RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1180
(140 letters)
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 185 bits (472), Expect = 9e-61
Identities = 68/140 (48%), Positives = 91/140 (65%), Gaps = 2/140 (1%)
Query: 1 DIKNYCLDIKG-DFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLK 59
DI Y + PF II D NR+LA+ L +LD K+ +T R V++ GPD+KLK
Sbjct: 85 DINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLK 144
Query: 60 LSIVYPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHPAVKDDELPKLFP 119
LSI+YPA+TGR+ DEILRV+ SLQL + V TP +WK GD VM+ P + ++E KLFP
Sbjct: 145 LSILYPATTGRNFDEILRVVISLQLTAEKR-VATPVDWKDGDSVMVLPTIPEEEAKKLFP 203
Query: 120 KGVDIVDMPSGVSYVRFTND 139
KGV ++PSG Y+R+T
Sbjct: 204 KGVFTKELPSGKKYLRYTPQ 223
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 183 bits (466), Expect = 6e-60
Identities = 60/138 (43%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Query: 1 DIKNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKL 60
DIK Y + I+ DE+R+LA KL ++DE+ K+ +T R ++ I P++K+K
Sbjct: 85 DIKYYGKL--NKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKA 142
Query: 61 SIVYPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHPAVKDDELPKLFPK 120
+++YPA+TGR+ EILRVL SLQL Y V TP NW GDK + P ++DDE+ K F
Sbjct: 143 TVLYPATTGRNAHEILRVLKSLQLTYTTP-VATPVNWNEGDKCCVIPTLQDDEISKHFKN 201
Query: 121 GVDIVDMPSGVSYVRFTN 138
+ V+MPS Y+RF N
Sbjct: 202 EITKVEMPSKKKYLRFVN 219
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 183 bits (467), Expect = 6e-60
Identities = 69/139 (49%), Positives = 97/139 (69%), Gaps = 3/139 (2%)
Query: 1 DIKNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKL 60
D+K +KGD P+ II DE R+LAVKL ++D + + + +T RAV+IIGPD+KLKL
Sbjct: 83 DVKCLS-GVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKL 141
Query: 61 SIVYPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHPAVKDDELPKLFPK 120
SI+YPA+TGR+ EILRV+DSLQL + V TPA+W+PGD+ M+ P V +E LFP
Sbjct: 142 SILYPATTGRNFSEILRVIDSLQLTAQKK-VATPADWQPGDRCMVVPGVSAEEAKTLFPN 200
Query: 121 GVDIVDMPSGVSYVRFTND 139
+++ +PSG Y+R+T
Sbjct: 201 -MEVKAVPSGKGYLRYTPQ 218
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 155 bits (395), Expect = 8e-49
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 27/157 (17%)
Query: 1 DIKNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKL 60
I+ + PF II D +A +L LL E+ + TVR V+I+ ++
Sbjct: 87 WIERHI---GVRIPFPIIADPQGTVARRLGLLHAESATH-----TVRGVFIVDARGVIRT 138
Query: 61 SIVYPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKP----GDKVMIHPAVKDDELPK 116
+ YP GR VDEILR++ +L+L PA+W G+ +++ P +D+
Sbjct: 139 MLYYPMELGRLVDEILRIVKALKLGDSLK-RAVPADWPNNEIIGEGLIVPPPTTEDQARA 197
Query: 117 LFPKG--------------VDIVDMPSGVSYVRFTND 139
G D+ Y+R +
Sbjct: 198 RMESGQYRSLDWWFCWDTPASRDDVEEARRYLRRAAE 234
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 81.9 bits (203), Expect = 1e-20
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G F ++ D + ++ D+L EE AI +R ++I + K++ +++ GR
Sbjct: 95 GQVSFPMVADITKSISRDYDVLFEE-------AIALRGAFLIDKNMKVRHAVINDLPLGR 147
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
+ DE+LR++D+L ++ + V PA W+ GDK M
Sbjct: 148 NADEMLRMVDALL-HFEEHGEVCPAGWRKGDKGM 180
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 82.3 bits (204), Expect = 1e-20
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G+ ++ D + ++ ++L ++ ++++RA +I + ++ +V + GR
Sbjct: 114 GNIKHTLLSDITKSISKDYNVLFDD-------SVSLRAFVLIDMNGIVQHLLVNNLAIGR 166
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
SVDEILR++D++Q ++ V PANW+ G M
Sbjct: 167 SVDEILRIIDAIQ-HHEKYGDVCPANWQKGKVSM 199
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 79.9 bits (198), Expect = 6e-20
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G+ +I D ++ +A D+L E ++ +RA +I ++ +V + GR
Sbjct: 93 GNIKHTLISDISKSIARSYDVLFNE-------SVALRAFVLIDKQGVVQHLLVNNLALGR 145
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
SVDEILR++D+LQ ++ V PANW+ G + M
Sbjct: 146 SVDEILRLIDALQ-HHEKYGDVCPANWQKGKESM 178
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 78.9 bits (195), Expect = 6e-19
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G ++ D ++ + E+ + T+R ++II L+ + GR
Sbjct: 153 GPIRIPLLSDLTHQISKDYGVYLED------SGHTLRGLFIIDDKGILRQITLNDLPVGR 206
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMI 105
SVDE LR++ + Q + + V PA WKPG + +I
Sbjct: 207 SVDETLRLVQAFQ-YTDKHGEVAPAGWKPGSETII 240
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 77.2 bits (191), Expect = 7e-19
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
+A+IGD L D + E+ + RA +++ P ++ V GR
Sbjct: 89 AKIKYAMIGDPTGALTRNFDNMRED------EGLADRATFVVDPQGIIQAIEVTAEGIGR 142
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
++LR + + Q + V PA WK G+ +
Sbjct: 143 DASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATL 176
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 78.1 bits (193), Expect = 8e-19
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G ++ D ++ + E+ T+R ++II L+ + GR
Sbjct: 139 GPMKIPLLSDLTHQISKDYGVYLED------QGHTLRGLFIIDEKGVLRQITMNDLPVGR 192
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMI 105
SVDE LR++ + Q + + V PA WKPG +I
Sbjct: 193 SVDETLRLVQAFQ-YTDKHGEVCPAGWKPGSDTII 226
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 76.4 bits (189), Expect = 1e-18
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G + +IGD ++ ++ + D+L+EE T + R +II PD ++ + GR
Sbjct: 90 GSIEYIMIGDPSQTISRQFDVLNEE------TGLADRGTFIIDPDGVIQAIEINADGIGR 143
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
++ + + Q +N V PA W+ G + +
Sbjct: 144 DASTLINKVKAAQYVRENPGEVCPAKWEEGGETL 177
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 76.5 bits (189), Expect = 2e-18
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G ++ D ++ + E+ + T+R ++II L+ + GR
Sbjct: 110 GPIRIPLLSDLTHQISKDYGVYLED------SGHTLRGLFIIDDKGILRQITLNDLPVGR 163
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
SVDE LR++ + Q + + V PA WKPG + +
Sbjct: 164 SVDETLRLVQAFQ-YTDKHGEVCPAGWKPGSETI 196
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 74.1 bits (183), Expect = 1e-17
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G ++ D+ + +A +LDE+ + + R V+II P+ KL+ I+ GR
Sbjct: 98 GPMAIPMLADKTKAIARAYGVLDED------SGVAYRGVFIIDPNGKLRQIIINDMPIGR 151
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
+V+E++R++++LQ F + + V PANWK GD
Sbjct: 152 NVEEVIRLVEALQ-FVEEHGEVCPANWKKGDAKK 184
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 74.6 bits (184), Expect = 1e-17
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G ++ D ++++ + DEE R ++II P+ L+ + GR
Sbjct: 131 GHMKIPLLADRKQEISKAYGVFDEE------DGNAFRGLFIIDPNGILRQITINDKPVGR 184
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
SVDE LR+LD+ Q F + + V P NWK G +
Sbjct: 185 SVDETLRLLDAFQ-FVEKHGEVCPVNWKRGQHGI 217
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 74.6 bits (184), Expect = 1e-17
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G+ F ++ D N+D++ ++L + + +R ++II + ++ V GR
Sbjct: 118 GNVEFTLVSDINKDISKNYNVLYDN-------SFALRGLFIIDKNGCVRHQTVNDLPIGR 170
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMI 105
+V E+LR +DS+ + V P NWK G K
Sbjct: 171 NVQEVLRTIDSII-HVDTSGEVCPINWKKGQKAFK 204
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 73.8 bits (182), Expect = 2e-17
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G ++ D N L+ +L EE + +R ++II P ++ + GR
Sbjct: 114 GPINIPLLADTNHSLSRDYGVLIEE------EGVALRGLFIIDPKGVIRHITINDLPVGR 167
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
+VDE LR++++ Q + N V P NW PG +
Sbjct: 168 NVDEALRLVEAFQ-WTDKNGTVLPCNWTPGAATI 200
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 72.6 bits (179), Expect = 5e-17
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G I+ D+ + + +L EE + R ++II P + L+ V GR
Sbjct: 98 GQMNIPILADKTKCIMKSYGVLKEE------DGVAYRGLFIIDPKQNLRQITVNDLPVGR 151
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
VDE LR++ + Q F + + V PANWKPGDK M
Sbjct: 152 DVDEALRLVKAFQ-FVEKHGEVCPANWKPGDKTM 184
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 72.3 bits (178), Expect = 6e-17
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
PF ++ D R+L+ +L+ + + R +I+ P+ +++ S GR
Sbjct: 104 KTLPFPMLSDIKRELSQAAGVLNAD-------GVADRVTFIVDPNNEIQFVSATAGSVGR 156
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
+VDE+LRVLD+LQ + + +NW+ GD +
Sbjct: 157 NVDEVLRVLDALQ-----SDELCASNWRKGDPTL 185
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 71.8 bits (177), Expect = 1e-16
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G ++ D R L+ +L + I R ++II L+ V GR
Sbjct: 96 GPLNIPLLADVTRRLSEDYGVLKTD------EGIAYRGLFIIDGKGVLRQITVNDLPVGR 149
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
SVDE LR++ + Q + + V PA WKPG +
Sbjct: 150 SVDEALRLVQAFQ-YTDEHGEVCPAGWKPGSDTI 182
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 71.9 bits (177), Expect = 1e-16
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G A++ D + ++ +L E + +R ++II P+ +K V GR
Sbjct: 118 GHMNIALLSDLTKQISRDYGVLLEG------PGLALRGLFIIDPNGVIKHLSVNDLPVGR 171
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVM 104
SV+E LR++ + Q F + + V+PANW P +
Sbjct: 172 SVEETLRLVKAFQ-FVEAHGEVSPANWTPESPTI 204
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 47.6 bits (114), Expect = 7e-08
Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 10 KGDFPFAIIGD--ENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPAS 67
+ F F ++ D + ++ + +E+ I R +++ ++ + +
Sbjct: 90 QSGFTFPLLSDFWPHGAVSQAYGVFNEQA------GIANRGTFVVDRSGIIRFAEMKQPG 143
Query: 68 TGRSVDEILRVLDSLQ 83
R L +L
Sbjct: 144 EVRDQRLWTDALAALT 159
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 38.8 bits (91), Expect = 1e-04
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIV-YPAST 68
+ F ++ D NR++ ++ E + RAV+I+ PD + V
Sbjct: 87 ENRLAFNLLSDYNREVIKLYNVYHE--DLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLN 144
Query: 69 GRSVDEILRVLDSLQ 83
DE++R + +
Sbjct: 145 EPDYDEVVREANKIA 159
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 35.3 bits (82), Expect = 0.002
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG 69
F I+ D NR++ K ++ E + RAV++I + K++ V T
Sbjct: 84 HNKLNFTILSDYNREVVKKYNVAWEF-PALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTK 142
Query: 70 RS-VDEILRVLDSL 82
DEI +V+ SL
Sbjct: 143 EPPYDEIEKVVKSL 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.005
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 19/95 (20%)
Query: 14 PFAI--IGDENRDLAVKLDLLDEENKNNLETAITV----------RAVY----IIGPDRK 57
P + I + RD D N + L T I R ++ + P
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 58 LK---LSIVYPASTGRSVDEILRVLDSLQLFYKNN 89
+ LS+++ V ++ L L K
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Score = 30.2 bits (67), Expect = 0.22
Identities = 19/161 (11%), Positives = 46/161 (28%), Gaps = 46/161 (28%)
Query: 2 IKNY-CLDIKGDFPFAIIGDENRDLAVK-----------LDLLDEENKNNLETAITVRAV 49
+ N+ C D++ D P +I+ E D + L + + ++ +
Sbjct: 30 VDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV----E 84
Query: 50 YIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNTVVTPAN------------- 96
++ + K +S + S+ + + + Y +N V N
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 97 ---WKPGDKVMIH------------PAVKDDELPKLFPKGV 122
+P V+I ++ +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 30.2 bits (68), Expect = 0.18
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 96 NWKPGDKVMIHPAVKDDELPKLFPKGV 122
WKPGD V++HPA D++ P G+
Sbjct: 130 RWKPGDHVIVHPAHVDEQEPATHGDGM 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.26
Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 17/121 (14%)
Query: 22 NRDL-AVKLDLLDEENKNNLETAITVRAVY----IIG-PDRKLKLSIVYPASTGRSVD-- 73
D+ A+ LL E + ++T ++ + P K S ++ A +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 74 -------EILRVLDSLQLFYKN-NTVVTPANWKPGDKVMIHPAVKDDELPKLFPKGVDIV 125
+ L+ Y+ + +V K + + + K+F +G++I+
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 126 D 126
+
Sbjct: 217 E 217
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 28.6 bits (64), Expect = 0.71
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 96 NWKPGDKVMIHPAVKDDELP 115
W+ GD+V+ H + E
Sbjct: 138 AWQAGDEVVAHCLSVELESS 157
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 27.7 bits (62), Expect = 1.6
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 54 PDRKLKLSIV-YPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHPAVKDD 112
PDR L++ I P+ + D + + L + ++
Sbjct: 273 PDRNLRVIICGGPSGPNATPDTYRHMAEELGV---------------EKRIRFLDPRPPS 317
Query: 113 ELPKLFPKGVDIVDMPS 129
EL ++ + DIV +PS
Sbjct: 318 ELVAVY-RAADIVAVPS 333
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 26.4 bits (59), Expect = 3.1
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 96 NWKPGDKVMIHPAVKDDELPK 116
+ PGD+V+I+P + +
Sbjct: 78 GFAPGDEVVINPGLSCGRCER 98
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 26.0 bits (58), Expect = 3.3
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG 69
K PF ++ D ++ + + R ++I ++ +
Sbjct: 83 KYKLPFILVSDPDKKIRELYGAK--------GFILPARITFVIDKKGIIRHIYNSQMNPA 134
Query: 70 RSVDEILRVLDSLQ 83
V+E L+ L ++
Sbjct: 135 NHVNEALKALKQIK 148
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_C
Length = 114
Score = 25.7 bits (56), Expect = 4.5
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHPAVKDDELPKLFPK 120
VDEIL L+ + K V ++K GDK I KL P
Sbjct: 67 KVDEILGPLNEVFFTIKCGDGVQATSFKEGDKFYIAAD-------KLLPI 109
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 26.1 bits (58), Expect = 4.6
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 100 GDKVMIHPAVKDDELPKLFPKGVDIVDMPS 129
V ++ ++ DI MP+
Sbjct: 252 SQNVKFLGRLEYQDMINTLAAA-DIFAMPA 280
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 25.8 bits (57), Expect = 4.8
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 48 AVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSL 82
Y++ P+ + ++ VD+I+ + S
Sbjct: 147 FFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 181
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 25.6 bits (57), Expect = 5.9
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 19/56 (33%)
Query: 30 DLLDEENKNNLETAITVR-----AVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80
DLL+ +NK NL VR Y+ LS + S ++I ++D
Sbjct: 156 DLLNPKNKGNLR----VREHPLLGPYVED------LSKLAV----TSYNDIQDLMD 197
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 47
Score = 24.2 bits (52), Expect = 6.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 111 DDELPKLFPKGVDIVDMPSG 130
D+EL +FP+G ++ P+G
Sbjct: 24 DEELDAMFPEGYKVLPPPAG 43
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 25.8 bits (57), Expect = 6.6
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 15/56 (26%)
Query: 30 DLLDEENKNNLETAITVR-----AVYIIGPDRKLKLSIVYPASTGRSVDEILRVLD 80
DLL N + VR Y+ L+ V R ++EI+R +
Sbjct: 203 DLLAPVVPNKPPYYLKVRESPTEGPYVKD------LTEVPV----RGLEEIIRWMR 248
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 25.5 bits (54), Expect = 9.1
Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 13/125 (10%)
Query: 20 DENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVL 79
++ + + + D K V G + I + S V+
Sbjct: 47 GDSTPKQLDIFVHDFPRKQKTLFQTRVDMNPAGGMLVTPTIEIPAKEVSTDSRQNQYVVV 106
Query: 80 DSLQLFYKNNTVVTPAN-------------WKPGDKVMIHPAVKDDELPKLFPKGVDIVD 126
+ VV + + PG V+ D K+ +
Sbjct: 107 QVTGPQVRLEKVVLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNTSKMNKTVIVEFQ 166
Query: 127 MPSGV 131
P G+
Sbjct: 167 TPEGI 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.141 0.412
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,225,750
Number of extensions: 129554
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 55
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)