BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11800
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDEC-YENPLICLNGRCDNT 180
DEC + +C +G CIN DGS++C+C G++L+ G+ C+D DEC NP C NG C N
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSVGNP--CGNGTCKNV 61
Query: 181 LGSYRCACQPGYSPSP 196
+G + C C+ G+ P P
Sbjct: 62 IGGFECTCEEGFEPGP 77
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 47/104 (45%), Gaps = 30/104 (28%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXX 110
++DEC E P +C +G+C NT GSYRC C GY + G CVD
Sbjct: 4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYILA--GNECVDT---------------- 44
Query: 111 XXXXXXXXLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSP 154
DECS C NG C N+ G F+C C+ GF P
Sbjct: 45 -----------DECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP 77
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 160 IDVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRT 209
+D+DEC E P +C +G+C NT GSYRC C GY + G CVD DEC
Sbjct: 3 VDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSV 49
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 122 DECSQN-GMCANGMCINMDGSFKCQC----KPGFVLSPTGHACIDVDECYENPLICLNGR 176
DEC + +C G C+N G F+C+C + GF++ C+D+DEC +PL+C G
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKN---CMDIDECQRDPLLCRGGV 60
Query: 177 CDNTLGSYRCACQPGYSPSPDGGFCV 202
C NT GSYRC C PG+ SP+ C+
Sbjct: 61 CHNTEGSYRCECPPGHQLSPNISACI 86
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 37/116 (31%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGF-----CVDRDEC-RTPGDHD 104
++DEC +P +C G+C NT G + C C GY + GF C+D DEC R P
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGY----ESGFMMMKNCMDIDECQRDP---- 53
Query: 105 ECSQXXXXXXXXXXLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACI 160
+C G+C N +GS++C+C PG LSP ACI
Sbjct: 54 -----------------------LLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGF-----CVDRDECR 208
D+DEC +P +C G+C NT G + C C GY + GF C+D DEC+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGY----ESGFMMMKNCMDIDECQ 50
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRD------ECRTPGDHD 104
+V+EC + P C++G C NT GSY C C P + +P CVD + R GD+
Sbjct: 2 DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 105 E--CSQXXXXXXXXXXLYHDECSQNGMCANGMCINMDGS---FKCQCKPGFVLSPTGHAC 159
+ CS G MC ++ S C GF +P
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCE-MCPAVNTSEYKILCPGGEGFRPNPITVIL 119
Query: 160 IDVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFC 201
D+DEC E P +C G+C NT GS++C C GY + D C
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVD 203
DV+EC + P C++G C NT GSY C C P + +P CVD
Sbjct: 2 DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRD------ECRTPGDHD 104
+V+EC + P C++G C NT GSY C C P + +P CVD + R GD+
Sbjct: 2 DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 105 E--CSQXXXXXXXXXXLYHDECSQNGM-CANGMCINM-DGSFKCQCKPGFVLSPTGHACI 160
+ CS G C +N + C GF +P
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFC 201
D+DEC E P +C G+C NT GS++C C GY + D C
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVD 203
DV+EC + P C++G C NT GSY C C P + +P CVD
Sbjct: 2 DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 13/80 (16%)
Query: 133 GMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLN-GRCDNTLGSYRCACQP 190
G CIN GSF+CQC G+ TG C IDV+EC NP C N C + +G ++C C P
Sbjct: 19 GKCINTLGSFECQCLQGY----TGPRCEIDVNECVSNP--CQNDATCLDQIGEFQCICMP 72
Query: 191 GYSPSPDGGFC-VDRDECRT 209
GY +G C V+ DEC +
Sbjct: 73 GY----EGVHCEVNTDECAS 88
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 39/146 (26%)
Query: 51 NVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC-VDRDECRT-PGDHDECS 107
+VDEC C + G+C NTLGS+ C C GY+ G C +D +EC + P +D
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNPCQND--- 56
Query: 108 QXXXXXXXXXXLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYE 167
C++ G F+C C PG+ H ++ DEC
Sbjct: 57 -------------------------ATCLDQIGEFQCICMPGY---EGVHCEVNTDECAS 88
Query: 168 NPLICLNGRCDNTLGSYRCACQPGYS 193
+P + NGRC + + ++C C G++
Sbjct: 89 SPCL-HNGRCLDKINEFQCECPTGFT 113
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 127 NGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGSYRC 186
NG CA C + G+ +C C G+ L+ G C DV+EC E C G C N+ G+++C
Sbjct: 10 NGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGY-CSQG-CTNSEGAFQC 66
Query: 187 ACQPGYSPSPDGGFC 201
C+ GY PD C
Sbjct: 67 WCEAGYELRPDRRSC 81
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 31/113 (27%)
Query: 66 RCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXXXXXXXXXXLYHDECS 125
+C G+ +C C GY + DG C D +EC+
Sbjct: 16 KCQMIRGAVQCTCHTGYRLTEDGRTCQDV---------------------------NECA 48
Query: 126 QNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCD 178
+ G C+ G C N +G+F+C C+ G+ L P +C + P++ R D
Sbjct: 49 EEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALG---PEPVLLFANRID 97
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 176 RCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPG 211
+C G+ +C C GY + DG C D +EC G
Sbjct: 16 KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEG 51
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 39/147 (26%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVD-------------RDEC 97
++DEC +P C+NG C N+ GS+ C C + P C++ R E
Sbjct: 3 DIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 98 RTPGDHDE---CSQXXXXXXXXXXLYH--------------------DECSQN-GMCANG 133
G + CS L DEC G+C NG
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNG 120
Query: 134 MCINMDGSFKCQCKPGFVLSPTGHACI 160
+C+N GSFKCQC G L TG C+
Sbjct: 121 LCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDE--CYENPLICLNGRCD 178
DEC ++ C NG+C N GSF C+C L PT CI+ + C++ ++GRC+
Sbjct: 5 DEC-ESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTV---IDGRCE 59
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 13/80 (16%)
Query: 133 GMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLN-GRCDNTLGSYRCACQP 190
G CIN GSF+CQC G+ TG C IDV+EC NP C N C + +G ++C C P
Sbjct: 17 GKCINTLGSFECQCLQGY----TGPRCEIDVNECVSNP--CQNDATCLDQIGEFQCICMP 70
Query: 191 GYSPSPDGGFC-VDRDECRT 209
GY +G C V+ DEC +
Sbjct: 71 GY----EGVHCEVNTDECAS 86
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 39/146 (26%)
Query: 51 NVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC-VDRDECRT-PGDHDECS 107
+VDEC C + G+C NTLGS+ C C GY+ G C +D +EC + P +D
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNPCQND--- 54
Query: 108 QXXXXXXXXXXLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYE 167
C++ G F+C C PG+ H ++ DEC
Sbjct: 55 -------------------------ATCLDQIGEFQCICMPGY---EGVHCEVNTDECAS 86
Query: 168 NPLICLNGRCDNTLGSYRCACQPGYS 193
+P + NGRC + + ++C C G++
Sbjct: 87 SPCL-HNGRCLDKINEFQCECPTGFT 111
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 135 CINMDGSFKCQCKPGF--------VLSPTGHACIDVDECYENPLICLNGR-CDNTLGSYR 185
C N +GS+ C C PG+ + + + C DVDEC C + C NT+GSY
Sbjct: 61 CWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYS 120
Query: 186 CACQPGYSP 194
C C+PG+ P
Sbjct: 121 CRCRPGWKP 129
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXXXXXXXXXXLYHDECSQ 126
C NT GSY C C PGY P + E T D DECS Q
Sbjct: 61 CWNTEGSYDCVCSPGYEPVSGAKTFKNESE-NTCQDVDECSS----------------GQ 103
Query: 127 NGMCANGMCINMDGSFKCQCKPGF 150
+ ++ +C N GS+ C+C+PG+
Sbjct: 104 HQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 51 NVDECYENPLICLNGR-CDNTLGSYRCACQPGYSP 84
+VDEC C + C NT+GSY C C+PG+ P
Sbjct: 95 DVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP 129
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 122 DECS-QNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNT 180
DECS + +C +C N+ G F+C+C G+ + +C D+DEC EN L C N
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCAQL---CVNY 60
Query: 181 LGSYRCAC--QPGYSPSPDGGFC 201
G Y C C + G+ + D C
Sbjct: 61 PGGYTCYCDGKKGFKLAQDQKSC 83
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 31/111 (27%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXX 110
+VDEC P IC C N G + C C GY + C D
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCED----------------- 44
Query: 111 XXXXXXXXLYHDECSQNGMCANGMCINMDGSFKCQC--KPGFVLSPTGHAC 159
DECS+N MCA +C+N G + C C K GF L+ +C
Sbjct: 45 ----------IDECSEN-MCAQ-LCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 22/47 (46%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
DVDEC P IC C N G + C C GY + C D DEC
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC 48
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 29/93 (31%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXXXXXXXXXXLYHDECSQ 126
C++ Y C C G+ C D DEC+ P D CSQ
Sbjct: 14 CNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDP---------------------DTCSQ 51
Query: 127 NGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC 159
+C+N++G +KCQC+ GF L P AC
Sbjct: 52 -------LCVNLEGGYKCQCEEGFQLDPHTKAC 77
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 57
Query: 182 GSYRCACQPGYSPSPDGGFC 201
G Y+C C+ G+ P C
Sbjct: 58 GGYKCQCEEGFQLDPHTKAC 77
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 35/113 (30%)
Query: 52 VDECYENPLICLNGRC-----DNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDEC 106
+ EC N + NG C D +G Y C C G+ C D DEC+ P
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIG-YECLCPDGFQLVAQRR-CEDIDECQDP------ 86
Query: 107 SQXXXXXXXXXXLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC 159
D CSQ +C+N++G +KCQC+ GF L P AC
Sbjct: 87 ---------------DTCSQ-------LCVNLEGGYKCQCEEGFQLDPHTKAC 117
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 97
Query: 182 GSYRCACQPGYSPSPDGGFC 201
G Y+C C+ G+ P C
Sbjct: 98 GGYKCQCEEGFQLDPHTKAC 117
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 35/116 (30%)
Query: 52 VDECYENPLICLNGRC-----DNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDEC 106
+ EC N + NG C D +G Y C C G+ C D DEC+ P
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIG-YECLCPDGFQLVAQRR-CEDIDECQDP------ 358
Query: 107 SQXXXXXXXXXXLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDV 162
D CSQ +C+N++G +KCQC+ GF L P AC V
Sbjct: 359 ---------------DTCSQ-------LCVNLEGGYKCQCEEGFQLDPHTKACKAV 392
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 369
Query: 182 GSYRCACQPGYSPSPDGGFC 201
G Y+C C+ G+ P C
Sbjct: 370 GGYKCQCEEGFQLDPHTKAC 389
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 35/116 (30%)
Query: 52 VDECYENPLICLNGRC-----DNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDEC 106
+ EC N + NG C D +G Y C C G+ C D DEC+ P
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIG-YECLCPDGFQLVAQRR-CEDIDECQDP------ 340
Query: 107 SQXXXXXXXXXXLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDV 162
D CSQ +C+N++G +KCQC+ GF L P AC V
Sbjct: 341 ---------------DTCSQ-------LCVNLEGGYKCQCEEGFQLDPHTKACKAV 374
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 351
Query: 182 GSYRCACQPGYSPSPDGGFC 201
G Y+C C+ G+ P C
Sbjct: 352 GGYKCQCEEGFQLDPHTKAC 371
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 29/96 (30%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXXXXXXXXXXLYHDECSQ 126
C++ Y C C G+ C D DEC+ P D CSQ
Sbjct: 16 CNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDP---------------------DTCSQ 53
Query: 127 NGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDV 162
+C+N++G +KCQC+ GF L P AC V
Sbjct: 54 -------LCVNLEGGYKCQCEEGFQLDPHTKACKAV 82
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 59
Query: 182 GSYRCACQPGYSPSPDGGFC 201
G Y+C C+ G+ P C
Sbjct: 60 GGYKCQCEEGFQLDPHTKAC 79
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 29/93 (31%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXXXXXXXXXXLYHDECSQ 126
C++ Y C C G+ C D DEC+ P D CSQ
Sbjct: 43 CNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDP---------------------DTCSQ 80
Query: 127 NGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC 159
+C+N++G +KCQC+ GF L P AC
Sbjct: 81 -------LCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 86
Query: 182 GSYRCACQPGYSPSPDGGFC 201
G Y+C C+ G+ P C
Sbjct: 87 GGYKCQCEEGFQLDPHTKAC 106
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 29/93 (31%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXXXXXXXXXXLYHDECSQ 126
C++ Y C C G+ C D DEC+ P D CSQ
Sbjct: 43 CNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDP---------------------DTCSQ 80
Query: 127 NGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC 159
+C+N++G +KCQC+ GF L P AC
Sbjct: 81 -------LCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 86
Query: 182 GSYRCACQPGYSPSPDGGFC 201
G Y+C C+ G+ P C
Sbjct: 87 GGYKCQCEEGFQLDPHTKAC 106
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 30/108 (27%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXXX 111
+EC +N C + C++ Y C C G+ C D DEC+ P
Sbjct: 5 TNECLDNNGGCSH-VCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDP----------- 51
Query: 112 XXXXXXXLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC 159
D CSQ +C+N++G +KCQC+ GF L P AC
Sbjct: 52 ----------DTCSQ-------LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 62
Query: 182 GSYRCACQPGYSPSP 196
G Y+C C+ G+ P
Sbjct: 63 GGYKCQCEEGFQLDP 77
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 29/93 (31%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXXXXXXXXXXLYHDECSQ 126
C++ Y C C G+ C D DEC+ P D CSQ
Sbjct: 19 CNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDP---------------------DTCSQ 56
Query: 127 NGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC 159
+C+N++G +KCQC+ GF L P AC
Sbjct: 57 -------LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 62
Query: 182 GSYRCACQPGYSPSP 196
G Y+C C+ G+ P
Sbjct: 63 GGYKCQCEEGFQLDP 77
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 29/93 (31%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQXXXXXXXXXXLYHDECSQ 126
C++ Y C C G+ C D DEC+ P D CSQ
Sbjct: 16 CNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDP---------------------DTCSQ 53
Query: 127 NGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC 159
+C+N++G +KCQC+ GF L P AC
Sbjct: 54 -------LCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC N + +C ++ ++C C GF L C D+DEC ++P C + C N
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDEC-QDPDTC-SQLCVNLE 59
Query: 182 GSYRCACQPGYSPSPDGGFC 201
G Y+C C+ G+ P C
Sbjct: 60 GGYKCQCEEGFQLDPHTKAC 79
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCD 178
+EC++ G C+ G C N +G+F+C C+ G+ L P +C + P++ R D
Sbjct: 2 NECAEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALG---PEPVLLFANRID 54
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFC 91
V+EC E C G C N+ G+++C C+ GY PD C
Sbjct: 1 VNECAEEGY-CSQG-CTNSEGAFQCWCEAGYELRPDRRSC 38
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 162 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFC 201
V+EC E C G C N+ G+++C C+ GY PD C
Sbjct: 1 VNECAEEGY-CSQG-CTNSEGAFQCWCEAGYELRPDRRSC 38
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 21/83 (25%)
Query: 129 MCANGMCINMDGSFKCQCKPGFV--------------LSPTGHACIDVDECYENPLICLN 174
+C NG + M FKC C G V G AC + +C ENP
Sbjct: 12 ICKNGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPD---- 67
Query: 175 GRCDNTLGSYRCACQPGYSPSPD 197
+ Y+C C GY+ D
Sbjct: 68 ---PAQVNMYKCGCIEGYTLKED 87
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 132 NGMCINMDGSFKCQCKPGFVLSPTGHACI 160
N +C N++G +KCQC GF + C+
Sbjct: 150 NEVCKNVEGVYKCQCMEGFTFDKEKNVCL 178
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 143 KCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGSYRCACQP 190
C+C G++L G C D+DEC EN C +G C N G++ C C P
Sbjct: 62 SCECPEGYILD-DGFICTDIDEC-ENGGFC-SGVCHNLPGTFECICGP 106
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 73 SYRCACQPGYSPSPDGG-----FCVDRDECRTPGDHD-------ECSQXXXXXXXXXXLY 120
SY C C G++P P FC ++ P D D EC +
Sbjct: 23 SYLCVCAEGFAPIPHEPHRCQLFC---NQTACPADCDPNTQASCECPEGYILDDGFICTD 79
Query: 121 HDECSQNGMCANGMCINMDGSFKCQCKPGFVLS 153
DEC G C+ G+C N+ G+F+C C P L+
Sbjct: 80 IDECENGGFCS-GVCHNLPGTFECICGPDSALA 111
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 143 KCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGSYRCACQP 190
C+C G++L G C D+DEC EN C +G C N G++ C C P
Sbjct: 62 SCECPEGYILD-DGFICTDIDEC-ENGGFC-SGVCHNLPGTFECICGP 106
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 73 SYRCACQPGYSPSPD-----GGFCVDRDECRTPGDHD-------ECSQXXXXXXXXXXLY 120
SY C C G++P P FC ++ P D D EC +
Sbjct: 23 SYLCVCAEGFAPIPHEPHRCQMFC---NQTACPADCDPNTQASCECPEGYILDDGFICTD 79
Query: 121 HDECSQNGMCANGMCINMDGSFKCQCKPGFVLS 153
DEC G C+ G+C N+ G+F+C C P L+
Sbjct: 80 IDECENGGFCS-GVCHNLPGTFECICGPDSALA 111
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 130 CANGMCINMDGSFKCQCKPGFVLSPTGHAC---IDVDECYENPLICLNGRCDNTLGSYRC 186
C +G CI+ GSF C C+ G+ G C + C + C + C +G RC
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGW----EGRFCQREVSFLNCSLDNGGCTH-YCLEEVGWRRC 70
Query: 187 ACQPGYSPSPD 197
+C PGY D
Sbjct: 71 SCAPGYKLGDD 81
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 130 CANGMCINMDGSFKCQCKPGFVLSPTGHAC---IDVDECYENPLICLNGRCDNTLGSYRC 186
C +G CI GSF C C+ G+ G C + C + C + C +G RC
Sbjct: 23 CGHGTCIXGIGSFSCDCRSGW----EGRFCQREVSFLNCSLDNGGCTH-YCLEEVGWRRC 77
Query: 187 ACQPGYSPSPD 197
+C PGY D
Sbjct: 78 SCAPGYKLGDD 88
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 157 HACIDVDEC--YENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
+ +DVDEC E+ + + C N +G Y C+C+ GY D C R EC
Sbjct: 116 YMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC--RVEC 166
>pdb|1Z1Y|A Chain A, Crystal Structure Of Methylated Pvs25, An Ookinete Protein
From Plasmodium Vivax
pdb|1Z1Y|B Chain B, Crystal Structure Of Methylated Pvs25, An Ookinete Protein
From Plasmodium Vivax
Length = 186
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 21/83 (25%)
Query: 129 MCANGMCINMDGSFKCQCKPGFV--------------LSPTGHACIDVDECYENPLICLN 174
+C NG + M F C C G V G AC + +C ENP
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPD---- 67
Query: 175 GRCDNTLGSYRCACQPGYSPSPD 197
+ Y C C GY+ D
Sbjct: 68 ---PAQVNMYXCGCIEGYTLXED 87
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 132 NGMCINMDGSFKCQCKPGFVLSPTGHACI 160
N +C N++G + CQC GF + C+
Sbjct: 150 NEVCXNVEGVYXCQCMEGFTFDXEXNVCL 178
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 157 HACIDVDECYE--NPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
+ +DVDEC E + + + C N +G Y C+C+ GY D C R EC
Sbjct: 116 YMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC--RVEC 166
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 160 IDVDEC-------YENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFC 201
+D+DEC E+P C N +G Y C+C+PGY D C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 134 MCINMDGSFKCQCKPGFVLSPTGHAC 159
+C N G + C C+PG+ L H+C
Sbjct: 25 LCHNYVGGYFCSCRPGYELQEDRHSC 50
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 161 DVDECYENPLICLN-GRCDNTLGSYRCACQPGYS 193
DV+EC NP C N C + +G ++C C PGY
Sbjct: 1 DVNECISNP--CQNDATCLDQIGEFQCICMPGYE 32
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 51 NVDECYENPLICLN-GRCDNTLGSYRCACQPGYS 83
+V+EC NP C N C + +G ++C C PGY
Sbjct: 1 DVNECISNP--CQNDATCLDQIGEFQCICMPGYE 32
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 132 NGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLNGRCDNTLGSYRCACQP 190
NG C + + C C PG+ G C + +EC+ C SY C+C
Sbjct: 16 NGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQ 71
Query: 191 GYSPSPDGGFCVDRDEC 207
GY D CV D+C
Sbjct: 72 GYRLGEDHKQCVPHDQC 88
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 31/103 (30%)
Query: 64 NGRCDNTLGSYRCACQPGYSPSPDGGFC-VDRDECRTPGDHDECSQXXXXXXXXXXLYHD 122
NG C +++ Y C C PGY +G C + ++EC P D C
Sbjct: 16 NGSCQDSIWGYTCTCSPGY----EGSNCELAKNECH-PERTDGCQH-------------- 56
Query: 123 ECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDEC 165
C+ S+ C C G+ L C+ D+C
Sbjct: 57 -----------FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 88
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 124 CSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICL-NGRCDN--- 179
C G C +G+ G + C C GF G C E + L L NG CD
Sbjct: 50 CQNQGKCKDGL-----GEYTCTCLEGF----EGKNC----ELFTRKLCSLDNGDCDQFCH 96
Query: 180 -TLGSYRCACQPGYSPSPDGGFCV 202
S C+C GY+ + +G C+
Sbjct: 97 EEQNSVVCSCARGYTLADNGKACI 120
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 53 DECYENPLICLNG-RCDNTLGSYRCACQPGYS 83
D+C NP CLNG C + + SY C CQ G+
Sbjct: 49 DQCEPNP--CLNGGLCKDDINSYECWCQVGFE 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,404,427
Number of Sequences: 62578
Number of extensions: 310405
Number of successful extensions: 902
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 299
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)