RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1180
(140 letters)
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 127 bits (321), Expect = 1e-38
Identities = 65/137 (47%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
Query: 3 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 62
+ PF II D NR+LA+ L +LD K+ +T R V++ GPD+KLKLSI
Sbjct: 84 AYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSI 143
Query: 63 VYPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHPAVKDDELPKLFPKGV 122
+YPA+TGR+ DEILRV+ SLQL + V TP +WK GD VM+ P + ++E KLFPKGV
Sbjct: 144 LYPATTGRNFDEILRVVISLQLTAEKR-VATPVDWKDGDSVMVLPTIPEEEAKKLFPKGV 202
Query: 123 DIVDMPSGVSYVRFTND 139
++PSG Y+R+T
Sbjct: 203 FTKELPSGKKYLRYTPQ 219
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 125 bits (314), Expect = 2e-37
Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 3 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 62
+ I+ DE+R+LA KL ++DE+ K+ +T R ++ I P++K+K ++
Sbjct: 84 DIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 143
Query: 63 VYPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHPAVKDDELPKLFPKGV 122
+YPA+TGR+ EILRVL SLQL Y V TP NW GDK + P ++DDE+ K F +
Sbjct: 144 LYPATTGRNAHEILRVLKSLQLTYTTP-VATPVNWNEGDKCCVIPTLQDDEISKHFKNEI 202
Query: 123 DIVDMPSGVSYVRFTN 138
V+MPS Y+RF N
Sbjct: 203 TKVEMPSKKKYLRFVN 218
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId:
56636]}
Length = 237
Score = 95.7 bits (237), Expect = 7e-26
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 24/155 (15%)
Query: 3 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 62
+ I PF II D +A +L LL E TVR V+I+ ++ +
Sbjct: 82 EWIERHIGVRIPFPIIADPQGTVARRLGLLHAE-----SATHTVRGVFIVDARGVIRTML 136
Query: 63 VYPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKP----GDKVMIHPAVKDDELPKLF 118
YP GR VDEILR++ +L+L PA+W G+ +++ P +D+
Sbjct: 137 YYPMELGRLVDEILRIVKALKLGDSLK-RAVPADWPNNEIIGEGLIVPPPTTEDQARARM 195
Query: 119 PKG--------------VDIVDMPSGVSYVRFTND 139
G D+ Y+R +
Sbjct: 196 ESGQYRSLDWWFCWDTPASRDDVEEARRYLRRAAE 230
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 88.7 bits (219), Expect = 1e-23
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG 69
G I+ D+ + + +L EE+ + R ++II P + L+ V G
Sbjct: 94 LGQMNIPILADKTKCIMKSYGVLKEEDG------VAYRGLFIIDPKQNLRQITVNDLPVG 147
Query: 70 RSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMI 105
R VDE LR++ + Q K+ V PANWKPGDK M
Sbjct: 148 RDVDEALRLVKAFQFVEKHG-EVCPANWKPGDKTMK 182
>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 197
Score = 82.5 bits (203), Expect = 4e-21
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
G ++ D R L+ +L + I R ++II L+ V GR
Sbjct: 96 GPLNIPLLADVTRRLSEDYGVLKTDEG------IAYRGLFIIDGKGVLRQITVNDLPVGR 149
Query: 71 SVDEILRVLDSLQLFYKNNTVVTPANWKPGDKVMIHPAVKDDELPKLFPK 120
SVDE LR++ + Q ++ V PA WKPG + P V D + + F K
Sbjct: 150 SVDEALRLVQAFQYTDEHG-EVCPAGWKPGSDTIK-PNVDDSK--EYFSK 195
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii
[TaxId: 5861]}
Length = 170
Score = 69.9 bits (170), Expect = 1e-16
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 12 DFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRS 71
+ +I D ++ +A D+L E+ + +RA +I ++ +V + GRS
Sbjct: 90 NIKHTLISDISKSIARSYDVLFNES-------VALRAFVLIDKQGVVQHLLVNNLALGRS 142
Query: 72 VDEILRVLDSLQLFYKNNTVVTPANWKPG 100
VDEILR++D+LQ K V PANW+ G
Sbjct: 143 VDEILRLIDALQHHEKYG-DVCPANWQKG 170
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
{Salmonella typhimurium [TaxId: 90371]}
Length = 186
Score = 70.2 bits (171), Expect = 2e-16
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 20 DENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVL 79
D L D + E+ RA +++ P ++ V GR ++LR +
Sbjct: 98 DPTGALTRNFDNMREDEGL------ADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 151
Query: 80 DSLQLFYKNNTVVTPANWKPGDKVMI 105
+ Q + V PA WK G+ +
Sbjct: 152 KAAQYVAAHPGEVCPAKWKEGEATLA 177
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
{Helicobacter pylori [TaxId: 210]}
Length = 170
Score = 67.2 bits (163), Expect = 1e-15
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 4 NYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIV 63
G F ++ D + ++ D+L EE I +R ++I + K++ +++
Sbjct: 88 PVEKGGIGQVSFPMVADITKSISRDYDVLFEEA-------IALRGAFLIDKNMKVRHAVI 140
Query: 64 YPASTGRSVDEILRVLDSLQLFYKNNTVVTP 94
GR+ DE+LR++D+L F ++ V P
Sbjct: 141 NDLPLGRNADEMLRMVDALLHFEEHG-EVCP 170
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Crithidia fasciculata [TaxId:
5656]}
Length = 167
Score = 62.2 bits (150), Expect = 1e-13
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 12 DFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGRS 71
++ D+ + +A +LDE++ R V+II P+ KL+ I+ GR+
Sbjct: 96 PMAIPMLADKTKAIARAYGVLDEDSGV------AYRGVFIIDPNGKLRQIIINDMPIGRN 149
Query: 72 VDEILRVLDSLQLFYKN 88
V+E++R++++LQ ++
Sbjct: 150 VEEVIRLVEALQFVEEH 166
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC
{Amphibacillus xylanus [TaxId: 1449]}
Length = 166
Score = 59.1 bits (142), Expect = 2e-12
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG 69
G + +IGD ++ ++ + D+L+EE + R +II PD ++ + G
Sbjct: 89 VGSIEYIMIGDPSQTISRQFDVLNEETG------LADRGTFIIDPDGVIQAIEINADGIG 142
Query: 70 RSVDEILRVLDSLQLFYKN 88
R ++ + + Q +N
Sbjct: 143 RDASTLINKVKAAQYVREN 161
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 57.9 bits (139), Expect = 4e-12
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 10 KGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTG 69
G A++ D + ++ + +R ++II P+ +K V G
Sbjct: 87 LGHMNIALLSDLTKQISRDY------GVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVG 140
Query: 70 RSVDEILRVLDSLQLF 85
RSV+E LR++ + Q
Sbjct: 141 RSVEETLRLVKAFQFV 156
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 53.9 bits (128), Expect = 2e-10
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
PF ++ D R+L+ +L+ + + R +I+ P+ +++ S GR
Sbjct: 103 KTLPFPMLSDIKRELSQAAGVLNADGVAD-------RVTFIVDPNNEIQFVSATAGSVGR 155
Query: 71 SVDEILRVLDSLQ 83
+VDE+LRVLD+LQ
Sbjct: 156 NVDEVLRVLDALQ 168
>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 43.8 bits (102), Expect = 7e-07
Identities = 12/81 (14%), Positives = 30/81 (37%)
Query: 2 IKNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLS 61
+ K + ++ D + DLL +++ ++ ++ ++ D +K
Sbjct: 81 TGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL 140
Query: 62 IVYPASTGRSVDEILRVLDSL 82
V P TG + ++ L
Sbjct: 141 NVEPDGTGLTCSLAPNIISQL 161
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 153
Score = 40.1 bits (92), Expect = 2e-05
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 47 RAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQ 83
R +++ ++ + + R L +L
Sbjct: 116 RGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 152
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 163
Score = 39.9 bits (92), Expect = 2e-05
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 3 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 62
K +C D + + LL E + RAV+++ D ++
Sbjct: 89 KRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWH------LLARAVFVLDTDNTIRYVE 142
Query: 63 VYP-ASTGRSVDEILRVLDSL 82
++ + + + +L
Sbjct: 143 YVDNINSEPNFEAAIAAAKAL 163
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 160
Score = 37.7 bits (86), Expect = 1e-04
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 11 GDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSIVYPASTGR 70
F ++ D NR++ ++ E+ K + RAV+I+ PD + V
Sbjct: 85 NRLAFNLLSDYNREVIKLYNVYHEDLKG--LKMVAKRAVFIVKPDGTVAYKWVTDNPLNE 142
Query: 71 -SVDEILRVLDSLQ 83
DE++R + +
Sbjct: 143 PDYDEVVREANKIA 156
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 32.9 bits (74), Expect = 0.006
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 3 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLS- 61
+C + + N + + + + RAV +I + + S
Sbjct: 91 SRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGP---LKGLAARAVVVIDENDNVIFSQ 147
Query: 62 IVYPASTGRSVDEILRV 78
+V +T + L V
Sbjct: 148 LVDEITTEPDYEAALAV 164
>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 166
Score = 31.4 bits (70), Expect = 0.021
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 44 ITVRAVYIIGPDRKLKLSIVYP-ASTGRSVDEILRVLDSL 82
+ RA+ +IG D + + + P + + + L L +
Sbjct: 126 LLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGAT 165
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae
[TaxId: 727]}
Length = 164
Score = 30.6 bits (68), Expect = 0.040
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 3 KNYCLDIKGDFPFAIIGDENRDLAVKLDLLDEENKNNLETAITVRAVYIIGPDRKLKLSI 62
+C + + N L +L + + +T RAV ++ + S
Sbjct: 89 ARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGP---LAGLTSRAVIVLDEQNNVLHSQ 145
Query: 63 VYPASTGR-SVDEILRVL 79
+ + + L VL
Sbjct: 146 LVEEIKEEPNYEAALAVL 163
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 30.3 bits (67), Expect = 0.041
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 41 ETAITVRAVYIIGPDRKLKLSI--VYPA-STGRSVDEILRVLDSLQ 83
+ ++R+ +I D KLK + P S + E+L V + +
Sbjct: 111 PLSGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK 155
>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD
{Escherichia coli [TaxId: 562]}
Length = 281
Score = 24.5 bits (52), Expect = 5.0
Identities = 13/76 (17%), Positives = 17/76 (22%), Gaps = 6/76 (7%)
Query: 44 ITVRAVYIIGPDRKLKLSIVYPASTGRSVDEILRVLDSLQLFYKNNTVVTPANWKPGDKV 103
VR + G S E +L L W+P D
Sbjct: 186 PVVRTHPVSGKQALFVNEGFTTRIVDVSEKESEALLSFLFAHITKPEFQVRWRWQPNDIA 245
Query: 104 M------IHPAVKDDE 113
+ H A D
Sbjct: 246 IWDNRVTQHYANADYL 261
>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436
{Thermotoga maritima [TaxId: 2336]}
Length = 184
Score = 24.4 bits (52), Expect = 5.5
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 95 ANWKPGDKVMIHP 107
+ KV+++P
Sbjct: 171 MESREALKVILYP 183
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy
grass (Phleum pratense) [TaxId: 15957]}
Length = 95
Score = 23.1 bits (50), Expect = 7.7
Identities = 4/9 (44%), Positives = 4/9 (44%)
Query: 92 VTPANWKPG 100
V P WK
Sbjct: 82 VIPEGWKAD 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.141 0.412
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 541,378
Number of extensions: 24327
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 29
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.9 bits)