- 88
Query: 433 VAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDEC 472
C S C C RG+ L G C
Sbjct: 89 ---GDCDQFCHEEQNSVVCSCARGYTLADNGKAC---IPT 122
Score = 34.2 bits (79), Expect = 0.029
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 36/120 (30%)
Query: 363 LSSSCLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGD 422
L C+ CS+ + + + Y+ D
Sbjct: 8 LERECMEETCSYE----EAREVFEDSDKTNE-----------------FWNKYK-----D 41
Query: 423 IDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTDDSKCREG 481
D+C+ + C G C + +G + C C GF G C L +
Sbjct: 42 GDQCE-----TSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCD 92
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 62.7 bits (153), Expect = 4e-12
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 17/111 (15%)
Query: 175 CTDDSKCREGCQTCEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-ID 231
D + + + D ++C S+ C C + S+ C C + GR+C
Sbjct: 31 FKDAERTKLFWISYSDGDQC--ASSPCQNGGSCKDQLQSYICFCLPAFE----GRNCETH 84
Query: 232 INECEQFP---GLCAHTCTNTEGS-YTCGCHPGFELSSDGSGTCLDSDECA 278
++ G C C++ G+ +C CH G+ L +DG +
Sbjct: 85 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADG----VSCTPTV 131
Score = 53.1 bits (128), Expect = 1e-08
Identities = 29/136 (21%), Positives = 39/136 (28%), Gaps = 22/136 (16%)
Query: 193 ECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGLCAHTCTNTEG 251
EC E QC+F D ++C P +C +
Sbjct: 16 ECKE--EQCSFEE----AREIFKDAERT---KLFWISYSDGDQCASSPCQNGGSCKDQLQ 66
Query: 252 SYTCGCHPGFELSSDGSGTCLDSDECATGRHI---CQQIC--NLLGGYKCGCPEGYVRHP 306
SY C C P FE + D+ + C+Q C + C C EGY
Sbjct: 67 SYICFCLPAFEGRNCE----THKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA 122
Query: 307 FSNECIDDNECARNPC 322
C PC
Sbjct: 123 DGVSC---TPTVEYPC 135
Score = 51.9 bits (125), Expect = 2e-08
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 17/92 (18%)
Query: 307 FSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSS 366
F D ++CA +PC+ GG C + SY C C F+ + C
Sbjct: 40 FWISYSDGDQCASSPCQ--------NGGSCKDQLQSYICFCLPAFE----GRNCETHKDD 87
Query: 367 CLSSPCSFG-----CTPLGISGFSCECPSGYQ 393
L G C+ + SC C GY
Sbjct: 88 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYS 119
Score = 48.9 bits (117), Expect = 3e-07
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 31/106 (29%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQ-- 200
G+C + + S+ C C F G C ++ L N+
Sbjct: 59 GSCKDQLQSYICFCLPAF----EGRNCE------------------THKDDQLICVNENG 96
Query: 201 -CAFRCHNVPGS-FRCICPYGYALAPDGRHCIDINECEQFPGLCAH 244
C C + G+ C C GY+L DG + ++P C
Sbjct: 97 GCEQYCSDHTGTKRSCRCHEGYSLLADG---VSCTPTVEYP--CGK 137
Score = 33.5 bits (77), Expect = 0.058
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTDDS 476
D D+C + C G+C + + S+ C C F G C +D+
Sbjct: 46 DGDQCAS-----SPCQNGGSCKDQLQSYICFCLPAF----EGRNCETHKDDQLICV 92
Score = 28.8 bits (65), Expect = 2.2
Identities = 25/149 (16%), Positives = 39/149 (26%), Gaps = 41/149 (27%)
Query: 336 CFNTAGSYRCGC------PDGFQFEAALQLCTQLSSSCLSSPCSFG--CTPLGISGFSCE 387
C S+ F + C SSPC G C + + C
Sbjct: 17 CKEEQCSFEEAREIFKDAERTKLF----WISYSDGDQCASSPCQNGGSCKD-QLQSYICF 71
Query: 388 CPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMG 447
C ++ G+ +C D+ +N C C + G
Sbjct: 72 CLPAFE--GR-NCET-------------------HKDDQLICVNENGGCE--QYCSDHTG 107
Query: 448 S-FRCLCPRGFKLDRTGTFCLDQDECTDD 475
+ C C G+ L G C +
Sbjct: 108 TKRSCRCHEGYSLLADGVSC---TPTVEY 133
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 61.3 bits (149), Expect = 1e-11
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 34/135 (25%)
Query: 143 GTCINTM--GSFRCLCPRGFKLDRTGTFC-LDQDECTDDSKCREGCQTCEDINECLELSN 199
G C+ + GSF C CP GF T C + +D+ C N
Sbjct: 12 GICLPGLADGSFSCECPDGF----TDPNCSSVVEVASDEE-------EPTSAGPCT--PN 58
Query: 200 QCA---------FRCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGLCAH--TCT 247
C + + C CP G+ G HC +INECE P C + CT
Sbjct: 59 PCHNGGTCEISEAYRGDTFIGYVCKCPRGFN----GIHCQHNINECEVEP--CKNGGICT 112
Query: 248 NTEGSYTCGCHPGFE 262
+ +Y+C C F
Sbjct: 113 DLVANYSCECPGEFM 127
Score = 56.6 bits (137), Expect = 5e-10
Identities = 43/180 (23%), Positives = 58/180 (32%), Gaps = 62/180 (34%)
Query: 316 ECARNPCEPSSNTTGERGGKCFN--TAGSYRCGCPDGFQ--------FEAALQLCTQLSS 365
C NPCE GG C GS+ C CPDGF A+ + +
Sbjct: 2 ICDPNPCE--------NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAG 53
Query: 366 SCLSSPC--------SFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYER 417
C +PC S G+ C+CP G+ G HC
Sbjct: 54 PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFN--GI-HCQH--------------- 95
Query: 418 PNLGDIDECKEE--INGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTD 474
+I+EC+ E NG G C + + ++ C CP F G C
Sbjct: 96 ----NINECEVEPCKNG-------GICTDLVANYSCECPGEF----MGRNCQYKGGGHHH 140
Score = 51.3 bits (123), Expect = 4e-08
Identities = 32/139 (23%), Positives = 45/139 (32%), Gaps = 35/139 (25%)
Query: 234 ECEQFPGLCAH--TCTN--TEGSYTCGCHPGFE--------LSSDGSGTCLDSDEC---- 277
C+ P C + C +GS++C C GF + + C
Sbjct: 2 ICDPNP--CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59
Query: 278 ----ATGRHICQQICNLLGGYKCGCPEGYVRHPFSNEC-IDDNECARNPCEPSSNTTGER 332
T + GY C CP G+ C + NEC PC +
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFN----GIHCQHNINECEVEPC--------KN 107
Query: 333 GGKCFNTAGSYRCGCPDGF 351
GG C + +Y C CP F
Sbjct: 108 GGICTDLVANYSCECPGEF 126
Score = 32.8 bits (75), Expect = 0.087
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 5/36 (13%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTD 177
G C + + ++ C CP F G C
Sbjct: 109 GICTDLVANYSCECPGEF----MGRNCQYKGGGHHH 140
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 61.2 bits (149), Expect = 2e-11
Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 29/139 (20%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCA 202
CI SF + + K E + D ++C N C
Sbjct: 16 RECIEEKCSFEEAR----------------EVFENTEKTNEFWKQYVDGDQC--EPNPCL 57
Query: 203 F--RCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGLCAHTCTNTEGSYTCGCHP 259
C + S+ C C G+ G++C +D + T + C C
Sbjct: 58 NGGLCKDDINSYECWCQVGFE----GKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTT 113
Query: 260 GFELSSDGSGTCLDSDECA 278
G+ L+ D
Sbjct: 114 GYRLAPDQ----KSCKPAV 128
Score = 60.1 bits (146), Expect = 4e-11
Identities = 31/145 (21%), Positives = 38/145 (26%), Gaps = 21/145 (14%)
Query: 205 CHNVPGSFRCICPYGYALAP--DGRHC-IDINECEQFPGLCAHTCTNTEGSYTCGCHPGF 261
C SF + +D ++CE P L C + SY C C GF
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGF 77
Query: 262 ELSSDGSGTCLDSDECATGRHICQQIC--NLLGGYKCGCPEGYVRHPFSNECIDDNECAR 319
E C C C+Q C C C GY P C
Sbjct: 78 EGK-----NCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC---KPAVP 129
Query: 320 NPCEPSSNTTGERGGKCFNTAGSYR 344
PC R + R
Sbjct: 130 FPC--------GRVSVSHSPTTLTR 146
Score = 52.0 bits (125), Expect = 3e-08
Identities = 28/131 (21%), Positives = 41/131 (31%), Gaps = 32/131 (24%)
Query: 119 FYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTD 177
F+ ++D D+C+ C G C + + S+ C C GF G C LD
Sbjct: 41 FWKQYVDGDQCEP-----NPCLNGGLCKDDINSYECWCQVGF----EGKNCELDATCNIK 91
Query: 178 DSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQ 237
+ +C++ C C C GY LAPD
Sbjct: 92 NGRCKQFC-------------------KTGADSKVLCSCTTGYRLAPDQ---KSCKPAVP 129
Query: 238 FPGLCAHTCTN 248
FP +
Sbjct: 130 FPCGRVSVSHS 140
Score = 51.6 bits (124), Expect = 3e-08
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 296 CGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEA 355
+ F + +D ++C NPC GG C + SY C C GF+
Sbjct: 33 ENTEKTNE---FWKQYVDGDQCEPNPCL--------NGGLCKDDINSYECWCQVGFEG-- 79
Query: 356 ALQLCTQLSSSCLSSPCSFG-CTPLGISGFSCECPSGYQ 393
+ C ++ + + C S C C +GY+
Sbjct: 80 --KNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYR 116
Score = 48.5 bits (116), Expect = 4e-07
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 28/145 (19%)
Query: 236 EQFPGLCAHTCTNTEGSYTCGCH------PGFELSSDGSGTCLDSDECATGRHICQQIC- 288
E G C + S+ E +D D+C + +C
Sbjct: 8 EFVRGNLERECIEEKCSFEEAREVFENTEKTNE----FWKQYVDGDQCEPNPCLNGGLCK 63
Query: 289 NLLGGYKCGCPEGYVRHPFSNEC-IDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGC 347
+ + Y+C C G+ C +D +N + C C
Sbjct: 64 DDINSYECWCQVGFE----GKNCELDATCNIKNGR--------CKQFCKTGADSKVLCSC 111
Query: 348 PDGFQFEAALQLCTQLSSSCLSSPC 372
G++ L + + PC
Sbjct: 112 TTGYR----LAPDQKSCKPAVPFPC 132
Score = 34.6 bits (80), Expect = 0.020
Identities = 19/144 (13%), Positives = 30/144 (20%), Gaps = 41/144 (28%)
Query: 336 CFNTAGSYRCGC------PDGFQFEAALQLCTQLSSSCLSSPCSFGCTPL-GISGFSCEC 388
C S+ +F C +PC G I+ + C C
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEFWK----QYVDGDQCEPNPCLNGGLCKDDINSYECWC 73
Query: 389 PSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGS 448
G++ +C D + K
Sbjct: 74 QVGFEGK---NCEL-------------------DATCNIK-----NGRCKQFCKTGADSK 106
Query: 449 FRCLCPRGFKLDRTGTFCLDQDEC 472
C C G++L C
Sbjct: 107 VLCSCTTGYRLAPDQKSC---KPA 127
Score = 34.6 bits (80), Expect = 0.026
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTDDSKCRE 480
D D+C+ C G C + + S+ C C GF G C LD + +C++
Sbjct: 47 DGDQCEP-----NPCLNGGLCKDDINSYECWCQVGF----EGKNCELDATCNIKNGRCKQ 97
Query: 481 GC 482
C
Sbjct: 98 FC 99
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 54.4 bits (131), Expect = 4e-10
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 230 IDINECEQFPG--------LCAHTCTNTEGSYTCGCHPGFELSSDG 267
+D++EC C H C N G Y C C PG+EL D
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDR 47
Score = 52.1 bits (125), Expect = 2e-09
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 189 EDINECLELSN--------QCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
D++EC S QC CHN G + C C GY L D C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 41.7 bits (98), Expect = 1e-05
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 422 DIDECKEEINGVAVCPKPG---TCINTMGSFRCLCPRGFKLDRTGTFC 466
D+DEC P+P C N +G + C C G++L C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 40.1 bits (94), Expect = 4e-05
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 125 DMDECKEEINGVAVCPKPG---TCINTMGSFRCLCPRGFKLDRTGTFC 169
D+DEC P+P C N +G + C C G++L C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 37.1 bits (86), Expect = 4e-04
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 312 IDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQ 352
+D +ECA + + C N G Y C C G++
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
Score = 35.5 bits (82), Expect = 0.002
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 273 DSDECAT--------GRHICQQIC-NLLGGYKCGCPEGYVRHP 306
D DECA+ + CQ +C N +GGY C C GY
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE 45
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 61.0 bits (147), Expect = 5e-10
Identities = 44/253 (17%), Positives = 72/253 (28%), Gaps = 22/253 (8%)
Query: 133 INGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDIN 192
I + C C + + C + + C + +C C+
Sbjct: 158 IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGP 217
Query: 193 ECLELS----------NQCAFRCHN---VPGSFRCICPYGYALAPDGRHCIDINECEQFP 239
+C + S F+C + + GS +C Y D C+++ CE
Sbjct: 218 DCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPN 277
Query: 240 GLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCP 299
H+ C SD ++EC C +CN L
Sbjct: 278 KFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLC 337
Query: 300 EGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQL 359
+ C D +EC C N G Y+C C +GFQ + +
Sbjct: 338 PDGFQLVAQRRCEDIDECQDPDTCS---------QLCVNLEGGYKCQCEEGFQLDPHTKA 388
Query: 360 CTQLSSSCLSSPC 372
C + S
Sbjct: 389 CKAVGSIAYLFFT 401
Score = 50.6 bits (120), Expect = 8e-07
Identities = 43/210 (20%), Positives = 59/210 (28%), Gaps = 5/210 (2%)
Query: 154 CLCPRGFKLDRTGTFCLDQDECTDDSKCREG--CQTCEDINECLELSNQCAFRCHNVPGS 211
C G +C + C++ C ++ C + +
Sbjct: 231 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLD 290
Query: 212 FRCICPYGYALAPD-GRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGT 270
C D NEC G C+H C + + Y C C GF+L
Sbjct: 291 KVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL--VAQRR 348
Query: 271 CLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTG 330
C D DEC Q NL GGYKC C EG+ P + C A
Sbjct: 349 CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRK 408
Query: 331 ERGGKCFNTAGSYRCGCPDGFQFEAALQLC 360
+ T+ E A
Sbjct: 409 MTLDRSEYTSLIPNLRNVVALDTEVASNRI 438
Score = 41.4 bits (96), Expect = 6e-04
Identities = 66/342 (19%), Positives = 93/342 (27%), Gaps = 58/342 (16%)
Query: 154 CLCPRGFKLDRTGTFCLDQDECTDDS--------KCREGCQTCEDINECLELSNQC--AF 203
C G + R C +C D S C C + C+ C
Sbjct: 111 FRCHDGKCISRQFV-CDSDRDCLDGSDEASCPVLTCGPASFQCNS-STCIPQLWACDNDP 168
Query: 204 RCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFEL 263
C + + C Y D C E G C H+ +G C E
Sbjct: 169 DCEDGSDEWPQRCRGLYVFQGDSSPCSA-FEFHCLSGECIHSSWRCDGGPDCKDKSDEE- 226
Query: 264 SSDGSGTCL-DSDECATGRHI-CQQICNLLGGYKCGCPEGYVRHPFSNECIDDNECARNP 321
+ TC D +C+ G I + C+ K E + E + +C
Sbjct: 227 -NCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGE 285
Query: 322 CEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGI 381
C C D + C + CS C L I
Sbjct: 286 CITLDKVCNMA------------RDCRDWSDEPI--KECGTNECLDNNGGCSHVCNDLKI 331
Query: 382 SGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGT 441
G+ C CP G+Q + Q C DIDEC++
Sbjct: 332 -GYECLCPDGFQLVAQRRC--------------------EDIDECQDP------DTCSQL 364
Query: 442 CINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQ 483
C+N G ++C C GF+LD C
Sbjct: 365 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV 406
Score = 39.8 bits (92), Expect = 0.002
Identities = 68/373 (18%), Positives = 99/373 (26%), Gaps = 58/373 (15%)
Query: 159 GFKLDRTGTFCLDQDECTDDSKCREGCQTCED------------INECLELSNQCAFRCH 206
G+KL T L +C C+D EC + S++ C
Sbjct: 2 GWKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCL 61
Query: 207 NV---PGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTE-GSYTCGCHPGFE 262
+V G F C + P C +C+ G C CH G
Sbjct: 62 SVTCKSGDFSCGGRVNRCI-PQFWRCDGQVDCD--NGSDEQGCPPKTCSQDEFRCHDGKC 118
Query: 263 LSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPC 322
+S C +C G G C P C +D +C
Sbjct: 119 IS--RQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSST-CIPQLWACDNDPDCEDGSD 175
Query: 323 EPSSNTTGERGGKCFNT---AGSYRCG----------------CPDG------------- 350
E G + ++ A + C C D
Sbjct: 176 EWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRP 235
Query: 351 FQFEAALQLCTQLSSSC-LSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLY 409
+F+ + C S C C +G + + G C+ +
Sbjct: 236 DEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECIT--LDKVC 293
Query: 410 PGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQ 469
R + I EC C + + CLCP GF+L C D
Sbjct: 294 NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDI 352
Query: 470 DECTDDSKCREGC 482
DEC D C + C
Sbjct: 353 DECQDPDTCSQLC 365
Score = 34.8 bits (79), Expect = 0.063
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 204 RCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCH 258
+ + F C CP G LA D R C+ E + + H
Sbjct: 683 QINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQH 737
Score = 31.7 bits (71), Expect = 0.59
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 21/114 (18%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
+ EC C + + CLCP GF+L
Sbjct: 306 PIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV--------------------A 345
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQF 238
+ CEDI+EC + + C+ C N+ G ++C C G+ L P + C +
Sbjct: 346 QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 398
Score = 29.0 bits (64), Expect = 3.9
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 217 PYGYALAPDGRHCIDINECEQFP---GLCAHTC------TNTEGSYTCGCHPGFELSSDG 267
P L + +N CE+ G C + C +TC C G L+ D
Sbjct: 646 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 705
Query: 268 SGTCLDSDECA 278
+CL E A
Sbjct: 706 R-SCLTEAEAA 715
Score = 29.0 bits (64), Expect = 4.7
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 275 DECATGRHICQQIC-------NLLGGYKCGCPEGYVRHPFSNECIDDNECA 318
+ CQ +C + C CP+G + C+ + E A
Sbjct: 665 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAA 715
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 52.0 bits (125), Expect = 2e-09
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 233 NECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQ 286
C G C C + S C C G+ L+ +G C+ + G+ ++
Sbjct: 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK-ACIPTGPYPCGKQTLER 54
Score = 44.7 bits (106), Expect = 1e-06
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 201 CAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 235
C CH S C C GY LA +G+ CI
Sbjct: 11 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 34.7 bits (80), Expect = 0.004
Identities = 10/45 (22%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 275 DECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECA 318
C+ C Q C C C GY CI
Sbjct: 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 46
Score = 34.3 bits (79), Expect = 0.005
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 144 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDEC 175
C S C C RG+ L G C+
Sbjct: 14 FCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 34.3 bits (79), Expect = 0.005
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 441 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDEC 472
C S C C RG+ L G C+
Sbjct: 14 FCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 26.2 bits (58), Expect = 3.6
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 336 CFNTAGSYRCGCPDGFQ 352
C S C C G+
Sbjct: 15 CHEEQNSVVCSCARGYT 31
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 52.8 bits (127), Expect = 2e-08
Identities = 36/186 (19%), Positives = 53/186 (28%), Gaps = 41/186 (22%)
Query: 210 GSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSG 269
G C Y G C C H + + C G+ G
Sbjct: 15 GRSAVTCDDYYY----GFGCN--KFCRPRDDFFGHYACD--QNGNKTCMEGW------MG 60
Query: 270 TCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTT 329
+ C G C C C G+ C ++C +P
Sbjct: 61 PECNRAICRQGCSPKHGSCK--LPGDCRCQYGWQ----GLYC---DKCIPHPGC------ 105
Query: 330 GERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLS-SPCSFG--CTPLGISGFSC 386
G C ++C C + + LC + + C + PC G C+ G + C
Sbjct: 106 --VHGICNE---PWQCLCETNWGGQ----LCDKDLNYCGTHQPCLNGGTCSNTGPDKYQC 156
Query: 387 ECPSGY 392
CP GY
Sbjct: 157 SCPEGY 162
Score = 46.2 bits (110), Expect = 4e-06
Identities = 40/216 (18%), Positives = 55/216 (25%), Gaps = 63/216 (29%)
Query: 139 CPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELS 198
G+ G C + G C C G C+
Sbjct: 7 HHHHGSIE---GRSAVTCDDYY----YGFGC--NKFCRPRD-DFFGHYACDQNGN----- 51
Query: 199 NQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCH 258
C G+ G C + C Q +C C C
Sbjct: 52 ---------------KTCMEGWM----GPEC-NRAICRQGCSPKHGSCKL---PGDCRCQ 88
Query: 259 PGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNEC-IDDNEC 317
G++ C D+C H ++C C + C D N C
Sbjct: 89 YGWQ-----GLYC---DKCIP--HPGCVHGICNEPWQCLCETNW----GGQLCDKDLNYC 134
Query: 318 A-RNPCEPSSNTTGERGGKCFNTA-GSYRCGCPDGF 351
PC GG C NT Y+C CP+G+
Sbjct: 135 GTHQPC--------LNGGTCSNTGPDKYQCSCPEGY 162
Score = 43.5 bits (103), Expect = 3e-05
Identities = 32/138 (23%), Positives = 46/138 (33%), Gaps = 41/138 (29%)
Query: 129 CKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTC 188
C I PK G+C C C G+ G +C D+C C G C
Sbjct: 63 CNRAICRQGCSPKHGSCKL---PGDCRCQYGW----QGLYC---DKCIPHPGCVHG--IC 110
Query: 189 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-IDINECEQFPGLCAH--T 245
+ ++C+C + G+ C D+N C C + T
Sbjct: 111 NE--------------------PWQCLCETNWG----GQLCDKDLNYCGT-HQPCLNGGT 145
Query: 246 CTNTE-GSYTCGCHPGFE 262
C+NT Y C C G+
Sbjct: 146 CSNTGPDKYQCSCPEGYS 163
Score = 35.4 bits (82), Expect = 0.015
Identities = 42/235 (17%), Positives = 64/235 (27%), Gaps = 80/235 (34%)
Query: 242 CAHTCTNT---EGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGC 298
+H + EG C + G + G + C Q C
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYY--YGFGCNKFCRPRDDFFGHYACDQ------NGNKTC 54
Query: 299 PEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQ 358
EG++ EC R C + + G C C C G+Q
Sbjct: 55 MEGWM----------GPECNRAICRQGCS---PKHGSCKL---PGDCRCQYGWQGL---- 94
Query: 359 LCTQLSSSCLSSPCSFG--CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYE 416
C + C+ P C + C C + + C
Sbjct: 95 YCDK----CIPHPGCVHGICN----EPWQCLCETNWGGQ---LCDK-------------- 129
Query: 417 RPNLGDIDECKEEINGVAVCPKP----GTCINT-MGSFRCLCPRGFKLDRTGTFC 466
D++ C +P GTC NT ++C CP G+ +G C
Sbjct: 130 -----DLNYC--------GTHQPCLNGGTCSNTGPDKYQCSCPEGY----SGPNC 167
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 53.9 bits (130), Expect = 4e-08
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 190 DINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC-IDINEC-EQFPGLCAHT 245
+ C+ S C C + + C C GY +G +C + NEC + C H
Sbjct: 4 GGSPCI--SQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHF 57
Query: 246 CTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHIC 284
C + SYTC C G+ L D C+ D+CA G
Sbjct: 58 CLPGQESYTCSCAQGYRLGEDHK-QCVPHDQCACGVLTS 95
Score = 48.6 bits (116), Expect = 2e-06
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 16/92 (17%)
Query: 312 IDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLS-- 369
+ C PC G C ++ Y C C G++ C + C
Sbjct: 3 KGGSPCISQPCLH--------NGSCQDSIWGYTCTCSPGYEG----SNCELAKNECHPER 50
Query: 370 -SPCSFGCTPLGISGFSCECPSGYQRIGQGHC 400
C C P G ++C C GY+
Sbjct: 51 TDGCQHFCLP-GQESYTCSCAQGYRLGEDHKQ 81
Score = 43.9 bits (104), Expect = 6e-05
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 139 CPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTDDSKCREGCQTCEDINECLEL 197
C G+C +++ + C C G+ G+ C L ++EC E
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNEC------------------HPER 50
Query: 198 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 235
++ C C S+ C C GY L D + C+ ++C
Sbjct: 51 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 88
Score = 40.5 bits (95), Expect = 7e-04
Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 29/117 (24%)
Query: 367 CLSSPCSFG--CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDID 424
C+S PC C I G++C C GY+ + E +
Sbjct: 8 CISQPCLHNGSCQD-SIWGYTCTCSPGYE------------------GSNCEL----AKN 44
Query: 425 ECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 481
EC E C+ S+ C C +G++L C+ D+C E
Sbjct: 45 ECHPERTD----GCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK 97
Score = 39.3 bits (92), Expect = 0.002
Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 19/103 (18%)
Query: 273 DSDECATGRHICQQ--IC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTT 329
C + C C + + GY C C GY + + C E T
Sbjct: 4 GGSPCIS--QPCLHNGSCQDSIWGYTCTCSPGY----------EGSNCELAKNECHPERT 51
Query: 330 GERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPC 372
C SY C C G+ L + C
Sbjct: 52 DGCQHFCLPGQESYTCSCAQGY----RLGEDHKQCVPHDQCAC 90
Score = 30.4 bits (69), Expect = 1.1
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC-LDQDECTDDS--KC 478
C + C G+C +++ + C C G+ G+ C L ++EC + C
Sbjct: 4 GGSPCISQP-----CLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGC 54
Query: 479 REGC 482
+ C
Sbjct: 55 QHFC 58
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 49.0 bits (117), Expect = 5e-08
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 228 HCIDINECEQFPGLCAHTCTNTEGS-YTCGCHPGFELSSDGSGTCLDSDECATGRHICQQ 286
H D C G C C++ G+ +C CH G+ L +DG +C + E G+ +
Sbjct: 1 HKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV-SCTPTVEYPCGKIPILE 59
Query: 287 ICN 289
N
Sbjct: 60 KRN 62
Score = 40.2 bits (94), Expect = 5e-05
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 188 CEDINECLELSNQCAFRCHNVPGS-FRCICPYGYALAPDGRHCIDINE--CEQFPGLCAH 244
+D C+ + C C + G+ C C GY+L DG C E C + P L
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKR 61
Query: 245 TCTNTEG 251
+ +G
Sbjct: 62 NASKPQG 68
Score = 36.7 bits (85), Expect = 0.001
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 271 CLDSDECATGRHICQQICNLL--GGYKCGCPEGYVRHPFSNECIDDNE--CARNPCEPSS 326
D C C+Q C+ C C EGY C E C + P
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKR 61
Query: 327 NTTGERG 333
N + +G
Sbjct: 62 NASKPQG 68
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 54.4 bits (130), Expect = 5e-08
Identities = 43/227 (18%), Positives = 72/227 (31%), Gaps = 15/227 (6%)
Query: 133 INGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDIN 192
I + C C + + C + + C + +C C+
Sbjct: 140 IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGP 199
Query: 193 ECLELSNQCA----------FRCHN---VPGSFRCICPYGYALAPDGRHCIDINECEQFP 239
+C + S++ F+C + + GS +C Y D C+++ CE
Sbjct: 200 DCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPN 259
Query: 240 GLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGC 298
H+ C SD ++EC C +C +L GY+C C
Sbjct: 260 KFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLC 319
Query: 299 PEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRC 345
P+G+ + C D +EC E G KC G
Sbjct: 320 PDGF-QLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLD 365
Score = 35.9 bits (82), Expect = 0.029
Identities = 57/315 (18%), Positives = 83/315 (26%), Gaps = 49/315 (15%)
Query: 171 DQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
D+ C + C + C D +C+ C + GS CP
Sbjct: 79 DEQGCPPKT-CSQDEFRCHD-GKCISRQFVCDSDRDCLDGSDEASCPVLTC--GPASFQC 134
Query: 231 DINECEQFPGLCAHT--CTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQ-QI 287
+ + C C + C + + C + D S C +G I
Sbjct: 135 NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWR 194
Query: 288 CNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGC 347
C+ GG C + D+ +C+ C S +C C
Sbjct: 195 CD--GGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSR-------QC-----DREYDC 240
Query: 348 PDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSG 407
D S + C +C SG C
Sbjct: 241 KDM--------------SDEVGCVNVTLCEGPN----KFKCHSGECITLDKVC------- 275
Query: 408 LYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCL 467
R + I EC C + + CLCP GF+L C
Sbjct: 276 --NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CE 332
Query: 468 DQDECTDDSKCREGC 482
D DEC D C + C
Sbjct: 333 DIDECQDPDTCSQLC 347
Score = 32.5 bits (73), Expect = 0.32
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 202 AFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 235
A + + F C CP G LA D R C+ E
Sbjct: 663 APQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 696
Score = 29.8 bits (66), Expect = 2.1
Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 8/131 (6%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
+ EC C + + CLCP GF+L C D DEC D C +
Sbjct: 288 PIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQL 346
Query: 185 CQTCEDINE-------CLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQ 237
C E + L+ + ++ F + D + +
Sbjct: 347 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLR 406
Query: 238 FPGLCAHTCTN 248
+
Sbjct: 407 NVVALDTEVAS 417
Score = 29.8 bits (66), Expect = 2.2
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 217 PYGYALAPDGRHCIDINECEQFP---GLCAHTC------TNTEGSYTCGCHPGFELSSDG 267
P L +N CE+ G C + C +TC C G L+ D
Sbjct: 628 PEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 687
Query: 268 SGTCLDSDECAT 279
+CL E A
Sbjct: 688 R-SCLTEAEAAV 698
Score = 29.8 bits (66), Expect = 2.7
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 275 DECATGRHICQQIC-------NLLGGYKCGCPEGYVRHPFSNECIDDNECA 318
+ CQ +C + C CP+G + C+ + E A
Sbjct: 647 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAA 697
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 46.6 bits (111), Expect = 2e-07
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 235 CEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHI 283
C G C C C C G+ L D +C+ ++ G+
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSK-SCVSTERFPCGKFT 48
Score = 42.0 bits (99), Expect = 8e-06
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 201 CAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 235
C C RC C +GY L D + C+
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 33.9 bits (78), Expect = 0.007
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 145 CINTMGSFRCLCPRGFKLDRTGTFCLDQDEC 175
C RC C G+ L C+ +
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 33.9 bits (78), Expect = 0.007
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 442 CINTMGSFRCLCPRGFKLDRTGTFCLDQDEC 472
C RC C G+ L C+ +
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 30.4 bits (69), Expect = 0.11
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 277 CATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECA 318
C+ C Q C +C C GYV S C+
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP 43
Score = 26.6 bits (59), Expect = 2.6
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 336 CFNTAGSYRCGCPDGFQ 352
C RC C G+
Sbjct: 12 CREERSEVRCSCAHGYV 28
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 47.9 bits (113), Expect = 4e-06
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 232 INECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDG-SGTCLDSDECATGRHICQQICNL 290
+NEC + G C+ CTN+EG++ C C G+EL D S L + + L
Sbjct: 1 VNECAE-EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVL 59
Query: 291 LGGYKCGCPEGYVRHPFSNEC 311
+ + + + +
Sbjct: 60 PHRSEYTLLLNNLENAIALDF 80
Score = 46.8 bits (110), Expect = 8e-06
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 191 INECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQF 238
+NEC E C+ C N G+F+C C GY L PD R C +
Sbjct: 1 VNECAE-EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVL 47
Score = 41.0 bits (95), Expect = 6e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 227 RHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGS 268
R N C G C H C + +YTC C GF + +
Sbjct: 299 RQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHA 340
Score = 39.1 bits (90), Expect = 0.002
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 423 IDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 481
++EC EE C + C N+ G+F+C C G++L C
Sbjct: 1 VNECAEE----GYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRI 53
Score = 38.3 bits (88), Expect = 0.004
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 127 DECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQ 186
+EC EE C + C N+ G+F+C C G++L C
Sbjct: 2 NECAEE----GYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI 55
Query: 187 TCEDIN 192
+
Sbjct: 56 RQVLPH 61
Score = 35.6 bits (81), Expect = 0.031
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 275 DECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECA 318
+ECA C Q C N G ++C C GY P C
Sbjct: 2 NECAE-EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEP 45
Score = 35.2 bits (80), Expect = 0.036
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 186 QTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPG 240
+ N C + + C C ++ C CP G+ +++ F G
Sbjct: 299 RQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACALEVL----FQG 349
Score = 30.2 bits (67), Expect = 1.3
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 145 CINTMGSFRCLCPRGFKLDRTGTFCLD 171
C+ + ++ C CP GF+ + L+
Sbjct: 318 CLPSGQNYTCACPTGFRKINSHACALE 344
Score = 30.2 bits (67), Expect = 1.3
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 442 CINTMGSFRCLCPRGFKLDRTGTFCLD 468
C+ + ++ C CP GF+ + L+
Sbjct: 318 CLPSGQNYTCACPTGFRKINSHACALE 344
Score = 30.2 bits (67), Expect = 1.6
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 15/64 (23%)
Query: 309 NECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCL 368
NEC ++ C++ C N+ G+++C C G++ + C L +
Sbjct: 2 NECAEEGYCSQ---------------GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPV 46
Query: 369 SSPC 372
Sbjct: 47 LLFA 50
Score = 28.7 bits (63), Expect = 4.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 336 CFNTAGSYRCGCPDGFQ 352
C + +Y C CP GF+
Sbjct: 318 CLPSGQNYTCACPTGFR 334
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 47.5 bits (113), Expect = 4e-06
Identities = 54/316 (17%), Positives = 76/316 (24%), Gaps = 90/316 (28%)
Query: 172 QDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCID 231
+ + C + + ++ + + C
Sbjct: 93 LGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAI----FFKTC-Q 147
Query: 232 INECEQFPGLCAH--TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICN 289
EC PG C + C C C GF L + C +C
Sbjct: 148 QAEC---PGGCRNGGFCNE---RRICECPDGF--HGPHCEKALCTPRCM-NGGLC----- 193
Query: 290 LLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPD 349
+ C CP G+ + C D C GG CF +C CP
Sbjct: 194 -VTPGFCICPPGF----YGVNC--DKANCSTTCFN--------GGTCFYP---GKCICPP 235
Query: 350 GFQFEAALQLCTQLSSSCLSSPCSFGCTPLG--ISGFSCECPSGYQRIGQGHCLATISSG 407
G + C S C C G I C+C GYQ G C
Sbjct: 236 GLE-----------GEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQ--GD-LCSK----- 276
Query: 408 LYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC- 466
+ E C GTC +C C G+ G C
Sbjct: 277 --------------PVCEP--------GCGAHGTCHE---PNKCQCQEGW----HGRHCN 307
Query: 467 LDQDECTDDSKCREGC 482
+ +K
Sbjct: 308 KRYEASLIGTKHHHHH 323
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 46.6 bits (110), Expect = 9e-06
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 194 CLELSNQCAFRCHNVPGS--FRCICPYGYALAPDGRHCIDINECEQ 237
C + C+ C P ++C CP G L +G+ C D N
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHH 315
Score = 45.5 bits (107), Expect = 2e-05
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 217 PYGYALAPDGRHCIDINECEQFPGLCAHTCTNT--EGSYTCGCHPGFELSSDGSGTCLDS 274
P R N C G C+H C + + Y C C G +L +G TC D
Sbjct: 252 PMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGK-TCKDG 310
Query: 275 DECATGRH 282
+ H
Sbjct: 311 NSHHHHHH 318
Score = 37.4 bits (86), Expect = 0.007
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 277 CATGRHICQQIC---NLLGGYKCGCPEGYVRHPFSNECIDDNECA 318
C C +C + Y+C CP G C D N
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHH 314
Score = 35.8 bits (82), Expect = 0.027
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 150 GSFRCLCPRGFKLDRTGTFCLDQDECT 176
++C CP G KL G C D +
Sbjct: 288 PFYQCACPTGVKLLENGKTCKDGNSHH 314
Score = 35.8 bits (82), Expect = 0.027
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 447 GSFRCLCPRGFKLDRTGTFCLDQDECT 473
++C CP G KL G C D +
Sbjct: 288 PFYQCACPTGVKLLENGKTCKDGNSHH 314
Score = 32.0 bits (72), Expect = 0.45
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 356 ALQLCTQLSSSCLSSPCSFGCTPL-GISGFSCECPSGYQ 393
Q + CS C + C CP+G +
Sbjct: 261 QRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 47.1 bits (111), Expect = 1e-05
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 186 QTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCI 230
N C E + C+ C P RC CP G+ L D + CI
Sbjct: 573 HRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 45.2 bits (106), Expect = 3e-05
Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 213 RCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCL 272
+ G R E+ G C+H C C C GFEL SD TC+
Sbjct: 560 QLPDLMGLKATNVHRVIGSNPCAEE-NGGCSHLCLYRPQGLRCACPIGFELISDMK-TCI 617
Score = 34.0 bits (77), Expect = 0.10
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 256 GCHPGFELSSDGSGTCLDSDECATGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECI 312
L + + S+ CA C +C G +C CP G+ CI
Sbjct: 560 QLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 32.9 bits (74), Expect = 0.29
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 145 CINTMGSFRCLCPRGFKLDRTGTFCL 170
C+ RC CP GF+L C+
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTCI 617
Score = 32.9 bits (74), Expect = 0.29
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 442 CINTMGSFRCLCPRGFKLDRTGTFCL 467
C+ RC CP GF+L C+
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTCI 617
Score = 32.5 bits (73), Expect = 0.35
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 336 CFNTAGSYRCGCPDGFQFEAALQLC 360
C RC CP GF+ + ++ C
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTC 616
Score = 29.8 bits (66), Expect = 2.1
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 3/106 (2%)
Query: 288 CNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGC 347
N G + E + H F + D + S +R + +
Sbjct: 506 MNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAE--REVIIDQLPD 563
Query: 348 PDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQ 393
G + ++ + + CS C G C CP G++
Sbjct: 564 LMGLKATNVHRVIGSNPCAEENGGCSHLCLYRP-QGLRCACPIGFE 608
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 44.0 bits (104), Expect = 2e-05
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 187 TCEDINECLELSN-QCAFRCHNVPGSFRCICPYGYALAPDGRHCID 231
DINEC + + C+ C+N G + C CP Y L D ++C
Sbjct: 113 VATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 39.8 bits (93), Expect = 5e-04
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 228 HCIDINECEQFPGL-CAHTCTNTEGSYTCGCHPGFELSSDG 267
DINEC F + C+H C N G Y C C P + L D
Sbjct: 113 VATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDM 153
Score = 37.5 bits (87), Expect = 0.003
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 405 SSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGT 464
S DI+EC + ++ P C N +G + C CP + L
Sbjct: 99 FSNEERFTGFAAYYVATDINECTDFVDV----PCSHFCNNFIGGYFCSCPPEYFL----- 149
Query: 465 FCLDQDECTDD 475
D C +
Sbjct: 150 -HDDMKNCGVN 159
Score = 34.0 bits (78), Expect = 0.049
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 270 TCLDSDECA-TGRHICQQIC-NLLGGYKCGCPEGYVRHPFSNECIDD 314
D +EC C C N +GGY C CP Y H C +
Sbjct: 113 VATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGVN 159
Score = 33.2 bits (76), Expect = 0.084
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 118 KFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTD 177
Y V D++EC + ++ P C N +G + C CP + L D C
Sbjct: 109 AAYYVATDINECTDFVDV----PCSHFCNNFIGGYFCSCPPEYFL------HDDMKNCGV 158
Query: 178 D 178
+
Sbjct: 159 N 159
Score = 31.3 bits (71), Expect = 0.35
Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 307 FSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQ 352
D NEC P S+ C N G Y C CP +
Sbjct: 110 AYYVATDINECTDFVDVPCSHF-------CNNFIGGYFCSCPPEYF 148
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 40.9 bits (96), Expect = 6e-05
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 14/63 (22%)
Query: 292 GGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTA--GSYRCGCPD 349
C C G + + C+ C GG C + C CP+
Sbjct: 30 RVEYCWCNSGRAQ----CHSVPVKSCSEPRC--------FNGGTCQQALYFSDFVCQCPE 77
Query: 350 GFQ 352
GF
Sbjct: 78 GFA 80
Score = 40.2 bits (94), Expect = 1e-04
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 198 SNQCAFR-CHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAH--TCTNTE--GS 252
+Q R C C G A H + + C + C + TC
Sbjct: 17 QHQSWLRPVLRSNRVEYCWCNSGRA----QCHSVPVKSCSEPR--CFNGGTCQQALYFSD 70
Query: 253 YTCGCHPGFE 262
+ C C GF
Sbjct: 71 FVCQCPEGFA 80
Score = 39.0 bits (91), Expect = 3e-04
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 336 CFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFG--CTPL-GISGFSCECPSGY 392
+ C C G Q + SC C G C S F C+CP G+
Sbjct: 25 VLRSNRVEYCWCNSGRA-----QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGF 79
Query: 393 Q 393
Sbjct: 80 A 80
Score = 32.8 bits (75), Expect = 0.042
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 26/92 (28%)
Query: 144 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAF 203
+ + C C G + C + +C G TC+
Sbjct: 24 PVLRSNRVEYCWCNSGR----AQCHSVPVKSC-SEPRCFNG-GTCQQ------------- 64
Query: 204 RCHNVPGSFRCICPYGYALAPDGRHC-IDINE 234
F C CP G+A G+ C ID
Sbjct: 65 --ALYFSDFVCQCPEGFA----GKSCEIDTRA 90
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 44.1 bits (104), Expect = 9e-05
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 6/118 (5%)
Query: 235 CEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGY 294
++ L + + S CH F +D G LD A CQ++C
Sbjct: 269 IKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDI-VAAKSHEACQKLCT--NAV 325
Query: 295 KCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQ 352
+C + P C + + + T G+ + + R D
Sbjct: 326 RCQ---FFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNEC 380
Score = 30.2 bits (68), Expect = 1.6
Identities = 17/118 (14%), Positives = 28/118 (23%), Gaps = 12/118 (10%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQ-TCEDINECLELSNQC 201
+ + S C F T L ++ +K E CQ C + C +
Sbjct: 278 FSLQSCRHSIPVFCHSSFY---HDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTP 334
Query: 202 AFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHP 259
A C G + G+ +T + C
Sbjct: 335 A--------QASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKI 384
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 42.4 bits (99), Expect = 2e-04
Identities = 19/136 (13%), Positives = 31/136 (22%), Gaps = 22/136 (16%)
Query: 127 DECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQ 186
C N C C + F C C + + G C+ + + +G
Sbjct: 6 QTCA---NNRHQCSVHAECRDYATGFCCRCVANYTGN--GRQCVAEGSPQRVNGKVKGRI 60
Query: 187 TCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPG--LCAH 244
VP F + Y + GR I+ + G L
Sbjct: 61 FVGS---------------SQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPL 105
Query: 245 TCTNTEGSYTCGCHPG 260
+
Sbjct: 106 APIGGIIGWMFAVEQD 121
Score = 42.1 bits (98), Expect = 3e-04
Identities = 11/71 (15%), Positives = 17/71 (23%), Gaps = 3/71 (4%)
Query: 273 DSDECATGRHIC--QQIC-NLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTT 329
CA RH C C + G+ C C Y + + +
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVG 63
Query: 330 GERGGKCFNTA 340
+ F
Sbjct: 64 SSQVPVVFENT 74
Score = 36.3 bits (83), Expect = 0.015
Identities = 10/127 (7%), Positives = 24/127 (18%), Gaps = 16/127 (12%)
Query: 231 DINECEQFPGLCA--HTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC 288
C C+ C + + C C + + +G C+ +
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGR-QCVAEGSPQRVNGKVKGRI 60
Query: 289 NLLGG-----YKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSY 343
+ ++ YV + P + +
Sbjct: 61 FVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTI------PETVGYSLLPLAPIGGIIGW 114
Query: 344 RCGCPDG 350
Sbjct: 115 MFAVEQD 121
Score = 32.4 bits (73), Expect = 0.30
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 422 DIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 481
C N C C + F C C + + G C+ + + +G
Sbjct: 4 AQQTCA---NNRHQCSVHAECRDYATGFCCRCVANYTGN--GRQCVAEGSPQRVNGKVKG 58
Query: 482 C 482
Sbjct: 59 R 59
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 38.2 bits (89), Expect = 2e-04
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 235 CEQFPGLCAHTCTNTEG-SYTCGCHPGFELSSDGSGTCLDSDECATGR 281
C G C C N+ C C G+ L+ + +C + GR
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQK-SCEPAVPFPCGR 48
Score = 31.3 bits (71), Expect = 0.075
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 201 CAFRCHNVPG-SFRCICPYGYALAPDGRHCIDINEC 235
C C N C C GY LA + + C
Sbjct: 9 CEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
Score = 25.9 bits (57), Expect = 5.7
Identities = 15/57 (26%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 277 CATGRHICQQICNLL--GGYKCGCPEGYVRHP--FSNECIDDNECARNPCEPSSNTT 329
C C+Q C C C EGY S E C R +S T
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSKLT 58
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 37.4 bits (87), Expect = 4e-04
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 235 CEQFPGLCAHTCTNTEGS-YTCGCHPGFELSSDGSGTCLDSDECATGR 281
C G C C++ G+ +C CH G+ L +DG +C + E G+
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV-SCTPTVEYPCGK 48
Score = 31.2 bits (71), Expect = 0.056
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 201 CAFRCHNVPGSFR-CICPYGYALAPDGRHCIDINEC 235
C C + G+ R C C GY+L DG C E
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 41.7 bits (97), Expect = 4e-04
Identities = 23/122 (18%), Positives = 35/122 (28%), Gaps = 6/122 (4%)
Query: 175 CTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGY-----ALAPDGRHC 229
DD G +D + S + R + G R I L
Sbjct: 203 IADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQ 262
Query: 230 IDINECEQFPGLCAHTCTNTE-GSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQIC 288
NEC G C+H C G + CGC + L++D + +
Sbjct: 263 SGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRM 322
Query: 289 NL 290
+
Sbjct: 323 VI 324
Score = 40.9 bits (95), Expect = 8e-04
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 186 QTCEDINECLELSNQCAFRCHNVP-GSFRCICPYGYALAPDGRHCIDINECEQ 237
+ C + + C+ C G+ RC CP L D C
Sbjct: 574 LQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKHHHH 626
Score = 39.4 bits (91), Expect = 0.002
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 6/119 (5%)
Query: 205 CHNVPGSFRCIC----PYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPG 260
N+ G R + P+ + L + + + T
Sbjct: 192 SSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 251
Query: 261 FELSSDGSGTCLDSDECATGRHICQQICNLL--GGYKCGCPEGYVRHPFSNECIDDNEC 317
++ S +ECA+ C +C + GG+ CGCP Y + + C
Sbjct: 252 MDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF 310
Score = 37.1 bits (85), Expect = 0.014
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 220 YALAPDGRHCIDINECEQFPGLCAHTCTNT-EGSYTCGCHPGFELSSDGSGTCLDSDEC 277
+A+ + C Q G C+H C +G+ C C L D +C +
Sbjct: 567 HAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDEL-SCGGTKHH 624
Score = 31.3 bits (70), Expect = 0.74
Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 1/81 (1%)
Query: 288 CNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTA-GSYRCG 346
++ G + + + + P + G C G+ RC
Sbjct: 545 IDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCS 604
Query: 347 CPDGFQFEAALQLCTQLSSSC 367
CP C
Sbjct: 605 CPMHLVLLQDELSCGGTKHHH 625
Score = 29.8 bits (66), Expect = 2.6
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 358 QLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQ 393
Q Q + + CS C G C CP
Sbjct: 575 QEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLV 610
Score = 29.8 bits (66), Expect = 2.7
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 348 PDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHC 400
+ + + + CS C + + GF C CP+ Y
Sbjct: 251 VMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRT 303
Score = 28.6 bits (63), Expect = 5.1
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 150 GSFRCLCPRGFKLDRTGTFCLD 171
G+ RC CP L + C
Sbjct: 599 GTTRCSCPMHLVLLQDELSCGG 620
Score = 28.6 bits (63), Expect = 5.1
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 447 GSFRCLCPRGFKLDRTGTFCLD 468
G+ RC CP L + C
Sbjct: 599 GTTRCSCPMHLVLLQDELSCGG 620
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 41.0 bits (95), Expect = 8e-04
Identities = 26/183 (14%), Positives = 40/183 (21%), Gaps = 35/183 (19%)
Query: 173 DECTDDSKCREGCQTCEDINECLE-LSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-I 230
+ D+ DI N A C C C + G C
Sbjct: 273 EIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTT----GPDCGK 328
Query: 231 DINECEQFPGLCAH-TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICN 289
+ P + + C P + + ++ C CQ
Sbjct: 329 CKKNYQGRP--WSPGSYLPIPKGAANACIPSI--------SSIGTNVCDNELLHCQNGGT 378
Query: 290 LLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPD 349
+C CP Y C + CE G C + +G
Sbjct: 379 CHNNVRCLCPAAY----------TGILCEKLRCEE--------AGSCGSDSGQGAPPHGT 420
Query: 350 GFQ 352
Sbjct: 421 HHH 423
Score = 33.7 bits (76), Expect = 0.13
Identities = 24/151 (15%), Positives = 33/151 (21%), Gaps = 37/151 (24%)
Query: 132 EINGVAVCPKPG---TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG---- 184
+I C C+ C C TG C + G
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNT----TGPDCGKCKKNYQGRPWSPGSYLP 345
Query: 185 -----------CQTCEDINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHCID 231
+ N C C CHN + RC+CP Y G C
Sbjct: 346 IPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHN---NVRCLCPAAYT----GILC-- 396
Query: 232 INECEQFPGLCAHTCTNTEGSYTCGCHPGFE 262
+ +C + G
Sbjct: 397 -EKLRCEEA---GSCGSDSGQGAPPHGTHHH 423
Score = 30.2 bits (67), Expect = 1.7
Identities = 22/150 (14%), Positives = 31/150 (20%), Gaps = 20/150 (13%)
Query: 313 DDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPC 372
D R C + C C C C + + P
Sbjct: 290 DIKVRGRCKCNLHATV-------CVYDNSKLTCECEHNTTGPD----CGKCKKNYQGRPW 338
Query: 373 SFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEING 432
S G G + C IG C + G C G
Sbjct: 339 SPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHN-----NVRCLCPAAYTG 393
Query: 433 VA----VCPKPGTCINTMGSFRCLCPRGFK 458
+ C + G+C + G
Sbjct: 394 ILCEKLRCEEAGSCGSDSGQGAPPHGTHHH 423
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 35.5 bits (83), Expect = 0.001
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 312 IDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQ 352
+D ++C NPC GG C + SY C CP GF+
Sbjct: 1 VDGDQCESNPCL--------NGGSCKDDINSYECWCPFGFE 33
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 230 IDINECEQFPGLCAH--TCTNTEGSYTCGCHPGFE 262
+D ++CE P C + +C + SY C C GFE
Sbjct: 1 VDGDQCESNP--CLNGGSCKDDINSYECWCPFGFE 33
Score = 30.5 bits (70), Expect = 0.083
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 13/47 (27%)
Query: 422 DIDECKEE--INGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
D D+C+ +NG G+C + + S+ C CP GF G C
Sbjct: 2 DGDQCESNPCLNG-------GSCKDDINSYECWCPFGF----EGKNC 37
Score = 30.1 bits (69), Expect = 0.12
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 190 DINECLELSNQCAF--RCHNVPGSFRCICPYGYALAPDGRHC 229
D ++C SN C C + S+ C CP+G+ +G++C
Sbjct: 2 DGDQCE--SNPCLNGGSCKDDINSYECWCPFGF----EGKNC 37
Score = 28.2 bits (64), Expect = 0.43
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFC 169
G+C + + S+ C CP GF G C
Sbjct: 15 GSCKDDINSYECWCPFGF----EGKNC 37
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 367 CLSSPCSFG--CTPLGISGFSCECPSGYQ 393
C S+PC G C I+ + C CP G++
Sbjct: 6 CESNPCLNGGSCKD-DINSYECWCPFGFE 33
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 39.3 bits (91), Expect = 0.001
Identities = 28/234 (11%), Positives = 55/234 (23%), Gaps = 38/234 (16%)
Query: 143 GTCINTMGSFRCLCPRGFKLDRTGTFCLDQDE--------CTDDSKCREGCQTCEDINEC 194
G + ++ P GF+ + + G + ++I
Sbjct: 44 GKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNI-VA 102
Query: 195 LELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYT 254
+ + + + ++ P G+ + + ++ G +
Sbjct: 103 VSIKSNDGGKTLTGTTTYNGEGPIGFK----SEVTDGDTYSVENQWGGSAAPWHSGGVWV 158
Query: 255 CGCHP-----GFELSSDGSGTCLDSD-----ECATG------RHICQQICNLLGGYKCGC 298
G + S+ G L E G + N GG
Sbjct: 159 LGTRGKQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPW 218
Query: 299 PEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQ 352
+P I + N GGK Y P GF+
Sbjct: 219 ------NPGGFWMIGARN---GQNVVALNVASSDGGKTLAGTMIYNGEGPIGFR 263
Score = 30.1 bits (67), Expect = 1.5
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 28/159 (17%)
Query: 333 GGKCFNTAGSYRCGCPDGFQF----EAALQLCTQLSSS---------------------C 367
GGK +Y P GF+ + Q +
Sbjct: 43 GGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVA 102
Query: 368 LSSPCSFGCTPL-GISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDI-DE 425
+S + G L G + ++ E P G++ ++ + + + +
Sbjct: 103 VSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTR 162
Query: 426 CKEEINGVAV-CPKPGTCINTMGSFRCLCPRGFKLDRTG 463
K+ + V G ++ ++ P GF+ T
Sbjct: 163 GKQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTS 201
Score = 29.3 bits (65), Expect = 2.6
Identities = 19/154 (12%), Positives = 41/154 (26%), Gaps = 16/154 (10%)
Query: 139 CPKPGTCINTMGSFRCLCPRGFKLDRT--GTFCLDQDECTDDSKCREGCQ-----TCEDI 191
G + ++ P GFK + T T+ ++ + G +
Sbjct: 107 SNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQN 166
Query: 192 NECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEG 251
++ + + + ++ P G+ G + + N G
Sbjct: 167 VINVDAKSNDGGKTLSGTMTYNGEGPIGFR----GTLTSPDTYTVENQWGGSTAPWNPGG 222
Query: 252 SYTCGCHPG-----FELSSDGSGTCLDSDECATG 280
+ G G ++S G L G
Sbjct: 223 FWMIGARNGQNVVALNVASSDGGKTLAGTMIYNG 256
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 39.7 bits (92), Expect = 0.002
Identities = 50/274 (18%), Positives = 76/274 (27%), Gaps = 56/274 (20%)
Query: 128 ECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQT 187
C+++ ++C G + C C G+ G C + T +E +
Sbjct: 426 RCRDQSRDRSLCHGKGFLECGI----CRCDTGY----IGKNC---ECQTQGRSSQELEGS 474
Query: 188 CEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPD--GRHC-IDINECEQFPG-LCA 243
C N + S C +C+C G++C D CE++ G +C
Sbjct: 475 CRKDNNSIICSGLGDCVC------GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCG 528
Query: 244 HTCTNTEGSYTCGCHPGF-----ELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGC 298
C CHPGF + G +GR C+ C C
Sbjct: 529 GPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCR-------CNVCEC 581
Query: 299 PEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQ 358
GY C + +PC + C G +
Sbjct: 582 HSGY----QLPLC-QECPGCPSPC--------GKYISCAEC-----LKFEKGPFGKNCSA 623
Query: 359 LCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGY 392
C LS+ G T S C Y
Sbjct: 624 AC---PGLQLSNNPVKGRT--CKERDSEGCWVAY 652
Score = 37.8 bits (87), Expect = 0.007
Identities = 36/188 (19%), Positives = 51/188 (27%), Gaps = 28/188 (14%)
Query: 117 KKFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGF-------KLDRTGTFC 169
K Y + + D E VC PG + G +C C GF + G
Sbjct: 505 KLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG--KCRCHPGFEGSACQCERTTEGCLN 562
Query: 170 LDQDECTDDSKCREGCQTCE------DINECLELSNQCAFRCHNVPGSFRCICPYGYALA 223
+ EC+ +CR C EC + C G
Sbjct: 563 PRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAEC---LKFEKGPF-- 617
Query: 224 PDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCL-----DSDECA 278
G++C Q T E + GC + L +S EC
Sbjct: 618 --GKNCSAACPGLQLSNNPVKGRTCKERD-SEGCWVAYTLEQQDGMDRYLIYVDESRECV 674
Query: 279 TGRHICQQ 286
G C +
Sbjct: 675 AGPDGCGE 682
Score = 37.0 bits (85), Expect = 0.012
Identities = 42/284 (14%), Positives = 65/284 (22%), Gaps = 68/284 (23%)
Query: 125 DMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG 184
+ ++ + I +G + +C CR
Sbjct: 385 VPITFQVKVTATECIQEQSFVIRALGFTDIVT------------VQVLPQCE----CRCR 428
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAH 244
Q+ + + C + G C C GY G++C + +
Sbjct: 429 DQSRD--------RSLCHGKGFLECG--ICRCDTGYI----GKNC-ECQTQGRSSQELEG 473
Query: 245 TCTNTEGSY-----------TCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGG 293
+C S C CH G + D R+ Q G
Sbjct: 474 SCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRG 533
Query: 294 Y----KCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPD 349
KC C G+ + C E C G+C C C
Sbjct: 534 LCFCGKCRCHPGF----EGSAC--QCERTTEGCLNPRRVECSGRGRC----RCNVCECHS 583
Query: 350 GFQFEAALQLCTQLSSSCLSSP-CSFGCTPLGISGFSCECPSGY 392
G+Q C P C C + G
Sbjct: 584 GYQ-----------LPLCQECPGCPSPCGKYISCAECLKFEKGP 616
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 39.3 bits (91), Expect = 0.002
Identities = 41/255 (16%), Positives = 60/255 (23%), Gaps = 37/255 (14%)
Query: 243 AHTCTNTEGSYTCGCHPGFELSSDGSGTC-LDSDECATGRHICQQICNLLGGYKCGCPEG 301
A C +G T L+ + C H G +
Sbjct: 260 ASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYH--DLPWRPAEGRNSNACKK 317
Query: 302 YVRHPFSNECIDDNECARNPCEPSS--------NTTGERGGKCFNTAGSYRCGCPDGFQF 353
+ S+ C D S NT G +C ++ D
Sbjct: 318 CNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQC--KPFYFQHPERDIRDP 375
Query: 354 EAALQ-LCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGF 412
C S + +G+ C C + C GF
Sbjct: 376 NLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCK--------EGF 427
Query: 413 RSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDEC 472
+ C N + P C + G C C R TG C D+C
Sbjct: 428 YDLSAEDPYGCKSC--ACNPLGTIPGGNPCDSETG--YCYCKRLV----TGQRC---DQC 476
Query: 473 TD----DSKCREGCQ 483
S +GC+
Sbjct: 477 LPQHWGLSNDLDGCR 491
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 37.6 bits (87), Expect = 0.003
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 187 TCEDINECLELSNQ---CAFRCHNVPGSFRCICPYGYALAPDGRHCIDIN 233
EDI+EC + C CHN G F C C GY L + R C + +
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 34.9 bits (80), Expect = 0.024
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 228 HCIDINECEQFPGL---CAHTCTNTEGSYTCGCHPGFELSSDG 267
DI+EC+ PG C H C N G + C C G+ L +
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNK 162
Score = 34.1 bits (78), Expect = 0.046
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 307 FSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLS 364
D +EC P E + C N G + C C G+ + C++ S
Sbjct: 117 AFYAAEDIDECQVAPGEAPTC-----DHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 32.2 bits (73), Expect = 0.22
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 405 SSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGT 464
S P DIDEC ++ C N +G F C C G+ L R
Sbjct: 106 YSNEKPFTGFEAFYAAEDIDEC--QVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKR 163
Query: 465 FCLDQ 469
C +Q
Sbjct: 164 TCSEQ 168
Score = 31.1 bits (70), Expect = 0.45
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 118 KFYSVFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQ 172
+ + D+DEC ++ C N +G F C C G+ L R C +Q
Sbjct: 116 EAFYAAEDIDEC--QVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168
Score = 27.6 bits (61), Expect = 6.2
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 259 PGFELSSDGSGTCLDSDECATGRHICQQIC--NLLGGYKCGCPEGYVRHPFSNECIDDN 315
P + + +D + A G N LGG+ C C GYV H C + +
Sbjct: 111 PFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 37.8 bits (88), Expect = 0.005
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 233 NEC-EQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQ 285
NEC + C H C + SYTC C G+ L D C+ D+CA G +
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQ-CVPHDQCACGVLTSE 55
Score = 33.1 bits (76), Expect = 0.15
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 192 NECLELSN-QCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINEC 235
NEC C C S+ C C GY L D + C+ ++C
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 47
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 38.0 bits (87), Expect = 0.007
Identities = 24/131 (18%), Positives = 36/131 (27%), Gaps = 12/131 (9%)
Query: 176 TDDSKCREGCQTCEDINECLEL--SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDIN 233
D+S Q + CL L + AF H C + C +
Sbjct: 12 LDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESG 71
Query: 234 ECEQFPGLCAHTCTNT--EGSYTC--GCHPGFELSSDGSGTCLDSDECATGRHICQQICN 289
+ C C + SY C C + G C ++ + C + C
Sbjct: 72 DLR--KHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCE 129
Query: 290 ----LLGGYKC 296
G KC
Sbjct: 130 VDNECSGVKKC 140
Score = 36.5 bits (83), Expect = 0.018
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 13/128 (10%)
Query: 139 CPKPGTCINTMGSFRCL---CPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECL 195
G+ + RCL R + C + +C + + C++ +
Sbjct: 15 SLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLR 74
Query: 196 ELSNQCAFRCHNVPG--SFRCICPYG---YALAPDGRHCIDINECEQFPGLCAHTCT--- 247
+ +QC C + S+ C+ Y L C + F C +C
Sbjct: 75 K--HQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDN 132
Query: 248 NTEGSYTC 255
G C
Sbjct: 133 ECSGVKKC 140
Score = 31.1 bits (69), Expect = 0.83
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 20/124 (16%)
Query: 144 TCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQT--------CEDINECL 195
C++ + + F+ + + +C + +C SKC E C+ C+ E L
Sbjct: 29 RCLSLQITRISAFFQHFQNNGSLVWCQNHKQC---SKCLEPCKESGDLRKHQCQSFCEPL 85
Query: 196 --ELSNQCAFRCHNVPGSF---RCICPYGYALAPDGRHCIDI----NECEQFPGLCAHTC 246
+ S +C C + + CP + C++ NEC C++ C
Sbjct: 86 FPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGC 145
Query: 247 TNTE 250
+T
Sbjct: 146 GHTC 149
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 37.8 bits (87), Expect = 0.007
Identities = 35/268 (13%), Positives = 52/268 (19%), Gaps = 47/268 (17%)
Query: 150 GSFRCLCPRGFKLDRTG-TFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAFR---- 204
GSF PR D Q + R + +C +
Sbjct: 137 GSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGP 196
Query: 205 --------CHN----VPGSFRCICPYGYA------LAPDGRHCIDINECEQFPGLCAHTC 246
C N + CICP G+ E C
Sbjct: 197 ECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYV 256
Query: 247 TNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGG-----YKCGCPEG 301
Y C C G++ G G + G C C G
Sbjct: 257 FCLPDPYGCSCATGWK----GLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPG 312
Query: 302 YVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCP-DGFQFEAALQLC 360
+ E I + +G + C G+
Sbjct: 313 WQGLQCEREGIPR--MTPKIVD--------LPDHIEVNSGKFNPICKASGWPLP----TN 358
Query: 361 TQLSSSCLSSPCSFGCTPLGISGFSCEC 388
+++ FS
Sbjct: 359 EEMTLVKPDGTVLHPKDFNHTDHFSVAI 386
Score = 30.1 bits (67), Expect = 1.7
Identities = 20/162 (12%), Positives = 33/162 (20%), Gaps = 36/162 (22%)
Query: 139 CPKPGTCIN----TMGSFRCLCPRGFKLDRTGTFCLDQ-DECTDDSKCREGCQ-----TC 188
C C + + C C G+ G C + C+ C C
Sbjct: 246 CSGQEGCKSYVFCLPDPYGCSCATGW----KGLQCNEACHPGFYGPDCKLRCSCNNGEMC 301
Query: 189 EDINECL-------------------ELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
+ CL G F IC A
Sbjct: 302 DRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPIC---KASGWPLPTN 358
Query: 230 IDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTC 271
++ + + N ++ + SG
Sbjct: 359 EEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVW 400
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 37.3 bits (86), Expect = 0.008
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 191 INECLELSN---QCAFRCHNVP------GSFRCICPYGYALAPDGRHCI 230
+N C + C + C P F C CP G LA D R C+
Sbjct: 267 VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
Score = 37.0 bits (85), Expect = 0.011
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 217 PYGYALAPDGRHCIDINECEQFP---GLCAHTCTNT------EGSYTCGCHPGFELSSDG 267
P L + +N CE+ G C + C +TC C G L+ D
Sbjct: 252 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 311
Query: 268 SGTCL 272
+CL
Sbjct: 312 R-SCL 315
Score = 30.4 bits (68), Expect = 1.3
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 138 VCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCL 170
+C F C CP G L R CL
Sbjct: 283 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
Score = 30.4 bits (68), Expect = 1.3
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 435 VCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCL 467
+C F C CP G L R CL
Sbjct: 283 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
Score = 29.6 bits (66), Expect = 1.9
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 7/45 (15%)
Query: 275 DECATGRHICQQICNL-------LGGYKCGCPEGYVRHPFSNECI 312
+ CQ +C + C CP+G + C+
Sbjct: 271 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
Score = 29.6 bits (66), Expect = 2.3
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 320 NPCEPSSNTTGERGGKCFNT------AGSYRCGCPDGFQ 352
N CE ++ + G C + + C CPDG
Sbjct: 268 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 306
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 37.5 bits (86), Expect = 0.009
Identities = 36/240 (15%), Positives = 63/240 (26%), Gaps = 37/240 (15%)
Query: 168 FCLDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGR 227
L++D+ + G + ++ Q RC + +CP +
Sbjct: 145 IVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWT-HSHCQKVCPTIC------K 197
Query: 228 HCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQI 287
E C C+ + C F L G C+++
Sbjct: 198 SHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLD----GRCVET------------- 240
Query: 288 CNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGC 347
CP Y C++ + C + N+ + + C
Sbjct: 241 ----------CPPPYYHFQ-DWRCVNFSFCQ-DLHHKCKNSRRQGCHQYVIHNNKCIPEC 288
Query: 348 PDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSG 407
P G+ ++ LCT C S S + G I G + I G
Sbjct: 289 PSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVI-NGSLIINIRGG 347
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 35.9 bits (83), Expect = 0.009
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 129 CKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 169
C C G C+ T+ ++ C C GF +G C
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGF----SGLKC 153
Score = 35.9 bits (83), Expect = 0.009
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 426 CKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFC 466
C C G C+ T+ ++ C C GF +G C
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGF----SGLKC 153
Score = 29.3 bits (66), Expect = 1.7
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 322 CE--PSSNTTGERGGKCFNTAGSYRCGCPDGF 351
C +NT+ G+C T +Y C C GF
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGF 148
Score = 27.0 bits (60), Expect = 9.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 244 HTCTNTEGSYTCGCHPGF 261
C T +YTC C PGF
Sbjct: 131 GECVETINNYTCKCDPGF 148
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 37.1 bits (85), Expect = 0.011
Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 10/149 (6%)
Query: 178 DSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQ 237
+C C ++ C+ C + G CP +G C+D + C
Sbjct: 202 HPECLGSCSAPDNDTACV----ACRHYYYA--GVCVPACPPNT-YRFEGWRCVDRDFCAN 254
Query: 238 FPGLCAHTCTN---TEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGY 294
+ +G C GF + S C+ + ++ +
Sbjct: 255 ILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSV 314
Query: 295 KCGCPEGYVRHPFSNECIDDNECARNPCE 323
N I+ E
Sbjct: 315 TSAQMLQGCTIFKGNLLINIRRGNNIASE 343
Score = 31.0 bits (69), Expect = 1.00
Identities = 34/236 (14%), Positives = 54/236 (22%), Gaps = 19/236 (8%)
Query: 198 SNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGC 257
N+ C ++ P + + + +C TC + T
Sbjct: 141 GNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGK--RACTENN 198
Query: 258 HPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECIDDNEC 317
+ C RH G CP R C+D + C
Sbjct: 199 ECCHPECLGSCSAPDNDTACVACRHYYYA-----GVCVPACPPNTYRFE-GWRCVDRDFC 252
Query: 318 ARNPCEPSSNTTG--ERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFG 375
A SS++ G G+C CP GF + P
Sbjct: 253 ANILSAESSDSEGFVIHDGECMQE-------CPSGFIRNGS--QSMYCIPCEGPCPKVCE 303
Query: 376 CTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEIN 431
+ S Q I+ S +G I+ +
Sbjct: 304 EEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASELENFMGLIEVVTGYVK 359
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 35.9 bits (83), Expect = 0.028
Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 11/100 (11%)
Query: 253 YTCGCHPGFELSSDGSG------TCLDSDECATGRHICQQI-CNLLGGYKCGCPEGYVRH 305
+ C G++L C D C+ C G P G R+
Sbjct: 28 FIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDC----GQPRNLPNGDFRY 83
Query: 306 PFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRC 345
+ + C R G + G Y C
Sbjct: 84 TTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTC 123
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 33.2 bits (76), Expect = 0.073
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 129 CKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTD 177
C C K G C+ T+G++ C C GF G C + D
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGF----YGPECEYVRDDDD 161
Score = 33.2 bits (76), Expect = 0.073
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 426 CKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTD 474
C C K G C+ T+G++ C C GF G C + D
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGF----YGPECEYVRDDDD 161
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 34.5 bits (78), Expect = 0.098
Identities = 33/240 (13%), Positives = 56/240 (23%), Gaps = 40/240 (16%)
Query: 128 ECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQT 187
+ + + I C P+GF + + + T T
Sbjct: 685 KPVVQEVLTITPFQRLYRIGESIELTC--PKGFVVAGPSRYTCQGNSWTPPISN---SLT 739
Query: 188 CEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCT 247
CE + + + CIC + LC
Sbjct: 740 CE---KDTLTKLKGHCQLGQKQSGSECICMSPEE-----------DCSHHSEDLCVFDTD 785
Query: 248 NTEGS-------YTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPE 300
+ + C +L G+C D + G + N CG
Sbjct: 786 SNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGY-- 843
Query: 301 GYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLC 360
+ C D +C+ +S +CF C E L +C
Sbjct: 844 --------DTCYDWEKCS----ASTSKCVCLLPPQCFKGGNQLYCVKMGSSTSEKTLNIC 891
Score = 32.2 bits (72), Expect = 0.52
Identities = 47/304 (15%), Positives = 68/304 (22%), Gaps = 41/304 (13%)
Query: 201 CAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCG---- 256
C F G D C Q N + Y G
Sbjct: 590 CTFSIMENNGQPCINDDEEMKEVDLPEIEADSG-CPQPVPPENGFIRNEKQLYLVGEDVE 648
Query: 257 --CHPGFELSSDGSGTCLDSDECATGRHICQQIC-------------NLLGGYKCG---- 297
C GFE CL G CQ+ Y+ G
Sbjct: 649 ISCLTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIE 708
Query: 298 --CPEGYVRH-PFSNECIDDN----ECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDG 350
CP+G+V P C ++ CE + T + + C C
Sbjct: 709 LTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSP 768
Query: 351 FQFEAALQLCTQLSSSCLSSPCSFGCTPLGI-SGFSCECPSGYQRIGQGHCLATISSGLY 409
+ C+ S + +C + Q L
Sbjct: 769 EE-----DCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLE 823
Query: 410 PGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQ 469
G + + K+E G C C + CL P +C+
Sbjct: 824 WGLERTRLSS----NSTKKESCGYDTCYDWEKCSASTSKCVCLLPPQCFKGGNQLYCVKM 879
Query: 470 DECT 473
T
Sbjct: 880 GSST 883
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 33.6 bits (76), Expect = 0.18
Identities = 24/159 (15%), Positives = 39/159 (24%), Gaps = 21/159 (13%)
Query: 134 NGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINE 193
+G A P F C F + + T +C + + +
Sbjct: 681 HGWAQLSSPPYYYGDSVEFNC--SESFTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSS 738
Query: 194 CLELSNQ-------------CAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPG 240
L + + +RC G +C G I C P
Sbjct: 739 NLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQ 798
Query: 241 LCAHTCTNTEGSYTCG------CHPGFELSSDGSGTCLD 273
+ T +Y G C + + TC D
Sbjct: 799 IPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEITCKD 837
Score = 30.5 bits (68), Expect = 1.4
Identities = 33/266 (12%), Positives = 54/266 (20%), Gaps = 20/266 (7%)
Query: 133 INGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDIN 192
ING + K N ++ C G++ G + C E I
Sbjct: 198 INGSPISQKIIYKENERFQYK--CNMGYEYSERGDAVCTESGWRPLPSCEEKSCDNPYIP 255
Query: 193 ECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGS 252
H C G+ A G + C
Sbjct: 256 NG---DYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGWIPAPRCTLKP-----C 307
Query: 253 YTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECI 312
G + + C + G +
Sbjct: 308 DYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDH----IHCTQDGWSP 363
Query: 313 DDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSS------S 366
+ N + G+ F S C G+ A T + +
Sbjct: 364 AVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPR 423
Query: 367 CLSSPCSFGCTPLGISGFSCECPSGY 392
C+ + +GF E Y
Sbjct: 424 CIRVKTCSKSSIDIENGFISESQYTY 449
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 33.0 bits (74), Expect = 0.24
Identities = 37/208 (17%), Positives = 55/208 (26%), Gaps = 52/208 (25%)
Query: 127 DECKEEINGVAVCPKPGTCINTMGSFRCL----CPRGFKLDRTGTFCLDQDECTDDSKCR 182
D C G CP T IN RC C + C + C C
Sbjct: 157 DICPGTAKGKTNCPA--TVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE-CL 213
Query: 183 EGCQTCEDINECLELSNQCAFRCHNVPGSFRCI--CPYGYALAPDGRHCIDINECEQFPG 240
C +D +C+ C N RC+ CP Y C++ + C+
Sbjct: 214 GNCSQPDDPTKCVA--------CRNFYLDGRCVETCPPPY-YHFQDWRCVNFSFCQDLHH 264
Query: 241 LCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPE 300
C ++ GCH + +++C CP
Sbjct: 265 KCKNSRR-------QGCHQ----------YVIHNNKCIPE-----------------CPS 290
Query: 301 GYVRHPFSNECIDDNECARNPCEPSSNT 328
GY + + C C
Sbjct: 291 GYTMNSSNLLCTPCLGPCPKVCHLLEGE 318
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 32.9 bits (75), Expect = 0.25
Identities = 14/129 (10%), Positives = 24/129 (18%), Gaps = 10/129 (7%)
Query: 304 RHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQL 363
+ + N C Y G P F + +
Sbjct: 46 ALSKHQDFNSAVQLVENFCRN--------PDGDEEGVWCYVAGKPGDFGYCDLNYCEEAV 97
Query: 364 SSSCLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDI 423
I G + GL P F + +
Sbjct: 98 EEETGDGLDEDSDRA--IEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTER 155
Query: 424 DECKEEING 432
+ + I+G
Sbjct: 156 ELLESYIDG 164
Score = 31.0 bits (70), Expect = 0.80
Identities = 10/100 (10%), Positives = 22/100 (22%), Gaps = 3/100 (3%)
Query: 245 TCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVR 304
Y G F +E G + + + G
Sbjct: 69 GDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDG--LDEDSDRAIEGATATSEYQTFF 126
Query: 305 HPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYR 344
+P + + +C P + + + + R
Sbjct: 127 NPATFGS-GEADCGLRPLFEKKSLEDKTERELLESYIDGR 165
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 31.7 bits (72), Expect = 0.28
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 129 CKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECT 176
C C G C+ + ++ C C G+ G C
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGY----YGPQCQFVQVDP 160
Score = 31.7 bits (72), Expect = 0.28
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 426 CKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECT 473
C C G C+ + ++ C C G+ G C
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGY----YGPQCQFVQVDP 160
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 32.4 bits (73), Expect = 0.34
Identities = 36/223 (16%), Positives = 48/223 (21%), Gaps = 43/223 (19%)
Query: 129 CKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTC 188
C + G I SF + DS + C
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 189 EDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTN 248
+ CA + P S RC +G + C PG C
Sbjct: 434 D-----------CACQAQAEPNSHRC---------NNGNGTFECGVCRCGPGWLGSQCEC 473
Query: 249 TEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFS 308
+E Y +G C EC G+ C C F
Sbjct: 474 SEEDYRPSQQDECS-PREGQPVCSQRGECLCGQ--------------CVCHSSD----FG 514
Query: 309 NECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGF 351
EC C G+C C C +
Sbjct: 515 KITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDW 553
Score = 31.6 bits (71), Expect = 0.61
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 138 VCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLEL 197
+C G C GS C G G C C D ++ C C+ +
Sbjct: 574 LCSGRGKCEC--GSCVC-IQPGS----YGDTCEKCPTCPDACTFKKECVECKKFDRGALH 626
Query: 198 S-NQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECE 236
N C C + S + + G D +C NE +
Sbjct: 627 DENTCNRYCRDEIESVKELKDTGK----DAVNCTYKNEDD 662
Score = 31.2 bits (70), Expect = 0.96
Identities = 49/325 (15%), Positives = 80/325 (24%), Gaps = 91/325 (28%)
Query: 167 TFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDG 226
CL+ + C G + + ++ +E + + + + + +
Sbjct: 372 ATCLNNEVIPGLKSC-MGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVT 430
Query: 227 RHCIDINECEQFPGLCAHTCTNTEGSYTCG---CHPGFE------LSSDGSGTCLDSDEC 277
C C+ +H C N G++ CG C PG+ D + D
Sbjct: 431 FDCD--CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSP 488
Query: 278 ATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCF 337
G+ +C Q L G +C C F EC C G+C
Sbjct: 489 REGQPVCSQRGECLCG-QCVCHSSD----FGKITGKYCECDDFSCVRYKGEMCSGHGQCS 543
Query: 338 NTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQRIGQ 397
C C + +G+ C C +
Sbjct: 544 C----GDCLCDSDW------------------------------TGYYCNCTTRTDTCMS 569
Query: 398 GHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGF 457
+ L +C G C GS C G
Sbjct: 570 SNGL---------------------------------LCSGRGKCEC--GSCVC-IQPGS 593
Query: 458 KLDRTGTFCLDQDECTDDSKCREGC 482
G C C D ++ C
Sbjct: 594 ----YGDTCEKCPTCPDACTFKKEC 614
Score = 29.7 bits (66), Expect = 2.9
Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 26/190 (13%)
Query: 134 NGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINE 193
G VC + G C+ +C+C TG +C EC D S R + C +
Sbjct: 490 EGQPVCSQRGECLCG----QCVCHSSDFGKITGKYC----ECDDFSCVRYKGEMCSGHGQ 541
Query: 194 CLELSNQCAFRCHNVPG----SFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNT 249
C C C C ++ +G C +CE G C +
Sbjct: 542 C--SCGDC--LCD--SDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCE--CGSCVCIQPGS 593
Query: 250 EGSYTCGCHPGFELSSDGSGTCLDSDECATGRH----ICQQICNLLG-GYKCGCPEGYVR 304
G C P + C++ + G C + C K G
Sbjct: 594 YGDT-CEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDA 652
Query: 305 HPFSNECIDD 314
+ + DD
Sbjct: 653 VNCTYKNEDD 662
Score = 28.1 bits (62), Expect = 8.8
Identities = 32/196 (16%), Positives = 49/196 (25%), Gaps = 38/196 (19%)
Query: 292 GGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTA----GSYRCGC 347
+ + + E C + F + ++ C C
Sbjct: 376 NNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDC 435
Query: 348 PDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPSGYQRIGQGHCLATISSG 407
Q E C + + C C P G G CEC
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCR--CGP-GWLGSQCECSEED--------------- 477
Query: 408 LYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCL 467
DEC G VC + G C+ +C+C TG +C
Sbjct: 478 ----------YRPSQQDECSPR-EGQPVCSQRGECLCG----QCVCHSSDFGKITGKYC- 521
Query: 468 DQDECTDDSKCREGCQ 483
+ D+ + E C
Sbjct: 522 ECDDFSCVRYKGEMCS 537
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 32.1 bits (72), Expect = 0.44
Identities = 28/274 (10%), Positives = 59/274 (21%), Gaps = 28/274 (10%)
Query: 169 CLDQDECTDDSKCREGCQTCEDINECLELSNQCA--FRCHNVPGSFRCICPYGYALAPDG 226
D + + +C LSN C C + + C C L G
Sbjct: 595 SKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL---G 651
Query: 227 RHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSS-DGSGTCLDSDECATGRHICQ 285
R C + G +T S G + + + +
Sbjct: 652 RSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRL 711
Query: 286 QICN--LLGGYKCGCPEGYVRHPFSNECIDDNE-----CARN--------PCEPSSNTTG 330
++ + G + + ++DNE R + +
Sbjct: 712 ELDAGRVKLTVNLGKGPETLF---AGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQM 768
Query: 331 ERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGFSCECPS 390
+ + S + ++ CE +
Sbjct: 769 AGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNA 828
Query: 391 GYQRIGQGHCLATISSG----LYPGFRSYERPNL 420
+ T + ++Y +L
Sbjct: 829 RFGFRNIIADPVTFKTKSSYVALATLQAYTSMHL 862
Score = 32.1 bits (72), Expect = 0.47
Identities = 37/265 (13%), Positives = 62/265 (23%), Gaps = 34/265 (12%)
Query: 138 VCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREG-CQTCEDINECLE 196
VC G C C C R G C E + N
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSR---TGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQS 253
Query: 197 LSNQCAFRCHNVPGSFRCICPYGYALAPDGRH---CIDINECEQFP------GLCAHTCT 247
S++ F+ + G L + + G
Sbjct: 254 SSDEITLS-------FKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVE 306
Query: 248 NTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGG----YKCGCPEGY- 302
G + +++ + + D T Q+ +LG Y G P
Sbjct: 307 PVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTAD 366
Query: 303 -----VRHPFSNECIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGFQFEAAL 357
V + F C+ + N + ++G G C + +
Sbjct: 367 LPGSPVSNNFMG-CLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPI- 424
Query: 358 QLCTQLSSSCLSSPCSFGCTPLGIS 382
+ S +S P IS
Sbjct: 425 --TFETPESFISLPKWNAKKTGSIS 447
Score = 30.6 bits (68), Expect = 1.6
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 156 CPRGFKLDRTGTFCLD--QDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSFR 213
R ++ + +D + + D+ G CE E C V
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 214 CICP 217
C C
Sbjct: 213 CDCS 216
Score = 29.8 bits (66), Expect = 2.4
Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 10/86 (11%)
Query: 230 IDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICN 289
+ + P + E + G P G CL+ C+
Sbjct: 157 VRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCS----------V 206
Query: 290 LLGGYKCGCPEGYVRHPFSNECIDDN 315
+ C C R ++ ++
Sbjct: 207 VDDQAVCDCSRTGFRGKDCSQGKEEY 232
Score = 29.4 bits (65), Expect = 2.9
Identities = 11/65 (16%), Positives = 14/65 (21%), Gaps = 4/65 (6%)
Query: 199 NQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGC- 257
+ P G C E E L C+ + C C
Sbjct: 160 QSSLALPVDSGEVKLDDEPPNS---GGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCS 216
Query: 258 HPGFE 262
GF
Sbjct: 217 RTGFR 221
Score = 29.4 bits (65), Expect = 3.4
Identities = 6/41 (14%), Positives = 8/41 (19%), Gaps = 8/41 (19%)
Query: 311 CIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDGF 351
C + C G C + C C
Sbjct: 1014 EGPSTTCQEDSCSN--------QGVCLQQWDGFSCDCSMTS 1046
Score = 29.4 bits (65), Expect = 3.7
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 360 CTQLSSSCLSSPCSFG--CTPLGISGFSCECP-SGYQRIGQGHCLATISSGLYPGFRSYE 416
C S++C CS C GFSC+C + + T G +Y+
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQW-DGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYK 1071
Query: 417 RPNLGDIDECKEEI 430
P + +
Sbjct: 1072 WPPNDRPSTRADRL 1085
Score = 27.9 bits (61), Expect = 9.1
Identities = 8/58 (13%), Positives = 12/58 (20%)
Query: 122 VFLDMDECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDS 179
V + C G C + + C C L R+
Sbjct: 610 VKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSM 667
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 31.8 bits (72), Expect = 0.47
Identities = 23/93 (24%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 176 TDDSKCREGCQ-----TCEDINECLELS---NQCAFRCHNVPGSFRCICPYGYALAPDGR 227
+D S D++EC E C CHN G + C C +GY L D R
Sbjct: 101 SDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNR 160
Query: 228 HCIDINECEQFPGLCAHTCTNTEGSYTCGCHPG 260
C + T G T P
Sbjct: 161 TC--------RVECSDNLFTQRTGVITSPDFPN 185
Score = 29.5 bits (66), Expect = 2.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 228 HCIDINECEQFPGL---CAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDS 274
+D++EC++ C H C N G Y C C G+ L +D ++
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVEC 166
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 31.7 bits (71), Expect = 0.57
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 213 RCICPYGYALAPDGRHCIDINECEQFPGLC------AHTCTNTEGSYTCGCHPGF 261
+C+C GY D + HT + EG+ +C C GF
Sbjct: 264 QCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGF 318
Score = 28.2 bits (62), Expect = 6.2
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 268 SGTCLDSDECATGRHICQQICNLLGGY-----KCGCPEGYVRHPFSNECIDDNECARNPC 322
+GTC+D G + C + G + +C C GY + + +
Sbjct: 232 AGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEAS 291
Query: 323 EPSSNTTGERGGKCFNTAGSYRCGCPDGF 351
E + G+ C C +GF
Sbjct: 292 ESP--CLECPEHTLPSPEGATSCECEEGF 318
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 30.6 bits (68), Expect = 1.1
Identities = 28/154 (18%), Positives = 42/154 (27%), Gaps = 36/154 (23%)
Query: 185 CQTCEDINECLELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHC-------------ID 231
C C ++ C + P +C C + R C
Sbjct: 263 GGRCV----CHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDS 318
Query: 232 INECEQFP-GLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDECATGRHICQQICNL 290
NEC+ A+ C + G G CLD TG + C++
Sbjct: 319 ANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGIN-CER---- 373
Query: 291 LGGYKCGCPEGYVRHPFSNECIDDNECARNPCEP 324
C G+ R P D + + C P
Sbjct: 374 -------CLPGFFRAP------DQPLDSPHVCRP 394
Score = 29.5 bits (65), Expect = 2.9
Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 35/161 (21%)
Query: 196 ELSNQCAFRCHNVPGSFRCICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTC 255
++ + + ++ RC+C +G+A C + + F CA NT G
Sbjct: 248 TVTRRYYYSIKDISIGGRCVC-HGHA-----DVCDAKDPLDPFRLQCACQ-HNTCGGSCD 300
Query: 256 GCHPGFELSSDGSGTCLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECIDDN 315
C PGF T ++EC + H + +C D
Sbjct: 301 RCCPGFNQQPWKPATTDSANECQSCNC----------------------HGHAYDCYYDP 338
Query: 316 ECARNPCEPSSNTTGERGGKCF----NTAGSYRCG-CPDGF 351
E R + + + GG C +T G C C GF
Sbjct: 339 EVDRREASQNQDNVYQGGGVCLDCQHHTTGI-NCERCLPGF 378
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.7 bits (69), Expect = 1.1
Identities = 6/40 (15%), Positives = 8/40 (20%), Gaps = 8/40 (20%)
Query: 311 CIDDNECARNPCEPSSNTTGERGGKCFNTAGSYRCGCPDG 350
C + C G C + C C
Sbjct: 182 EGPSTTCQEDSCS--------NQGVCLQQWDGFSCDCSMT 213
Score = 30.7 bits (69), Expect = 1.2
Identities = 13/72 (18%), Positives = 16/72 (22%), Gaps = 3/72 (4%)
Query: 128 ECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGCQT 187
E C G C+ F C C +G C D SK
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTS---FSGPLCNDPGTTYIFSKGGGQITY 238
Query: 188 CEDINECLELSN 199
N+
Sbjct: 239 KWPPNDRPSTRA 250
Score = 30.4 bits (68), Expect = 1.3
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 360 CTQLSSSCLSSPCSFG--CTPLGISGFSCECP-SGYQRIGQGHCLATISSGLYPGFRSYE 416
C S++C CS C GFSC+C + + T G +Y+
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQW-DGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYK 239
Query: 417 RPNLGDIDECKEEI 430
P + +
Sbjct: 240 WPPNDRPSTRADRL 253
Score = 29.6 bits (66), Expect = 2.2
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 3/48 (6%)
Query: 425 ECKEEINGVAVCPKPGTCINTMGSFRCLCPRGFKLDRTGTFCLDQDEC 472
E C G C+ F C C +G C D
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTS---FSGPLCNDPGTT 226
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 29.6 bits (66), Expect = 2.1
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 218 YGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGS 268
+ +A D C E E C H C N G Y C C G+ L +D
Sbjct: 113 DAHYMAVDVDEC---KEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNR 160
Score = 29.6 bits (66), Expect = 2.2
Identities = 7/53 (13%), Positives = 14/53 (26%)
Query: 225 DGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDEC 277
G C ++ + + C G+++ D EC
Sbjct: 278 AGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIEC 330
Score = 28.0 bits (62), Expect = 7.1
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 187 TCEDINECLELSN---QCAFRCHNVPGSFRCICPYGYALAPDGRHC 229
D++EC E + C CHN G + C C +GY L D R C
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 29.3 bits (65), Expect = 2.7
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 17/76 (22%)
Query: 257 CHPG----FELSSDG------SGTCLDSDECATGRHICQQICN-------LLGGYKCGCP 299
C F +G SG CLD + ++ C+ C
Sbjct: 183 CEDNLDQWFRYYENGEIVNAKSGMCLDVEGSDGSGNVGIYRCDDLRDQMWSRPNAYCNGD 242
Query: 300 EGYVRHPFSNECIDDN 315
+ SN+C+D +
Sbjct: 243 YCSFLNKESNKCLDVS 258
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 29.8 bits (66), Expect = 2.7
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 11/86 (12%)
Query: 228 HCIDINECEQFPGLCAHTCTNTEGSYTCG------CHPGFELSSDGSGTCLDSDECATGR 281
CI N+C A ++ C PGF + + C +
Sbjct: 1543 RCISTNKCTAPEVENAIRVPGNRSFFSLTEIIRFRCQPGFVMVGSHTVQCQTNGRWGPKL 1602
Query: 282 HICQQICNLL-----GGYKCGCPEGY 302
C ++C G + + +
Sbjct: 1603 PHCSRVCQPPPEILHGEHTLSHQDNF 1628
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 29.5 bits (65), Expect = 2.8
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 234 ECEQFPGLCAHTCTNTEGSYTCG---CHPGF 261
C+ +H C N G++ CG C PG+
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGW 466
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 26.7 bits (58), Expect = 3.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 243 AHTCTNTEGSYTCGCHPGFELSSDGSG--TCLDSDE 276
A TC T Y C C+ G+ +S DG+G TC+ E
Sbjct: 24 AGTCKETNSGYICRCNQGYRISLDGTGNVTCIVRQE 59
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 29.1 bits (65), Expect = 4.1
Identities = 24/167 (14%), Positives = 40/167 (23%), Gaps = 26/167 (15%)
Query: 155 LCPRGFKLDRTGTFCLDQDECTDDSKCREGCQTCEDINECLELSNQCAFRCHNVPGSF-R 213
+C + + CLD + D++ C + S
Sbjct: 122 ICKSSWSMREANVACLDL--GFQQGADTQRRFKLSDLSINSTECLH--VHCRGLETSLAE 177
Query: 214 CICPYGYALAPDGRHCIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELS--SDGSGTC 271
C R + + + + + C DG C
Sbjct: 178 CT--------FTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDC 229
Query: 272 LD-SDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECIDDNEC 317
D SDE C G C + V P +C + +C
Sbjct: 230 GDQSDE---------LCCKACQGKGFHC-KSGVCIPSQYQCNGEVDC 266
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 28.3 bits (62), Expect = 4.4
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 6/105 (5%)
Query: 171 DQDECTDDS-KCREGCQTCEDINECL----ELSNQCAFRCHNVPGSFRCICPYGYALAPD 225
+ EC D +C C+ +C E C+ +V S+ + + +
Sbjct: 57 HESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLN 116
Query: 226 GRH-CIDINECEQFPGLCAHTCTNTEGSYTCGCHPGFELSSDGSG 269
H + I + SY H ++ G
Sbjct: 117 PDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRG 161
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 28.8 bits (63), Expect = 5.2
Identities = 22/218 (10%), Positives = 47/218 (21%), Gaps = 7/218 (3%)
Query: 271 CLDSDECATGRHICQQICNLLGGYKCGCPEGYVRHPFSNECIDDNECARNPCEPSSNTT- 329
+ C + + C G R +E C ++
Sbjct: 172 PPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDC 231
Query: 330 -----GERGGKCFNTAGSYRCGCPDGFQFEAALQLCTQLSSSCLSSPCSFGCTPLGISGF 384
G C + D F+ + +SC+++ +
Sbjct: 232 LACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEV-GSC 290
Query: 385 SCECPSGYQRIGQGHCLATISSGLYPGFRSYERPNLGDIDECKEEINGVAVCPKPGTCIN 444
+ CP Q + P R + + + + I
Sbjct: 291 TLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIF 350
Query: 445 TMGSFRCLCPRGFKLDRTGTFCLDQDECTDDSKCREGC 482
+F G +Q + + + G
Sbjct: 351 GSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGY 388
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 27.0 bits (59), Expect = 5.4
Identities = 17/81 (20%), Positives = 24/81 (29%), Gaps = 6/81 (7%)
Query: 206 HNVPGSFRCICPYGYALAPDGRHCIDIN-ECEQFPGLCAH--TCTNTE-GSYTCGCHPGF 261
+ G+ C G+ G C+ + CE+ G CA CT + C C
Sbjct: 26 RYLDGTEEWRCLLGF--KEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEG 83
Query: 262 ELSSDGSGTCLDSDECATGRH 282
C S H
Sbjct: 84 SEPLFEGVFCSSSSGPHHHHH 104
>1hx2_A BSTI; beta-sheet disulfide-rich, hydrolase inhibitor; NMR {Bombina
bombina} SCOP: g.22.1.2
Length = 60
Score = 26.0 bits (57), Expect = 5.8
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 239 PGLCAHTCTNTEGSYTCGCHPGFELSSDGSGTCLDSDEC 277
LC C CGC G L S S C+ +C
Sbjct: 27 LVLCDKKCNQR-----CGCISGTVLKSKDSSECVHPSKC 60
>2aai_B Ricin (B chain); glycosidase; HET: GAL BGC NDG NAG BMA MAN; 2.50A
{Ricinus communis} SCOP: b.42.2.1 b.42.2.1 PDB: 3rti_B*
3rtj_B* 1rzo_B*
Length = 262
Score = 28.1 bits (62), Expect = 7.0
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 253 YTCGCHPG----FELSSDG----SGTCLDSDECATGRHICQQICNLLGGYK---CGCPEG 301
+ C + + L D +G CL + + G ++ CN G
Sbjct: 37 WPCKSNTDANQLWTLKRDNTIRSNGKCLTTYGYSPGVYVMIYDCNTAATDATRWQIWDNG 96
Query: 302 YVRHPFSNECIDDN 315
+ +P S+ +
Sbjct: 97 TIINPRSSLVLAAT 110
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 27.8 bits (61), Expect = 7.9
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 253 YTCGCHPG----FELSSDGS----GTCLDSDECATGRHICQQICNLLGGYK---CGCPEG 301
+ + + + DG+ G+CL + G ++ CN G
Sbjct: 38 WPSKSNNDPNQLWTIKKDGTIRSNGSCLTTYGYTAGVYVMIFDCNTAVREATIWQIWGNG 97
Query: 302 YVRHPFSNECIDDNECA 318
+ +P SN + +
Sbjct: 98 TIINPRSNLVLAASSGI 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.469
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,431,127
Number of extensions: 458669
Number of successful extensions: 3074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1857
Number of HSP's successfully gapped: 686
Length of query: 483
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 386
Effective length of database: 3,993,456
Effective search space: 1541474016
Effective search space used: 1541474016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.9 bits)