Query psy1180
Match_columns 140
No_of_seqs 225 out of 1793
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:19:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0854|consensus 100.0 4.6E-45 1E-49 279.1 10.9 139 1-140 86-224 (224)
2 cd03016 PRX_1cys Peroxiredoxin 100.0 1.1E-35 2.4E-40 231.0 11.5 118 11-138 86-203 (203)
3 PRK13599 putative peroxiredoxi 100.0 4.4E-35 9.6E-40 230.5 12.2 118 11-139 89-214 (215)
4 COG0450 AhpC Peroxiredoxin [Po 100.0 3.2E-34 6.9E-39 221.7 9.9 100 9-115 93-192 (194)
5 PRK13191 putative peroxiredoxi 100.0 8.4E-34 1.8E-38 223.1 11.7 116 11-140 94-213 (215)
6 PRK13189 peroxiredoxin; Provis 100.0 2.3E-33 5E-38 221.4 11.9 119 11-140 96-222 (222)
7 PRK13190 putative peroxiredoxi 100.0 2.4E-32 5.1E-37 212.5 11.3 114 12-138 89-202 (202)
8 KOG0852|consensus 100.0 6.7E-30 1.5E-34 194.9 8.2 102 9-120 93-194 (196)
9 PRK15000 peroxidase; Provision 99.9 1.2E-27 2.6E-32 186.2 9.8 100 11-120 96-195 (200)
10 PTZ00137 2-Cys peroxiredoxin; 99.9 2.7E-27 5.8E-32 191.4 10.4 93 10-110 159-251 (261)
11 PRK10382 alkyl hydroperoxide r 99.9 2.4E-26 5.2E-31 177.6 10.8 90 11-106 90-179 (187)
12 PTZ00253 tryparedoxin peroxida 99.9 1.5E-24 3.3E-29 167.8 9.8 99 11-119 98-196 (199)
13 TIGR03137 AhpC peroxiredoxin. 99.9 1.1E-21 2.3E-26 150.7 10.5 91 10-106 89-179 (187)
14 cd03015 PRX_Typ2cys Peroxiredo 99.8 3E-19 6.5E-24 134.7 10.0 83 11-100 91-173 (173)
15 COG1225 Bcp Peroxiredoxin [Pos 99.6 2.9E-15 6.3E-20 113.3 7.7 73 10-83 84-156 (157)
16 PF10417 1-cysPrx_C: C-termina 99.6 3E-16 6.4E-21 93.6 1.5 40 81-121 1-40 (40)
17 PRK00522 tpx lipid hydroperoxi 99.0 8.1E-10 1.7E-14 83.3 7.7 68 11-81 97-167 (167)
18 cd03013 PRX5_like Peroxiredoxi 99.0 1.8E-09 3.9E-14 80.7 6.5 56 13-70 90-145 (155)
19 PRK09437 bcp thioredoxin-depen 98.9 1E-08 2.2E-13 75.3 7.4 69 11-80 85-153 (154)
20 cd03018 PRX_AhpE_like Peroxire 98.8 1.1E-08 2.4E-13 74.1 6.8 65 11-81 83-149 (149)
21 cd03017 PRX_BCP Peroxiredoxin 98.8 1.1E-08 2.4E-13 73.3 6.4 63 11-77 78-140 (140)
22 cd03014 PRX_Atyp2cys Peroxired 98.8 1.5E-08 3.3E-13 73.3 6.6 59 13-77 82-142 (143)
23 cd02969 PRX_like1 Peroxiredoxi 98.5 3.5E-07 7.6E-12 68.4 7.7 63 11-85 87-154 (171)
24 cd02970 PRX_like2 Peroxiredoxi 98.5 1.6E-07 3.5E-12 67.5 5.5 54 11-64 78-148 (149)
25 cd02971 PRX_family Peroxiredox 98.5 5.6E-07 1.2E-11 64.3 6.9 60 12-74 79-138 (140)
26 cd03012 TlpA_like_DipZ_like Tl 98.3 1.2E-06 2.5E-11 62.5 5.3 43 11-65 83-125 (126)
27 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 9.1E-07 2E-11 61.8 4.5 45 11-61 80-124 (124)
28 PF08534 Redoxin: Redoxin; In 98.2 3.1E-06 6.8E-11 61.2 6.0 62 11-75 83-145 (146)
29 PLN02412 probable glutathione 98.0 5.4E-06 1.2E-10 62.5 4.0 67 11-82 92-163 (167)
30 PRK15412 thiol:disulfide inter 98.0 2.3E-05 4.9E-10 59.8 6.9 44 11-66 119-163 (185)
31 KOG0855|consensus 98.0 2.2E-05 4.7E-10 60.6 6.6 67 10-81 144-210 (211)
32 TIGR00385 dsbE periplasmic pro 98.0 2.4E-05 5.1E-10 59.0 6.7 55 11-81 114-169 (173)
33 PRK03147 thiol-disulfide oxido 98.0 3.5E-05 7.5E-10 57.0 7.4 56 11-82 116-171 (173)
34 TIGR01626 ytfJ_HI0045 conserve 98.0 1.9E-05 4.2E-10 61.2 5.9 58 12-82 121-182 (184)
35 TIGR02540 gpx7 putative glutat 97.9 2.2E-05 4.8E-10 57.8 4.6 65 11-82 85-152 (153)
36 PTZ00256 glutathione peroxidas 97.8 2.3E-05 4.9E-10 59.8 3.3 55 11-66 104-168 (183)
37 cd03010 TlpA_like_DsbE TlpA-li 97.6 0.00014 3.1E-09 51.4 5.5 44 11-66 77-121 (127)
38 cd02968 SCO SCO (an acronym fo 97.6 8.6E-05 1.9E-09 53.1 4.3 51 11-62 84-140 (142)
39 cd03011 TlpA_like_ScsD_MtbDsbE 97.5 0.00038 8.2E-09 48.6 6.3 41 11-64 71-111 (123)
40 cd00340 GSH_Peroxidase Glutath 97.5 6E-05 1.3E-09 55.5 2.1 53 11-66 84-143 (152)
41 TIGR02661 MauD methylamine deh 97.4 0.00028 6.1E-09 54.1 5.1 55 11-80 125-179 (189)
42 cd02966 TlpA_like_family TlpA- 97.3 0.00069 1.5E-08 45.1 5.1 40 11-62 75-114 (116)
43 PLN02399 phospholipid hydroper 97.0 0.0011 2.4E-08 53.2 4.8 68 11-82 162-233 (236)
44 PF13911 AhpC-TSA_2: AhpC/TSA 96.9 0.0021 4.5E-08 45.1 5.3 61 2-64 27-113 (115)
45 PRK13728 conjugal transfer pro 96.8 0.0066 1.4E-07 47.0 7.7 61 11-85 111-173 (181)
46 COG2077 Tpx Peroxiredoxin [Pos 96.7 0.0018 3.8E-08 49.0 3.7 57 4-65 92-150 (158)
47 PRK14018 trifunctional thiored 96.7 0.005 1.1E-07 54.7 6.6 52 14-81 120-171 (521)
48 PTZ00056 glutathione peroxidas 96.7 0.0067 1.5E-07 47.1 6.5 32 47-82 146-177 (199)
49 cd02967 mauD Methylamine utili 96.4 0.0056 1.2E-07 42.0 4.1 37 11-61 74-111 (114)
50 PLN02919 haloacid dehalogenase 96.1 0.016 3.5E-07 55.3 7.1 56 11-82 480-535 (1057)
51 cd03008 TryX_like_RdCVF Trypar 96.1 0.0064 1.4E-07 45.4 3.4 34 16-61 95-128 (146)
52 cd03009 TryX_like_TryX_NRX Try 95.6 0.0079 1.7E-07 42.6 2.0 37 12-61 79-115 (131)
53 PF09695 YtfJ_HI0045: Bacteria 93.7 0.099 2.1E-06 39.8 4.0 54 12-80 101-155 (160)
54 TIGR02738 TrbB type-F conjugat 92.5 0.44 9.6E-06 35.6 5.9 32 46-81 119-151 (153)
55 PF13098 Thioredoxin_2: Thiore 91.6 0.56 1.2E-05 31.8 5.2 41 23-79 72-112 (112)
56 PF13905 Thioredoxin_8: Thiore 91.4 0.072 1.6E-06 35.3 0.5 28 19-58 68-95 (95)
57 cd02950 TxlA TRX-like protein 91.1 0.96 2.1E-05 33.0 6.3 55 13-83 53-110 (142)
58 cd02951 SoxW SoxW family; SoxW 90.9 0.68 1.5E-05 32.4 5.2 45 22-82 73-118 (125)
59 PF00837 T4_deiodinase: Iodoth 89.9 0.94 2E-05 36.6 5.7 55 13-82 181-236 (237)
60 cd02964 TryX_like_family Trypa 89.8 0.6 1.3E-05 33.1 4.2 28 23-62 89-116 (132)
61 COG3054 Predicted transcriptio 88.4 1.5 3.2E-05 33.7 5.5 52 17-81 129-181 (184)
62 COG0678 AHP1 Peroxiredoxin [Po 88.3 1.3 2.9E-05 33.7 5.2 51 14-66 99-149 (165)
63 PF05176 ATP-synt_10: ATP10 pr 87.9 1 2.3E-05 36.5 4.8 42 14-65 193-236 (252)
64 COG1999 Uncharacterized protei 87.0 2.5 5.4E-05 33.1 6.3 58 21-83 143-204 (207)
65 cd02956 ybbN ybbN protein fami 84.7 2.3 5E-05 27.9 4.5 46 17-79 50-95 (96)
66 cd03065 PDI_b_Calsequestrin_N 84.3 3.1 6.6E-05 29.9 5.2 46 19-82 73-118 (120)
67 TIGR02740 TraF-like TraF-like 83.9 3 6.5E-05 33.9 5.6 51 15-82 212-263 (271)
68 PF13778 DUF4174: Domain of un 83.1 1.8 3.8E-05 31.0 3.5 34 47-84 80-113 (118)
69 TIGR01352 tonB_Cterm TonB fami 82.5 4.4 9.6E-05 25.4 5.0 37 46-82 12-49 (74)
70 cd02953 DsbDgamma DsbD gamma f 81.6 2 4.4E-05 28.8 3.3 42 22-79 61-103 (104)
71 PRK11509 hydrogenase-1 operon 81.6 5.2 0.00011 29.4 5.6 53 13-82 70-123 (132)
72 cd02958 UAS UAS family; UAS is 81.0 6.7 0.00015 27.0 5.8 44 23-82 66-110 (114)
73 cd02963 TRX_DnaJ TRX domain, D 80.5 4.5 9.7E-05 27.9 4.8 54 12-82 57-111 (111)
74 cd02955 SSP411 TRX domain, SSP 79.1 11 0.00024 27.1 6.6 35 47-81 82-120 (124)
75 PF03544 TonB_C: Gram-negative 78.3 3.2 6.9E-05 26.4 3.2 36 46-81 18-54 (79)
76 cd02994 PDI_a_TMX PDIa family, 75.8 9.9 0.00021 25.1 5.3 44 19-80 57-100 (101)
77 cd02948 TRX_NDPK TRX domain, T 74.8 13 0.00027 25.1 5.6 52 13-82 51-102 (102)
78 TIGR01126 pdi_dom protein disu 74.5 9 0.0002 24.8 4.8 46 19-81 55-100 (102)
79 cd02961 PDI_a_family Protein D 74.3 5.3 0.00011 25.5 3.5 52 11-78 48-100 (101)
80 PRK09381 trxA thioredoxin; Pro 73.0 18 0.00039 24.2 6.1 48 17-81 59-106 (109)
81 PRK10606 btuE putative glutath 72.5 7.8 0.00017 29.7 4.6 33 48-82 148-180 (183)
82 PRK10819 transport protein Ton 71.6 11 0.00023 30.5 5.3 37 46-83 183-221 (246)
83 PRK00293 dipZ thiol:disulfide 70.4 6.4 0.00014 35.3 4.2 47 23-83 524-570 (571)
84 TIGR01068 thioredoxin thioredo 69.6 19 0.0004 23.1 5.4 52 13-81 47-99 (101)
85 PRK10996 thioredoxin 2; Provis 68.3 18 0.0004 26.0 5.6 46 19-81 92-137 (139)
86 PF02630 SCO1-SenC: SCO1/SenC; 66.9 5.3 0.00012 30.0 2.6 43 21-63 126-172 (174)
87 cd03002 PDI_a_MPD1_like PDI fa 66.1 10 0.00023 25.2 3.7 46 22-79 63-108 (109)
88 PF03190 Thioredox_DsbH: Prote 65.9 35 0.00075 26.0 6.8 66 15-84 74-145 (163)
89 cd03005 PDI_a_ERp46 PDIa famil 65.3 15 0.00033 23.9 4.3 33 20-65 60-92 (102)
90 COG0810 TonB Periplasmic prote 64.9 23 0.0005 28.1 6.0 40 45-84 181-221 (244)
91 PF11211 DUF2997: Protein of u 64.4 16 0.00034 22.2 3.8 31 49-81 2-32 (48)
92 cd02985 TRX_CDSP32 TRX family, 63.8 32 0.00069 23.1 5.8 40 23-80 61-100 (103)
93 cd02949 TRX_NTR TRX domain, no 61.8 22 0.00048 23.4 4.6 32 20-64 54-85 (97)
94 PLN00115 pollen allergen group 60.7 5 0.00011 29.1 1.3 12 91-102 100-111 (118)
95 PF13103 TonB_2: TonB C termin 60.4 25 0.00055 22.7 4.6 31 45-75 27-57 (85)
96 cd02975 PfPDO_like_N Pyrococcu 58.4 22 0.00049 24.6 4.3 53 12-82 53-109 (113)
97 PF05988 DUF899: Bacterial pro 57.3 30 0.00065 27.6 5.3 79 11-98 127-205 (211)
98 KOG1651|consensus 57.0 15 0.00032 28.3 3.4 16 48-63 138-153 (171)
99 cd02996 PDI_a_ERp44 PDIa famil 56.7 25 0.00053 23.6 4.2 51 12-78 56-107 (108)
100 cd03004 PDI_a_ERdj5_C PDIa fam 56.3 19 0.00042 23.8 3.6 44 19-78 59-103 (104)
101 smart00594 UAS UAS domain. 55.6 32 0.00068 24.1 4.8 47 21-79 74-121 (122)
102 COG0386 BtuE Glutathione perox 55.0 20 0.00044 27.4 3.8 59 1-63 78-144 (162)
103 PF00085 Thioredoxin: Thioredo 54.4 55 0.0012 20.9 5.7 53 12-81 49-102 (103)
104 KOG0541|consensus 54.2 17 0.00037 27.9 3.3 54 14-69 105-158 (171)
105 COG3322 Predicted periplasmic 53.5 25 0.00054 29.3 4.5 43 47-89 105-151 (295)
106 cd00250 CAS_like Clavaminic ac 50.1 42 0.00091 26.4 5.2 61 46-107 171-234 (262)
107 PF01217 Clat_adaptor_s: Clath 47.7 49 0.0011 23.7 4.8 36 46-81 2-37 (141)
108 PF05228 CHASE4: CHASE4 domain 47.7 48 0.001 23.6 4.8 18 47-64 51-68 (161)
109 PF01802 Herpes_V23: Herpesvir 47.5 19 0.00041 30.1 2.8 19 93-111 95-113 (296)
110 cd02984 TRX_PICOT TRX domain, 47.5 50 0.0011 21.2 4.5 32 20-64 55-86 (97)
111 PHA03257 Capsid triplex subuni 47.2 21 0.00045 30.1 3.1 16 94-109 104-119 (316)
112 TIGR02409 carnitine_bodg gamma 47.2 65 0.0014 27.0 6.1 61 46-106 260-327 (366)
113 TIGR00411 redox_disulf_1 small 45.9 62 0.0013 20.0 4.6 41 20-81 40-80 (82)
114 PF00989 PAS: PAS fold; Inter 45.4 20 0.00043 23.1 2.2 16 47-62 12-27 (113)
115 PF09048 Cro: Cro; InterPro: 45.3 21 0.00045 22.9 2.2 42 23-67 16-58 (59)
116 PF00571 CBS: CBS domain CBS d 45.3 31 0.00068 20.0 3.0 26 46-79 30-55 (57)
117 PHA03258 Capsid triplex subuni 45.0 24 0.00052 29.6 3.1 16 94-109 102-117 (304)
118 cd03001 PDI_a_P5 PDIa family, 45.0 69 0.0015 20.7 4.9 44 19-78 58-101 (103)
119 PF08448 PAS_4: PAS fold; Int 44.8 20 0.00044 22.8 2.2 15 48-62 7-21 (110)
120 PF11199 DUF2891: Protein of u 44.7 11 0.00023 32.0 1.0 31 86-117 192-222 (326)
121 KOG4614|consensus 43.4 32 0.00068 28.3 3.4 34 46-80 248-281 (287)
122 PTZ00443 Thioredoxin domain-co 40.9 70 0.0015 25.3 5.1 47 19-82 92-138 (224)
123 PF13426 PAS_9: PAS domain; PD 40.1 27 0.00059 21.9 2.2 15 48-62 3-17 (104)
124 PF11720 Inhibitor_I78: Peptid 39.9 37 0.0008 21.2 2.8 18 45-62 41-58 (60)
125 cd02965 HyaE HyaE family; HyaE 39.9 1E+02 0.0023 21.8 5.4 37 16-65 66-102 (111)
126 cd02998 PDI_a_ERp38 PDIa famil 39.5 41 0.00089 21.7 3.1 40 22-77 64-103 (105)
127 cd02999 PDI_a_ERp44_like PDIa 39.3 62 0.0014 21.7 4.1 39 21-77 60-98 (100)
128 PF00661 Matrix: Viral matrix 38.9 37 0.00081 29.0 3.4 71 11-85 16-111 (348)
129 TIGR03027 pepcterm_export puta 38.5 61 0.0013 24.0 4.2 43 47-89 20-64 (165)
130 PF02563 Poly_export: Polysacc 37.6 19 0.0004 23.7 1.1 38 47-84 30-69 (82)
131 KOG2792|consensus 36.7 66 0.0014 26.7 4.3 54 23-80 216-272 (280)
132 PRK13907 rnhA ribonuclease H; 36.3 1.2E+02 0.0027 20.9 5.4 41 48-89 20-60 (128)
133 cd02997 PDI_a_PDIR PDIa family 36.0 75 0.0016 20.5 4.0 28 22-62 64-91 (104)
134 cd08357 Glo_EDI_BRP_like_18 Th 35.4 52 0.0011 21.8 3.2 18 46-63 107-124 (125)
135 PF13192 Thioredoxin_3: Thiore 35.2 1.1E+02 0.0023 19.4 4.5 49 12-80 28-76 (76)
136 cd08351 ChaP_like ChaP, an enz 35.2 55 0.0012 22.1 3.3 20 46-65 103-122 (123)
137 TIGR01205 D_ala_D_alaTIGR D-al 34.5 1.5E+02 0.0033 23.6 6.2 21 46-66 264-284 (315)
138 PF13728 TraF: F plasmid trans 34.4 1.4E+02 0.003 23.4 5.8 25 22-58 172-196 (215)
139 PLN00050 expansin A; Provision 34.2 21 0.00045 29.0 1.1 12 91-102 230-241 (247)
140 PRK01966 ddl D-alanyl-alanine 34.1 1.6E+02 0.0034 24.2 6.3 21 46-66 280-300 (333)
141 TIGR02187 GlrX_arch Glutaredox 33.2 1.5E+02 0.0032 22.7 5.7 31 21-64 65-96 (215)
142 PHA01548 hypothetical protein 32.2 1.7E+02 0.0037 22.0 5.5 47 45-106 103-149 (167)
143 cd03000 PDI_a_TMX3 PDIa family 31.5 1.3E+02 0.0029 19.8 4.7 44 20-81 59-102 (104)
144 PF12681 Glyoxalase_2: Glyoxal 31.4 64 0.0014 20.7 3.0 16 46-61 92-107 (108)
145 PLN03023 Expansin-like B1; Pro 31.3 26 0.00057 28.5 1.2 12 91-102 228-239 (247)
146 cd09011 Glo_EDI_BRP_like_23 Th 31.1 63 0.0014 21.6 3.0 17 46-62 101-117 (120)
147 cd07253 Glo_EDI_BRP_like_2 Thi 30.5 65 0.0014 21.0 3.0 18 46-63 107-124 (125)
148 cd03003 PDI_a_ERdj5_N PDIa fam 30.2 78 0.0017 20.7 3.3 28 19-59 58-85 (101)
149 cd06006 R3H_unknown_2 R3H doma 30.1 46 0.00099 21.1 2.0 35 13-52 20-58 (59)
150 PF11009 DUF2847: Protein of u 29.7 34 0.00074 24.2 1.5 30 22-63 66-95 (105)
151 PTZ00102 disulphide isomerase; 29.6 1.1E+02 0.0024 25.9 4.8 52 13-82 85-137 (477)
152 cd02960 AGR Anterior Gradient 29.5 70 0.0015 23.4 3.1 18 46-63 80-97 (130)
153 PRK14568 vanB D-alanine--D-lac 29.5 2.5E+02 0.0054 23.1 6.9 21 46-66 289-309 (343)
154 PLN00193 expansin-A; Provision 29.1 29 0.00062 28.4 1.1 12 91-102 238-249 (256)
155 cd08344 MhqB_like_N N-terminal 29.0 78 0.0017 20.9 3.2 18 46-63 91-108 (112)
156 PHA03259 Capsid triplex subuni 28.9 58 0.0013 27.3 2.9 16 94-109 96-111 (302)
157 smart00775 LNS2 LNS2 domain. T 28.8 60 0.0013 24.0 2.7 18 41-60 139-156 (157)
158 PF09717 CPW_WPC: Plasmodium f 28.6 39 0.00084 21.0 1.5 17 91-107 7-24 (60)
159 cd02947 TRX_family TRX family; 28.5 1.4E+02 0.003 18.0 5.4 40 12-64 41-81 (93)
160 cd07252 BphC1-RGP6_N_like N-te 28.5 86 0.0019 21.1 3.3 18 47-64 100-117 (120)
161 cd07244 FosA FosA, a Fosfomyci 28.4 1.3E+02 0.0028 20.2 4.2 19 46-64 92-110 (121)
162 cd08361 PpCmtC_N N-terminal do 28.4 89 0.0019 21.3 3.5 21 47-67 102-122 (124)
163 cd02954 DIM1 Dim1 family; Dim1 27.4 1E+02 0.0022 21.9 3.6 38 15-65 50-87 (114)
164 cd09012 Glo_EDI_BRP_like_24 Th 26.6 93 0.002 20.9 3.3 16 47-62 107-122 (124)
165 PRK09553 tauD taurine dioxygen 26.5 2.5E+02 0.0055 22.4 6.2 61 47-108 184-249 (277)
166 cd08355 Glo_EDI_BRP_like_14 Th 26.1 90 0.0019 20.8 3.1 17 47-63 105-121 (122)
167 cd08350 BLMT_like BLMT, a bleo 26.1 87 0.0019 20.9 3.0 16 46-61 101-116 (120)
168 PF04486 SchA_CurD: SchA/CurD 25.5 1.9E+02 0.0041 20.8 4.7 64 11-80 4-68 (114)
169 PF09979 DUF2213: Uncharacteri 25.1 52 0.0011 25.1 1.9 44 74-117 55-112 (170)
170 PTZ00051 thioredoxin; Provisio 25.0 1.9E+02 0.0042 18.4 4.6 39 13-64 50-89 (98)
171 PRK11657 dsbG disulfide isomer 24.6 1.2E+02 0.0025 24.2 3.9 28 47-79 221-248 (251)
172 cd02959 ERp19 Endoplasmic reti 24.3 77 0.0017 22.1 2.5 18 46-63 77-94 (117)
173 COG0458 CarB Carbamoylphosphat 24.1 1.4E+02 0.0031 26.0 4.5 93 7-103 232-339 (400)
174 PF14847 Ras_bdg_2: Ras-bindin 23.9 1.5E+02 0.0032 20.9 3.8 36 48-86 2-38 (105)
175 TIGR02410 carnitine_TMLD trime 23.8 2.6E+02 0.0056 23.4 6.0 60 47-106 256-326 (362)
176 PRK08132 FAD-dependent oxidore 23.7 2.1E+02 0.0045 25.1 5.6 47 17-81 497-543 (547)
177 cd02993 PDI_a_APS_reductase PD 23.5 1.5E+02 0.0033 19.8 3.9 42 22-78 66-108 (109)
178 PF07478 Dala_Dala_lig_C: D-al 23.5 1.6E+02 0.0034 22.7 4.3 22 46-67 154-175 (203)
179 PRK14570 D-alanyl-alanine synt 23.2 2.7E+02 0.0059 23.4 6.0 21 46-66 294-315 (364)
180 PF11225 DUF3024: Protein of u 23.1 1.7E+02 0.0037 18.0 3.7 33 47-81 18-50 (57)
181 PF14433 SUKH-3: SUKH-3 immuni 23.0 1.1E+02 0.0025 21.8 3.3 34 46-79 102-136 (142)
182 PTZ00102 disulphide isomerase; 22.8 1.4E+02 0.003 25.3 4.2 34 46-83 432-465 (477)
183 PF00379 Chitin_bind_4: Insect 22.3 1.8E+02 0.004 17.2 3.7 20 46-65 27-47 (52)
184 cd07255 Glo_EDI_BRP_like_12 Th 22.2 1.6E+02 0.0034 19.5 3.7 17 47-63 102-118 (125)
185 PF08750 CNP1: CNP1-like famil 22.1 94 0.002 23.0 2.7 23 47-69 41-63 (139)
186 cd07267 THT_Oxygenase_N N-term 22.0 1.5E+02 0.0032 19.6 3.6 19 46-64 92-110 (113)
187 PRK06724 hypothetical protein; 22.0 1.4E+02 0.0029 21.0 3.5 20 46-65 105-124 (128)
188 PF09561 RE_HpaII: HpaII restr 21.9 1.7E+02 0.0038 25.1 4.6 39 25-65 273-311 (355)
189 cd08356 Glo_EDI_BRP_like_17 Th 21.2 1.1E+02 0.0023 20.5 2.7 16 46-61 96-111 (113)
190 cd02973 TRX_GRX_like Thioredox 20.9 1.5E+02 0.0033 17.7 3.1 21 12-32 30-51 (67)
191 TIGR03645 glyox_marine lactoyl 20.8 1.4E+02 0.0031 21.6 3.5 20 46-65 133-152 (162)
192 PF13596 PAS_10: PAS domain; P 20.7 91 0.002 20.5 2.2 15 48-62 11-25 (106)
193 PF03625 DUF302: Domain of unk 20.6 1.6E+02 0.0034 18.1 3.2 24 41-64 41-64 (65)
194 PRK06769 hypothetical protein; 20.3 92 0.002 23.0 2.4 11 49-59 6-16 (173)
195 cd07241 Glo_EDI_BRP_like_3 Thi 20.0 1.2E+02 0.0026 19.8 2.7 14 47-60 110-123 (125)
No 1
>KOG0854|consensus
Probab=100.00 E-value=4.6e-45 Score=279.10 Aligned_cols=139 Identities=55% Similarity=0.936 Sum_probs=130.9
Q ss_pred CccccccCccCCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 1 DIKNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 1 di~~~~~~~~~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
||++||...-+.++||+|+|+++++|-.|||+++++....|+..++|++||||||.+||.++.||.++|||++||||+|+
T Consensus 86 DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLRvid 165 (224)
T KOG0854|consen 86 DIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILRVID 165 (224)
T ss_pred HHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHHHHHH
Confidence 78999865556799999999999999999999987766556667899999999999999999999999999999999999
Q ss_pred hhHhhhhCCCeeecCCCCCCCceeeCCCCCCchhcccCCCCceEEeCCCCCceeEeccCC
Q psy1180 81 SLQLFYKNNTVVTPANWKPGDKVMIHPAVKDDELPKLFPKGVDIVDMPSGVSYVRFTNDY 140 (140)
Q Consensus 81 alq~~~~~~~~~~PanW~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~ylr~~~~~ 140 (140)
+||++++++ ++||+||+||++||+.|+++.|||++.||+|+++++|||++.|||+|++|
T Consensus 166 sLqlt~~k~-VaTP~nWkpg~~vmilPtV~~eeakklFp~gf~t~~lPSgk~YlR~T~~~ 224 (224)
T KOG0854|consen 166 SLQLTDKKG-VATPVNWKPGDKVMILPTVSDEEAKKLFPKGFNTIELPSGKGYLRFTEQP 224 (224)
T ss_pred HHhhhcccc-cccccccCCCCceEEcCcCChHHHHHhcccccceecCCCCcceeEecCCC
Confidence 999999987 99999999999999999999999999999999999999999999999986
No 2
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=100.00 E-value=1.1e-35 Score=231.00 Aligned_cols=118 Identities=53% Similarity=0.918 Sum_probs=108.8
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCC
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNT 90 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~ 90 (140)
.+++||+|+|++++++++|||..+.. |...+.|++||||++|+|+++++++...+|+++|++|+|++||.+++++
T Consensus 86 ~~~~fpil~D~~~~ia~~yg~~~~~~----~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~~~~~- 160 (203)
T cd03016 86 VEIPFPIIADPDREVAKLLGMIDPDA----GSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHK- 160 (203)
T ss_pred CCCceeEEECchHHHHHHcCCccccC----CCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhHhhcC-
Confidence 68999999999999999999987542 3333679999999999999999999999999999999999999999998
Q ss_pred eeecCCCCCCCceeeCCCCCCchhcccCCCCceEEeCCCCCceeEecc
Q psy1180 91 VVTPANWKPGDKVMIHPAVKDDELPKLFPKGVDIVDMPSGVSYVRFTN 138 (140)
Q Consensus 91 ~~~PanW~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~ylr~~~ 138 (140)
++|||||++||+||++|+++.++|+++|+++++++ +||||+++
T Consensus 161 ~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 203 (203)
T cd03016 161 VATPANWKPGDDVIVPPSVSDEEAKKKFPKGYETV-----DWYLRFTP 203 (203)
T ss_pred cCcCCCCCCCCceecCCCCCHHHHHHhccCCCCcC-----cceEEeCC
Confidence 99999999999999999999999999998888777 99999975
No 3
>PRK13599 putative peroxiredoxin; Provisional
Probab=100.00 E-value=4.4e-35 Score=230.47 Aligned_cols=118 Identities=28% Similarity=0.474 Sum_probs=108.4
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCC
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNT 90 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~ 90 (140)
.+++||||+|++++++++|||+.+.. |. .+.|++||||++|+|+++++++..++||++||||+|++||.+++++
T Consensus 89 ~~i~fPil~D~~~~va~~yg~~~~~~----~~-~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~~~- 162 (215)
T PRK13599 89 IAIPFPVIADDLGKVSNQLGMIHPGK----GT-NTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQYG- 162 (215)
T ss_pred CCCceeEEECCCchHHHHcCCCccCC----CC-ceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhhcC-
Confidence 57999999999999999999987653 32 1579999999999999999999999999999999999999999998
Q ss_pred eeecCCCCC----CCceeeCCCCCCchhcccCCC----CceEEeCCCCCceeEeccC
Q psy1180 91 VVTPANWKP----GDKVMIHPAVKDDELPKLFPK----GVDIVDMPSGVSYVRFTND 139 (140)
Q Consensus 91 ~~~PanW~~----G~~~~~~p~~~~~~~~~~~~~----~~~~~~~p~~~~ylr~~~~ 139 (140)
++|||||++ ||+||++|+++.++|+++|++ |++++ +||||++++
T Consensus 163 ~~~p~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~y~~~~~~ 214 (215)
T PRK13599 163 VALPEKWPNNYLIKDHVIVPPSTDEASANERKEKIKSKEIEAF-----DWWFVHKPL 214 (215)
T ss_pred CCcCCCCCCCCCCCCcEEEcCCCCHHHHHHhccccccCCcccc-----cceEEeeec
Confidence 999999999 999999999999999999984 67766 999999975
No 4
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=221.70 Aligned_cols=100 Identities=38% Similarity=0.634 Sum_probs=91.5
Q ss_pred ccCCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhC
Q psy1180 9 IKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKN 88 (140)
Q Consensus 9 ~~~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~ 88 (140)
++.+++||||+|++++||++|||+.++. |. +.|++|||||+|+||++.+|+.++|||++|+||+|+|||++++|
T Consensus 93 gi~~i~~PmiaD~~~~vs~~ygvl~~~~----g~--a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~~~~h 166 (194)
T COG0450 93 GIGKIKFPMIADPKGEIARAYGVLHPEE----GL--ALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKH 166 (194)
T ss_pred CccceecceEEcCchhHHHHcCCcccCC----Cc--ceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHHHHHh
Confidence 4677999999999999999999999876 77 46999999999999999999999999999999999999999999
Q ss_pred CCeeecCCCCCCCceeeCCCCCCchhc
Q psy1180 89 NTVVTPANWKPGDKVMIHPAVKDDELP 115 (140)
Q Consensus 89 ~~~~~PanW~~G~~~~~~p~~~~~~~~ 115 (140)
+ ++|||||++|+++|+||+.+.+.++
T Consensus 167 g-~vcPanW~~G~~~i~p~~~~~~~~~ 192 (194)
T COG0450 167 G-EVCPANWKPGDKTIKPSPDLGEYLK 192 (194)
T ss_pred C-CCccCCCCCCCccccCCccchhhhh
Confidence 7 9999999999999998776544443
No 5
>PRK13191 putative peroxiredoxin; Provisional
Probab=100.00 E-value=8.4e-34 Score=223.12 Aligned_cols=116 Identities=34% Similarity=0.547 Sum_probs=106.3
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCC
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNT 90 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~ 90 (140)
.+++||||||++++++++|||+.++. .+. +.|++||||++|+|+++++++..+|||++|+||+|++||++++|+
T Consensus 94 ~~i~fPllsD~~~~ia~~ygv~~~~~---~~~--~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~~- 167 (215)
T PRK13191 94 VEVPFPIIADPMGNVAKRLGMIHAES---STA--TVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLVDKAG- 167 (215)
T ss_pred CCCceEEEECCchHHHHHcCCccccc---CCc--eeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhhhhcC-
Confidence 47999999999999999999987542 133 579999999999999999999999999999999999999999998
Q ss_pred eeecCCCCC----CCceeeCCCCCCchhcccCCCCceEEeCCCCCceeEeccCC
Q psy1180 91 VVTPANWKP----GDKVMIHPAVKDDELPKLFPKGVDIVDMPSGVSYVRFTNDY 140 (140)
Q Consensus 91 ~~~PanW~~----G~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~ylr~~~~~ 140 (140)
++|||||++ |+++|++|+.+.++|+++|++++ +||||++++|
T Consensus 168 ~~~P~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~y~~~~~~~ 213 (215)
T PRK13191 168 VVTPANWPNNELIGDKVINPAPRTIKDAKMRLGQPF--------DWWFTYKEVK 213 (215)
T ss_pred CCcCCCCCCCCCCCCceecCCCCCHHHHHHhcccCC--------CCceEcccCC
Confidence 999999997 99999999999999999998753 9999999875
No 6
>PRK13189 peroxiredoxin; Provisional
Probab=100.00 E-value=2.3e-33 Score=221.42 Aligned_cols=119 Identities=34% Similarity=0.554 Sum_probs=108.4
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCC
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNT 90 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~ 90 (140)
.+++|||+||++++++++|||+.+.. .+. +.|++||||++|+||++++++...||+++|+||+|++||.+++|+
T Consensus 96 ~~i~fPllsD~~~~ia~~ygv~~~~~---~~~--~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~~- 169 (222)
T PRK13189 96 VEIEFPIIADDRGEIAKKLGMISPGK---GTN--TVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEKG- 169 (222)
T ss_pred cCcceeEEEcCccHHHHHhCCCcccc---CCC--ceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhHhhcC-
Confidence 36899999999999999999986542 122 479999999999999999999999999999999999999999998
Q ss_pred eeecCCCCCCC----ceeeCCCCCCchhcccCCC----CceEEeCCCCCceeEeccCC
Q psy1180 91 VVTPANWKPGD----KVMIHPAVKDDELPKLFPK----GVDIVDMPSGVSYVRFTNDY 140 (140)
Q Consensus 91 ~~~PanW~~G~----~~~~~p~~~~~~~~~~~~~----~~~~~~~p~~~~ylr~~~~~ 140 (140)
++|||||+||+ ++|++|+.+.++++++|++ |++++ +||||+++++
T Consensus 170 ~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~y~~~~~~~ 222 (222)
T PRK13189 170 VATPANWPPNDLIKDKVIVPPASSVEEAKKRLEAKEKGEYECY-----DWWFCYKKLE 222 (222)
T ss_pred cCcCCCCCCCCCCCCceeeCCCCCHHHHHHhhcccccCCcccc-----cceeEeeeCC
Confidence 99999999999 9999999999999999986 57666 9999999874
No 7
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.98 E-value=2.4e-32 Score=212.48 Aligned_cols=114 Identities=37% Similarity=0.699 Sum_probs=104.5
Q ss_pred CCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCCe
Q psy1180 12 DFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNTV 91 (140)
Q Consensus 12 ~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~~ 91 (140)
.++||+|+|++++++++|||+.+.. |. +.|++||||++|+|+++..++...|||++|++|+|+++|++++|+ +
T Consensus 89 ~~~fPll~D~~~~ia~~ygv~~~~~----g~--~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~~~~-~ 161 (202)
T PRK13190 89 KIPFPVIADIDKELAREYNLIDENS----GA--TVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRK-V 161 (202)
T ss_pred CceEEEEECCChHHHHHcCCccccC----Cc--EEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcC-C
Confidence 4799999999999999999987543 54 469999999999999999999999999999999999999999998 9
Q ss_pred eecCCCCCCCceeeCCCCCCchhcccCCCCceEEeCCCCCceeEecc
Q psy1180 92 VTPANWKPGDKVMIHPAVKDDELPKLFPKGVDIVDMPSGVSYVRFTN 138 (140)
Q Consensus 92 ~~PanW~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~ylr~~~ 138 (140)
+|||||++|+++|++|+.+.+++.++|++ +++. +||||++.
T Consensus 162 ~~p~~w~~g~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~ 202 (202)
T PRK13190 162 ATPANWQPGQEGIVPAPSTLDEAEMRIKE-PGAK-----TWYLKFKK 202 (202)
T ss_pred CcCCCCCcCCceecCCCCCHHHHHHHhcC-CCCC-----CceeEecC
Confidence 99999999999999999999999999964 6554 99999863
No 8
>KOG0852|consensus
Probab=99.96 E-value=6.7e-30 Score=194.95 Aligned_cols=102 Identities=31% Similarity=0.584 Sum_probs=94.8
Q ss_pred ccCCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhC
Q psy1180 9 IKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKN 88 (140)
Q Consensus 9 ~~~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~ 88 (140)
++..+++|||||.+++||+.|||+.++. |++ .|++||||++|++|++.++...+||+++|+||.++|.|++++|
T Consensus 93 Glg~~~iPllsD~~~~IsrdyGvL~~~~----G~~--lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~td~~ 166 (196)
T KOG0852|consen 93 GLGPLNIPLLSDLNHEISRDYGVLKEDE----GIA--LRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQFTDEH 166 (196)
T ss_pred CcCccccceeeccchhhHHhcCceecCC----Ccc--eeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhhhhcc
Confidence 4678999999999999999999999986 885 5999999999999999999999999999999999999999999
Q ss_pred CCeeecCCCCCCCceeeCCCCCCchhcccCCC
Q psy1180 89 NTVVTPANWKPGDKVMIHPAVKDDELPKLFPK 120 (140)
Q Consensus 89 ~~~~~PanW~~G~~~~~~p~~~~~~~~~~~~~ 120 (140)
+ ++|||||+||.++|+ |.+ ++.++||.+
T Consensus 167 g-eVcPagW~pgs~tik-p~~--~~skeyf~k 194 (196)
T KOG0852|consen 167 G-EVCPAGWKPGSDTIK-PDV--KDSKEYFSK 194 (196)
T ss_pred C-ccccCCCCCCCcccC-CCc--chhHHHHhh
Confidence 9 999999999999986 553 788999865
No 9
>PRK15000 peroxidase; Provisional
Probab=99.95 E-value=1.2e-27 Score=186.16 Aligned_cols=100 Identities=24% Similarity=0.509 Sum_probs=90.2
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCC
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNT 90 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~ 90 (140)
.+++||++||++++++++||+..++. |+ +.|++||||++|+|++++.++..+|||++|+||+|++||++++|+
T Consensus 96 ~~i~fpllsD~~~~ia~~ygv~~~~~----g~--~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~~~~~~- 168 (200)
T PRK15000 96 GPVKYAMVADVKREIQKAYGIEHPDE----GV--ALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEHG- 168 (200)
T ss_pred cccCceEEECCCcHHHHHcCCccCCC----Cc--EEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhHHhcC-
Confidence 46899999999999999999987654 65 469999999999999999999999999999999999999999998
Q ss_pred eeecCCCCCCCceeeCCCCCCchhcccCCC
Q psy1180 91 VVTPANWKPGDKVMIHPAVKDDELPKLFPK 120 (140)
Q Consensus 91 ~~~PanW~~G~~~~~~p~~~~~~~~~~~~~ 120 (140)
++|||||++|+++|.+ +.+.++++|.+
T Consensus 169 ~~~p~~w~~g~~~~~~---~~~~~~~~~~~ 195 (200)
T PRK15000 169 DVCPAQWEKGKEGMNA---SPDGVAKYLAE 195 (200)
T ss_pred CCcCCCCCCCCceecc---CHHHHHHHHHH
Confidence 9999999999999875 45777777643
No 10
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.94 E-value=2.7e-27 Score=191.35 Aligned_cols=93 Identities=32% Similarity=0.514 Sum_probs=85.5
Q ss_pred cCCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCC
Q psy1180 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNN 89 (140)
Q Consensus 10 ~~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~ 89 (140)
..+++||||||++++++++||++.+. |. +.|++||||++|+|+++++++..+|||++|+||+|+|||++++|+
T Consensus 159 ~~~l~fPlLsD~~~~iakayGv~~~~-----g~--a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~~~~g 231 (261)
T PTZ00137 159 VSPLKFPLFSDISREVSKSFGLLRDE-----GF--SHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTG 231 (261)
T ss_pred ccCcceEEEEcCChHHHHHcCCCCcC-----Cc--eecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchhhhcC
Confidence 46899999999999999999998643 65 569999999999999999999999999999999999999999998
Q ss_pred CeeecCCCCCCCceeeCCCCC
Q psy1180 90 TVVTPANWKPGDKVMIHPAVK 110 (140)
Q Consensus 90 ~~~~PanW~~G~~~~~~p~~~ 110 (140)
++|||||+||+++|++++.+
T Consensus 232 -~~cPanW~~g~~~~~~~~~~ 251 (261)
T PTZ00137 232 -NVCPVNWKQGDQAMKPDSQS 251 (261)
T ss_pred -CCcCCCCCcCCceecCCccc
Confidence 99999999999999986643
No 11
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.94 E-value=2.4e-26 Score=177.58 Aligned_cols=90 Identities=24% Similarity=0.477 Sum_probs=83.0
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCC
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNT 90 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~ 90 (140)
++++||||||++++++++||++.+.. |+ +.|++||||++|+|+++++++...+||++|+||+|++||+.++|+|
T Consensus 90 ~~l~fpllsD~~~~ia~~ygv~~~~~----g~--~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~~~~g 163 (187)
T PRK10382 90 AKIKYAMIGDPTGALTRNFDNMREDE----GL--ADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPG 163 (187)
T ss_pred cCCceeEEEcCchHHHHHcCCCcccC----Cc--eeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHhhcCC
Confidence 58999999999999999999986643 55 4699999999999999999999999999999999999999999955
Q ss_pred eeecCCCCCCCceeeC
Q psy1180 91 VVTPANWKPGDKVMIH 106 (140)
Q Consensus 91 ~~~PanW~~G~~~~~~ 106 (140)
++|||||++|+++|.+
T Consensus 164 ~~~p~~w~~~~~~~~~ 179 (187)
T PRK10382 164 EVCPAKWKEGEATLAP 179 (187)
T ss_pred eEeCCCCCcCCcceec
Confidence 9999999999999875
No 12
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.91 E-value=1.5e-24 Score=167.77 Aligned_cols=99 Identities=31% Similarity=0.570 Sum_probs=88.3
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCC
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNT 90 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~ 90 (140)
.+++||+|+|++++++++||++.... |+ +.|++||||++|+||++++++...+|+++|+||+|+++|..++++
T Consensus 98 ~~~~fpll~D~~~~ia~~ygv~~~~~----g~--~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~~~~~- 170 (199)
T PTZ00253 98 GTMAIPMLADKTKSIARSYGVLEEEQ----GV--AYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHG- 170 (199)
T ss_pred cccccceEECcHhHHHHHcCCcccCC----Cc--eEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhHHhcC-
Confidence 46899999999999999999987653 65 469999999999999999999999999999999999999999998
Q ss_pred eeecCCCCCCCceeeCCCCCCchhcccCC
Q psy1180 91 VVTPANWKPGDKVMIHPAVKDDELPKLFP 119 (140)
Q Consensus 91 ~~~PanW~~G~~~~~~p~~~~~~~~~~~~ 119 (140)
+.||+||++|+++|++++ +.++++|.
T Consensus 171 ~~cp~~w~~g~~~~~~~~---~~~~~~~~ 196 (199)
T PTZ00253 171 EVCPANWKKGDPTMKPDP---NKSKEGFF 196 (199)
T ss_pred CEeCCCCCcCCccccCCh---HHHHHHhh
Confidence 999999999999998743 55666653
No 13
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.87 E-value=1.1e-21 Score=150.69 Aligned_cols=91 Identities=24% Similarity=0.451 Sum_probs=81.7
Q ss_pred cCCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCC
Q psy1180 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNN 89 (140)
Q Consensus 10 ~~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~ 89 (140)
+.+++||+++|++++++++||+..... |+ +.|++||||++|+|+++++.+...+|+++++|+.|+++|+++||+
T Consensus 89 ~~~l~fpllsD~~~~~a~~~gv~~~~~----g~--~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 162 (187)
T TIGR03137 89 IGKITYPMLGDPTGVLTRNFGVLIEEA----GL--ADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYVAAHP 162 (187)
T ss_pred ccCcceeEEECCccHHHHHhCCcccCC----Cc--eeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcC
Confidence 357999999999999999999986543 54 469999999999999999988888999999999999999999995
Q ss_pred CeeecCCCCCCCceeeC
Q psy1180 90 TVVTPANWKPGDKVMIH 106 (140)
Q Consensus 90 ~~~~PanW~~G~~~~~~ 106 (140)
|++|||||++|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~ 179 (187)
T TIGR03137 163 GEVCPAKWKEGAETLKP 179 (187)
T ss_pred CeeeCCCCCcCCccccC
Confidence 59999999999999864
No 14
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.80 E-value=3e-19 Score=134.75 Aligned_cols=83 Identities=40% Similarity=0.725 Sum_probs=75.7
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCC
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNT 90 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~ 90 (140)
.+++||+++|++++++++||+..... |. +.|++||||++|+|++.++.....+++.+++++.|+.++.+.+|+
T Consensus 91 ~~~~f~~l~D~~~~~~~~~gv~~~~~----~~--~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~- 163 (173)
T cd03015 91 GKINFPLLADPKKKISRDYGVLDEEE----GV--ALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEHG- 163 (173)
T ss_pred cCcceeEEECCchhHHHHhCCccccC----Cc--eeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhhhcC-
Confidence 57899999999999999999976542 44 469999999999999999988888899999999999999999999
Q ss_pred eeecCCCCCC
Q psy1180 91 VVTPANWKPG 100 (140)
Q Consensus 91 ~~~PanW~~G 100 (140)
++||+||++|
T Consensus 164 ~~~~~~~~~~ 173 (173)
T cd03015 164 EVCPANWKPG 173 (173)
T ss_pred CCcCCCCCCC
Confidence 9999999998
No 15
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.9e-15 Score=113.25 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=60.8
Q ss_pred cCCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhH
Q psy1180 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQ 83 (140)
Q Consensus 10 ~~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq 83 (140)
.++|+||||||++++|+++||++.+.......+..+.|+|||||++|+|+++| ....+..|++|++++|++++
T Consensus 84 k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 84 KHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred HhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHHHHHhc
Confidence 37899999999999999999999876543222223579999999999999999 56677779999999998875
No 16
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=99.59 E-value=3e-16 Score=93.63 Aligned_cols=40 Identities=53% Similarity=0.952 Sum_probs=36.1
Q ss_pred hhHhhhhCCCeeecCCCCCCCceeeCCCCCCchhcccCCCC
Q psy1180 81 SLQLFYKNNTVVTPANWKPGDKVMIHPAVKDDELPKLFPKG 121 (140)
Q Consensus 81 alq~~~~~~~~~~PanW~~G~~~~~~p~~~~~~~~~~~~~~ 121 (140)
|||++++++ ++|||||+||+++|++|++|.+++.++|.+|
T Consensus 1 ALQ~~d~~~-v~tPanW~pGd~~ivpp~~s~~~a~k~~~~g 40 (40)
T PF10417_consen 1 ALQFTDKHG-VATPANWKPGDDVIVPPPVSQEEAKKRFPEG 40 (40)
T ss_dssp HHHHHHHHS-SBBCTTTCTTSGEBE-TTSSTTHHHHHHHCT
T ss_pred CceehhhhC-cccCcCCCCCCCeEcCCCCCHHHHHHHccCC
Confidence 689999998 9999999999999999999999999988653
No 17
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.04 E-value=8.1e-10 Score=83.27 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=53.5
Q ss_pred CCCc-eeEEEcC-ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEcc-CCCCccHHHHHHHHHh
Q psy1180 11 GDFP-FAIIGDE-NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYP-ASTGRSVDEILRVLDS 81 (140)
Q Consensus 11 ~~l~-FPLlsD~-~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~-~~~gr~~~EiLr~l~a 81 (140)
++++ ||++||. +++++++||+..... ...|+ +.|++||||++|+|++.++.+ ....++++++|++|++
T Consensus 97 ~~~~~~~~lsD~~~~~~~~~~gv~~~~~-~~~g~--~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 97 EGLENVITLSDFRDHSFGKAYGVAIAEG-PLKGL--LARAVFVLDENNKVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred CCCCCceEeecCCccHHHHHhCCeeccc-ccCCc--eeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 4666 8999994 669999999975421 11255 579999999999999999854 4677799999998864
No 18
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.96 E-value=1.8e-09 Score=80.73 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=43.3
Q ss_pred CceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCc
Q psy1180 13 FPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70 (140)
Q Consensus 13 l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr 70 (140)
++||||||++++++++|||+.+......| ..+.|++|||| +|+|+++++.+...+.
T Consensus 90 ~~f~lLsD~~~~~~~~ygv~~~~~~~~~~-~~~~R~~fiId-~g~I~~~~~~~~~~~~ 145 (155)
T cd03013 90 DKIRFLADGNGEFTKALGLTLDLSAAGGG-IRSKRYALIVD-DGKVKYLFVEEDPGDV 145 (155)
T ss_pred CcEEEEECCCHHHHHHcCCCccccccCCc-ceeeeEEEEEC-CCEEEEEEEecCCCCc
Confidence 38999999999999999998664311111 12579999999 6999999998776544
No 19
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.85 E-value=1e-08 Score=75.30 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=51.5
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
++++||+++|++++++++||+.........+.....|++||||++|+|++++.. ...+++.+++|++++
T Consensus 85 ~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g-~~~~~~~~~~~~~~~ 153 (154)
T PRK09437 85 ELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDK-FKTSNHHDVVLDYLK 153 (154)
T ss_pred hCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcC-CCcchhHHHHHHHHh
Confidence 578999999999999999998754321111111135899999999999999754 355677888888775
No 20
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.83 E-value=1.1e-08 Score=74.13 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=55.4
Q ss_pred CCCceeEEEcCc--cHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 11 GDFPFAIIGDEN--RDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 11 ~~l~FPLlsD~~--~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
++++||+++|.+ +++++.||+..... |+ +.|++||||++|+|++.+..+...+++..++.++|++
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~g~~~~~~----~~--~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd03018 83 NGLTFPLLSDFWPHGEVAKAYGVFDEDL----GV--AERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred cCCCceEecCCCchhHHHHHhCCccccC----CC--ccceEEEECCCCEEEEEEecCCcccccchhHHHHhhC
Confidence 578999999988 99999999985432 43 4689999999999999999988888888888888764
No 21
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.82 E-value=1.1e-08 Score=73.26 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=50.7
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHH
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILR 77 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr 77 (140)
++++||+++|++++++++||+...... |...+.|++||||++|+|++++... ..+++++|+|+
T Consensus 78 ~~~~~~~l~D~~~~~~~~~gv~~~~~~---~~~~~~p~~~lid~~G~v~~~~~g~-~~~~~~~~~~~ 140 (140)
T cd03017 78 YGLPFPLLSDPDGKLAKAYGVWGEKKK---KYMGIERSTFLIDPDGKIVKVWRKV-KPKGHAEEVLE 140 (140)
T ss_pred hCCCceEEECCccHHHHHhCCcccccc---ccCCcceeEEEECCCCEEEEEEecC-CccchHHHHhC
Confidence 578999999999999999999864221 1122469999999999999998554 58999999874
No 22
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.80 E-value=1.5e-08 Score=73.31 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=48.7
Q ss_pred CceeEEEcCc-cHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccC-CCCccHHHHHH
Q psy1180 13 FPFAIIGDEN-RDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPA-STGRSVDEILR 77 (140)
Q Consensus 13 l~FPLlsD~~-~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~-~~gr~~~EiLr 77 (140)
.+||+++|.. ++++++||+..+.. |+ +.|++||||++|+|++.++... ...++++++|+
T Consensus 82 ~~~~~l~D~~~~~~~~~~gv~~~~~----~~--~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 82 DNVTTLSDFRDHSFGKAYGVLIKDL----GL--LARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred CCceEeecCcccHHHHHhCCeeccC----Cc--cceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 3799999996 99999999986543 54 4699999999999999998654 56678888775
No 23
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.55 E-value=3.5e-07 Score=68.41 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=50.0
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCC-----ccHHHHHHHHHhhHhh
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG-----RSVDEILRVLDSLQLF 85 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~g-----r~~~EiLr~l~alq~~ 85 (140)
++++||+++|+++.+++.||+. + .|++||||++|+|++........+ .+.+++.++|+++...
T Consensus 87 ~~~~~~~l~D~~~~~~~~~~v~--------~----~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 87 HGYPFPYLLDETQEVAKAYGAA--------C----TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred CCCCceEEECCchHHHHHcCCC--------c----CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 5788999999999999999985 2 278999999999999876554332 2467888888877543
No 24
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.54 E-value=1.6e-07 Score=67.50 Aligned_cols=54 Identities=26% Similarity=0.437 Sum_probs=41.1
Q ss_pred CCCceeEEEcCccHHHHHcCCCccccc-----------------ccCccceeeeEEEEECCCCcEEEEEEc
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENK-----------------NNLETAITVRAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~-----------------~~~G~~~~~RatFIIDpdG~Ir~~~~~ 64 (140)
++++||+++|++++++++||+...... ...|.....|++||||++|+|++.++.
T Consensus 78 ~~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 KFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred cCCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 678999999999999999999643210 011222357999999999999998753
No 25
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.48 E-value=5.6e-07 Score=64.27 Aligned_cols=60 Identities=30% Similarity=0.554 Sum_probs=46.7
Q ss_pred CCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHH
Q psy1180 12 DFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDE 74 (140)
Q Consensus 12 ~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~E 74 (140)
..+||+++|+++.++++||+...... +...+.|++||||++|+|++++..+.....+.+.
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~---~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~~ 138 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSA---GGGLAARATFIIDPDGKIRYVEVEPLPTGRNAEE 138 (140)
T ss_pred CCCceEEECCChHHHHHcCCcccccc---ccCceeEEEEEECCCCcEEEEEecCCCCCcChHh
Confidence 78999999999999999999854321 1112579999999999999999887764444443
No 26
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.31 E-value=1.2e-06 Score=62.46 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=38.0
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEcc
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~ 65 (140)
++++||+++|++++++++||+. ++ |++||||++|+|++++..+
T Consensus 83 ~~~~~p~~~D~~~~~~~~~~v~--------~~----P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 83 YGITYPVANDNDYATWRAYGNQ--------YW----PALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred cCCCCCEEECCchHHHHHhCCC--------cC----CeEEEECCCCcEEEEEecC
Confidence 6799999999999999999984 43 8999999999999998643
No 27
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.31 E-value=9.1e-07 Score=61.81 Aligned_cols=45 Identities=29% Similarity=0.657 Sum_probs=38.1
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEE
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLS 61 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~ 61 (140)
++++||+++|.+++++++||+..... . ...|++||||++|+|+|+
T Consensus 80 ~~~~~~~~~D~~~~~~~~~~~~~~~~----~--~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 80 YGLPFPVLSDPDGELAKAFGIEDEKD----T--LALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HTCSSEEEEETTSHHHHHTTCEETTT----S--EESEEEEEEETTSBEEEE
T ss_pred hccccccccCcchHHHHHcCCccccC----C--ceEeEEEEECCCCEEEeC
Confidence 46899999999999999999986541 1 146999999999999985
No 28
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.23 E-value=3.1e-06 Score=61.22 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=45.7
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCC-CccHHHH
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPAST-GRSVDEI 75 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~-gr~~~Ei 75 (140)
++++||+++|.+.+++++||+....... .|+ ..+.+||||++|+|++++...... ..+++++
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~--~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~~ 145 (146)
T PF08534_consen 83 YGINFPVLSDPDGALAKALGVTIMEDPG-NGF--GIPTTFLIDKDGKVVYRHVGPDPDEESDLEAV 145 (146)
T ss_dssp TTTTSEEEEETTSHHHHHTTCEEECCTT-TTS--SSSEEEEEETTSBEEEEEESSBTTSHHSHHHH
T ss_pred hCCCceEEechHHHHHHHhCCccccccc-cCC--eecEEEEEECCCEEEEEEeCCCCCCCCChhhc
Confidence 6789999999999999999975322111 132 359999999999999999877653 2244444
No 29
>PLN02412 probable glutathione peroxidase
Probab=98.03 E-value=5.4e-06 Score=62.46 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=46.1
Q ss_pred CCCceeEEEc--Cc-cHHHHHcCCCccccccc--CccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 11 GDFPFAIIGD--EN-RDLAVKLDLLDEENKNN--LETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 11 ~~l~FPLlsD--~~-~~va~~yGv~~~~~~~~--~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
++++||+++| .+ ..+++.|+.+..+.... .++. ..|++||||++|+|++++.... +.+++.+.|+++
T Consensus 92 ~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~-~~p~tflId~~G~vv~~~~g~~----~~~~l~~~i~~~ 163 (167)
T PLN02412 92 FKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIK-WNFTKFLVSKEGKVVQRYAPTT----SPLKIEKDIQNL 163 (167)
T ss_pred cCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcC-CCCeeEEECCCCcEEEEECCCC----CHHHHHHHHHHH
Confidence 6799999984 56 48888888664432110 1121 2589999999999999986543 456677777665
No 30
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.00 E-value=2.3e-05 Score=59.82 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=37.9
Q ss_pred CCCceeE-EEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccC
Q psy1180 11 GDFPFAI-IGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPA 66 (140)
Q Consensus 11 ~~l~FPL-lsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~ 66 (140)
++++||+ ++|++++++++||+. |+ +++||||++|+|++.+..+.
T Consensus 119 ~~~~~~~~~~D~~~~~~~~~gv~--------~~----P~t~vid~~G~i~~~~~G~~ 163 (185)
T PRK15412 119 LGNPYALSLFDGDGMLGLDLGVY--------GA----PETFLIDGNGIIRYRHAGDL 163 (185)
T ss_pred cCCCCceEEEcCCccHHHhcCCC--------cC----CeEEEECCCceEEEEEecCC
Confidence 5678994 899999999999986 43 89999999999999988764
No 31
>KOG0855|consensus
Probab=97.99 E-value=2.2e-05 Score=60.59 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=55.4
Q ss_pred cCCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 10 ~~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
.++++|.||||+.+++.+.+|+-.... .|. +.|+.||.|+.|..+.+.....+..-+++|.++.|.+
T Consensus 144 KqnlPYhLLSDpk~e~ik~lGa~k~p~---gg~--~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~ 210 (211)
T KOG0855|consen 144 KQNLPYHLLSDPKNEVIKDLGAPKDPF---GGL--PGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA 210 (211)
T ss_pred hccCCeeeecCcchhHHHHhCCCCCCC---CCc--ccceEEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence 589999999999999999999875332 143 6799999999888777776677888899999988764
No 32
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.98 E-value=2.4e-05 Score=58.98 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCCcee-EEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 11 GDFPFA-IIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 11 ~~l~FP-LlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
++++|| ++.|++++++++||+. |+ |++|+||++|+|++.+.... +.+++...++.
T Consensus 114 ~~~~f~~v~~D~~~~~~~~~~v~--------~~----P~~~~id~~G~i~~~~~G~~----~~~~l~~~l~~ 169 (173)
T TIGR00385 114 LGNPYQAILIDPNGKLGLDLGVY--------GA----PETFLVDGNGVILYRHAGPL----NNEVWTEGFLP 169 (173)
T ss_pred cCCCCceEEECCCCchHHhcCCe--------eC----CeEEEEcCCceEEEEEeccC----CHHHHHHHHHH
Confidence 567898 5689999999999985 43 89999999999999987642 34555555543
No 33
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.97 E-value=3.5e-05 Score=57.00 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=44.9
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
.+++||++.|.+++++++||+. + .+++||||++|+|+..+... .+.+++.+.|+++
T Consensus 116 ~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~g~i~~~~~g~----~~~~~l~~~l~~~ 171 (173)
T PRK03147 116 YGLTFPVAIDKGRQVIDAYGVG--------P----LPTTFLIDKDGKVVKVITGE----MTEEQLEEYLEKI 171 (173)
T ss_pred hCCCceEEECCcchHHHHcCCC--------C----cCeEEEECCCCcEEEEEeCC----CCHHHHHHHHHHh
Confidence 5789999999999999999984 3 38999999999999887554 3456666666654
No 34
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.96 E-value=1.9e-05 Score=61.17 Aligned_cols=58 Identities=10% Similarity=0.177 Sum_probs=43.6
Q ss_pred CCcee---EEEcCccHHHHHcCCCcccccccCccceeeeEE-EEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 12 DFPFA---IIGDENRDLAVKLDLLDEENKNNLETAITVRAV-YIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 12 ~l~FP---LlsD~~~~va~~yGv~~~~~~~~~G~~~~~Rat-FIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
+..|| ++.|.++.++.+||+. |+ +.+ ||||++|+|++.+....+.. .+++++..|+++
T Consensus 121 ~~~~P~~~vllD~~g~v~~~~gv~--------~~----P~T~fVIDk~GkVv~~~~G~l~~e-e~e~~~~li~~l 182 (184)
T TIGR01626 121 KKENPWSQVVLDDKGAVKNAWQLN--------SE----DSAIIVLDKTGKVKFVKEGALSDS-DIQTVISLVNGL 182 (184)
T ss_pred cccCCcceEEECCcchHHHhcCCC--------CC----CceEEEECCCCcEEEEEeCCCCHH-HHHHHHHHHHHH
Confidence 66788 9999999999999986 43 455 99999999999988764322 345555555543
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.86 E-value=2.2e-05 Score=57.78 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=39.7
Q ss_pred CCCceeEEEcC---ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 11 GDFPFAIIGDE---NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 11 ~~l~FPLlsD~---~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
++++||+++|. +...+.+|+...... .+..--.|++||||++|+|++.+..+. +.+++.+.|+.|
T Consensus 85 ~~~~fp~~~d~~~~~~~~~~~~~~~~~~~---~~~p~~~~~tflID~~G~v~~~~~g~~----~~~~l~~~i~~l 152 (153)
T TIGR02540 85 YGVTFPMFSKIKILGSEAEPAFRFLVDSS---KKEPRWNFWKYLVNPEGQVVKFWRPEE----PVEEIRPEITAL 152 (153)
T ss_pred cCCCCCccceEecCCCCCCcHHHHHHhcC---CCCCCCccEEEEEcCCCcEEEEECCCC----CHHHHHHHHHHh
Confidence 57899999983 333333333221110 011101478999999999999986653 456777766654
No 36
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.76 E-value=2.3e-05 Score=59.81 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=35.1
Q ss_pred CCCceeEEEc--CccHH-HHHcCCCccccc-------ccCccceeeeEEEEECCCCcEEEEEEccC
Q psy1180 11 GDFPFAIIGD--ENRDL-AVKLDLLDEENK-------NNLETAITVRAVYIIGPDRKLKLSIVYPA 66 (140)
Q Consensus 11 ~~l~FPLlsD--~~~~v-a~~yGv~~~~~~-------~~~G~~~~~RatFIIDpdG~Ir~~~~~~~ 66 (140)
++++||+++| .+++. ++.|+++..... ...+++ ..|++||||++|+|++.+....
T Consensus 104 ~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP-~~~~tflID~~G~Iv~~~~g~~ 168 (183)
T PTZ00256 104 FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIP-WNFAKFLIDGQGKVVKYFSPKV 168 (183)
T ss_pred cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccC-cceEEEEECCCCCEEEEECCCC
Confidence 5789999987 55544 456644332210 001222 2578999999999999987653
No 37
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.62 E-value=0.00014 Score=51.35 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=36.6
Q ss_pred CCCcee-EEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccC
Q psy1180 11 GDFPFA-IIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPA 66 (140)
Q Consensus 11 ~~l~FP-LlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~ 66 (140)
++++|| +++|.++++++.||+. ++ |++||||++|+|++.+....
T Consensus 77 ~~~~~~~~~~D~~~~~~~~~~v~--------~~----P~~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 77 HGNPYAAVGFDPDGRVGIDLGVY--------GV----PETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred cCCCCceEEECCcchHHHhcCCC--------CC----CeEEEECCCceEEEEEeccC
Confidence 456775 6799999999999986 43 88999999999999887643
No 38
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.61 E-value=8.6e-05 Score=53.08 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCceeEEEcCc---cHHHHHcCCCcccccc---cCccceeeeEEEEECCCCcEEEEE
Q psy1180 11 GDFPFAIIGDEN---RDLAVKLDLLDEENKN---NLETAITVRAVYIIGPDRKLKLSI 62 (140)
Q Consensus 11 ~~l~FPLlsD~~---~~va~~yGv~~~~~~~---~~G~~~~~RatFIIDpdG~Ir~~~ 62 (140)
++.+||+++|.. .+++++||+....... ..++. ..|++||||++|+|++++
T Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 84 FGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVD-HSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred hCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEe-ccceEEEECCCCCEEEee
Confidence 457899999975 8999999987543110 11222 358999999999999986
No 39
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.50 E-value=0.00038 Score=48.61 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=35.4
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEc
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~ 64 (140)
++++||+++|.+.++++.||+. + .+++||||++| |+++...
T Consensus 71 ~~~~~~~~~d~~~~~~~~~~i~--------~----~P~~~vid~~g-i~~~~~g 111 (123)
T cd03011 71 KGYGFPVINDPDGVISARWGVS--------V----TPAIVIVDPGG-IVFVTTG 111 (123)
T ss_pred cCCCccEEECCCcHHHHhCCCC--------c----ccEEEEEcCCC-eEEEEec
Confidence 5689999999999999999975 3 38999999999 8887754
No 40
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.48 E-value=6e-05 Score=55.47 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=34.8
Q ss_pred CCCceeEEEcC--ccH-HHHHcCCCccccc----ccCccceeeeEEEEECCCCcEEEEEEccC
Q psy1180 11 GDFPFAIIGDE--NRD-LAVKLDLLDEENK----NNLETAITVRAVYIIGPDRKLKLSIVYPA 66 (140)
Q Consensus 11 ~~l~FPLlsD~--~~~-va~~yGv~~~~~~----~~~G~~~~~RatFIIDpdG~Ir~~~~~~~ 66 (140)
++++||+++|. ++. +++.|+++..... ...++ .|++||||++|+|++++..+.
T Consensus 84 ~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~ttflId~~G~i~~~~~G~~ 143 (152)
T cd00340 84 YGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKW---NFTKFLVDRDGEVVKRFAPTT 143 (152)
T ss_pred cCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCcccc---ccEEEEECCCCcEEEEECCCC
Confidence 57899999974 343 5677775321110 00111 479999999999999987653
No 41
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.41 E-value=0.00028 Score=54.07 Aligned_cols=55 Identities=7% Similarity=0.088 Sum_probs=37.4
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
++++||.+. .+++++++||+. + .+.+||||++|+|++. ......++++++++.++
T Consensus 125 ~~~~~~~~~-~~~~i~~~y~v~--------~----~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 125 HELGGERYV-VSAEIGMAFQVG--------K----IPYGVLLDQDGKIRAK--GLTNTREHLESLLEADR 179 (189)
T ss_pred cCCCcceee-chhHHHHhccCC--------c----cceEEEECCCCeEEEc--cCCCCHHHHHHHHHHHH
Confidence 456666554 467888888864 3 3789999999999985 33334445666666554
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.26 E-value=0.00069 Score=45.13 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=34.9
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEE
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 62 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~ 62 (140)
++++|+++.|.+.++++.||+. + .+.+||+|++|+|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~--------~----~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 75 YGITFPVLLDPDGELAKAYGVR--------G----LPTTFLIDRDGRIRARH 114 (116)
T ss_pred cCCCcceEEcCcchHHHhcCcC--------c----cceEEEECCCCcEEEEe
Confidence 4589999999999999999986 3 37899999999998875
No 43
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.01 E-value=0.0011 Score=53.21 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=41.8
Q ss_pred CCCceeEEEc--Ccc-HHHHHcCCCcccccccCc-cceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 11 GDFPFAIIGD--ENR-DLAVKLDLLDEENKNNLE-TAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 11 ~~l~FPLlsD--~~~-~va~~yGv~~~~~~~~~G-~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
++++||+++| .++ .++..|+.+........| .....+.+||||++|+|++++..+. +.+++.+.|+++
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~----~~~~le~~I~~l 233 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT----SPFQIEKDIQKL 233 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC----CHHHHHHHHHHH
Confidence 5789999965 444 677777654211100001 0001378999999999999886542 456676777655
No 44
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=96.95 E-value=0.0021 Score=45.06 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=44.2
Q ss_pred ccccccCccCCCceeEEEcCccHHHHHcCCCccccc-------------------------cc-CccceeeeEEEEECCC
Q psy1180 2 IKNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENK-------------------------NN-LETAITVRAVYIIGPD 55 (140)
Q Consensus 2 i~~~~~~~~~~l~FPLlsD~~~~va~~yGv~~~~~~-------------------------~~-~G~~~~~RatFIIDpd 55 (140)
|++|+. ....+|||.+|+++++-+++|+...... +. .|-..-.-++||+|++
T Consensus 27 ~~~f~~--~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~ 104 (115)
T PF13911_consen 27 IEKFCE--LTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPG 104 (115)
T ss_pred HHHHHh--ccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCC
Confidence 345662 3788999999999999999999752110 11 2333345689999999
Q ss_pred CcEEEEEEc
Q psy1180 56 RKLKLSIVY 64 (140)
Q Consensus 56 G~Ir~~~~~ 64 (140)
|+|+|.+..
T Consensus 105 g~v~~~hr~ 113 (115)
T PF13911_consen 105 GKVLYEHRD 113 (115)
T ss_pred CeEEEEEec
Confidence 999998853
No 45
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.84 E-value=0.0066 Score=47.03 Aligned_cols=61 Identities=8% Similarity=0.092 Sum_probs=42.9
Q ss_pred CCCceeEEEc-CccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEE-EEEccCCCCccHHHHHHHHHhhHhh
Q psy1180 11 GDFPFAIIGD-ENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKL-SIVYPASTGRSVDEILRVLDSLQLF 85 (140)
Q Consensus 11 ~~l~FPLlsD-~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~-~~~~~~~~gr~~~EiLr~l~alq~~ 85 (140)
..+.||++.| ..+.+.+.||.+.. + .+++||||++|+|++ ++... .+.+++.+.++.+-..
T Consensus 111 ~~~~fPv~~dd~~~~~~~~~g~~~~------~----iPttfLId~~G~i~~~~~~G~----~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 111 GDTAFPEALPAPPDVMQTFFPNIPV------A----TPTTFLVNVNTLEALPLLQGA----TDAAGFMARMDTVLQM 173 (181)
T ss_pred CCCCCceEecCchhHHHHHhCCCCC------C----CCeEEEEeCCCcEEEEEEECC----CCHHHHHHHHHHHHhh
Confidence 3589999996 67788889986321 3 499999999999975 56554 2455666666655433
No 46
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0018 Score=49.04 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=41.9
Q ss_pred ccccCccCCCc-eeEEEcC-ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEcc
Q psy1180 4 NYCLDIKGDFP-FAIIGDE-NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 4 ~~~~~~~~~l~-FPLlsD~-~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~ 65 (140)
+||+ -++|. --.+||. ++++.++||+...+-. =.|+ ..|++|++|.+|+|.|..+-+
T Consensus 92 RfC~--aeGi~nv~~lSd~r~~~Fge~yGv~I~egp-L~gL--lARaV~V~De~g~V~y~elv~ 150 (158)
T COG2077 92 RFCG--AEGIENVITLSDFRDRAFGENYGVLINEGP-LAGL--LARAVFVLDENGKVTYSELVP 150 (158)
T ss_pred hhhh--hcCcccceEhhhhhhhhhhHhhCEEecccc-ccCe--eeeEEEEEcCCCcEEEEEccc
Confidence 4664 25553 7789997 5779999999865410 0155 469999999999999998754
No 47
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.67 E-value=0.005 Score=54.67 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=42.5
Q ss_pred ceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 14 PFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 14 ~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
.||++.|.+.+++++||+. ++ +++||||++|+|+....... +.+++.+.|+.
T Consensus 120 ~~pV~~D~~~~lak~fgV~--------gi----PTt~IIDkdGkIV~~~~G~~----~~eeL~a~Ie~ 171 (521)
T PRK14018 120 KLPVLTDNGGTLAQSLNIS--------VY----PSWAIIGKDGDVQRIVKGSI----SEAQALALIRN 171 (521)
T ss_pred ccceeccccHHHHHHcCCC--------Cc----CeEEEEcCCCeEEEEEeCCC----CHHHHHHHHHH
Confidence 5799999999999999986 43 89999999999999987753 45666666663
No 48
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.65 E-value=0.0067 Score=47.05 Aligned_cols=32 Identities=6% Similarity=0.065 Sum_probs=22.2
Q ss_pred eEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 47 RAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
+++||||++|+|++.+.... +.+++.+.|+.|
T Consensus 146 ~~tflID~~G~iv~~~~g~~----~~~~l~~~I~~l 177 (199)
T PTZ00056 146 FGKFLVNKSGNVVAYFSPRT----EPLELEKKIAEL 177 (199)
T ss_pred CEEEEECCCCcEEEEeCCCC----CHHHHHHHHHHH
Confidence 58999999999998775432 344555555544
No 49
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.38 E-value=0.0056 Score=42.04 Aligned_cols=37 Identities=5% Similarity=0.161 Sum_probs=27.7
Q ss_pred CCC-ceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEE
Q psy1180 11 GDF-PFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLS 61 (140)
Q Consensus 11 ~~l-~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~ 61 (140)
+++ .||.+.+ .+++++||+. + .+++||||++|+|++.
T Consensus 74 ~~~~~~p~~~~--~~~~~~~~~~--------~----~P~~~vid~~G~v~~~ 111 (114)
T cd02967 74 HGLEAFPYVLS--AELGMAYQVS--------K----LPYAVLLDEAGVIAAK 111 (114)
T ss_pred hCCCCCcEEec--HHHHhhcCCC--------C----cCeEEEECCCCeEEec
Confidence 455 3777763 4678888763 3 4999999999999885
No 50
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.15 E-value=0.016 Score=55.27 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=43.6
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
.+++||++.|.+.+++++||+. |+ +++||||++|+|++.+.... +.+++.+.|+++
T Consensus 480 ~~i~~pvv~D~~~~~~~~~~V~--------~i----Pt~ilid~~G~iv~~~~G~~----~~~~l~~~l~~~ 535 (1057)
T PLN02919 480 YNISHPVVNDGDMYLWRELGVS--------SW----PTFAVVSPNGKLIAQLSGEG----HRKDLDDLVEAA 535 (1057)
T ss_pred hCCCccEEECCchHHHHhcCCC--------cc----ceEEEECCCCeEEEEEeccc----CHHHHHHHHHHH
Confidence 5689999999999999999975 54 89999999999999865532 345555555543
No 51
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.10 E-value=0.0064 Score=45.43 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=26.9
Q ss_pred eEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEE
Q psy1180 16 AIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLS 61 (140)
Q Consensus 16 PLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~ 61 (140)
|+..+.+.+++++||+. |+ +++||||++|+|+..
T Consensus 95 p~~~~~~~~l~~~y~v~--------~i----Pt~vlId~~G~Vv~~ 128 (146)
T cd03008 95 PFEDEFRRELEAQFSVE--------EL----PTVVVLKPDGDVLAA 128 (146)
T ss_pred cccchHHHHHHHHcCCC--------CC----CEEEEECCCCcEEee
Confidence 44555567899999875 54 899999999999875
No 52
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=95.57 E-value=0.0079 Score=42.59 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEE
Q psy1180 12 DFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLS 61 (140)
Q Consensus 12 ~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~ 61 (140)
.++|+. +|....++++||+. + .+++||||++|+|+..
T Consensus 79 ~~~~~~-~~~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~ 115 (131)
T cd03009 79 AVPFSD-RERRSRLNRTFKIE--------G----IPTLIILDADGEVVTT 115 (131)
T ss_pred EcccCC-HHHHHHHHHHcCCC--------C----CCEEEEECCCCCEEcc
Confidence 345554 56667899999875 4 3899999999999765
No 53
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=93.71 E-value=0.099 Score=39.85 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=39.3
Q ss_pred CCcee-EEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 12 DFPFA-IIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 12 ~l~FP-LlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
..++. ++-|.++.+.+++++-... -+++|+|++|+|++..-..+ +-+|+-++++
T Consensus 101 ~~p~s~~vlD~~G~~~~aW~L~~~~-----------SaiiVlDK~G~V~F~k~G~L----s~~Ev~qVi~ 155 (160)
T PF09695_consen 101 EFPWSQFVLDSNGVVRKAWQLQEES-----------SAIIVLDKQGKVQFVKEGAL----SPAEVQQVIA 155 (160)
T ss_pred hCCCcEEEEcCCCceeccccCCCCC-----------ceEEEEcCCccEEEEECCCC----CHHHHHHHHH
Confidence 45566 6899999999999987432 46889999999999876553 3344444443
No 54
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=92.48 E-value=0.44 Score=35.63 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=20.5
Q ss_pred eeEEEEECCCCcEEE-EEEccCCCCccHHHHHHHHHh
Q psy1180 46 VRAVYIIGPDRKLKL-SIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~-~~~~~~~~gr~~~EiLr~l~a 81 (140)
.+++||||++|.++. +..... +.+++.+.++.
T Consensus 119 iPTt~LID~~G~~i~~~~~G~~----s~~~l~~~I~~ 151 (153)
T TIGR02738 119 TPATFLVNVNTRKAYPVLQGAV----DEAELANRMDE 151 (153)
T ss_pred CCeEEEEeCCCCEEEEEeeccc----CHHHHHHHHHH
Confidence 489999999988644 444432 34455555543
No 55
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=91.59 E-value=0.56 Score=31.81 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=27.0
Q ss_pred cHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHH
Q psy1180 23 RDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVL 79 (140)
Q Consensus 23 ~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l 79 (140)
.++++.||+. |. ++++++|++|++.+....- .+.+|++.+|
T Consensus 72 ~~l~~~~~v~--------gt----Pt~~~~d~~G~~v~~~~G~----~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVN--------GT----PTIVFLDKDGKIVYRIPGY----LSPEELLKML 112 (112)
T ss_dssp HHHHHHTT----------SS----SEEEECTTTSCEEEEEESS------HHHHHHHH
T ss_pred HHHHHHcCCC--------cc----CEEEEEcCCCCEEEEecCC----CCHHHHHhhC
Confidence 3577778765 54 8999999999988776543 2456666544
No 56
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=91.42 E-value=0.072 Score=35.33 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=21.6
Q ss_pred EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcE
Q psy1180 19 GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKL 58 (140)
Q Consensus 19 sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~I 58 (140)
.+...++.+.||+. + .+.++|||++|+|
T Consensus 68 ~~~~~~l~~~~~i~--------~----iP~~~lld~~G~I 95 (95)
T PF13905_consen 68 DDNNSELLKKYGIN--------G----IPTLVLLDPDGKI 95 (95)
T ss_dssp THHHHHHHHHTT-T--------S----SSEEEEEETTSBE
T ss_pred cchHHHHHHHCCCC--------c----CCEEEEECCCCCC
Confidence 34467888888876 4 3899999999987
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=91.06 E-value=0.96 Score=33.02 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=37.8
Q ss_pred CceeEEE-cCc--cHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhH
Q psy1180 13 FPFAIIG-DEN--RDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQ 83 (140)
Q Consensus 13 l~FPLls-D~~--~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq 83 (140)
+.|-.+. |.+ .+++++||+. |+ ++++|+|++|+++...... ...+++.+.|+++.
T Consensus 53 ~~~v~v~vd~~~~~~~~~~~~V~--------~i----Pt~v~~~~~G~~v~~~~G~----~~~~~l~~~l~~l~ 110 (142)
T cd02950 53 VNFVMLNVDNPKWLPEIDRYRVD--------GI----PHFVFLDREGNEEGQSIGL----QPKQVLAQNLDALV 110 (142)
T ss_pred eeEEEEEcCCcccHHHHHHcCCC--------CC----CEEEEECCCCCEEEEEeCC----CCHHHHHHHHHHHH
Confidence 4554442 332 3788888875 43 8999999999999887653 23566777777665
No 58
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=90.94 E-value=0.68 Score=32.37 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=32.3
Q ss_pred ccHHHHHcCCCcccccccCccceeeeEEEEECCC-CcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 22 NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPD-RKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 22 ~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpd-G~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
..+++++||+. + .++++++|++ |++....... .+.+++.+.|+.+
T Consensus 73 ~~~l~~~~~v~--------~----~Pt~~~~~~~gg~~~~~~~G~----~~~~~~~~~l~~~ 118 (125)
T cd02951 73 EKELARKYRVR--------F----TPTVIFLDPEGGKEIARLPGY----LPPDEFLAYLEYV 118 (125)
T ss_pred HHHHHHHcCCc--------c----ccEEEEEcCCCCceeEEecCC----CCHHHHHHHHHHH
Confidence 36888888865 4 3899999999 8998876543 3446666666654
No 59
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=89.85 E-value=0.94 Score=36.62 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=42.2
Q ss_pred CceeEEEcC-ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 13 FPFAIIGDE-NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 13 l~FPLlsD~-~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
..+|++.|. ++...++||.+ |.|- ||| .+|+|.|.- .+-+.+=+.+|+..+|+++
T Consensus 181 ~~~pi~vD~mdN~~~~~YgA~------------PeRl-yIi-~~gkv~Y~G-g~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 181 PQCPIVVDTMDNNFNKAYGAL------------PERL-YII-QDGKVVYKG-GPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCCEEEEccCCHHHHHhCCC------------cceE-EEE-ECCEEEEeC-CCCCCcCCHHHHHHHHHhc
Confidence 578999996 79999999987 3354 555 389998874 3445677899999998865
No 60
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=89.84 E-value=0.6 Score=33.08 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=21.8
Q ss_pred cHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEE
Q psy1180 23 RDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 62 (140)
Q Consensus 23 ~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~ 62 (140)
..+++.||+. | .++++|||++|+|++..
T Consensus 89 ~~~~~~~~v~--------~----iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 89 ELLEKQFKVE--------G----IPTLVVLKPDGDVVTTN 116 (132)
T ss_pred HHHHHHcCCC--------C----CCEEEEECCCCCEEchh
Confidence 5677778765 4 38999999999998653
No 61
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=88.36 E-value=1.5 Score=33.67 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=34.7
Q ss_pred EEEcCccHHHH-HcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 17 IIGDENRDLAV-KLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 17 LlsD~~~~va~-~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
++-|.++ +++ ++++-.+. -++.+.|++|+|.++.-...+ ...+++++..|..
T Consensus 129 ~vlD~~g-vak~AWqL~e~~-----------SaivVlDk~G~VkfvkeGaLt-~aevQ~Vi~ll~~ 181 (184)
T COG3054 129 FVLDSNG-VAKNAWQLKEES-----------SAVVVLDKDGRVKFVKEGALT-QAEVQQVIDLLQK 181 (184)
T ss_pred eEEccch-hhhhhhcccccc-----------ceEEEEcCCCcEEEEecCCcc-HHHHHHHHHHHHH
Confidence 6678777 666 88875332 589999999999998754432 2245555555543
No 62
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=1.3 Score=33.73 Aligned_cols=51 Identities=12% Similarity=0.241 Sum_probs=39.3
Q ss_pred ceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccC
Q psy1180 14 PFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPA 66 (140)
Q Consensus 14 ~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~ 66 (140)
+.-+|+|.++++.++.||.........|+- ..|-..|| .||+|.+.++.+.
T Consensus 99 ~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~R-S~RYsmvV-~nGvV~~~~iE~p 149 (165)
T COG0678 99 NIKFIPDGNGEFTKAMGMLVDKSDLGFGVR-SWRYSMVV-ENGVVEKLFIEPP 149 (165)
T ss_pred cEEEecCCCchhhhhcCceeecccCCccee-eeeEEEEE-eCCeEEEEEecCC
Confidence 677899999999999999876543222332 46778899 5899999998764
No 63
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=87.94 E-value=1 Score=36.46 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=30.1
Q ss_pred ceeEEEcC--ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEcc
Q psy1180 14 PFAIIGDE--NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 14 ~FPLlsD~--~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~ 65 (140)
.|=++.+- ...+-+++||..... --+||||++|+|||+-...
T Consensus 193 ~Yf~~~~~~~~~~iRe~Lgi~N~~~----------GYvyLVD~~grIRWagsG~ 236 (252)
T PF05176_consen 193 RYFIVYRGQLSDDIREALGINNSYV----------GYVYLVDPNGRIRWAGSGP 236 (252)
T ss_pred eEEEEeCCcccHHHHHHhCCCCCCc----------CeEEEECCCCeEEeCccCC
Confidence 45444433 567888889886542 3689999999999986554
No 64
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=86.98 E-value=2.5 Score=33.05 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=37.7
Q ss_pred CccHHHHHcCCCcccc--cc--cCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhH
Q psy1180 21 ENRDLAVKLDLLDEEN--KN--NLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQ 83 (140)
Q Consensus 21 ~~~~va~~yGv~~~~~--~~--~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq 83 (140)
...+++++|++..... .+ ...+. -.-.+|+||++|+++....+.. +.+++++.|+.+-
T Consensus 143 ~~~~~~k~~~V~~~~v~~~~~~~y~~~-Hs~~~~lid~~G~~~~~~~~~~----~~~~i~~~l~~l~ 204 (207)
T COG1999 143 QIEEVAKAYGVFYSKVPLDDSQNYTID-HSAGFYLIDADGRFLGTYDYGE----PPEEIAADLKKLL 204 (207)
T ss_pred HHHHHHHHhcceeeecccCCCCCceee-eeeEEEEECCCCeEEEEecCCC----ChHHHHHHHHHHh
Confidence 4578999999984211 11 11111 1245899999999998865442 2688888887763
No 65
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=84.73 E-value=2.3 Score=27.93 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=31.2
Q ss_pred EEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHH
Q psy1180 17 IIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVL 79 (140)
Q Consensus 17 LlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l 79 (140)
+=.|...+++++||+. ++ +++++++ +|+++...... ++.+++...|
T Consensus 50 vd~~~~~~l~~~~~i~--------~~----Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~l 95 (96)
T cd02956 50 VNCDAQPQIAQQFGVQ--------AL----PTVYLFA-AGQPVDGFQGA----QPEEQLRQML 95 (96)
T ss_pred EeccCCHHHHHHcCCC--------CC----CEEEEEe-CCEEeeeecCC----CCHHHHHHHh
Confidence 3366778999999886 43 7888886 89887654432 3455655544
No 66
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=84.32 E-value=3.1 Score=29.92 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=32.8
Q ss_pred EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 19 GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 19 sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
.|.+.++|++||+. |+ ++.++. ++|++.. .... ++.+++.+.|+.|
T Consensus 73 ~d~~~~La~~~~I~--------~i----PTl~lf-k~G~~v~-~~G~----~~~~~l~~~l~~~ 118 (120)
T cd03065 73 SKKDAKVAKKLGLD--------EE----DSIYVF-KDDEVIE-YDGE----FAADTLVEFLLDL 118 (120)
T ss_pred CCCCHHHHHHcCCc--------cc----cEEEEE-ECCEEEE-eeCC----CCHHHHHHHHHHH
Confidence 56788999999986 54 777777 5898754 3332 5677888888755
No 67
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=83.88 E-value=3 Score=33.92 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=33.1
Q ss_pred eeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECC-CCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 15 FAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGP-DRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 15 FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDp-dG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
||.+ +.+..++++||+. + .+++||+|+ .|+|+.+..+. -+.+++.+.+..+
T Consensus 212 fp~~-~~d~~la~~~gV~--------~----vPtl~Lv~~~~~~v~~v~~G~----~s~~eL~~~i~~~ 263 (271)
T TIGR02740 212 FPNA-RPDAGQAQQLKIR--------T----VPAVFLADPDPNQFTPIGFGV----MSADELVDRILLA 263 (271)
T ss_pred CCcc-cCCHHHHHHcCCC--------c----CCeEEEEECCCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 5555 4556788888874 4 489999999 46666554443 2456666666544
No 68
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=83.12 E-value=1.8 Score=30.95 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=28.0
Q ss_pred eEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHh
Q psy1180 47 RAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQL 84 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~ 84 (140)
=++++|++||.+...+-.| -+.++|.+.|+++..
T Consensus 80 f~~vLiGKDG~vK~r~~~p----~~~~~lf~~ID~MPm 113 (118)
T PF13778_consen 80 FTVVLIGKDGGVKLRWPEP----IDPEELFDTIDAMPM 113 (118)
T ss_pred eEEEEEeCCCcEEEecCCC----CCHHHHHHHHhCCcc
Confidence 3789999999999986554 378999999998764
No 69
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=82.48 E-value=4.4 Score=25.36 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=23.7
Q ss_pred eeEEEEECCCCcEEEEEEccCCCCccHH-HHHHHHHhh
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPASTGRSVD-EILRVLDSL 82 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~~~gr~~~-EiLr~l~al 82 (140)
+...|.||++|.|....+-..+....++ +++++++++
T Consensus 12 v~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~ 49 (74)
T TIGR01352 12 VVVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKA 49 (74)
T ss_pred EEEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhC
Confidence 5889999999999988764333222233 445555544
No 70
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=81.64 E-value=2 Score=28.83 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=29.1
Q ss_pred ccHHHHHcCCCcccccccCccceeeeEEEEECC-CCcEEEEEEccCCCCccHHHHHHHH
Q psy1180 22 NRDLAVKLDLLDEENKNNLETAITVRAVYIIGP-DRKLKLSIVYPASTGRSVDEILRVL 79 (140)
Q Consensus 22 ~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDp-dG~Ir~~~~~~~~~gr~~~EiLr~l 79 (140)
..+++++||+. + .++++|+++ +|++...... ..+.+++.+.|
T Consensus 61 ~~~~~~~~~i~--------~----~Pti~~~~~~~g~~~~~~~G----~~~~~~l~~~l 103 (104)
T cd02953 61 ITALLKRFGVF--------G----PPTYLFYGPGGEPEPLRLPG----FLTADEFLEAL 103 (104)
T ss_pred HHHHHHHcCCC--------C----CCEEEEECCCCCCCCccccc----ccCHHHHHHHh
Confidence 35788888865 4 389999999 8987765432 24566666655
No 71
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=81.61 E-value=5.2 Score=29.45 Aligned_cols=53 Identities=9% Similarity=0.194 Sum_probs=36.8
Q ss_pred CceeEE-EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 13 FPFAII-GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 13 l~FPLl-sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
+.|-.+ .|.+.+++.+||+. ++ ++.++. ++|++....... ++-+++++.|+++
T Consensus 70 v~~akVDiD~~~~LA~~fgV~--------si----PTLl~F-kdGk~v~~i~G~----~~k~~l~~~I~~~ 123 (132)
T PRK11509 70 WQVAIADLEQSEAIGDRFGVF--------RF----PATLVF-TGGNYRGVLNGI----HPWAELINLMRGL 123 (132)
T ss_pred eEEEEEECCCCHHHHHHcCCc--------cC----CEEEEE-ECCEEEEEEeCc----CCHHHHHHHHHHH
Confidence 444443 35678899999987 54 676666 689888776543 4667888888754
No 72
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=81.03 E-value=6.7 Score=26.97 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=31.2
Q ss_pred cHHHHHcCCCcccccccCccceeeeEEEEECC-CCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 23 RDLAVKLDLLDEENKNNLETAITVRAVYIIGP-DRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 23 ~~va~~yGv~~~~~~~~~G~~~~~RatFIIDp-dG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
.++++.|++. + .+++++||+ +|++....... .+.++++..|+..
T Consensus 66 ~~~~~~~~~~--------~----~P~~~~i~~~~g~~l~~~~G~----~~~~~f~~~L~~~ 110 (114)
T cd02958 66 QRFLQSYKVD--------K----YPHIAIIDPRTGEVLKVWSGN----ITPEDLLSQLIEF 110 (114)
T ss_pred HHHHHHhCcc--------C----CCeEEEEeCccCcEeEEEcCC----CCHHHHHHHHHHH
Confidence 4677777753 4 389999999 89998876544 3567777777653
No 73
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=80.54 E-value=4.5 Score=27.89 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=33.5
Q ss_pred CCceeEE-EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 12 DFPFAII-GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 12 ~l~FPLl-sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
++.|--+ .|.+..++++||+. + .++++++ ++|++....... ++.+++.+.|+.|
T Consensus 57 ~v~~~~vd~d~~~~l~~~~~V~--------~----~Pt~~i~-~~g~~~~~~~G~----~~~~~l~~~i~~~ 111 (111)
T cd02963 57 GVGIATVNAGHERRLARKLGAH--------S----VPAIVGI-INGQVTFYHDSS----FTKQHVVDFVRKL 111 (111)
T ss_pred CceEEEEeccccHHHHHHcCCc--------c----CCEEEEE-ECCEEEEEecCC----CCHHHHHHHHhcC
Confidence 3443333 35667889999875 4 3788888 488776554332 4566776766643
No 74
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=79.07 E-value=11 Score=27.10 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=26.2
Q ss_pred eEEEEECCCCcEEEEEEccC----CCCccHHHHHHHHHh
Q psy1180 47 RAVYIIGPDRKLKLSIVYPA----STGRSVDEILRVLDS 81 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~----~~gr~~~EiLr~l~a 81 (140)
++++++|++|++.+...+-. ..+..+.++|+.|+.
T Consensus 82 Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 82 PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 89999999999998876532 233467788877764
No 75
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=78.25 E-value=3.2 Score=26.39 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=24.4
Q ss_pred eeEEEEECCCCcEEEEEEccCCCCc-cHHHHHHHHHh
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPASTGR-SVDEILRVLDS 81 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~~~gr-~~~EiLr~l~a 81 (140)
+...|.||++|.|..+.+-..+... =-++++++++.
T Consensus 18 v~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~ 54 (79)
T PF03544_consen 18 VVVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKK 54 (79)
T ss_dssp EEEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC
T ss_pred EEEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHh
Confidence 5889999999999988765433333 23455555544
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=75.80 E-value=9.9 Score=25.11 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=28.1
Q ss_pred EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 19 GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 19 sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
+|.+..++++|++. ++ ++++++ ++|++ ..+.. .++.+++.+.|+
T Consensus 57 ~~~~~~~~~~~~i~--------~~----Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~ 100 (101)
T cd02994 57 VTQEPGLSGRFFVT--------AL----PTIYHA-KDGVF-RRYQG----PRDKEDLISFIE 100 (101)
T ss_pred ccCCHhHHHHcCCc--------cc----CEEEEe-CCCCE-EEecC----CCCHHHHHHHHh
Confidence 45667888888875 43 677776 78985 33222 356677766654
No 77
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=74.76 E-value=13 Score=25.07 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=34.2
Q ss_pred CceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 13 FPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 13 l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
+.|-.+.-.+.+++++|++. ++ + ||++-++|++.....+ .+.++++.+|+.|
T Consensus 51 ~~~~~vd~d~~~~~~~~~v~--------~~----P-t~~~~~~g~~~~~~~G-----~~~~~~~~~i~~~ 102 (102)
T cd02948 51 LHFATAEADTIDTLKRYRGK--------CE----P-TFLFYKNGELVAVIRG-----ANAPLLNKTITEL 102 (102)
T ss_pred EEEEEEeCCCHHHHHHcCCC--------cC----c-EEEEEECCEEEEEEec-----CChHHHHHHHhhC
Confidence 45554433367888999876 33 5 4555579988877654 3667888877754
No 78
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=74.53 E-value=9 Score=24.85 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=29.8
Q ss_pred EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 19 GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 19 sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
+|.+..+++.||+. + .+++|++++++. ...+.. .++.+++...|+.
T Consensus 55 ~~~~~~~~~~~~i~--------~----~P~~~~~~~~~~-~~~~~g----~~~~~~l~~~i~~ 100 (102)
T TIGR01126 55 ATAEKDLASRFGVS--------G----FPTIKFFPKGKK-PVDYEG----GRDLEAIVEFVNE 100 (102)
T ss_pred ccchHHHHHhCCCC--------c----CCEEEEecCCCc-ceeecC----CCCHHHHHHHHHh
Confidence 45567888888875 4 378999998886 222222 2456666666653
No 79
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=74.33 E-value=5.3 Score=25.46 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCCceeEE-EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHH
Q psy1180 11 GDFPFAII-GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRV 78 (140)
Q Consensus 11 ~~l~FPLl-sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~ 78 (140)
..+.|-.+ .|.+.++++.||+. + .+++++++++|.....+. -.++.+++++.
T Consensus 48 ~~~~~~~v~~~~~~~~~~~~~i~--------~----~Pt~~~~~~~~~~~~~~~----g~~~~~~i~~~ 100 (101)
T cd02961 48 GKVVVAKVDCTANNDLCSEYGVR--------G----YPTIKLFPNGSKEPVKYE----GPRTLESLVEF 100 (101)
T ss_pred CceEEEEeeccchHHHHHhCCCC--------C----CCEEEEEcCCCcccccCC----CCcCHHHHHhh
Confidence 34555555 35568999999884 3 389999998873333222 22466776654
No 80
>PRK09381 trxA thioredoxin; Provisional
Probab=72.97 E-value=18 Score=24.22 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=30.5
Q ss_pred EEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 17 IIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 17 LlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
+-.|....+++.|++. + .++++++ ++|+++...... .+.+++...|++
T Consensus 59 vd~~~~~~~~~~~~v~--------~----~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~ 106 (109)
T PRK09381 59 LNIDQNPGTAPKYGIR--------G----IPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA 106 (109)
T ss_pred EECCCChhHHHhCCCC--------c----CCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHH
Confidence 3345567777888765 3 3677777 689998876543 245566555543
No 81
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=72.48 E-value=7.8 Score=29.74 Aligned_cols=33 Identities=6% Similarity=0.159 Sum_probs=21.7
Q ss_pred EEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 48 AVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 48 atFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
.-||||++|+++..+- ..+.+.-.+|.+.|+++
T Consensus 148 ~KFLv~~~G~vv~r~~--~~~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 148 EKFLVGRDGQVIQRFS--PDMTPEDPIVMESIKLA 180 (183)
T ss_pred EEEEECCCCcEEEEEC--CCCCCCHHHHHHHHHHH
Confidence 4799999999999853 33434333455666543
No 82
>PRK10819 transport protein TonB; Provisional
Probab=71.61 E-value=11 Score=30.51 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=25.6
Q ss_pred eeEEEEECCCCcEEEEEEccCCCCc-cHH-HHHHHHHhhH
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPASTGR-SVD-EILRVLDSLQ 83 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~~~gr-~~~-EiLr~l~alq 83 (140)
++..|.||++|+|..+.+-..+ +. .++ +++++++.+.
T Consensus 183 V~V~f~I~~~G~V~~v~V~~Ss-g~~~fD~aal~Avr~wr 221 (246)
T PRK10819 183 VKVKFDVDEDGRVDNVRILSAE-PRNMFEREVKQAMRKWR 221 (246)
T ss_pred EEEEEEECCCCCEEEEEEeccC-ChHHHHHHHHHHHHhcC
Confidence 5889999999999988874433 33 244 5566666553
No 83
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=70.38 E-value=6.4 Score=35.33 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=32.1
Q ss_pred cHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhH
Q psy1180 23 RDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQ 83 (140)
Q Consensus 23 ~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq 83 (140)
.+++++||+. |+ ++++++|++|+++...... -..+.+++++.|+.++
T Consensus 524 ~~l~~~~~v~--------g~----Pt~~~~~~~G~~i~~~r~~--G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 524 VALLKHYNVL--------GL----PTILFFDAQGQEIPDARVT--GFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHHcCCC--------CC----CEEEEECCCCCCccccccc--CCCCHHHHHHHHHHhc
Confidence 5778888875 53 8999999999985322111 1246788888887654
No 84
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=69.64 E-value=19 Score=23.12 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=31.9
Q ss_pred CceeEE-EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 13 FPFAII-GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 13 l~FPLl-sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
+.|-.+ .|.+.+++++||+. + .++++++ ++|++....... ++.+++.+.|++
T Consensus 47 ~~~~~vd~~~~~~~~~~~~v~--------~----~P~~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~ 99 (101)
T TIGR01068 47 VKFVKLNVDENPDIAAKYGIR--------S----IPTLLLF-KNGKEVDRSVGA----LPKAALKQLINK 99 (101)
T ss_pred eEEEEEECCCCHHHHHHcCCC--------c----CCEEEEE-eCCcEeeeecCC----CCHHHHHHHHHh
Confidence 444433 35667888888875 3 3788888 578776544322 345666666653
No 85
>PRK10996 thioredoxin 2; Provisional
Probab=68.31 E-value=18 Score=25.97 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=30.5
Q ss_pred EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 19 GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 19 sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
.|.+.+++++||+. |+ +++++. ++|++....... .+.+++..+|+.
T Consensus 92 ~~~~~~l~~~~~V~--------~~----Ptlii~-~~G~~v~~~~G~----~~~e~l~~~l~~ 137 (139)
T PRK10996 92 TEAERELSARFRIR--------SI----PTIMIF-KNGQVVDMLNGA----VPKAPFDSWLNE 137 (139)
T ss_pred CCCCHHHHHhcCCC--------cc----CEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHH
Confidence 45568999999986 54 566665 589987765443 345666666654
No 86
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=66.93 E-value=5.3 Score=30.04 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=26.5
Q ss_pred CccHHHHHcCCCccccc----ccCccceeeeEEEEECCCCcEEEEEE
Q psy1180 21 ENRDLAVKLDLLDEENK----NNLETAITVRAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 21 ~~~~va~~yGv~~~~~~----~~~G~~~~~RatFIIDpdG~Ir~~~~ 63 (140)
.-.+++++|++...... ...+.-.-.-.+|||||+|+|+.++.
T Consensus 126 ~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 126 EIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 34678999998754221 11111112357999999999999864
No 87
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=66.10 E-value=10 Score=25.19 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=27.2
Q ss_pred ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHH
Q psy1180 22 NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVL 79 (140)
Q Consensus 22 ~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l 79 (140)
+.+++++||+. + .++++++++.+.+.........-.++.+++.+.|
T Consensus 63 ~~~~~~~~~i~--------~----~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 63 NKPLCGKYGVQ--------G----FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred cHHHHHHcCCC--------c----CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 56788888875 4 3899999887732111011112245777776654
No 88
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=65.92 E-value=35 Score=26.03 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=36.4
Q ss_pred eeEEEcCc--cHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCC---Cc-cHHHHHHHHHhhHh
Q psy1180 15 FAIIGDEN--RDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPAST---GR-SVDEILRVLDSLQL 84 (140)
Q Consensus 15 FPLlsD~~--~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~---gr-~~~EiLr~l~alq~ 84 (140)
.|+..|.+ ..|.+.|.-+.....+..|+ +.+.+++|||+..+...|.... |+ .+-++|+.|..+-.
T Consensus 74 I~VkvDree~Pdid~~y~~~~~~~~~~gGw----Pl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~ 145 (163)
T PF03190_consen 74 IPVKVDREERPDIDKIYMNAVQAMSGSGGW----PLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWK 145 (163)
T ss_dssp EEEEEETTT-HHHHHHHHHHHHHHHS---S----SEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHH
T ss_pred EEEEeccccCccHHHHHHHHHHHhcCCCCC----CceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHH
Confidence 46677754 46776662211110111266 7899999999999988776543 22 57788877765543
No 89
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=65.25 E-value=15 Score=23.89 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=22.0
Q ss_pred cCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEcc
Q psy1180 20 DENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 20 D~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~ 65 (140)
|.+..+++.|++. ++ ++++++ ++|+....+...
T Consensus 60 ~~~~~~~~~~~v~--------~~----Pt~~~~-~~g~~~~~~~G~ 92 (102)
T cd03005 60 TQHRELCSEFQVR--------GY----PTLLLF-KDGEKVDKYKGT 92 (102)
T ss_pred CCChhhHhhcCCC--------cC----CEEEEE-eCCCeeeEeeCC
Confidence 4556888888864 33 677778 678766555443
No 90
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=64.89 E-value=23 Score=28.06 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=27.1
Q ss_pred eeeEEEEECCCCcEEEEEEccCCCCccHH-HHHHHHHhhHh
Q psy1180 45 TVRAVYIIGPDRKLKLSIVYPASTGRSVD-EILRVLDSLQL 84 (140)
Q Consensus 45 ~~RatFIIDpdG~Ir~~~~~~~~~gr~~~-EiLr~l~alq~ 84 (140)
.++..|.||++|.|.-+.+-..+-.+-+| ++|++++.+..
T Consensus 181 ~V~V~f~i~~~G~v~~v~v~~SSg~~~lD~aal~air~~~~ 221 (244)
T COG0810 181 TVKVKFTIDPDGNVTNVRVLKSSGSPALDRAALEAIRKWRF 221 (244)
T ss_pred eEEEEEEECCCCCEeeeEEeecCCcHHHHHHHHHHHHHhcc
Confidence 36899999999999888776544444333 44566655543
No 91
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=64.39 E-value=16 Score=22.24 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=22.9
Q ss_pred EEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 49 VYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 49 tFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
.|.|+|||+|...... -.|.+-.++.+.|++
T Consensus 2 ~~~I~~dG~V~~~v~G--~~G~~C~~~t~~lE~ 32 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEG--FKGSSCLEATAALEE 32 (48)
T ss_pred EEEECCCcEEEEEEEe--ccChhHHHHHHHHHH
Confidence 4889999999887543 356677777777754
No 92
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=63.76 E-value=32 Score=23.13 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=26.6
Q ss_pred cHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 23 RDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 23 ~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
.+++++|++. |+ ++ |++-++|++...+.. .+.+++.+.+.
T Consensus 61 ~~l~~~~~V~--------~~----Pt-~~~~~~G~~v~~~~G-----~~~~~l~~~~~ 100 (103)
T cd02985 61 MELCRREKII--------EV----PH-FLFYKDGEKIHEEEG-----IGPDELIGDVL 100 (103)
T ss_pred HHHHHHcCCC--------cC----CE-EEEEeCCeEEEEEeC-----CCHHHHHHHHH
Confidence 3789999876 54 55 555589999876654 34566666553
No 93
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=61.76 E-value=22 Score=23.44 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=22.3
Q ss_pred cCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEc
Q psy1180 20 DENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 20 D~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~ 64 (140)
|.+.+++++||+. + .++++|++ +|++......
T Consensus 54 d~~~~l~~~~~v~--------~----vPt~~i~~-~g~~v~~~~g 85 (97)
T cd02949 54 DEDQEIAEAAGIM--------G----TPTVQFFK-DKELVKEISG 85 (97)
T ss_pred CCCHHHHHHCCCe--------e----ccEEEEEE-CCeEEEEEeC
Confidence 3456788888874 3 37888995 7888766544
No 94
>PLN00115 pollen allergen group 3; Provisional
Probab=60.66 E-value=5 Score=29.09 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=10.2
Q ss_pred eeecCCCCCCCc
Q psy1180 91 VVTPANWKPGDK 102 (140)
Q Consensus 91 ~~~PanW~~G~~ 102 (140)
.++|+||++|.-
T Consensus 100 nViPa~Wk~G~t 111 (118)
T PLN00115 100 DVIPESFKAGSV 111 (118)
T ss_pred ceECCCCCCCCE
Confidence 578999999974
No 95
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=60.38 E-value=25 Score=22.65 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=18.4
Q ss_pred eeeEEEEECCCCcEEEEEEccCCCCccHHHH
Q psy1180 45 TVRAVYIIGPDRKLKLSIVYPASTGRSVDEI 75 (140)
Q Consensus 45 ~~RatFIIDpdG~Ir~~~~~~~~~gr~~~Ei 75 (140)
.+...|-||++|+|..+.+...+-...+++.
T Consensus 27 ~~~V~i~i~~dG~v~~~~i~~sSG~~~~D~a 57 (85)
T PF13103_consen 27 SVTVRITIDPDGRVISVRIVKSSGNPAFDAA 57 (85)
T ss_dssp -EEEEEEE-TTSBEEEEEEEE--S-HHHHHH
T ss_pred EEEEEEEECCCCCEEEEEEecCCCCHHHHHH
Confidence 4688999999999976655544444445443
No 96
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=58.36 E-value=22 Score=24.56 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=30.5
Q ss_pred CCceeEE-EcCccHHHHHcCCCcccccccCccceeeeEEEEECCC---CcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 12 DFPFAII-GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPD---RKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 12 ~l~FPLl-sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpd---G~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
++.|-.+ .|.+.+++++||+. + +++++|.+.. |.+++. . ...+ .|+...|+++
T Consensus 53 ~i~~~~vd~d~~~~l~~~~~v~--------~----vPt~~i~~~g~~~~~~~~~--G-~~~~---~el~~~i~~i 109 (113)
T cd02975 53 KLKLEIYDFDEDKEKAEKYGVE--------R----VPTTIFLQDGGKDGGIRYY--G-LPAG---YEFASLIEDI 109 (113)
T ss_pred ceEEEEEeCCcCHHHHHHcCCC--------c----CCEEEEEeCCeecceEEEE--e-cCch---HHHHHHHHHH
Confidence 3455544 56678899999876 3 3788887653 444432 2 2223 4555555554
No 97
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=57.29 E-value=30 Score=27.57 Aligned_cols=79 Identities=13% Similarity=0.210 Sum_probs=50.4
Q ss_pred CCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCC
Q psy1180 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNT 90 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~ 90 (140)
.+-.||.+|..+..+...|++-..+..+ .+.=++|+-|. |+|.+.+. +.+|..+.+.-...-|-.+-.-.+
T Consensus 127 mGW~~pw~Ss~gs~Fn~D~~~~~~~~~~-----~~g~svF~Rdg-~~VfhTys---t~~RG~e~l~~~~~lLDlTP~GR~ 197 (211)
T PF05988_consen 127 MGWTFPWYSSYGSDFNYDFGVSFDEGGE-----MPGLSVFLRDG-GRVFHTYS---TYGRGGERLMPTWNLLDLTPLGRQ 197 (211)
T ss_pred cCCCceEEEcCCCcccccccceeccCCC-----ceeEEEEEEcC-CEEEEEee---cCCCCchhhhhHHHHHhcCCCCCC
Confidence 4567999999988888889885443211 13348899987 99988864 356766666555544444433222
Q ss_pred eeecCCCC
Q psy1180 91 VVTPANWK 98 (140)
Q Consensus 91 ~~~PanW~ 98 (140)
+.-|.+|-
T Consensus 198 E~~~~~W~ 205 (211)
T PF05988_consen 198 EDPPMDWW 205 (211)
T ss_pred CCCCCCcc
Confidence 34566664
No 98
>KOG1651|consensus
Probab=57.00 E-value=15 Score=28.34 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=14.0
Q ss_pred EEEEECCCCcEEEEEE
Q psy1180 48 AVYIIGPDRKLKLSIV 63 (140)
Q Consensus 48 atFIIDpdG~Ir~~~~ 63 (140)
+=|+||++|.++.++.
T Consensus 138 ~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 138 TKFLVDKDGHVVKRFS 153 (171)
T ss_pred EEEeECCCCcEEEeeC
Confidence 5699999999999874
No 99
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=56.75 E-value=25 Score=23.61 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=33.2
Q ss_pred CCcee-EEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHH
Q psy1180 12 DFPFA-IIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRV 78 (140)
Q Consensus 12 ~l~FP-LlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~ 78 (140)
.+.|- +-+|.+.+++++||+. ++ +++++. ++|.+.... + .-.|+.+++...
T Consensus 56 ~~~~~~vd~d~~~~l~~~~~v~--------~~----Ptl~~~-~~g~~~~~~-~--~g~~~~~~l~~f 107 (108)
T cd02996 56 KVVWGKVDCDKESDIADRYRIN--------KY----PTLKLF-RNGMMMKRE-Y--RGQRSVEALAEF 107 (108)
T ss_pred cEEEEEEECCCCHHHHHhCCCC--------cC----CEEEEE-eCCcCccee-c--CCCCCHHHHHhh
Confidence 36664 4478889999999986 43 677777 678854322 2 124677776654
No 100
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=56.30 E-value=19 Score=23.79 Aligned_cols=44 Identities=11% Similarity=0.029 Sum_probs=27.4
Q ss_pred EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCcc-HHHHHHH
Q psy1180 19 GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRS-VDEILRV 78 (140)
Q Consensus 19 sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~-~~EiLr~ 78 (140)
+|...++++.||+. ++ ++++++...|.....+... ++ .+++.+.
T Consensus 59 ~~~~~~~~~~~~i~--------~~----Pt~~~~~~g~~~~~~~~G~----~~~~~~l~~~ 103 (104)
T cd03004 59 CQKYESLCQQANIR--------AY----PTIRLYPGNASKYHSYNGW----HRDADSILEF 103 (104)
T ss_pred CCchHHHHHHcCCC--------cc----cEEEEEcCCCCCceEccCC----CCCHHHHHhh
Confidence 45667888888875 43 7888887665665554332 23 5665543
No 101
>smart00594 UAS UAS domain.
Probab=55.65 E-value=32 Score=24.10 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=28.3
Q ss_pred CccHHHHHcCCCcccccccCccceeeeEEEEECCCC-cEEEEEEccCCCCccHHHHHHHH
Q psy1180 21 ENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDR-KLKLSIVYPASTGRSVDEILRVL 79 (140)
Q Consensus 21 ~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG-~Ir~~~~~~~~~gr~~~EiLr~l 79 (140)
...+++++|++. |+ +.+.|+|+.| .-++..+....-..+.++++..|
T Consensus 74 eg~~l~~~~~~~--------~~----P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 74 EGQRVSQFYKLD--------SF----PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred hHHHHHHhcCcC--------CC----CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 346788888764 43 8999999997 22223333333333567777654
No 102
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=55.05 E-value=20 Score=27.36 Aligned_cols=59 Identities=10% Similarity=0.277 Sum_probs=32.8
Q ss_pred CccccccCccCCCceeEEEcCc--cH-HHHHcCCCccccc-----ccCccceeeeEEEEECCCCcEEEEEE
Q psy1180 1 DIKNYCLDIKGDFPFAIIGDEN--RD-LAVKLDLLDEENK-----NNLETAITVRAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 1 di~~~~~~~~~~l~FPLlsD~~--~~-va~~yGv~~~~~~-----~~~G~~~~~RatFIIDpdG~Ir~~~~ 63 (140)
+|.+||. .-+++.|||++=.+ ++ ..=.|--+..... ..-.+. =+=|+||++|.|..++.
T Consensus 78 EI~~fC~-~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWN---FtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 78 EIAKFCQ-LNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWN---FTKFLVDRDGNVVKRFS 144 (162)
T ss_pred HHHHHHH-hccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCcccee---eEEEEEcCCCcEEEeeC
Confidence 3677884 35899999998542 21 1111111111100 001233 36799999999999863
No 103
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=54.36 E-value=55 Score=20.93 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=33.4
Q ss_pred CCceeEEE-cCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 12 DFPFAIIG-DENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 12 ~l~FPLls-D~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
++.|=-+. |.+..++++|++. ++ ++++++. +|+.......+ ++.++|.+.|+.
T Consensus 49 ~v~~~~vd~~~~~~l~~~~~v~--------~~----Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~ 102 (103)
T PF00085_consen 49 NVKFAKVDCDENKELCKKYGVK--------SV----PTIIFFK-NGKEVKRYNGP----RNAESLIEFIEK 102 (103)
T ss_dssp TSEEEEEETTTSHHHHHHTTCS--------SS----SEEEEEE-TTEEEEEEESS----SSHHHHHHHHHH
T ss_pred ccccchhhhhccchhhhccCCC--------CC----CEEEEEE-CCcEEEEEECC----CCHHHHHHHHHc
Confidence 34444433 3456899999986 43 6777774 56666644433 577888877763
No 104
>KOG0541|consensus
Probab=54.24 E-value=17 Score=27.90 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=35.9
Q ss_pred ceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCC
Q psy1180 14 PFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG 69 (140)
Q Consensus 14 ~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~g 69 (140)
.--+++|++++..+++|+.......--|.- ..|-..+++ ||+|....+.+...+
T Consensus 105 ~V~f~aD~~g~ftk~lgleld~~d~~~g~R-S~R~a~vve-ngkV~~~nvE~~g~~ 158 (171)
T KOG0541|consen 105 HVKFVADPAGEFTKSLGLELDLSDKLLGVR-SRRYALVVE-NGKVTVVNVEEGGTD 158 (171)
T ss_pred eEEEEecCCCceeeeccceeeeccccCccc-cccEEEEEe-CCeEEEEEeccCCCc
Confidence 456799999999999998644211000221 346677775 799999887765543
No 105
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=53.46 E-value=25 Score=29.31 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=29.9
Q ss_pred eEEEEECCCCcEEEEEEccCCCCcc---HHHHHHHHH-hhHhhhhCC
Q psy1180 47 RAVYIIGPDRKLKLSIVYPASTGRS---VDEILRVLD-SLQLFYKNN 89 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~~~gr~---~~EiLr~l~-alq~~~~~~ 89 (140)
=.+|+||++|+++|...+...++.+ .+++++.+. -.+...++.
T Consensus 105 d~vf~vd~~G~~vy~~~~d~~t~~~~~~~~~L~~~i~~~g~l~~R~~ 151 (295)
T COG3322 105 DGVFVVDPSGKLVYSKLVDQETATELPLPESLLEDIRRIGALLTRER 151 (295)
T ss_pred cEEEEECCCCCEEEEeeeccccccccCCcHHHHHHHhhcchhhhhcc
Confidence 6899999999999999887666654 356666665 333333343
No 106
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=50.09 E-value=42 Score=26.39 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=36.2
Q ss_pred eeEEEEECCCCcEEEEEEccCCCCccH---HHHHHHHHhhHhhhhCCCeeecCCCCCCCceeeCC
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPASTGRSV---DEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHP 107 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~~~gr~~---~EiLr~l~alq~~~~~~~~~~PanW~~G~~~~~~p 107 (140)
...+|-.++++.+.....+. ...... .+..++++.|...-..+....--.|++||-+++.-
T Consensus 171 ~~Pii~~~~~~~~~r~~~~~-~~~~p~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~Gdivi~DN 234 (262)
T cd00250 171 LAPVLELDPEDPVLRYNNYD-NFSVPFDEVKEAYEALAELVALIEDPDNQLTVKLEPGDLLIFDN 234 (262)
T ss_pred ccCEEEeCCCccEEEEeCCC-CCCCCHHHHHHHHHHHHHHHHHHcChhhEEEEEcCCCCEEEEec
Confidence 35677888877665543331 111122 35566666665443333245678899999999853
No 107
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=47.69 E-value=49 Score=23.67 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=24.4
Q ss_pred eeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
..++||+|.+|.++..-+|..........+.+.+-.
T Consensus 2 I~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~ 37 (141)
T PF01217_consen 2 IKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIK 37 (141)
T ss_dssp EEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHH
Confidence 478999999999999988843333334455554433
No 108
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=47.66 E-value=48 Score=23.60 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=14.8
Q ss_pred eEEEEECCCCcEEEEEEc
Q psy1180 47 RAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~ 64 (140)
=.+||+|++|++++....
T Consensus 51 d~~~~~d~~g~~~~~~~~ 68 (161)
T PF05228_consen 51 DLIFILDPDGRVLYSSSK 68 (161)
T ss_pred cEEEEEcCCCCEEEEecc
Confidence 589999999999984443
No 109
>PF01802 Herpes_V23: Herpesvirus VP23 like capsid protein; InterPro: IPR002690 This family consist of various capsid proteins from members of the Herpesviridae. The capsid protein VP23 in Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1) forms a triplex together with VP19C these fit between and link together adjacent capsomers as formed by VP5 and VP26 []. VP3 along with the scaffolding proteins helps to form normal capsids by defining the curvature of the shell and size of the particle [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=47.54 E-value=19 Score=30.07 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=15.9
Q ss_pred ecCCCCCCCceeeCCCCCC
Q psy1180 93 TPANWKPGDKVMIHPAVKD 111 (140)
Q Consensus 93 ~PanW~~G~~~~~~p~~~~ 111 (140)
-|..|..||.+.+-|++-.
T Consensus 95 gPf~w~ngd~l~liPPvf~ 113 (296)
T PF01802_consen 95 GPFDWCNGDQLCLIPPVFG 113 (296)
T ss_pred CCeeccCCCEEEEeCCCCC
Confidence 4999999999988888743
No 110
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=47.52 E-value=50 Score=21.23 Aligned_cols=32 Identities=6% Similarity=0.133 Sum_probs=21.8
Q ss_pred cCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEc
Q psy1180 20 DENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 20 D~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~ 64 (140)
+...++++.||+. ++ ++++++ .+|++......
T Consensus 55 ~~~~~~~~~~~i~--------~~----Pt~~~~-~~g~~~~~~~g 86 (97)
T cd02984 55 EELPEISEKFEIT--------AV----PTFVFF-RNGTIVDRVSG 86 (97)
T ss_pred ccCHHHHHhcCCc--------cc----cEEEEE-ECCEEEEEEeC
Confidence 3456788888875 43 677777 47988766543
No 111
>PHA03257 Capsid triplex subunit 2; Provisional
Probab=47.22 E-value=21 Score=30.12 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=14.7
Q ss_pred cCCCCCCCceeeCCCC
Q psy1180 94 PANWKPGDKVMIHPAV 109 (140)
Q Consensus 94 PanW~~G~~~~~~p~~ 109 (140)
|..|..||.+.+-|++
T Consensus 104 PF~w~nGD~LcllPPv 119 (316)
T PHA03257 104 PFDLCNGDAVCLLPPI 119 (316)
T ss_pred CeeecCCCEEEEeCCc
Confidence 9999999999888887
No 112
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=47.19 E-value=65 Score=26.98 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=35.5
Q ss_pred eeEEEEECCCCcEEEEEEccC----CCCccHHHHH---HHHHhhHhhhhCCCeeecCCCCCCCceeeC
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPA----STGRSVDEIL---RVLDSLQLFYKNNTVVTPANWKPGDKVMIH 106 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~----~~gr~~~EiL---r~l~alq~~~~~~~~~~PanW~~G~~~~~~ 106 (140)
.+-+|-++++|.+..+.+.+. ..+-..+|+- ++++.|...-..+....--.|+|||-+|..
T Consensus 260 ~~Pvi~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~p~~~~~~~l~pGd~vi~D 327 (366)
T TIGR02409 260 RHPVIELDDDGEVVKIRFNNASRDWFFDVPPSRVQDFYAAYRRFTELIEQPRFKFTFKLEPGDLVLFD 327 (366)
T ss_pred ccCEEEECCCCCEEEEEeCCcccCccCCCCHHHHHHHHHHHHHHHHHHcCcccEEEEEcCCCcEEEEe
Confidence 356788899998766554331 1233444443 445444433323313346689999999874
No 113
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=45.87 E-value=62 Score=20.04 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=24.2
Q ss_pred cCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 20 DENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 20 D~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
|.+.+++++||+. ++ ++++ + +|++++. . .++.+++.+.|++
T Consensus 40 ~~~~~~~~~~~v~--------~v----Pt~~-~--~g~~~~~--G----~~~~~~l~~~l~~ 80 (82)
T TIGR00411 40 MENPQKAMEYGIM--------AV----PAIV-I--NGDVEFI--G----APTKEELVEAIKK 80 (82)
T ss_pred ccCHHHHHHcCCc--------cC----CEEE-E--CCEEEEe--c----CCCHHHHHHHHHh
Confidence 3567788888765 33 6655 4 6765322 1 1356777777664
No 114
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=45.44 E-value=20 Score=23.05 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=13.9
Q ss_pred eEEEEECCCCcEEEEE
Q psy1180 47 RAVYIIGPDRKLKLSI 62 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~ 62 (140)
=++|++|.+|+|.++-
T Consensus 12 ~~i~~~d~~g~I~~~N 27 (113)
T PF00989_consen 12 DGIFVIDEDGRILYVN 27 (113)
T ss_dssp SEEEEEETTSBEEEEC
T ss_pred ceEEEEeCcCeEEEEC
Confidence 4789999999999874
No 115
>PF09048 Cro: Cro; InterPro: IPR000655 Bacteriophage lambda encodes two repressors: the Cro repressor that acts to turn off early gene transcription during the lytic cycle, and the lambda or cI repressor that is required to maintain lysogenic growth. Together the Cro and cI repressors form a helix-turn-helix (HTH) superfamily. The lambda Cro repressor binds to DNA as a highly flexible dimer. The crystal structure of the lambda Cro repressor [] reveals a HTH DNA-binding protein with an alpha/beta fold that differs from other Cro family members, possibly by an evolutionary fold change []. Most Cro proteins, such as Enterobacteria phage P22 Cro and Bacteriophage 434 Cro, have an all-alpha structure that is thought to be ancestral to lambda Cro, where the fourth and fifth helices are replaced by a beta-sheet, possibly as a result of secondary structure switching rather than by nonhomologous replacement []. This entry represents the lambda-type Cro repressor with an alpha/beta topology.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 5CRO_A 2ECS_A 2OVG_A 6CRO_A 1D1L_A 2ORC_A 1D1M_B 3ORC_A 1ORC_A 2A63_A ....
Probab=45.29 E-value=21 Score=22.89 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=27.2
Q ss_pred cHHHHHcCCCcccccccCccceeeeEEEEE-CCCCcEEEEEEccCC
Q psy1180 23 RDLAVKLDLLDEENKNNLETAITVRAVYII-GPDRKLKLSIVYPAS 67 (140)
Q Consensus 23 ~~va~~yGv~~~~~~~~~G~~~~~RatFII-DpdG~Ir~~~~~~~~ 67 (140)
.+.|+.+|+....-.. -+ ..-|-.||. .+||.+...++.|.+
T Consensus 16 ~kaA~~lGV~Q~AIsK--Al-r~gR~I~v~~~~dGs~~A~EirpFP 58 (59)
T PF09048_consen 16 AKAARALGVTQSAISK--AL-RAGRNIFVTIMPDGSVEAEEIRPFP 58 (59)
T ss_dssp HHHHHHHTS-HHHHHH--HH-HCT-EEEEEEETTSEEEEEEEEESS
T ss_pred HHHHHHcCCcHHHHHH--HH-HcCCcEEEEEcCCCeEEEEEecCCC
Confidence 4788899988653210 11 134888886 899999999887753
No 116
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=45.27 E-value=31 Score=20.03 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=20.0
Q ss_pred eeEEEEECCCCcEEEEEEccCCCCccHHHHHHHH
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVL 79 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l 79 (140)
.+..+|+|.+|++..+.. ..++++++
T Consensus 30 ~~~~~V~d~~~~~~G~is--------~~dl~~~l 55 (57)
T PF00571_consen 30 ISRLPVVDEDGKLVGIIS--------RSDLLKAL 55 (57)
T ss_dssp SSEEEEESTTSBEEEEEE--------HHHHHHHH
T ss_pred CcEEEEEecCCEEEEEEE--------HHHHHhhh
Confidence 389999999999988863 45666654
No 117
>PHA03258 Capsid triplex subunit 2; Provisional
Probab=45.03 E-value=24 Score=29.60 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=14.0
Q ss_pred cCCCCCCCceeeCCCC
Q psy1180 94 PANWKPGDKVMIHPAV 109 (140)
Q Consensus 94 PanW~~G~~~~~~p~~ 109 (140)
|..|..||.+.+-|++
T Consensus 102 ~F~w~nGD~L~liPPv 117 (304)
T PHA03258 102 FFQWDSHTQLSVIPPV 117 (304)
T ss_pred ceeccCCCEEEEeCCc
Confidence 4999999998888887
No 118
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=44.99 E-value=69 Score=20.68 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=26.8
Q ss_pred EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHH
Q psy1180 19 GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRV 78 (140)
Q Consensus 19 sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~ 78 (140)
.|.+.+++++||+. + .+++++++.. ...... ..-+++.+++.+.
T Consensus 58 ~~~~~~~~~~~~i~--------~----~P~~~~~~~~-~~~~~~---~~g~~~~~~l~~~ 101 (103)
T cd03001 58 ADVHQSLAQQYGVR--------G----FPTIKVFGAG-KNSPQD---YQGGRTAKAIVSA 101 (103)
T ss_pred CcchHHHHHHCCCC--------c----cCEEEEECCC-Ccceee---cCCCCCHHHHHHH
Confidence 35567888988875 4 3788888754 333222 2234677776654
No 119
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=44.80 E-value=20 Score=22.84 Aligned_cols=15 Identities=20% Similarity=0.651 Sum_probs=12.5
Q ss_pred EEEEECCCCcEEEEE
Q psy1180 48 AVYIIGPDRKLKLSI 62 (140)
Q Consensus 48 atFIIDpdG~Ir~~~ 62 (140)
+++++|++|+|++.-
T Consensus 7 ~i~v~D~~~~i~~~N 21 (110)
T PF08448_consen 7 GIFVIDPDGRIVYAN 21 (110)
T ss_dssp EEEEEETTSBEEEE-
T ss_pred eeEEECCCCEEEEEH
Confidence 678999999998864
No 120
>PF11199 DUF2891: Protein of unknown function (DUF2891); InterPro: IPR021365 This is a bacterial family of uncharacterised proteins.
Probab=44.71 E-value=11 Score=31.99 Aligned_cols=31 Identities=23% Similarity=0.639 Sum_probs=23.2
Q ss_pred hhCCCeeecCCCCCCCceeeCCCCCCchhccc
Q psy1180 86 YKNNTVVTPANWKPGDKVMIHPAVKDDELPKL 117 (140)
Q Consensus 86 ~~~~~~~~PanW~~G~~~~~~p~~~~~~~~~~ 117 (140)
..+. ..||+.|+||.+-+..|.+...+...+
T Consensus 192 y~~D-~~cp~~~EPsG~DFLSp~L~EA~LMrR 222 (326)
T PF11199_consen 192 YGKD-KDCPAHWEPSGDDFLSPCLEEADLMRR 222 (326)
T ss_pred Hhcc-cCCCcccCCCCcccccHHHHHHHHHHH
Confidence 3344 789999999988899999855555443
No 121
>KOG4614|consensus
Probab=43.44 E-value=32 Score=28.29 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=21.6
Q ss_pred eeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
.--+|+||..|+||+.-....+ .-.++.++.+.+
T Consensus 248 ~GyV~L~D~s~kIRW~g~G~aT-p~Eve~L~~~~k 281 (287)
T KOG4614|consen 248 TGYVLLLDKSGKIRWQGFGTAT-PEEVEQLLSCTK 281 (287)
T ss_pred eEEEEEEccCceEEEeecCCCC-HHHHHHHHHHHH
Confidence 3569999999999998655432 223444444443
No 122
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=40.93 E-value=70 Score=25.35 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=30.6
Q ss_pred EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 19 GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 19 sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
+|.+.+++++||+. |+ +++++++ +|++.... .-.++.+++.+.+...
T Consensus 92 ~~~~~~l~~~~~I~--------~~----PTl~~f~-~G~~v~~~----~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 92 ATRALNLAKRFAIK--------GY----PTLLLFD-KGKMYQYE----GGDRSTEKLAAFALGD 138 (224)
T ss_pred CcccHHHHHHcCCC--------cC----CEEEEEE-CCEEEEee----CCCCCHHHHHHHHHHH
Confidence 34567899999875 43 7888887 68754332 1236777777766543
No 123
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=40.05 E-value=27 Score=21.90 Aligned_cols=15 Identities=20% Similarity=0.589 Sum_probs=12.5
Q ss_pred EEEEECCCCcEEEEE
Q psy1180 48 AVYIIGPDRKLKLSI 62 (140)
Q Consensus 48 atFIIDpdG~Ir~~~ 62 (140)
++|++|++|+|.+.-
T Consensus 3 ~i~i~d~~g~i~~~N 17 (104)
T PF13426_consen 3 GIFILDPDGRILYVN 17 (104)
T ss_dssp EEEEEETTSBEEEE-
T ss_pred EEEEECCcCcEEehh
Confidence 679999999998863
No 124
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=39.94 E-value=37 Score=21.24 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=16.0
Q ss_pred eeeEEEEECCCCcEEEEE
Q psy1180 45 TVRAVYIIGPDRKLKLSI 62 (140)
Q Consensus 45 ~~RatFIIDpdG~Ir~~~ 62 (140)
|.|-.|.+|.+|+|..+.
T Consensus 41 ~dRLnv~~D~~g~I~~v~ 58 (60)
T PF11720_consen 41 PDRLNVEVDDDGVITRVR 58 (60)
T ss_pred CCcEEEEECCCCcEEEEe
Confidence 679999999999998764
No 125
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=39.88 E-value=1e+02 Score=21.82 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=26.8
Q ss_pred eEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEcc
Q psy1180 16 AIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 16 PLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~ 65 (140)
-+-.|.+.+++.+||+. |+ +++.+. ++|++.......
T Consensus 66 kVdid~~~~la~~f~V~--------sI----PTli~f-kdGk~v~~~~G~ 102 (111)
T cd02965 66 VVGRADEQALAARFGVL--------RT----PALLFF-RDGRYVGVLAGI 102 (111)
T ss_pred EEECCCCHHHHHHcCCC--------cC----CEEEEE-ECCEEEEEEeCc
Confidence 45566778999999987 54 655555 689988877653
No 126
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=39.46 E-value=41 Score=21.71 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=24.6
Q ss_pred ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHH
Q psy1180 22 NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILR 77 (140)
Q Consensus 22 ~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr 77 (140)
..++++.|++. + .++++++++.|+....+ .-++..+++..
T Consensus 64 ~~~~~~~~~i~--------~----~P~~~~~~~~~~~~~~~----~g~~~~~~l~~ 103 (105)
T cd02998 64 NKDLAKKYGVS--------G----FPTLKFFPKGSTEPVKY----EGGRDLEDLVK 103 (105)
T ss_pred chhhHHhCCCC--------C----cCEEEEEeCCCCCcccc----CCccCHHHHHh
Confidence 56888888874 4 38888888776543332 12355555543
No 127
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=39.34 E-value=62 Score=21.70 Aligned_cols=39 Identities=8% Similarity=0.186 Sum_probs=24.7
Q ss_pred CccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHH
Q psy1180 21 ENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILR 77 (140)
Q Consensus 21 ~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr 77 (140)
....++++||+. + .+++++++. | ....+... ++.+++..
T Consensus 60 ~~~~l~~~~~V~--------~----~PT~~lf~~-g-~~~~~~G~----~~~~~l~~ 98 (100)
T cd02999 60 IKPSLLSRYGVV--------G----FPTILLFNS-T-PRVRYNGT----RTLDSLAA 98 (100)
T ss_pred CCHHHHHhcCCe--------e----cCEEEEEcC-C-ceeEecCC----CCHHHHHh
Confidence 347888999875 4 389999975 5 44433332 56666554
No 128
>PF00661 Matrix: Viral matrix protein; InterPro: IPR000982 The matrix protein plays a crucial role in virus assembly, and interacts with the RNP complex as well as with the viral membrane. It is found in Morbillivirus, Paramyxovirus, Pneumovirus.; GO: 0005198 structural molecule activity, 0019068 virion assembly
Probab=38.90 E-value=37 Score=28.96 Aligned_cols=71 Identities=20% Similarity=0.342 Sum_probs=45.8
Q ss_pred CCCceeEEEcC--ccHHHHHcCCCcccccccCccceeeeEEEEE--------------------CCCCcEEEEEEccCCC
Q psy1180 11 GDFPFAIIGDE--NRDLAVKLDLLDEENKNNLETAITVRAVYII--------------------GPDRKLKLSIVYPAST 68 (140)
Q Consensus 11 ~~l~FPLlsD~--~~~va~~yGv~~~~~~~~~G~~~~~RatFII--------------------DpdG~Ir~~~~~~~~~ 68 (140)
.=.+||++.++ ++++..++-+......+.. ..+.+||. ++...++..-..|...
T Consensus 16 ~L~~fpi~~~~~g~g~L~pQvRi~~~g~~~~~----~~~~~fi~~yGFIe~~~~~~~~~g~~~~~~~~~~~Ta~~lpLG~ 91 (348)
T PF00661_consen 16 SLLPFPIVMDEGGDGRLQPQVRIQDLGDGDRK----KESYMFINTYGFIEDNDTEGPFFGEVNEQPKPPVVTAGMLPLGV 91 (348)
T ss_pred cccccCceEccCCCceEcceEEEecCCCCCCC----CCceEEEeeeEEEEecCCCCCCccccCcCCCcceEEeeeeeecc
Confidence 44689999999 9999999988766543211 12444432 1223344444556677
Q ss_pred Cc---cHHHHHHHHHhhHhh
Q psy1180 69 GR---SVDEILRVLDSLQLF 85 (140)
Q Consensus 69 gr---~~~EiLr~l~alq~~ 85 (140)
|| +.+|+|+.+..|+-+
T Consensus 92 g~~~~~p~eLl~~~~~l~I~ 111 (348)
T PF00661_consen 92 GPSTADPEELLKACTELDIT 111 (348)
T ss_pred ccCCCCHHHHHHHHhcceEE
Confidence 76 588888888877644
No 129
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=38.55 E-value=61 Score=24.01 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=32.7
Q ss_pred eEEEEECCCCcEEEEEEccC-CCCccHHHHHHHHHh-hHhhhhCC
Q psy1180 47 RAVYIIGPDRKLKLSIVYPA-STGRSVDEILRVLDS-LQLFYKNN 89 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~-~~gr~~~EiLr~l~a-lq~~~~~~ 89 (140)
...+.||+||.|..=.+.+. -.|+..+|+-+.|+. |+...+++
T Consensus 20 ~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~~~~~p 64 (165)
T TIGR03027 20 SGSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLAKYVRNP 64 (165)
T ss_pred ccceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHHHhccCC
Confidence 34689999999999888776 468899999888764 55444454
No 130
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=37.61 E-value=19 Score=23.69 Aligned_cols=38 Identities=24% Similarity=0.472 Sum_probs=25.0
Q ss_pred eEEEEECCCCcEEEEEEccC-CCCccHHHHHHHHHh-hHh
Q psy1180 47 RAVYIIGPDRKLKLSIVYPA-STGRSVDEILRVLDS-LQL 84 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~-~~gr~~~EiLr~l~a-lq~ 84 (140)
...|.||+||.|..=.+.+. -.|+.++|+-+.|+. ++.
T Consensus 30 ~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 30 SGEYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp CCSEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred ccceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 34899999999988766665 467889999888864 444
No 131
>KOG2792|consensus
Probab=36.69 E-value=66 Score=26.67 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=30.7
Q ss_pred cHHHHHcCCCccc---ccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 23 RDLAVKLDLLDEE---NKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 23 ~~va~~yGv~~~~---~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
+++|++|-|+... ..+.+=+--..=..|+|||+|.+... ....++.+|+.+.|.
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~----~GrN~~~~~~~~~I~ 272 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDY----YGRNYDADELADSIL 272 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehh----hcccCCHHHHHHHHH
Confidence 5678888877432 11111110012357899999987543 244456788877664
No 132
>PRK13907 rnhA ribonuclease H; Provisional
Probab=36.32 E-value=1.2e+02 Score=20.89 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=29.1
Q ss_pred EEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCC
Q psy1180 48 AVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNN 89 (140)
Q Consensus 48 atFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~ 89 (140)
+.+|.|.+|.+...... .....+..|++..+.+|+.+.+++
T Consensus 20 G~vi~~~~~~~~~~~~~-~~~tn~~AE~~All~aL~~a~~~g 60 (128)
T PRK13907 20 GVFIKGVQPAVQLSLPL-GTMSNHEAEYHALLAALKYCTEHN 60 (128)
T ss_pred EEEEEECCeeEEEEecc-cccCCcHHHHHHHHHHHHHHHhCC
Confidence 56678888877654321 123346889999999999988775
No 133
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=35.99 E-value=75 Score=20.50 Aligned_cols=28 Identities=7% Similarity=0.002 Sum_probs=17.9
Q ss_pred ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEE
Q psy1180 22 NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 62 (140)
Q Consensus 22 ~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~ 62 (140)
+..++++||+. ++ ++ +++.++|++....
T Consensus 64 ~~~~~~~~~i~--------~~----Pt-~~~~~~g~~~~~~ 91 (104)
T cd02997 64 HDALKEEYNVK--------GF----PT-FKYFENGKFVEKY 91 (104)
T ss_pred cHHHHHhCCCc--------cc----cE-EEEEeCCCeeEEe
Confidence 56888888874 33 54 4555688876543
No 134
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=35.39 E-value=52 Score=21.76 Aligned_cols=18 Identities=6% Similarity=0.049 Sum_probs=14.5
Q ss_pred eeEEEEECCCCcEEEEEE
Q psy1180 46 VRAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~ 63 (140)
.|+.|+.||||.+..+..
T Consensus 107 ~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 107 QETFFLKDPSGNALEFKA 124 (125)
T ss_pred eeEEEEECCCCCEEEEee
Confidence 388999999998876543
No 135
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=35.23 E-value=1.1e+02 Score=19.45 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=27.1
Q ss_pred CCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 12 DFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 12 ~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
++++.++.=.+..-.++||+. + .+++ +| ||++++.-. ..+.+|+.++|+
T Consensus 28 ~i~~ei~~~~~~~~~~~ygv~--------~----vPal-vI--ng~~~~~G~-----~p~~~el~~~l~ 76 (76)
T PF13192_consen 28 GIEVEIIDIEDFEEIEKYGVM--------S----VPAL-VI--NGKVVFVGR-----VPSKEELKELLE 76 (76)
T ss_dssp TEEEEEEETTTHHHHHHTT-S--------S----SSEE-EE--TTEEEEESS-------HHHHHHHHHH
T ss_pred CCeEEEEEccCHHHHHHcCCC--------C----CCEE-EE--CCEEEEEec-----CCCHHHHHHHhC
Confidence 355555544444444888887 3 3677 66 488776521 135667766654
No 136
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=35.20 E-value=55 Score=22.13 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=16.6
Q ss_pred eeEEEEECCCCcEEEEEEcc
Q psy1180 46 VRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~ 65 (140)
.|..|+-||+|.+.....+|
T Consensus 103 ~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 103 GRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eeEEEEECCCCCEEEEEecc
Confidence 49999999999988776553
No 137
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=34.55 E-value=1.5e+02 Score=23.59 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=18.7
Q ss_pred eeEEEEECCCCcEEEEEEccC
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPA 66 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~ 66 (140)
.|.=|++|++|++..+++++.
T Consensus 264 ~~vD~~~~~~g~~~viEvN~~ 284 (315)
T TIGR01205 264 ARVDFFLDEEGEIYLNEINTI 284 (315)
T ss_pred EEEEEEEeCCCCEEEEEeeCC
Confidence 589999999999999999875
No 138
>PF13728 TraF: F plasmid transfer operon protein
Probab=34.41 E-value=1.4e+02 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=18.4
Q ss_pred ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcE
Q psy1180 22 NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKL 58 (140)
Q Consensus 22 ~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~I 58 (140)
+..+++.+|+. ..+++|+|++++.-
T Consensus 172 ~~g~~~~l~v~------------~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 172 DPGQAKRLGVK------------VTPALFLVNPNTKK 196 (215)
T ss_pred CHHHHHHcCCC------------cCCEEEEEECCCCe
Confidence 56677777763 35999999998833
No 139
>PLN00050 expansin A; Provisional
Probab=34.24 E-value=21 Score=29.03 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=10.0
Q ss_pred eeecCCCCCCCc
Q psy1180 91 VVTPANWKPGDK 102 (140)
Q Consensus 91 ~~~PanW~~G~~ 102 (140)
.+.|+||++|+-
T Consensus 230 ~V~Pa~W~~G~t 241 (247)
T PLN00050 230 NAAPSNWAFGQT 241 (247)
T ss_pred ceeCCCCCCCCe
Confidence 567999999974
No 140
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=34.13 E-value=1.6e+02 Score=24.22 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=18.6
Q ss_pred eeEEEEECCCCcEEEEEEccC
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPA 66 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~ 66 (140)
.|.=|++|++|++...++++.
T Consensus 280 ~rvDf~~~~~g~~~vlEiNt~ 300 (333)
T PRK01966 280 ARVDFFLTEDGEIYLNEINTM 300 (333)
T ss_pred EEEEEEEcCCCCEEEEEeeCC
Confidence 599999999999999998864
No 141
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=33.16 E-value=1.5e+02 Score=22.71 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=19.6
Q ss_pred CccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEE-EEEEc
Q psy1180 21 ENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLK-LSIVY 64 (140)
Q Consensus 21 ~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir-~~~~~ 64 (140)
.+.++++.||+. ++ +++.+.+ +|... ..+..
T Consensus 65 ~~~~l~~~~~V~--------~~----Pt~~~f~-~g~~~~~~~~G 96 (215)
T TIGR02187 65 EDKEEAEKYGVE--------RV----PTTIILE-EGKDGGIRYTG 96 (215)
T ss_pred ccHHHHHHcCCC--------cc----CEEEEEe-CCeeeEEEEee
Confidence 567888888876 43 6666665 46654 34443
No 142
>PHA01548 hypothetical protein
Probab=32.15 E-value=1.7e+02 Score=22.01 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=29.7
Q ss_pred eeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhHhhhhCCCeeecCCCCCCCceeeC
Q psy1180 45 TVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIH 106 (140)
Q Consensus 45 ~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq~~~~~~~~~~PanW~~G~~~~~~ 106 (140)
..|.+.+||+||+--+... +- ++.++|..-. .+-||-|.+--..++|
T Consensus 103 dalrvvlidKdGkayha~S---------Qg---VVssIQkiis---IvGpapwt~EPl~iVp 149 (167)
T PHA01548 103 DALRVVLIDKDGKAYHAVS---------QG---VVSSIQKIIS---IVGPAPWTDEPLAIVP 149 (167)
T ss_pred eeeEEEEEccCCCEeeeeh---------HH---HHHHHHHHHH---HhCCCCCCCCCeeEEE
Confidence 4689999999998644321 11 2333343322 5679999887766664
No 143
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=31.46 E-value=1.3e+02 Score=19.80 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=26.1
Q ss_pred cCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 20 DENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 20 D~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
+...+++++|++. + .++++++. +|.+ ..... .++.+++.+.+++
T Consensus 59 ~~~~~~~~~~~I~--------~----~Pt~~l~~-~~~~-~~~~G----~~~~~~l~~~~~~ 102 (104)
T cd03000 59 TAYSSIASEFGVR--------G----YPTIKLLK-GDLA-YNYRG----PRTKDDIVEFANR 102 (104)
T ss_pred ccCHhHHhhcCCc--------c----ccEEEEEc-CCCc-eeecC----CCCHHHHHHHHHh
Confidence 3456888888875 3 37888884 4433 32222 3456777666654
No 144
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=31.41 E-value=64 Score=20.75 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=11.5
Q ss_pred eeEEEEECCCCcEEEE
Q psy1180 46 VRAVYIIGPDRKLKLS 61 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~ 61 (140)
.|..+|.||+|.+...
T Consensus 92 ~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 92 QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEEE-TTS-EEEE
T ss_pred eEEEEEECCCCCEEEe
Confidence 4899999999987654
No 145
>PLN03023 Expansin-like B1; Provisional
Probab=31.25 E-value=26 Score=28.45 Aligned_cols=12 Identities=42% Similarity=0.902 Sum_probs=9.8
Q ss_pred eeecCCCCCCCc
Q psy1180 91 VVTPANWKPGDK 102 (140)
Q Consensus 91 ~~~PanW~~G~~ 102 (140)
.+.|+||++|.-
T Consensus 228 nViPa~Wk~G~T 239 (247)
T PLN03023 228 NVIPSDWKAGVA 239 (247)
T ss_pred ceeCCCCCCCCE
Confidence 457999999974
No 146
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.07 E-value=63 Score=21.61 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.3
Q ss_pred eeEEEEECCCCcEEEEE
Q psy1180 46 VRAVYIIGPDRKLKLSI 62 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~ 62 (140)
.|..++.||||.+..+.
T Consensus 101 ~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 101 QRVVRFYDPDKHIIEVG 117 (120)
T ss_pred cEEEEEECCCCCEEEEe
Confidence 38999999999987654
No 147
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.45 E-value=65 Score=21.03 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.5
Q ss_pred eeEEEEECCCCcEEEEEE
Q psy1180 46 VRAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~ 63 (140)
.++.++.||+|.+..+..
T Consensus 107 ~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 107 ITSVYFRDPDGNLIELSN 124 (125)
T ss_pred ccEEEEECCCCCEEEeee
Confidence 378999999999876643
No 148
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=30.23 E-value=78 Score=20.73 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=19.4
Q ss_pred EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEE
Q psy1180 19 GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLK 59 (140)
Q Consensus 19 sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir 59 (140)
.|.+.+++++|++. ++ +++++. ++|+..
T Consensus 58 ~~~~~~~~~~~~v~--------~~----Pt~~~~-~~g~~~ 85 (101)
T cd03003 58 CGDDRMLCRSQGVN--------SY----PSLYVF-PSGMNP 85 (101)
T ss_pred CCccHHHHHHcCCC--------cc----CEEEEE-cCCCCc
Confidence 45667888888875 33 677677 678754
No 149
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=30.15 E-value=46 Score=21.10 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=21.8
Q ss_pred CceeEEEcCc----cHHHHHcCCCcccccccCccceeeeEEEEE
Q psy1180 13 FPFAIIGDEN----RDLAVKLDLLDEENKNNLETAITVRAVYII 52 (140)
Q Consensus 13 l~FPLlsD~~----~~va~~yGv~~~~~~~~~G~~~~~RatFII 52 (140)
+.||=..=+. +++|..||+..+.. |-- |.|.++|.
T Consensus 20 ~~f~pM~~~~R~~vHdla~~~gl~SeS~----d~E-p~R~V~v~ 58 (59)
T cd06006 20 LRFPPMRSPQRAFIHELAKDYGLYSESQ----DPE-PKRSVFVK 58 (59)
T ss_pred eeCCCCCHHHHHHHHHHHHHcCCeeEec----CCC-CCcEEEEe
Confidence 4455444333 46888999986643 322 67998874
No 150
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=29.69 E-value=34 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=20.3
Q ss_pred ccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEE
Q psy1180 22 NRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 22 ~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~ 63 (140)
..+||..||+..+. +-++|| ++|++.+-..
T Consensus 66 Sn~IAe~~~V~HeS-----------PQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 66 SNAIAEDFGVKHES-----------PQVILI-KNGKVVWHAS 95 (105)
T ss_dssp HHHHHHHHT----S-----------SEEEEE-ETTEEEEEEE
T ss_pred HHHHHHHhCCCcCC-----------CcEEEE-ECCEEEEECc
Confidence 56899999998764 778888 5788887654
No 151
>PTZ00102 disulphide isomerase; Provisional
Probab=29.59 E-value=1.1e+02 Score=25.95 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=34.9
Q ss_pred CceeEE-EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhh
Q psy1180 13 FPFAII-GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82 (140)
Q Consensus 13 l~FPLl-sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~al 82 (140)
+.|--+ ++.+.+++++||+. |. ++++++...+.+ .+. -.|+.+++.+.++.+
T Consensus 85 i~~~~vd~~~~~~l~~~~~i~--------~~----Pt~~~~~~g~~~--~y~----g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 85 IVLASVDATEEMELAQEFGVR--------GY----PTIKFFNKGNPV--NYS----GGRTADGIVSWIKKL 137 (477)
T ss_pred EEEEEEECCCCHHHHHhcCCC--------cc----cEEEEEECCceE--Eec----CCCCHHHHHHHHHHh
Confidence 444433 56788999999975 43 788888765544 211 247788888887754
No 152
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=29.53 E-value=70 Score=23.36 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=15.5
Q ss_pred eeEEEEECCCCcEEEEEE
Q psy1180 46 VRAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~ 63 (140)
.++++++|++|+++....
T Consensus 80 vPtivFld~~g~vi~~i~ 97 (130)
T cd02960 80 VPRIMFVDPSLTVRADIT 97 (130)
T ss_pred cCeEEEECCCCCCccccc
Confidence 599999999999987764
No 153
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=29.52 E-value=2.5e+02 Score=23.09 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=18.3
Q ss_pred eeEEEEECCCCcEEEEEEccC
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPA 66 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~ 66 (140)
.|.=|++|++|.+...++++.
T Consensus 289 ~rvDf~l~~~g~~~llEINt~ 309 (343)
T PRK14568 289 ARVDMFLQEDGTVVLNEVNTL 309 (343)
T ss_pred EEEEEEEeCCCCEEEEEeeCC
Confidence 599999999999988888853
No 154
>PLN00193 expansin-A; Provisional
Probab=29.07 E-value=29 Score=28.40 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=9.9
Q ss_pred eeecCCCCCCCc
Q psy1180 91 VVTPANWKPGDK 102 (140)
Q Consensus 91 ~~~PanW~~G~~ 102 (140)
.+.|+||++|.-
T Consensus 238 ~viPa~W~~G~t 249 (256)
T PLN00193 238 NVVPANWGFGQT 249 (256)
T ss_pred ceeCCCCCCCCe
Confidence 567999999964
No 155
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=29.05 E-value=78 Score=20.94 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.9
Q ss_pred eeEEEEECCCCcEEEEEE
Q psy1180 46 VRAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~ 63 (140)
.|+.++.||+|.......
T Consensus 91 ~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 91 PDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred CCEEEEECCCCCEEEEec
Confidence 378999999999887653
No 156
>PHA03259 Capsid triplex subunit 2; Provisional
Probab=28.90 E-value=58 Score=27.32 Aligned_cols=16 Identities=31% Similarity=0.889 Sum_probs=14.0
Q ss_pred cCCCCCCCceeeCCCC
Q psy1180 94 PANWKPGDKVMIHPAV 109 (140)
Q Consensus 94 PanW~~G~~~~~~p~~ 109 (140)
|..|..||.+.+-|++
T Consensus 96 PF~w~nGD~L~liPPv 111 (302)
T PHA03259 96 PVLWEKGDTLTLLPPL 111 (302)
T ss_pred ceeecCCCEEEEeCCc
Confidence 9999999998777776
No 157
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=28.83 E-value=60 Score=23.96 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=14.4
Q ss_pred ccceeeeEEEEECCCCcEEE
Q psy1180 41 ETAITVRAVYIIGPDRKLKL 60 (140)
Q Consensus 41 G~~~~~RatFIIDpdG~Ir~ 60 (140)
|+ +..-+|+||+.|+|+.
T Consensus 139 gi--~~~~i~~i~~~~~~~~ 156 (157)
T smart00775 139 GI--PPSRIFTINPKGEVHQ 156 (157)
T ss_pred CC--ChhhEEEECCCCcccc
Confidence 55 4578999999999863
No 158
>PF09717 CPW_WPC: Plasmodium falciparum domain of unknown function (CPW_WPC); InterPro: IPR006387 This entry represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats. It is named for motifs of CPxxW and (less well conserved) WPC. Its function is unknown.
Probab=28.61 E-value=39 Score=21.01 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=12.4
Q ss_pred eeecCCCC-CCCceeeCC
Q psy1180 91 VVTPANWK-PGDKVMIHP 107 (140)
Q Consensus 91 ~~~PanW~-~G~~~~~~p 107 (140)
..||.+|. .++..-++|
T Consensus 7 ~~CP~~W~~~~~~~C~ap 24 (60)
T PF09717_consen 7 QPCPEGWILSDDGSCIAP 24 (60)
T ss_pred cccccccccCCCCeEcCC
Confidence 56999999 555566655
No 159
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=28.51 E-value=1.4e+02 Score=17.97 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=24.7
Q ss_pred CCceeEEE-cCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEc
Q psy1180 12 DFPFAIIG-DENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 12 ~l~FPLls-D~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~ 64 (140)
++.|--+. +.+.++++.||+. +. +++++.. +|.+...+..
T Consensus 41 ~~~~~~i~~~~~~~~~~~~~v~--------~~----P~~~~~~-~g~~~~~~~g 81 (93)
T cd02947 41 KVKFVKVDVDENPELAEEYGVR--------SI----PTFLFFK-NGKEVDRVVG 81 (93)
T ss_pred CceEEEEECCCChhHHHhcCcc--------cc----cEEEEEE-CCEEEEEEec
Confidence 45554443 3457888888875 43 6777775 5776665543
No 160
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=28.45 E-value=86 Score=21.08 Aligned_cols=18 Identities=11% Similarity=-0.009 Sum_probs=15.0
Q ss_pred eEEEEECCCCcEEEEEEc
Q psy1180 47 RAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~ 64 (140)
|..|+.||||........
T Consensus 100 ~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 100 GLIRFADPDGNRHELFWG 117 (120)
T ss_pred EEEEEECCCCCEEEEEec
Confidence 789999999998776654
No 161
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=28.43 E-value=1.3e+02 Score=20.18 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.9
Q ss_pred eeEEEEECCCCcEEEEEEc
Q psy1180 46 VRAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~ 64 (140)
.+..++.||+|....++..
T Consensus 92 ~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 92 GDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred ccEEEEECCCCCEEEEEeC
Confidence 3789999999999888754
No 162
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=28.36 E-value=89 Score=21.27 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=16.5
Q ss_pred eEEEEECCCCcEEEEEEccCC
Q psy1180 47 RAVYIIGPDRKLKLSIVYPAS 67 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~~ 67 (140)
+..++.||||........+..
T Consensus 102 ~~~~f~DPdG~~iE~~~~~~~ 122 (124)
T cd08361 102 AFIAFRDPSGNSIELVVRPSH 122 (124)
T ss_pred eEEEEECcCCCEEEEEEeeec
Confidence 567999999998887766543
No 163
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=27.38 E-value=1e+02 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=27.2
Q ss_pred eeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEcc
Q psy1180 15 FAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 15 FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~ 65 (140)
+-+=.|...++++.||+. ++ ++.++. ++|++..+..+.
T Consensus 50 ~kVDvD~~~~la~~~~V~--------~i----PTf~~f-k~G~~v~~~~G~ 87 (114)
T cd02954 50 YLVDIDEVPDFNKMYELY--------DP----PTVMFF-FRNKHMKIDLGT 87 (114)
T ss_pred EEEECCCCHHHHHHcCCC--------CC----CEEEEE-ECCEEEEEEcCC
Confidence 334456778999999987 43 666666 689998888653
No 164
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.55 E-value=93 Score=20.87 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=13.4
Q ss_pred eEEEEECCCCcEEEEE
Q psy1180 47 RAVYIIGPDRKLKLSI 62 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~ 62 (140)
++.|+.||||.+..+.
T Consensus 107 ~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 107 YGRSFADLDGHLWEVL 122 (124)
T ss_pred EEEEEECCCCCEEEEE
Confidence 6789999999987654
No 165
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=26.47 E-value=2.5e+02 Score=22.43 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=34.5
Q ss_pred eEEEEECC-CCcEEEEEEccCC----CCccHHHHHHHHHhhHhhhhCCCeeecCCCCCCCceeeCCC
Q psy1180 47 RAVYIIGP-DRKLKLSIVYPAS----TGRSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHPA 108 (140)
Q Consensus 47 RatFIIDp-dG~Ir~~~~~~~~----~gr~~~EiLr~l~alq~~~~~~~~~~PanW~~G~~~~~~p~ 108 (140)
.-++.++| .|+.... +++.. .|-..+|.-+.++.|..--..+.-..--.|++||-+|-.--
T Consensus 184 hPlVr~hp~tG~k~L~-~n~~~~~~i~gl~~~es~~ll~~L~~~~~~p~~~~~~~w~~GD~viwDNr 249 (277)
T PRK09553 184 HPVVRTHPVSGRQALF-VNEGFTTRIVDLSEKESEALLGFLFAHITKPEFQVRWRWQPNDVAIWDNR 249 (277)
T ss_pred CCeEEeCCCCCceeEE-eccccccEeCCCCHHHHHHHHHHHHHHhcCcCeEEEEecCCCCEEEEcCc
Confidence 44667777 6665544 44321 23445555555555432222232556778999999987543
No 166
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.09 E-value=90 Score=20.77 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=14.0
Q ss_pred eEEEEECCCCcEEEEEE
Q psy1180 47 RAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~ 63 (140)
|..+|.||+|.+.....
T Consensus 105 ~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 105 REFTARDPEGNLWTFGT 121 (122)
T ss_pred EEEEEECCCCCEEEEec
Confidence 78899999999876643
No 167
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=26.06 E-value=87 Score=20.94 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.5
Q ss_pred eeEEEEECCCCcEEEE
Q psy1180 46 VRAVYIIGPDRKLKLS 61 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~ 61 (140)
.|..||.||+|.....
T Consensus 101 ~~~~~~~DPdG~~ie~ 116 (120)
T cd08350 101 MREFALVDPDGNLLRF 116 (120)
T ss_pred eeEEEEECCCCCEEEe
Confidence 4899999999987654
No 168
>PF04486 SchA_CurD: SchA/CurD like domain; InterPro: IPR007575 Proteins having this domain have been identified mainly in species of the Streptomyces genus. Two of them are known to be part of gene clusters involved in the synthesis of polyketide-based spore pigments, homologous to clusters involved in the synthesis of polyketide antibiotics. Their function is unknown, but they has been speculated to contain a NAD(P) binding site []. Many of these proteins contain two copies of the domain.
Probab=25.49 E-value=1.9e+02 Score=20.84 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=40.9
Q ss_pred CCCceeEEEcCccHHHHHcC-CCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHH
Q psy1180 11 GDFPFAIIGDENRDLAVKLD-LLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80 (140)
Q Consensus 11 ~~l~FPLlsD~~~~va~~yG-v~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~ 80 (140)
+-|.||+=.-...++|+.+- -..+......+-. -.|++.++-.|-.||.+.+.. +...++|.+.
T Consensus 4 hALtypvkpG~g~~vA~llA~~~~~~a~~d~~~~-l~~TtvF~~dd~VVR~vdv~G-----dl~a~~rh~a 68 (114)
T PF04486_consen 4 HALTYPVKPGSGDAVARLLASYQDPAAAGDPATR-LLRTTVFQRDDRVVRVVDVEG-----DLDAALRHLA 68 (114)
T ss_pred EEEEeecCCCcHHHHHHHHccCCChhhccCCCCc-eEEEEEEEECCEEEEEEEecC-----CHHHHHHHhh
Confidence 45788888888889999886 2233222111212 258888887889999998753 4555665553
No 169
>PF09979 DUF2213: Uncharacterized protein conserved in bacteria (DUF2213); InterPro: IPR016913 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.06 E-value=52 Score=25.12 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=29.0
Q ss_pred HHHHHHHhhHhhhhCC-CeeecCCCCC-------------CCceeeCCCCCCchhccc
Q psy1180 74 EILRVLDSLQLFYKNN-TVVTPANWKP-------------GDKVMIHPAVKDDELPKL 117 (140)
Q Consensus 74 EiLr~l~alq~~~~~~-~~~~PanW~~-------------G~~~~~~p~~~~~~~~~~ 117 (140)
+.|+.++.+..+..|+ ..++|.||+. |+.+...-.+.+++|-+.
T Consensus 55 ~sl~Sf~gkPvt~~Hp~~~v~~~n~k~~~vG~v~~~~~~d~~~l~~~l~I~d~~aI~~ 112 (170)
T PF09979_consen 55 ESLASFNGKPVTDDHPPEMVTPDNWKEYVVGTVGNVRRFDGDYLRADLTIYDAEAIDA 112 (170)
T ss_pred HHHHHhcCCceeecCCCCccCCCChhhccEEEEccccEEcCCcEEEEEEEeCHHHHHH
Confidence 3355566778889998 6899999993 555555444555555443
No 170
>PTZ00051 thioredoxin; Provisional
Probab=24.97 E-value=1.9e+02 Score=18.42 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=25.1
Q ss_pred CceeEE-EcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEc
Q psy1180 13 FPFAII-GDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 13 l~FPLl-sD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~ 64 (140)
+.|-.+ .|....++++||+. ++ ++ |++-.+|++......
T Consensus 50 ~~~~~vd~~~~~~~~~~~~v~--------~~----Pt-~~~~~~g~~~~~~~G 89 (98)
T PTZ00051 50 MVFVKVDVDELSEVAEKENIT--------SM----PT-FKVFKNGSVVDTLLG 89 (98)
T ss_pred cEEEEEECcchHHHHHHCCCc--------ee----eE-EEEEeCCeEEEEEeC
Confidence 444332 33457889999885 43 55 455589999887654
No 171
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=24.59 E-value=1.2e+02 Score=24.25 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=18.2
Q ss_pred eEEEEECCCCcEEEEEEccCCCCccHHHHHHHH
Q psy1180 47 RAVYIIGPDRKLKLSIVYPASTGRSVDEILRVL 79 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l 79 (140)
++.|+.|.+|.++.+.=++ ..+++.+.|
T Consensus 221 Paiv~~d~~G~~~~v~G~~-----~~~~L~~~l 248 (251)
T PRK11657 221 PAIYYMDKDGTLQQVVGLP-----DPAQLAEIM 248 (251)
T ss_pred CEEEEECCCCCEEEecCCC-----CHHHHHHHh
Confidence 8999999999876553221 345555554
No 172
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=24.27 E-value=77 Score=22.06 Aligned_cols=18 Identities=11% Similarity=0.438 Sum_probs=15.1
Q ss_pred eeEEEEECCCCcEEEEEE
Q psy1180 46 VRAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~ 63 (140)
.++++++|++|++...++
T Consensus 77 vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 77 IPRILFLDPSGDVHPEII 94 (117)
T ss_pred cceEEEECCCCCCchhhc
Confidence 489999999999977644
No 173
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=24.12 E-value=1.4e+02 Score=26.03 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=50.2
Q ss_pred cCccCCCceeEEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCC-cEEEEEEccCCCCcc-----------HHH
Q psy1180 7 LDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDR-KLKLSIVYPASTGRS-----------VDE 74 (140)
Q Consensus 7 ~~~~~~l~FPLlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG-~Ir~~~~~~~~~gr~-----------~~E 74 (140)
++++...+-+.++|....+.+...+-.....+-.| +...-|.+|+++ ..+.+.++|- +.|+ +..
T Consensus 232 gdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G---~~niQ~av~~~~~~~~viEvNpR-vSrssaLaskAtgypia~ 307 (400)
T COG0458 232 GDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEG---GCNIQFAVDPGGGELYVIEINPR-VSRSSALASKATGYPIAK 307 (400)
T ss_pred cceeeeccccccccHHHHHHHHHHHHHHHHhcccC---CCceeEEEcCCCceEEEEEecCC-cCcchhhhhhccCChHHH
Confidence 44556677788888766665533332111111114 247899999985 7888888762 2222 111
Q ss_pred HHHHHH---hhHhhhhCCCeeecCCCCCCCce
Q psy1180 75 ILRVLD---SLQLFYKNNTVVTPANWKPGDKV 103 (140)
Q Consensus 75 iLr~l~---alq~~~~~~~~~~PanW~~G~~~ 103 (140)
+.+.+. .|......-+..+||.|.|+-+-
T Consensus 308 vaakla~g~~l~Ei~n~it~~t~a~fePsldy 339 (400)
T COG0458 308 VAAKLAVGYTLDEIRNDITGRTPASFEPSLDY 339 (400)
T ss_pred HHHHhhcccCchhhcCccccccccccCCccce
Confidence 211111 12222222224689999999883
No 174
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=23.87 E-value=1.5e+02 Score=20.91 Aligned_cols=36 Identities=28% Similarity=0.168 Sum_probs=23.7
Q ss_pred EEEEECCCCcEEEEEEccCCCCccHHHHH-HHHHhhHhhh
Q psy1180 48 AVYIIGPDRKLKLSIVYPASTGRSVDEIL-RVLDSLQLFY 86 (140)
Q Consensus 48 atFIIDpdG~Ir~~~~~~~~~gr~~~EiL-r~l~alq~~~ 86 (140)
.+++|-.||..+.+-+... .+.+||+ ++|+.+....
T Consensus 2 vi~~I~~dG~tk~VNV~~c---~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGC---FNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEETTTEEEEEE--S-----HHHHHHHHHHHHHTSS-
T ss_pred EEEEECCCCcEEEEEECCC---CCHHHHHHHHHHHcCCcc
Confidence 4688889999988765432 4678887 5778877554
No 175
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=23.76 E-value=2.6e+02 Score=23.42 Aligned_cols=60 Identities=8% Similarity=0.156 Sum_probs=32.0
Q ss_pred eEEEEECC-CCcEEEEEEccC-CCC---cc---HHHH---HHHHHhhHhhhhCCCeeecCCCCCCCceeeC
Q psy1180 47 RAVYIIGP-DRKLKLSIVYPA-STG---RS---VDEI---LRVLDSLQLFYKNNTVVTPANWKPGDKVMIH 106 (140)
Q Consensus 47 RatFIIDp-dG~Ir~~~~~~~-~~g---r~---~~Ei---Lr~l~alq~~~~~~~~~~PanW~~G~~~~~~ 106 (140)
+-+|-+|| +|.+..+-.+.. ... -+ .+++ .++++.+...-..+....-..|+|||-+|..
T Consensus 256 ~Pvi~~~p~~G~~~~ir~~~~~r~~~~~~~~~~~~~~~~~~~Al~~l~~~~~~p~~~~~~~l~pGd~vi~D 326 (362)
T TIGR02410 256 QPVLTLDPSTGELTQIRWNNSDRAVMDCLNWSSPYDVPKFYKAIRRFNKIITDPDNEIEFKLRPGTVLIFD 326 (362)
T ss_pred CCEEEecCCCCcEEEEEcCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcChhcEEEEEcCCccEEEEe
Confidence 46778885 788755432211 010 11 3333 3444444333322224567789999999874
No 176
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=23.73 E-value=2.1e+02 Score=25.08 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=31.3
Q ss_pred EEEcCccHHHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 17 IIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 17 LlsD~~~~va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
.+.|.++.+++.||+. ..+.+||=|||-|-+.+.. ...+.+++.|+.
T Consensus 497 ~~~d~~~~~~~~~~~~-------------~~~~~LvRPDg~va~~~~~-----~~~~~~~~~l~~ 543 (547)
T PRK08132 497 VLEDADGLAAERYDAR-------------PGTVYLIRPDQHVAARWRT-----PDAAAVRAALAR 543 (547)
T ss_pred cccCcccHHHHHhCCC-------------CCeEEEECCCceEEEEecC-----CCHHHHHHHHHH
Confidence 3557777777777654 1357899999999887522 246666666654
No 177
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=23.53 E-value=1.5e+02 Score=19.81 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=24.5
Q ss_pred ccHHHH-HcCCCcccccccCccceeeeEEEEECCCCcEEEEEEccCCCCccHHHHHHH
Q psy1180 22 NRDLAV-KLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRV 78 (140)
Q Consensus 22 ~~~va~-~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~ 78 (140)
+..+++ .||+. + .+++++.++++...+. |+. ..|+.+.++..
T Consensus 66 ~~~~~~~~~~v~--------~----~Pti~~f~~~~~~~~~--y~g-~~~~~~~l~~f 108 (109)
T cd02993 66 QREFAKEELQLK--------S----FPTILFFPKNSRQPIK--YPS-EQRDVDSLLMF 108 (109)
T ss_pred chhhHHhhcCCC--------c----CCEEEEEcCCCCCcee--ccC-CCCCHHHHHhh
Confidence 355665 36664 3 3788888887764433 221 13677776554
No 178
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=23.48 E-value=1.6e+02 Score=22.68 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.2
Q ss_pred eeEEEEECCCCcEEEEEEccCC
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPAS 67 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~~ 67 (140)
.|.=|.+|.+|++...++++.+
T Consensus 154 ~RiD~rv~~~g~~~~lEiNt~P 175 (203)
T PF07478_consen 154 ARIDFRVDEDGKPYFLEINTIP 175 (203)
T ss_dssp EEEEEEEETTTEEEEEEEESS-
T ss_pred eeEEEEeccCCceEEEeccCcc
Confidence 4999999999999999998764
No 179
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=23.17 E-value=2.7e+02 Score=23.40 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=17.5
Q ss_pred eeEEEEECC-CCcEEEEEEccC
Q psy1180 46 VRAVYIIGP-DRKLKLSIVYPA 66 (140)
Q Consensus 46 ~RatFIIDp-dG~Ir~~~~~~~ 66 (140)
.|.=|++|+ +|.+...++++.
T Consensus 294 ~RvDf~l~~~~g~~yvlEiNt~ 315 (364)
T PRK14570 294 ARIDFLIEKDTGLIYLNEINTI 315 (364)
T ss_pred EEEEEEEECCCCcEEEEEeeCC
Confidence 499999997 499988888864
No 180
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.08 E-value=1.7e+02 Score=18.01 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=24.1
Q ss_pred eEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHh
Q psy1180 47 RAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDS 81 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~a 81 (140)
=.+|.-|.+ .++..+.+....++++++|+.|++
T Consensus 18 W~lyw~~~~--~~W~~Y~~~~~~~~L~~~l~~i~~ 50 (57)
T PF11225_consen 18 WKLYWMDHD--GKWHPYPPLPESKDLEALLREIEK 50 (57)
T ss_pred EEEEEECCC--CCEeECCCcccCCCHHHHHHHHhh
Confidence 346666666 466666667788899999998864
No 181
>PF14433 SUKH-3: SUKH-3 immunity protein
Probab=22.99 E-value=1.1e+02 Score=21.81 Aligned_cols=34 Identities=21% Similarity=0.049 Sum_probs=25.9
Q ss_pred eeEEEEECCCCcEEEEEE-ccCCCCccHHHHHHHH
Q psy1180 46 VRAVYIIGPDRKLKLSIV-YPASTGRSVDEILRVL 79 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~-~~~~~gr~~~EiLr~l 79 (140)
-.++++||.+|+|-...- +....|.++++.|..|
T Consensus 102 ~~~~l~ide~Grvy~~~~~~~~~lG~~~~~al~~L 136 (142)
T PF14433_consen 102 GHAILAIDESGRVYGLDDTGLWYLGDDIDEALENL 136 (142)
T ss_pred CCEEEEEeCCCCEEEecCCeeEEeCCCHHHHHHHH
Confidence 368999999999977764 3346788888887654
No 182
>PTZ00102 disulphide isomerase; Provisional
Probab=22.83 E-value=1.4e+02 Score=25.31 Aligned_cols=34 Identities=6% Similarity=0.161 Sum_probs=23.3
Q ss_pred eeEEEEECCCCcEEEEEEccCCCCccHHHHHHHHHhhH
Q psy1180 46 VRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQ 83 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~~~~gr~~~EiLr~l~alq 83 (140)
.++++++++++++...+.. .++.+++.+.|+...
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEG----ERTVEGFKEFVNKHA 465 (477)
T ss_pred cCeEEEEECCCcceeEecC----cCCHHHHHHHHHHcC
Confidence 3889999888776433322 367888888887643
No 183
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=22.30 E-value=1.8e+02 Score=17.18 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.2
Q ss_pred eeE-EEEECCCCcEEEEEEcc
Q psy1180 46 VRA-VYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 46 ~Ra-tFIIDpdG~Ir~~~~~~ 65 (140)
+++ -..+||||+.+.+.+..
T Consensus 27 v~GsY~y~~pdG~~~~V~Y~A 47 (52)
T PF00379_consen 27 VRGSYSYIDPDGQTRTVTYVA 47 (52)
T ss_pred EEEEEEEECCCCCEEEEEEEC
Confidence 455 56899999998887544
No 184
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.23 E-value=1.6e+02 Score=19.46 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.4
Q ss_pred eEEEEECCCCcEEEEEE
Q psy1180 47 RAVYIIGPDRKLKLSIV 63 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~ 63 (140)
++.|+.||+|....+..
T Consensus 102 ~~~~~~DPdG~~iEi~~ 118 (125)
T cd07255 102 EALYLSDPEGNGIEIYA 118 (125)
T ss_pred eEEEEECCCCCEEEEEE
Confidence 78999999999887654
No 185
>PF08750 CNP1: CNP1-like family; InterPro: IPR014861 This group of proteins are likely to be lipoproteins. CNP1 (cryptic neisserial protein) has been expressed in Escherichia coli and shown to be localised periplasmicly [].
Probab=22.14 E-value=94 Score=23.03 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=15.8
Q ss_pred eEEEEECCCCcEEEEEEccCCCC
Q psy1180 47 RAVYIIGPDRKLKLSIVYPASTG 69 (140)
Q Consensus 47 RatFIIDpdG~Ir~~~~~~~~~g 69 (140)
+.+.=|.+||+|||+.+--...|
T Consensus 41 ~~Sisvg~DgvVRY~lv~~S~~G 63 (139)
T PF08750_consen 41 PKSISVGPDGVVRYTLVVRSPSG 63 (139)
T ss_pred hhheEECCCCcEEEEEEEcCCCC
Confidence 33444568999999997654444
No 186
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=22.02 E-value=1.5e+02 Score=19.60 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=15.1
Q ss_pred eeEEEEECCCCcEEEEEEc
Q psy1180 46 VRAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~ 64 (140)
.++.|+-||+|........
T Consensus 92 ~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 92 GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred ceEEEEECCCCCEEEEEec
Confidence 3789999999998766543
No 187
>PRK06724 hypothetical protein; Provisional
Probab=22.00 E-value=1.4e+02 Score=20.97 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=16.0
Q ss_pred eeEEEEECCCCcEEEEEEcc
Q psy1180 46 VRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~ 65 (140)
.|+.|+-||||.......++
T Consensus 105 ~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 105 YYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEEEEEECCCCCEEEEEeCC
Confidence 48999999999988765543
No 188
>PF09561 RE_HpaII: HpaII restriction endonuclease; InterPro: IPR019062 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes HpaII, which recognises the double-stranded sequence CCGG and cleaves after C-1.
Probab=21.94 E-value=1.7e+02 Score=25.09 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=28.2
Q ss_pred HHHHcCCCcccccccCccceeeeEEEEECCCCcEEEEEEcc
Q psy1180 25 LAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 25 va~~yGv~~~~~~~~~G~~~~~RatFIIDpdG~Ir~~~~~~ 65 (140)
+|-++||......+ |..-...+..||+.||.|..-+.|.
T Consensus 273 ~a~alGM~p~k~w~--G~~~a~gGyivV~~dGevlcYHiy~ 311 (355)
T PF09561_consen 273 TAIALGMRPSKVWN--GKYDATGGYIVVKEDGEVLCYHIYN 311 (355)
T ss_pred HHHHcCCccCcccc--CcccccceEEEEeCCCCEEEEEehh
Confidence 56778998665543 3222358899999999998877765
No 189
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.16 E-value=1.1e+02 Score=20.53 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=13.3
Q ss_pred eeEEEEECCCCcEEEE
Q psy1180 46 VRAVYIIGPDRKLKLS 61 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~ 61 (140)
.|..++.||||.+..+
T Consensus 96 ~r~f~~~DPdGn~~~~ 111 (113)
T cd08356 96 GREFFLHDPSGVLWHI 111 (113)
T ss_pred cEEEEEECCCccEEEe
Confidence 3999999999987653
No 190
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=20.92 E-value=1.5e+02 Score=17.68 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=14.1
Q ss_pred CCceeEEE-cCccHHHHHcCCC
Q psy1180 12 DFPFAIIG-DENRDLAVKLDLL 32 (140)
Q Consensus 12 ~l~FPLls-D~~~~va~~yGv~ 32 (140)
++.|-.+- |.+.++++.||+.
T Consensus 30 ~i~~~~id~~~~~~l~~~~~i~ 51 (67)
T cd02973 30 NISAEMIDAAEFPDLADEYGVM 51 (67)
T ss_pred ceEEEEEEcccCHhHHHHcCCc
Confidence 46666663 3456788888875
No 191
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=20.75 E-value=1.4e+02 Score=21.60 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=16.5
Q ss_pred eeEEEEECCCCcEEEEEEcc
Q psy1180 46 VRAVYIIGPDRKLKLSIVYP 65 (140)
Q Consensus 46 ~RatFIIDpdG~Ir~~~~~~ 65 (140)
.|..|+-||||.+.....++
T Consensus 133 ~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 133 YRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred eEEEEEECCCCCEEEEEEcC
Confidence 48999999999998776543
No 192
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=20.71 E-value=91 Score=20.53 Aligned_cols=15 Identities=0% Similarity=0.197 Sum_probs=12.8
Q ss_pred EEEEECCCCcEEEEE
Q psy1180 48 AVYIIGPDRKLKLSI 62 (140)
Q Consensus 48 atFIIDpdG~Ir~~~ 62 (140)
++.++|.+++|++.-
T Consensus 11 ~i~~vD~~~~I~~~n 25 (106)
T PF13596_consen 11 GIIFVDRNLRIRYFN 25 (106)
T ss_dssp EEEEEETTSBEEEE-
T ss_pred CEEEEcCCCeEEEeC
Confidence 788999999999875
No 193
>PF03625 DUF302: Domain of unknown function DUF302 ; InterPro: IPR005180 This domain is found in an undescribed set of proteins. It normally occurs uniquely within a sequence, but is found as a tandem repeat (Q9X8B8 from SWISSPROT). It has an interesting phylogenetic distribution with the majority of examples in bacteria and archaea, but it is also found in Drosophila melanogaster (e.g. Q9VA18 from SWISSPROT). The hypothetical protein TT1751 from Thermus thermophilus has a beta-alpha-beta(4)-alpha structural fold [].; PDB: 1Q9U_A 1J3M_B.
Probab=20.65 E-value=1.6e+02 Score=18.08 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=17.8
Q ss_pred ccceeeeEEEEECCCCcEEEEEEc
Q psy1180 41 ETAITVRAVYIIGPDRKLKLSIVY 64 (140)
Q Consensus 41 G~~~~~RatFIIDpdG~Ir~~~~~ 64 (140)
|.-+|.|.++.-|.+|+++-...+
T Consensus 41 ~~~lPcrv~vye~~~G~~~v~~~~ 64 (65)
T PF03625_consen 41 GLFLPCRVLVYEDEDGKVWVSYMN 64 (65)
T ss_dssp GGC-SEEEEEEE-ETTEEEEEEE-
T ss_pred HHhCCeEEEEEEecCCeEEEEEeC
Confidence 666799999999999999877654
No 194
>PRK06769 hypothetical protein; Validated
Probab=20.25 E-value=92 Score=23.04 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=8.7
Q ss_pred EEEECCCCcEE
Q psy1180 49 VYIIGPDRKLK 59 (140)
Q Consensus 49 tFIIDpdG~Ir 59 (140)
..++|.||+|.
T Consensus 6 ~~~~d~d~~~~ 16 (173)
T PRK06769 6 AIFIDRDGTIG 16 (173)
T ss_pred EEEEeCCCccc
Confidence 45789999994
No 195
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.01 E-value=1.2e+02 Score=19.79 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=11.3
Q ss_pred eEEEEECCCCcEEE
Q psy1180 47 RAVYIIGPDRKLKL 60 (140)
Q Consensus 47 RatFIIDpdG~Ir~ 60 (140)
+..|+.||||.+..
T Consensus 110 ~~~~~~DPdG~~iE 123 (125)
T cd07241 110 YESVILDPEGNRIE 123 (125)
T ss_pred EEEEEECCCCCEEE
Confidence 66789999998754
Done!