Query psy11800
Match_columns 220
No_of_seqs 187 out of 1498
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 19:21:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 99.6 1.3E-15 2.8E-20 131.7 11.5 141 36-203 716-865 (1289)
2 KOG1219|consensus 99.4 3E-12 6.5E-17 120.0 9.3 109 53-203 3865-3978(4289)
3 KOG1214|consensus 99.1 4.8E-10 1E-14 97.9 10.8 130 53-212 693-835 (1289)
4 KOG1219|consensus 99.0 9.8E-10 2.1E-14 103.9 8.1 107 18-159 3864-3976(4289)
5 KOG1217|consensus 98.9 3.7E-08 8.1E-13 84.5 12.6 163 35-208 151-316 (487)
6 KOG4289|consensus 98.6 4.4E-08 9.5E-13 90.1 6.0 93 101-202 1219-1316(2531)
7 PF07645 EGF_CA: Calcium-bindi 98.6 2.7E-08 5.9E-13 56.2 2.4 39 161-199 1-40 (42)
8 PF07645 EGF_CA: Calcium-bindi 98.6 4E-08 8.6E-13 55.5 2.8 38 51-88 1-39 (42)
9 KOG1217|consensus 98.6 1.3E-06 2.8E-11 75.0 13.4 139 65-209 243-405 (487)
10 PF12662 cEGF: Complement Clr- 98.5 2E-07 4.4E-12 45.2 2.7 24 183-206 1-24 (24)
11 KOG4289|consensus 98.3 1.3E-06 2.9E-11 80.8 6.0 60 28-93 1214-1275(2531)
12 PF12662 cEGF: Complement Clr- 98.1 1.9E-06 4.1E-11 41.9 2.1 24 141-164 1-24 (24)
13 PF14670 FXa_inhibition: Coagu 98.1 1.4E-06 3E-11 47.1 1.7 31 170-201 6-36 (36)
14 KOG4260|consensus 98.1 2.7E-06 5.9E-11 65.9 3.8 81 77-193 221-304 (350)
15 KOG4260|consensus 98.0 1.6E-05 3.5E-10 61.7 6.3 51 142-194 217-269 (350)
16 KOG1225|consensus 97.9 0.00014 3.1E-09 62.6 10.9 123 37-193 235-362 (525)
17 PF14670 FXa_inhibition: Coagu 97.8 1.6E-05 3.5E-10 42.9 1.9 32 59-91 5-36 (36)
18 PF12947 EGF_3: EGF domain; I 97.7 1.4E-05 3E-10 43.2 1.3 35 165-201 1-36 (36)
19 smart00179 EGF_CA Calcium-bind 97.7 8.3E-05 1.8E-09 40.8 4.2 37 161-201 1-38 (39)
20 smart00179 EGF_CA Calcium-bind 97.6 0.00012 2.6E-09 40.1 4.1 31 51-83 1-33 (39)
21 PF12947 EGF_3: EGF domain; I 97.6 4.1E-05 8.9E-10 41.3 1.6 29 56-84 2-31 (36)
22 PF00008 EGF: EGF-like domain 97.4 9.4E-05 2E-09 38.9 1.7 23 171-193 5-29 (32)
23 PF00008 EGF: EGF-like domain 97.4 0.00012 2.7E-09 38.4 1.8 28 55-84 1-30 (32)
24 cd00054 EGF_CA Calcium-binding 97.3 0.00051 1.1E-08 37.1 4.0 35 162-201 2-37 (38)
25 cd00054 EGF_CA Calcium-binding 97.0 0.0014 3.1E-08 35.3 4.0 31 52-84 2-34 (38)
26 KOG1225|consensus 97.0 0.0043 9.3E-08 53.7 8.7 107 74-204 234-343 (525)
27 PF06247 Plasmod_Pvs28: Plasmo 97.0 0.00042 9E-09 51.2 2.0 132 61-198 7-165 (197)
28 smart00181 EGF Epidermal growt 96.8 0.0037 7.9E-08 33.2 4.1 23 171-193 7-29 (35)
29 cd01475 vWA_Matrilin VWA_Matri 96.6 0.0032 7E-08 48.9 4.2 44 155-199 180-223 (224)
30 cd00053 EGF Epidermal growth f 96.5 0.0063 1.4E-07 32.1 4.1 23 171-193 7-30 (36)
31 KOG0994|consensus 96.2 0.016 3.6E-07 53.8 7.2 98 20-119 935-1052(1758)
32 cd01475 vWA_Matrilin VWA_Matri 96.2 0.0086 1.9E-07 46.6 4.5 45 44-89 179-223 (224)
33 cd00053 EGF Epidermal growth f 96.0 0.014 3.1E-07 30.6 3.9 23 62-84 8-31 (36)
34 smart00181 EGF Epidermal growt 95.7 0.023 4.9E-07 30.0 3.7 23 62-84 8-30 (35)
35 KOG1226|consensus 95.4 0.2 4.4E-06 45.0 10.3 83 104-202 525-620 (783)
36 PF06247 Plasmod_Pvs28: Plasmo 95.0 0.022 4.8E-07 42.3 2.8 67 128-195 6-81 (197)
37 PF12661 hEGF: Human growth fa 93.3 0.041 8.9E-07 22.5 0.7 13 185-201 1-13 (13)
38 KOG1226|consensus 92.1 1.4 3E-05 39.9 9.2 48 104-159 566-619 (783)
39 PF07974 EGF_2: EGF-like domai 92.0 0.37 8E-06 25.1 3.5 25 171-201 7-32 (32)
40 KOG0994|consensus 91.9 0.48 1E-05 44.7 6.3 99 15-119 826-949 (1758)
41 PHA03099 epidermal growth fact 89.3 0.38 8.2E-06 33.5 2.6 42 161-206 41-85 (139)
42 PHA02887 EGF-like protein; Pro 85.0 1.1 2.4E-05 30.7 2.9 39 162-204 83-124 (126)
43 PF12946 EGF_MSP1_1: MSP1 EGF 83.3 0.95 2.1E-05 24.3 1.6 23 62-84 7-31 (37)
44 PHA02887 EGF-like protein; Pro 79.9 2 4.3E-05 29.5 2.6 36 122-161 84-123 (126)
45 PHA03099 epidermal growth fact 78.5 1.9 4.1E-05 30.1 2.2 31 128-162 51-83 (139)
46 smart00051 DSL delta serrate l 66.3 13 0.00027 22.7 3.6 11 74-84 17-27 (63)
47 KOG1836|consensus 61.1 57 0.0012 33.3 8.7 94 21-119 697-813 (1705)
48 PF00954 S_locus_glycop: S-loc 59.0 11 0.00023 25.6 2.7 30 121-151 77-107 (110)
49 KOG3516|consensus 55.6 11 0.00024 36.2 2.9 38 159-202 542-581 (1306)
50 PF01683 EB: EB module; Inter 55.2 38 0.00081 19.3 4.2 16 175-194 32-47 (52)
51 cd00055 EGF_Lam Laminin-type e 54.1 20 0.00044 20.4 2.9 25 17-41 17-41 (50)
52 PF09064 Tme5_EGF_like: Thromb 53.2 8.4 0.00018 20.2 1.0 13 184-196 18-30 (34)
53 KOG3512|consensus 49.3 45 0.00097 29.0 5.2 41 19-59 295-335 (592)
54 KOG3514|consensus 40.9 22 0.00049 34.0 2.4 34 53-92 624-659 (1591)
55 KOG3516|consensus 39.3 28 0.00061 33.7 2.8 34 49-84 542-577 (1306)
56 PF12955 DUF3844: Domain of un 39.2 19 0.00042 24.3 1.4 31 163-193 6-42 (103)
57 KOG1836|consensus 36.7 68 0.0015 32.9 5.1 53 141-202 755-812 (1705)
58 PF01826 TIL: Trypsin Inhibito 34.4 30 0.00065 20.0 1.6 21 144-165 35-55 (55)
59 smart00180 EGF_Lam Laminin-typ 28.3 71 0.0015 17.8 2.4 23 18-40 17-39 (46)
60 KOG1215|consensus 28.1 1.1E+02 0.0024 29.1 4.9 60 136-198 340-400 (877)
61 PF00053 Laminin_EGF: Laminin 23.7 28 0.0006 19.6 0.1 24 17-40 16-39 (49)
62 KOG3514|consensus 22.0 65 0.0014 31.2 2.1 34 164-203 625-660 (1591)
No 1
>KOG1214|consensus
Probab=99.65 E-value=1.3e-15 Score=131.73 Aligned_cols=141 Identities=37% Similarity=0.748 Sum_probs=110.7
Q ss_pred ccccc--cCCCCCCCCCCCCccCCCCCCC-CCCeeeeCCCceEeeCCCCCccCCCCCCccCCCcccCCCCCCcccccccc
Q psy11800 36 YTGLS--DSLSLGVSDLNVDECYENPLIC-LNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKK 112 (220)
Q Consensus 36 ~~~~~--~~~~~g~~C~~i~~C~~~~~~C-~~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~~C~~~~~~~~C~c~~~~ 112 (220)
|++++ ..+.+|.+|.++++|+..++.| .+..|++.+++|+|.|..||....++.+|..+..=.+
T Consensus 716 ~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap------------- 782 (1289)
T KOG1214|consen 716 YTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAP------------- 782 (1289)
T ss_pred eEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCC-------------
Confidence 45555 5666788999999999988889 8899999999999999999998888888876522111
Q ss_pred ccccccccccccCCC-CCC-CC--ceEecCC-CCeEeecCCCcEeCCCCCceeecCcCCCCCCCCCC-CeEecCCCCeEE
Q psy11800 113 KKKKKKLYHDECSQN-GMC-AN--GMCINMD-GSFKCQCKPGFVLSPTGHACIDVDECYENPLICLN-GRCDNTLGSYRC 186 (220)
Q Consensus 113 ~~~~~~~~~~~C~~~-~~c-~~--~~C~~~~-~~~~C~C~~G~~~~~~g~~C~~i~~C~~~~~~C~~-~~C~~~~~~~~C 186 (220)
.+.|... ..| .+ +.|+... +.|.|.|.+||.+ +|..|.++|+|.++. |+. +.|.+++++|.|
T Consensus 783 --------~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsG--DG~~c~dvDeC~psr--Chp~A~CyntpgsfsC 850 (1289)
T KOG1214|consen 783 --------ANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSG--DGHQCTDVDECSPSR--CHPAATCYNTPGSFSC 850 (1289)
T ss_pred --------CCccccCccccCcCCceEEEecCCceEEEeecCCccC--CccccccccccCccc--cCCCceEecCCCccee
Confidence 1445433 333 22 4666554 5699999999976 789999999998665 985 899999999999
Q ss_pred eCCCCCccCCCCCCCCc
Q psy11800 187 ACQPGYSPSPDGGFCVD 203 (220)
Q Consensus 187 ~C~~G~~~~~~g~~C~~ 203 (220)
+|.+||. .+|..|.+
T Consensus 851 ~C~pGy~--GDGf~CVP 865 (1289)
T KOG1214|consen 851 RCQPGYY--GDGFQCVP 865 (1289)
T ss_pred ecccCcc--CCCceecC
Confidence 9999998 57888853
No 2
>KOG1219|consensus
Probab=99.35 E-value=3e-12 Score=120.02 Aligned_cols=109 Identities=39% Similarity=0.963 Sum_probs=89.6
Q ss_pred CccCCCCCCC-CCCeeeeCC-CceEeeCCCCCccCCCCCCccCCCcccCCCCCCccccccccccccccccccccCCCCCC
Q psy11800 53 DECYENPLIC-LNGRCDNTL-GSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQNGMC 130 (220)
Q Consensus 53 ~~C~~~~~~C-~~~~C~~~~-g~~~C~C~~g~~~~~~~~~C~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~C~~~~~c 130 (220)
+.|..+| | +.|.|+..+ +.|.|.|++.|. |+.|+ +++++|..+++-
T Consensus 3865 d~C~~np--CqhgG~C~~~~~ggy~CkCpsqys----G~~CE--------------------------i~~epC~snPC~ 3912 (4289)
T KOG1219|consen 3865 DPCNDNP--CQHGGTCISQPKGGYKCKCPSQYS----GNHCE--------------------------IDLEPCASNPCL 3912 (4289)
T ss_pred cccccCc--ccCCCEecCCCCCceEEeCccccc----Ccccc--------------------------cccccccCCCCC
Confidence 8898888 8 558999876 669999999887 45554 345677655555
Q ss_pred CCceEecCCCCeEeecCCCcEeCCCCCcee--ecCcCCCCCCCCCC-CeEecCCCCeEEeCCCCCccCCCCCCCCc
Q psy11800 131 ANGMCINMDGSFKCQCKPGFVLSPTGHACI--DVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCVD 203 (220)
Q Consensus 131 ~~~~C~~~~~~~~C~C~~G~~~~~~g~~C~--~i~~C~~~~~~C~~-~~C~~~~~~~~C~C~~G~~~~~~g~~C~~ 203 (220)
.+++|+...++|.|.|+.|| +|..|+ .+++|..+. |.+ |.|+|..|+|.|.|.+||. |..|..
T Consensus 3913 ~GgtCip~~n~f~CnC~~gy----TG~~Ce~~Gi~eCs~n~--C~~gg~C~n~~gsf~CncT~g~~----gr~c~~ 3978 (4289)
T KOG1219|consen 3913 TGGTCIPFYNGFLCNCPNGY----TGKRCEARGISECSKNV--CGTGGQCINIPGSFHCNCTPGIL----GRTCCA 3978 (4289)
T ss_pred CCCEEEecCCCeeEeCCCCc----cCceeeccccccccccc--ccCCceeeccCCceEeccChhHh----cccCcc
Confidence 56899999999999999999 899993 389998776 987 8999999999999999998 888843
No 3
>KOG1214|consensus
Probab=99.13 E-value=4.8e-10 Score=97.90 Aligned_cols=130 Identities=37% Similarity=0.936 Sum_probs=95.3
Q ss_pred CccCCCCCCC-CCCeeeeCC-CceEeeCCCCCccCCCCCCccCCCcccCCCCCCccccccccccccccccccccCCCCCC
Q psy11800 53 DECYENPLIC-LNGRCDNTL-GSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQNGMC 130 (220)
Q Consensus 53 ~~C~~~~~~C-~~~~C~~~~-g~~~C~C~~g~~~~~~~~~C~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~C~~~~~c 130 (220)
+.|....+.| .++.|.... -.|+|.|..||.+ +++.|.+.++|... ...|
T Consensus 693 npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~g--dgr~c~d~~eca~~--------------------------~~~C 744 (1289)
T KOG1214|consen 693 NPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQG--DGRNCVDENECATG--------------------------FHRC 744 (1289)
T ss_pred ccceecCcccCCCccccCCCCcceEEEEeeccCC--CCCCCCChhhhccC--------------------------CCCC
Confidence 3444334455 446676554 3588888888875 47778777554431 2334
Q ss_pred -CCceEecCCCCeEeecCCCcEeCCCCCceee------cCcCCCCCCCCC-C--CeEecCC-CCeEEeCCCCCccCCCCC
Q psy11800 131 -ANGMCINMDGSFKCQCKPGFVLSPTGHACID------VDECYENPLICL-N--GRCDNTL-GSYRCACQPGYSPSPDGG 199 (220)
Q Consensus 131 -~~~~C~~~~~~~~C~C~~G~~~~~~g~~C~~------i~~C~~~~~~C~-~--~~C~~~~-~~~~C~C~~G~~~~~~g~ 199 (220)
.+++|++.++.|+|+|..||....++.+|.. ++.|..+.+.|+ + +.|+... +.|.|.|.+||+ .+|.
T Consensus 745 Gp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfs--GDG~ 822 (1289)
T KOG1214|consen 745 GPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFS--GDGH 822 (1289)
T ss_pred CCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCcc--CCcc
Confidence 4689999999999999999998878889953 567888877896 3 4677765 469999999998 6789
Q ss_pred CCCcCCCCCCCCC
Q psy11800 200 FCVDRDECRTPGG 212 (220)
Q Consensus 200 ~C~~~~~C~~~~~ 212 (220)
.|.++|+|.+.+.
T Consensus 823 ~c~dvDeC~psrC 835 (1289)
T KOG1214|consen 823 QCTDVDECSPSRC 835 (1289)
T ss_pred ccccccccCcccc
Confidence 9999999986643
No 4
>KOG1219|consensus
Probab=99.01 E-value=9.8e-10 Score=103.86 Aligned_cols=107 Identities=33% Similarity=0.709 Sum_probs=88.7
Q ss_pred CCCcccCCCCCCCCCCC----CccccccCCCCCCCC-CCCCccCCCCCCC-CCCeeeeCCCceEeeCCCCCccCCCCCCc
Q psy11800 18 AGPAVVHSTYTGLSETQ----TYTGLSDSLSLGVSD-LNVDECYENPLIC-LNGRCDNTLGSYRCACQPGYSPSPDGGFC 91 (220)
Q Consensus 18 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~C-~~i~~C~~~~~~C-~~~~C~~~~g~~~C~C~~g~~~~~~~~~C 91 (220)
+.+|.-+|+..|+.|.. .|.|.|...|.|..| .++.+|.++| | ..+.|+...+.|.|.|+.||+ |+.|
T Consensus 3864 ~d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snP--C~~GgtCip~~n~f~CnC~~gyT----G~~C 3937 (4289)
T KOG1219|consen 3864 TDPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNP--CLTGGTCIPFYNGFLCNCPNGYT----GKRC 3937 (4289)
T ss_pred ccccccCcccCCCEecCCCCCceEEeCcccccCcccccccccccCCC--CCCCCEEEecCCCeeEeCCCCcc----Ccee
Confidence 36788888888877765 499999999999999 6899999999 9 669999999999999999998 6777
Q ss_pred cCCCcccCCCCCCccccccccccccccccccccCCCCCCCCceEecCCCCeEeecCCCcEeCCCCCce
Q psy11800 92 VDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC 159 (220)
Q Consensus 92 ~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~C~~~~~c~~~~C~~~~~~~~C~C~~G~~~~~~g~~C 159 (220)
+..+ +++|..+.+-..|.|++.+|+|+|.|.+|| .|+.|
T Consensus 3938 e~~G-------------------------i~eCs~n~C~~gg~C~n~~gsf~CncT~g~----~gr~c 3976 (4289)
T KOG1219|consen 3938 EARG-------------------------ISECSKNVCGTGGQCINIPGSFHCNCTPGI----LGRTC 3976 (4289)
T ss_pred eccc-------------------------ccccccccccCCceeeccCCceEeccChhH----hcccC
Confidence 6531 367755555556899999999999999999 55555
No 5
>KOG1217|consensus
Probab=98.87 E-value=3.7e-08 Score=84.53 Aligned_cols=163 Identities=34% Similarity=0.663 Sum_probs=113.2
Q ss_pred CccccccCCCCCCCCCCC-CccCCCCCCC-CCCeeeeCCCceEeeCCCCCccCCCCCCccCCCcccCCCCCCcccccccc
Q psy11800 35 TYTGLSDSLSLGVSDLNV-DECYENPLIC-LNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKK 112 (220)
Q Consensus 35 ~~~~~~~~~~~g~~C~~i-~~C~~~~~~C-~~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~~C~~~~~~~~C~c~~~~ 112 (220)
.+.+.+..+|.+..+... ++|......| +.+.|.+..++|.|.|+++|.+...... .....|... ..|.+..++
T Consensus 151 ~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~-~~~~~c~~~---~~~~~~~g~ 226 (487)
T KOG1217|consen 151 PFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETT-GNGGTCVDS---VACSCPPGA 226 (487)
T ss_pred ceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCC-CCCceEecc---eeccCCCCC
Confidence 355666777778888543 7888655558 4589999999999999999985432221 111222222 456777777
Q ss_pred ccccccccccccCCCCCCCCceEecCCCCeEeecCCCcEeCCCCCceeecCcCCCCCCCCCC-CeEecCCCCeEEeCCCC
Q psy11800 113 KKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLN-GRCDNTLGSYRCACQPG 191 (220)
Q Consensus 113 ~~~~~~~~~~~C~~~~~c~~~~C~~~~~~~~C~C~~G~~~~~~g~~C~~i~~C~~~~~~C~~-~~C~~~~~~~~C~C~~G 191 (220)
.+..+...+.+|... . ++|++..++++|.|++||.+... ..+.++++|..... |.+ +.|++..+.|.|.|++|
T Consensus 227 ~~~~c~~~~~~~~~~---~-~~c~~~~~~~~C~~~~g~~~~~~-~~~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~C~~g 300 (487)
T KOG1217|consen 227 RGPECEVSIVECASG---D-GTCVNTVGSYTCRCPEGYTGDAC-VTCVDVDSCALIAS-CPNGGTCVNVPGSYRCTCPPG 300 (487)
T ss_pred CCCCcccccccccCC---C-CcccccCCceeeeCCCCcccccc-ceeeeccccCCCCc-cCCCCeeecCCCcceeeCCCC
Confidence 777777766666443 3 68888888899999999955321 35688999998764 875 89999999999999999
Q ss_pred CccCCCCCCCCcCCCCC
Q psy11800 192 YSPSPDGGFCVDRDECR 208 (220)
Q Consensus 192 ~~~~~~g~~C~~~~~C~ 208 (220)
|..... ..+.+..+|.
T Consensus 301 ~~g~~~-~~~~~~~~C~ 316 (487)
T KOG1217|consen 301 FTGRLC-TECVDVDECS 316 (487)
T ss_pred CCCCCC-cccccccccc
Confidence 993222 1233445564
No 6
>KOG4289|consensus
Probab=98.65 E-value=4.4e-08 Score=90.06 Aligned_cols=93 Identities=29% Similarity=0.641 Sum_probs=74.8
Q ss_pred CCCCccccccccccccccccccccCCCCCCCCceEecCCCCeEeecCCCcEeCCCCCcee-e--cCcCCCCCCCCCC-Ce
Q psy11800 101 GDHDECSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACI-D--VDECYENPLICLN-GR 176 (220)
Q Consensus 101 ~~~~~C~c~~~~~~~~~~~~~~~C~~~~~c~~~~C~~~~~~~~C~C~~G~~~~~~g~~C~-~--i~~C~~~~~~C~~-~~ 176 (220)
.+...|.|++||+|..|+.++|.|-..++-+++.|....++|+|.|.+|| .|.+|+ + .-.|.++ .|.| ++
T Consensus 1219 vnglrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~----tGehCEvs~~agrCvpG--vC~nggt 1292 (2531)
T KOG4289|consen 1219 VNGLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGF----TGEHCEVSARAGRCVPG--VCKNGGT 1292 (2531)
T ss_pred cCceeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCc----cccceeeecccCccccc--eecCCCE
Confidence 45678999999999999999999977777778999999999999999999 889993 2 2346554 4887 79
Q ss_pred EecCC-CCeEEeCCCCCccCCCCCCCC
Q psy11800 177 CDNTL-GSYRCACQPGYSPSPDGGFCV 202 (220)
Q Consensus 177 C~~~~-~~~~C~C~~G~~~~~~g~~C~ 202 (220)
|++.. ++|.|+|+.|-. .+..|+
T Consensus 1293 C~~~~nggf~c~Cp~ge~---e~prC~ 1316 (2531)
T KOG4289|consen 1293 CVNLLNGGFCCHCPYGEF---EDPRCE 1316 (2531)
T ss_pred EeecCCCceeccCCCccc---CCCceE
Confidence 99864 789999998832 355565
No 7
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.61 E-value=2.7e-08 Score=56.15 Aligned_cols=39 Identities=56% Similarity=1.147 Sum_probs=33.3
Q ss_pred ecCcCCCCCCCCC-CCeEecCCCCeEEeCCCCCccCCCCC
Q psy11800 161 DVDECYENPLICL-NGRCDNTLGSYRCACQPGYSPSPDGG 199 (220)
Q Consensus 161 ~i~~C~~~~~~C~-~~~C~~~~~~~~C~C~~G~~~~~~g~ 199 (220)
|||||+..++.|. ++.|+|+.|+|.|.|++||.+..++.
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~ 40 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGT 40 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSS
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCC
Confidence 6899998888897 48999999999999999998554443
No 8
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.60 E-value=4e-08 Score=55.49 Aligned_cols=38 Identities=55% Similarity=1.161 Sum_probs=32.5
Q ss_pred CCCccCCCCCCC-CCCeeeeCCCceEeeCCCCCccCCCC
Q psy11800 51 NVDECYENPLIC-LNGRCDNTLGSYRCACQPGYSPSPDG 88 (220)
Q Consensus 51 ~i~~C~~~~~~C-~~~~C~~~~g~~~C~C~~g~~~~~~~ 88 (220)
|||||...++.| .++.|+|+.|+|.|.|++||.....+
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~ 39 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDG 39 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTS
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCC
Confidence 589999887789 57999999999999999999854433
No 9
>KOG1217|consensus
Probab=98.59 E-value=1.3e-06 Score=74.98 Aligned_cols=139 Identities=43% Similarity=0.892 Sum_probs=99.8
Q ss_pred CeeeeCCCceEeeCCCCCccCC-----CCCCcc------CCCcccCCCCCCccccccccccccc--cccccccC---CCC
Q psy11800 65 GRCDNTLGSYRCACQPGYSPSP-----DGGFCV------DRDECRTPGDHDECSQKKKKKKKKK--KLYHDECS---QNG 128 (220)
Q Consensus 65 ~~C~~~~g~~~C~C~~g~~~~~-----~~~~C~------~~~~C~~~~~~~~C~c~~~~~~~~~--~~~~~~C~---~~~ 128 (220)
+.|.+..++|.|.|++||.+.. +...|. ....|......+.|.|..+|.+..+ ..+...|. ...
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~ 322 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDECSPRNAGG 322 (487)
T ss_pred CcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCccccccccccccccCC
Confidence 6888888899999999998764 222232 2334444445588999999999998 33445674 223
Q ss_pred CCCC-ceE--ecCCCCeEeecCCCcEeCCCCCceeec-CcCCCCCCCCCC-CeEec-CCCCeEEeCCCCCccC--CCCCC
Q psy11800 129 MCAN-GMC--INMDGSFKCQCKPGFVLSPTGHACIDV-DECYENPLICLN-GRCDN-TLGSYRCACQPGYSPS--PDGGF 200 (220)
Q Consensus 129 ~c~~-~~C--~~~~~~~~C~C~~G~~~~~~g~~C~~i-~~C~~~~~~C~~-~~C~~-~~~~~~C~C~~G~~~~--~~g~~ 200 (220)
.|.+ +.| ......+.|.|..+| .+..|... ++|...+ +.+ +.|++ ..+.|.|.|..+|.+. .++..
T Consensus 323 ~c~~g~~C~~~~~~~~~~C~c~~~~----~g~~C~~~~~~C~~~~--~~~~~~c~~~~~~~~~c~~~~~~~~~~~~~~~~ 396 (487)
T KOG1217|consen 323 PCANGGTCNTLGSFGGFRCACGPGF----TGRRCEDSNDECASSP--CCPGGTCVNETPGSYRCACPAGFAGKANGDGVG 396 (487)
T ss_pred cCCCCcccccCCCCCCCCcCCCCCC----CCCccccCCccccCCc--cccCCEeccCCCCCeEecCCCccccCCcccccc
Confidence 3444 366 333456789999997 88999777 4898776 554 79999 7899999999999853 56677
Q ss_pred CCcCCCCCC
Q psy11800 201 CVDRDECRT 209 (220)
Q Consensus 201 C~~~~~C~~ 209 (220)
+.++++|..
T Consensus 397 ~~~~~~c~~ 405 (487)
T KOG1217|consen 397 CEDIDECSG 405 (487)
T ss_pred ccccccccC
Confidence 888888865
No 10
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=98.45 E-value=2e-07 Score=45.24 Aligned_cols=24 Identities=63% Similarity=1.263 Sum_probs=22.7
Q ss_pred CeEEeCCCCCccCCCCCCCCcCCC
Q psy11800 183 SYRCACQPGYSPSPDGGFCVDRDE 206 (220)
Q Consensus 183 ~~~C~C~~G~~~~~~g~~C~~~~~ 206 (220)
+|.|.|++||.+.++++.|++|||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 689999999999999999999987
No 11
>KOG4289|consensus
Probab=98.29 E-value=1.3e-06 Score=80.76 Aligned_cols=60 Identities=30% Similarity=0.681 Sum_probs=49.9
Q ss_pred CCCCCCCCccccccCCCCCCCC-CCCCccCCCCCCC-CCCeeeeCCCceEeeCCCCCccCCCCCCccC
Q psy11800 28 TGLSETQTYTGLSDSLSLGVSD-LNVDECYENPLIC-LNGRCDNTLGSYRCACQPGYSPSPDGGFCVD 93 (220)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~g~~C-~~i~~C~~~~~~C-~~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~ 93 (220)
+-+.--..+.|.|+++|.|..| ++||+|.+.| | ++++|....|.|+|.|.+||+ |.+|+.
T Consensus 1214 Rpi~pvnglrCrCPpGFTgd~CeTeiDlCYs~p--C~nng~C~srEggYtCeCrpg~t----GehCEv 1275 (2531)
T KOG4289|consen 1214 RPIHPVNGLRCRCPPGFTGDYCETEIDLCYSGP--CGNNGRCRSREGGYTCECRPGFT----GEHCEV 1275 (2531)
T ss_pred eeccccCceeEeCCCCCCcccccchhHhhhcCC--CCCCCceEEecCceeEEecCCcc----ccceee
Confidence 3344445678888889999999 6899999988 9 889999999999999999999 566653
No 12
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=98.14 E-value=1.9e-06 Score=41.87 Aligned_cols=24 Identities=54% Similarity=1.315 Sum_probs=22.1
Q ss_pred CeEeecCCCcEeCCCCCceeecCc
Q psy11800 141 SFKCQCKPGFVLSPTGHACIDVDE 164 (220)
Q Consensus 141 ~~~C~C~~G~~~~~~g~~C~~i~~ 164 (220)
+|+|+|++||++.++++.|.||||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 589999999999999999999986
No 13
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.13 E-value=1.4e-06 Score=47.05 Aligned_cols=31 Identities=52% Similarity=1.043 Sum_probs=25.1
Q ss_pred CCCCCCeEecCCCCeEEeCCCCCccCCCCCCC
Q psy11800 170 LICLNGRCDNTLGSYRCACQPGYSPSPDGGFC 201 (220)
Q Consensus 170 ~~C~~~~C~~~~~~~~C~C~~G~~~~~~g~~C 201 (220)
+.|.+ .|++++++|+|.|++||.|+.|+++|
T Consensus 6 GgC~h-~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 6 GGCSH-ICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp GGSSS-EEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCcCC-CCccCCCceEeECCCCCEECcCCCCC
Confidence 34765 89999999999999999999988865
No 14
>KOG4260|consensus
Probab=98.12 E-value=2.7e-06 Score=65.95 Aligned_cols=81 Identities=40% Similarity=0.850 Sum_probs=57.7
Q ss_pred eCCCCCccCCCCCCccCCCcccCCCCCCccccccccccccccccccccCCCCCC-CCceEecCCCCeEeecCCCcEeCCC
Q psy11800 77 ACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQNGMC-ANGMCINMDGSFKCQCKPGFVLSPT 155 (220)
Q Consensus 77 ~C~~g~~~~~~~~~C~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~C~~~~~c-~~~~C~~~~~~~~C~C~~G~~~~~~ 155 (220)
.|..||.+. ...|.++++|... ...| .+..|+|+.|+|+|.+.+|| .
T Consensus 221 kCkkGW~ld--e~gCvDvnEC~~e--------------------------p~~c~~~qfCvNteGSf~C~dk~Gy----~ 268 (350)
T KOG4260|consen 221 KCKKGWKLD--EEGCVDVNECQNE--------------------------PAPCKAHQFCVNTEGSFKCEDKEGY----K 268 (350)
T ss_pred hhcccceec--ccccccHHHHhcC--------------------------CCCCChhheeecCCCceEecccccc----c
Confidence 588888874 5667777655432 1233 24589999999999999999 3
Q ss_pred CCceeecCcCCCCCCCCC--CCeEecCCCCeEEeCCCCCc
Q psy11800 156 GHACIDVDECYENPLICL--NGRCDNTLGSYRCACQPGYS 193 (220)
Q Consensus 156 g~~C~~i~~C~~~~~~C~--~~~C~~~~~~~~C~C~~G~~ 193 (220)
+ ++|+|..--..|. +..|.|+.++|+|.|..|+.
T Consensus 269 ~----g~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 269 K----GVDECQFCADVCASKNRPCMNIDGQYRCVCFSGLI 304 (350)
T ss_pred C----ChHHhhhhhhhcccCCCCcccCCccEEEEecccce
Confidence 3 2666654212253 46899999999999998875
No 15
>KOG4260|consensus
Probab=98.02 E-value=1.6e-05 Score=61.74 Aligned_cols=51 Identities=39% Similarity=0.898 Sum_probs=42.8
Q ss_pred eEe-ecCCCcEeCCCCCceeecCcCCCCCCCCC-CCeEecCCCCeEEeCCCCCcc
Q psy11800 142 FKC-QCKPGFVLSPTGHACIDVDECYENPLICL-NGRCDNTLGSYRCACQPGYSP 194 (220)
Q Consensus 142 ~~C-~C~~G~~~~~~g~~C~~i~~C~~~~~~C~-~~~C~~~~~~~~C~C~~G~~~ 194 (220)
..| +|..||.+ +-..|.|||+|+..+-+|. +..|+|+.|+|.|.+.+||..
T Consensus 217 k~C~kCkkGW~l--de~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 217 KGCSKCKKGWKL--DEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred CChhhhccccee--cccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 346 68999988 4667999999997776786 469999999999999999984
No 16
>KOG1225|consensus
Probab=97.92 E-value=0.00014 Score=62.62 Aligned_cols=123 Identities=29% Similarity=0.660 Sum_probs=75.1
Q ss_pred cccccCCCCCCCCCCCCccCCCCCCC-CCCeeeeCCCceEeeCCCCCccCCCCC-CccCCCcccCCC--CCCcccccccc
Q psy11800 37 TGLSDSLSLGVSDLNVDECYENPLIC-LNGRCDNTLGSYRCACQPGYSPSPDGG-FCVDRDECRTPG--DHDECSQKKKK 112 (220)
Q Consensus 37 ~~~~~~~~~g~~C~~i~~C~~~~~~C-~~~~C~~~~g~~~C~C~~g~~~~~~~~-~C~~~~~C~~~~--~~~~C~c~~~~ 112 (220)
.+.+...+.+..|+. -.|.. .| ..+.|.+. +|+|++||++..... .|... |.... ....|.|..+|
T Consensus 235 ic~c~~~~~g~~c~~-~~C~~---~c~~~g~c~~G----~CIC~~Gf~G~dC~e~~Cp~~--cs~~g~~~~g~CiC~~g~ 304 (525)
T KOG1225|consen 235 ICECPEGYFGPLCST-IYCPG---GCTGRGQCVEG----RCICPPGFTGDDCDELVCPVD--CSGGGVCVDGECICNPGY 304 (525)
T ss_pred eeecCCceeCCcccc-ccCCC---CCcccceEeCC----eEeCCCCCcCCCCCcccCCcc--cCCCceecCCEeecCCCc
Confidence 455555666777763 23432 24 33566544 489999999543222 23222 33322 23589999999
Q ss_pred ccccccccccccCCCCCCCCceEecCCCCeEeecCCCcEeCCCCCceeecCcCCCCCCCCCC-CeEecCCCCeEEeCCCC
Q psy11800 113 KKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLN-GRCDNTLGSYRCACQPG 191 (220)
Q Consensus 113 ~~~~~~~~~~~C~~~~~c~~~~C~~~~~~~~C~C~~G~~~~~~g~~C~~i~~C~~~~~~C~~-~~C~~~~~~~~C~C~~G 191 (220)
+|..|.+.. |. ..+-.+|.|+ .+ +|.|.+|| .|..|...+ |.+ +.|++. |.|..|
T Consensus 305 ~G~dCs~~~--cp-adC~g~G~Ci--~G--~C~C~~Gy----~G~~C~~~~--------C~~~g~cv~g-----C~C~~G 360 (525)
T KOG1225|consen 305 SGKDCSIRR--CP-ADCSGHGKCI--DG--ECLCDEGY----TGELCIQRA--------CSGGGQCVNG-----CKCKKG 360 (525)
T ss_pred ccccccccc--CC-ccCCCCCccc--CC--ceEeCCCC----cCCcccccc--------cCCCceeccC-----ceeccC
Confidence 999887532 32 2233457887 22 89999999 777774331 554 566542 889999
Q ss_pred Cc
Q psy11800 192 YS 193 (220)
Q Consensus 192 ~~ 193 (220)
|+
T Consensus 361 w~ 362 (525)
T KOG1225|consen 361 WR 362 (525)
T ss_pred cc
Confidence 98
No 17
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.77 E-value=1.6e-05 Score=42.89 Aligned_cols=32 Identities=50% Similarity=1.001 Sum_probs=24.8
Q ss_pred CCCCCCCeeeeCCCceEeeCCCCCccCCCCCCc
Q psy11800 59 PLICLNGRCDNTLGSYRCACQPGYSPSPDGGFC 91 (220)
Q Consensus 59 ~~~C~~~~C~~~~g~~~C~C~~g~~~~~~~~~C 91 (220)
.+.|.+ .|++++++|+|.|++||.+..|+++|
T Consensus 5 NGgC~h-~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 5 NGGCSH-ICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp GGGSSS-EEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCcCC-CCccCCCceEeECCCCCEECcCCCCC
Confidence 344643 89999999999999999998887765
No 18
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.74 E-value=1.4e-05 Score=43.22 Aligned_cols=35 Identities=57% Similarity=1.169 Sum_probs=24.3
Q ss_pred CCCCCCCCC-CCeEecCCCCeEEeCCCCCccCCCCCCC
Q psy11800 165 CYENPLICL-NGRCDNTLGSYRCACQPGYSPSPDGGFC 201 (220)
Q Consensus 165 C~~~~~~C~-~~~C~~~~~~~~C~C~~G~~~~~~g~~C 201 (220)
|+.+++.|+ +|+|+++.++|.|+|.+||. .+|..|
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEE--CCSTCE
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCc--cCCcCC
Confidence 344445687 59999999999999999998 345543
No 19
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.70 E-value=8.3e-05 Score=40.76 Aligned_cols=37 Identities=59% Similarity=1.291 Sum_probs=28.7
Q ss_pred ecCcCCCCCCCCCC-CeEecCCCCeEEeCCCCCccCCCCCCC
Q psy11800 161 DVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC 201 (220)
Q Consensus 161 ~i~~C~~~~~~C~~-~~C~~~~~~~~C~C~~G~~~~~~g~~C 201 (220)
++++|... ..|.+ +.|++..++|.|.|++||. ++..|
T Consensus 1 d~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CcccCcCC-CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 36778763 24875 7999999999999999997 35555
No 20
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.62 E-value=0.00012 Score=40.07 Aligned_cols=31 Identities=61% Similarity=1.440 Sum_probs=25.7
Q ss_pred CCCccCC-CCCCC-CCCeeeeCCCceEeeCCCCCc
Q psy11800 51 NVDECYE-NPLIC-LNGRCDNTLGSYRCACQPGYS 83 (220)
Q Consensus 51 ~i~~C~~-~~~~C-~~~~C~~~~g~~~C~C~~g~~ 83 (220)
++++|.. .+ | .++.|+++.++|.|.|+.||.
T Consensus 1 d~~~C~~~~~--C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 1 DIDECASGNP--CQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CcccCcCCCC--cCCCCEeECCCCCeEeECCCCCc
Confidence 3677876 44 8 557999999999999999997
No 21
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.57 E-value=4.1e-05 Score=41.34 Aligned_cols=29 Identities=52% Similarity=0.992 Sum_probs=22.5
Q ss_pred CCCCCCC-CCCeeeeCCCceEeeCCCCCcc
Q psy11800 56 YENPLIC-LNGRCDNTLGSYRCACQPGYSP 84 (220)
Q Consensus 56 ~~~~~~C-~~~~C~~~~g~~~C~C~~g~~~ 84 (220)
..+++.| .++.|+++.++|.|.|.+||.+
T Consensus 2 ~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 2 LENNGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp TTGGGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 3344558 7899999999999999999997
No 22
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.41 E-value=9.4e-05 Score=38.90 Aligned_cols=23 Identities=48% Similarity=1.226 Sum_probs=20.9
Q ss_pred CCCC-CeEecCC-CCeEEeCCCCCc
Q psy11800 171 ICLN-GRCDNTL-GSYRCACQPGYS 193 (220)
Q Consensus 171 ~C~~-~~C~~~~-~~~~C~C~~G~~ 193 (220)
+|.| |+|++.. +.|.|.|++||.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCc
Confidence 3887 8999998 899999999998
No 23
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.36 E-value=0.00012 Score=38.42 Aligned_cols=28 Identities=46% Similarity=1.214 Sum_probs=23.2
Q ss_pred cCCCCCCC-CCCeeeeCC-CceEeeCCCCCcc
Q psy11800 55 CYENPLIC-LNGRCDNTL-GSYRCACQPGYSP 84 (220)
Q Consensus 55 C~~~~~~C-~~~~C~~~~-g~~~C~C~~g~~~ 84 (220)
|.++| | ++++|++.. +.|.|.|++||++
T Consensus 1 C~~~~--C~n~g~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 1 CSSNP--CQNGGTCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp TTTTS--STTTEEEEEESTSEEEEEEBTTEES
T ss_pred CCCCc--CCCCeEEEeCCCCCEEeECCCCCcc
Confidence 34455 8 569999998 8999999999985
No 24
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.31 E-value=0.00051 Score=37.12 Aligned_cols=35 Identities=57% Similarity=1.286 Sum_probs=27.3
Q ss_pred cCcCCCCCCCCCC-CeEecCCCCeEEeCCCCCccCCCCCCC
Q psy11800 162 VDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC 201 (220)
Q Consensus 162 i~~C~~~~~~C~~-~~C~~~~~~~~C~C~~G~~~~~~g~~C 201 (220)
+++|... ..|.+ +.|++..+.|.|.|++||. +..|
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~----g~~C 37 (38)
T cd00054 2 IDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT----GRNC 37 (38)
T ss_pred cccCCCC-CCcCCCCEeECCCCCeEeECCCCCc----CCcC
Confidence 5677652 24875 7999999999999999998 6655
No 25
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.03 E-value=0.0014 Score=35.26 Aligned_cols=31 Identities=61% Similarity=1.411 Sum_probs=25.0
Q ss_pred CCccCC-CCCCC-CCCeeeeCCCceEeeCCCCCcc
Q psy11800 52 VDECYE-NPLIC-LNGRCDNTLGSYRCACQPGYSP 84 (220)
Q Consensus 52 i~~C~~-~~~~C-~~~~C~~~~g~~~C~C~~g~~~ 84 (220)
+++|.. .+ | .++.|++..+.|.|.|+.||.+
T Consensus 2 ~~~C~~~~~--C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASGNP--CQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCCCC--cCCCCEeECCCCCeEeECCCCCcC
Confidence 567765 44 8 4579999999999999999984
No 26
>KOG1225|consensus
Probab=97.02 E-value=0.0043 Score=53.72 Aligned_cols=107 Identities=27% Similarity=0.710 Sum_probs=66.6
Q ss_pred eEeeCCCCCccCCC-CCCccCCCcccCCCCCCccccccccccccccccccccCCCCCCCC-ceEecCCCCeEeecCCCcE
Q psy11800 74 YRCACQPGYSPSPD-GGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQNGMCAN-GMCINMDGSFKCQCKPGFV 151 (220)
Q Consensus 74 ~~C~C~~g~~~~~~-~~~C~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~C~~~~~c~~-~~C~~~~~~~~C~C~~G~~ 151 (220)
..|.|+.+|.+... ...|.......-.-...+|.|..||+|..|... .|-.. |.+ +.+++. .|.|.+||
T Consensus 234 ~ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e~--~Cp~~--cs~~g~~~~g----~CiC~~g~- 304 (525)
T KOG1225|consen 234 GICECPEGYFGPLCSTIYCPGGCTGRGQCVEGRCICPPGFTGDDCDEL--VCPVD--CSGGGVCVDG----ECICNPGY- 304 (525)
T ss_pred ceeecCCceeCCccccccCCCCCcccceEeCCeEeCCCCCcCCCCCcc--cCCcc--cCCCceecCC----EeecCCCc-
Confidence 47888888874322 112222111111124678999999999988752 33222 333 344333 89999999
Q ss_pred eCCCCCceeecCcCCCCCCCCCC-CeEecCCCCeEEeCCCCCccCCCCCCCCcC
Q psy11800 152 LSPTGHACIDVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCVDR 204 (220)
Q Consensus 152 ~~~~g~~C~~i~~C~~~~~~C~~-~~C~~~~~~~~C~C~~G~~~~~~g~~C~~~ 204 (220)
.|..|. +..|. ..|.+ +.|+ .+ +|.|.+||. |..|...
T Consensus 305 ---~G~dCs-~~~cp---adC~g~G~Ci--~G--~C~C~~Gy~----G~~C~~~ 343 (525)
T KOG1225|consen 305 ---SGKDCS-IRRCP---ADCSGHGKCI--DG--ECLCDEGYT----GELCIQR 343 (525)
T ss_pred ---cccccc-cccCC---ccCCCCCccc--CC--ceEeCCCCc----CCccccc
Confidence 778884 23353 23874 8998 23 599999999 8888654
No 27
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=96.99 E-value=0.00042 Score=51.21 Aligned_cols=132 Identities=25% Similarity=0.588 Sum_probs=77.0
Q ss_pred CCCCCeeeeCCCceEeeCCCCCccCCCCCCccCCCcc----------------cCCC-----CCCccccccccccccccc
Q psy11800 61 ICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC----------------RTPG-----DHDECSQKKKKKKKKKKL 119 (220)
Q Consensus 61 ~C~~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~~C----------------~~~~-----~~~~C~c~~~~~~~~~~~ 119 (220)
.|.+|..+...+-|.|.|..||.+. +..+|+...+| .... ..+.|.|..+|+...-.-
T Consensus 7 ~CKNG~LiQMSNHfEC~Cnegfvl~-~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vC 85 (197)
T PF06247_consen 7 ICKNGYLIQMSNHFECKCNEGFVLK-NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVC 85 (197)
T ss_dssp --BTEEEEEESSEEEEEESTTEEEE-ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSE
T ss_pred cccCCEEEEccCceEEEcCCCcEEc-cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCeE
Confidence 3888999999999999999999865 24455443333 3222 456788888887655433
Q ss_pred cccccCCCCCCCCceEecCC---CCeEeecCCCcEeCCCCCce--eecCcCCCCCCCCC-CCeEecCCCCeEEeCCCCCc
Q psy11800 120 YHDECSQNGMCANGMCINMD---GSFKCQCKPGFVLSPTGHAC--IDVDECYENPLICL-NGRCDNTLGSYRCACQPGYS 193 (220)
Q Consensus 120 ~~~~C~~~~~c~~~~C~~~~---~~~~C~C~~G~~~~~~g~~C--~~i~~C~~~~~~C~-~~~C~~~~~~~~C~C~~G~~ 193 (220)
..+.|. .-.|..|.|+-.+ ....|+|.-|+.. .+...| ..-.+|+.. |. +-.|....+-|.|.+..||.
T Consensus 86 vp~~C~-~~~Cg~GKCI~d~~~~~~~~CSC~IGkV~-~dn~kCtk~G~T~C~LK---Ck~nE~CK~~~~~Y~C~~~~~~~ 160 (197)
T PF06247_consen 86 VPNKCN-NKDCGSGKCILDPDNPNNPTCSCNIGKVP-DDNKKCTKTGETKCSLK---CKENEECKLVDGYYKCVCKEGFP 160 (197)
T ss_dssp EEGGGS-S---TTEEEEEEEGGGSEEEEEE-TEEET-TTTTESEEEE-----------TTTEEEEEETTEEEEEE-TT-E
T ss_pred chhhcC-ceecCCCeEEecCCCCCCceeEeeeceEe-ccCCcccCCCccceeee---cCCCcceeeeCcEEEeecCCCCC
Confidence 335563 3445677786432 3458999999873 256667 334556544 64 46899999999999999998
Q ss_pred cCCCC
Q psy11800 194 PSPDG 198 (220)
Q Consensus 194 ~~~~g 198 (220)
....+
T Consensus 161 ~~~~~ 165 (197)
T PF06247_consen 161 GDGEG 165 (197)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 54444
No 28
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.76 E-value=0.0037 Score=33.21 Aligned_cols=23 Identities=61% Similarity=1.339 Sum_probs=20.0
Q ss_pred CCCCCeEecCCCCeEEeCCCCCc
Q psy11800 171 ICLNGRCDNTLGSYRCACQPGYS 193 (220)
Q Consensus 171 ~C~~~~C~~~~~~~~C~C~~G~~ 193 (220)
.|.++.|++..++|.|.|++||.
T Consensus 7 ~C~~~~C~~~~~~~~C~C~~g~~ 29 (35)
T smart00181 7 PCSNGTCINTPGSYTCSCPPGYT 29 (35)
T ss_pred CCCCCEEECCCCCeEeECCCCCc
Confidence 37644899999999999999998
No 29
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.56 E-value=0.0032 Score=48.94 Aligned_cols=44 Identities=36% Similarity=0.737 Sum_probs=36.6
Q ss_pred CCCceeecCcCCCCCCCCCCCeEecCCCCeEEeCCCCCccCCCCC
Q psy11800 155 TGHACIDVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGG 199 (220)
Q Consensus 155 ~g~~C~~i~~C~~~~~~C~~~~C~~~~~~~~C~C~~G~~~~~~g~ 199 (220)
.+..|.++++|...++.|.+ .|.++.++|.|.|+.||.+.++++
T Consensus 180 ~~~~C~~~~~C~~~~~~c~~-~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 180 QGKICVVPDLCATLSHVCQQ-VCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred ccccCcCchhhcCCCCCccc-eEEcCCCCEEeECCCCccCCCCCC
Confidence 46678888999877766864 899999999999999999776654
No 30
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.53 E-value=0.0063 Score=32.07 Aligned_cols=23 Identities=65% Similarity=1.408 Sum_probs=20.4
Q ss_pred CCCC-CeEecCCCCeEEeCCCCCc
Q psy11800 171 ICLN-GRCDNTLGSYRCACQPGYS 193 (220)
Q Consensus 171 ~C~~-~~C~~~~~~~~C~C~~G~~ 193 (220)
.|.+ +.|++..+.|.|.|+.||.
T Consensus 7 ~C~~~~~C~~~~~~~~C~C~~g~~ 30 (36)
T cd00053 7 PCSNGGTCVNTPGSYRCVCPPGYT 30 (36)
T ss_pred CCCCCCEEecCCCCeEeECCCCCc
Confidence 4765 8999999999999999998
No 31
>KOG0994|consensus
Probab=96.24 E-value=0.016 Score=53.81 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=60.6
Q ss_pred CcccCCCCCCCCCCCCccccccCCCCCCCCCCCCccCCC-----CCCC--CCCeee---e-CCCceEe-eCCCCCccCCC
Q psy11800 20 PAVVHSTYTGLSETQTYTGLSDSLSLGVSDLNVDECYEN-----PLIC--LNGRCD---N-TLGSYRC-ACQPGYSPSPD 87 (220)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~C~~i~~C~~~-----~~~C--~~~~C~---~-~~g~~~C-~C~~g~~~~~~ 87 (220)
-|.|.++|.|..|..|-.++-+.+..|.+|+- -+|..+ |..| ..|.|. . +.| -.| .|..||.+..-
T Consensus 935 vC~C~~GY~G~RCe~CA~~~fGnP~~GGtCq~-CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG-~hCe~Ck~Gf~GdA~ 1012 (1758)
T KOG0994|consen 935 VCHCQEGYSGSRCEICADNHFGNPSEGGTCQK-CECSNNIDLYDPGACDVATGACLKCLYHTEG-DHCEHCKDGFYGDAL 1012 (1758)
T ss_pred eeecccCccccchhhhcccccCCcccCCcccc-ccccCCcCccCCCccchhhchhhhhhhcccc-cchhhccccchhHHH
Confidence 47788999999999999999988888888853 233322 2234 124332 1 222 234 58899986432
Q ss_pred CCCccC--------CCcccCCCCCCccccccccccccccc
Q psy11800 88 GGFCVD--------RDECRTPGDHDECSQKKKKKKKKKKL 119 (220)
Q Consensus 88 ~~~C~~--------~~~C~~~~~~~~C~c~~~~~~~~~~~ 119 (220)
.+.|+. ...|.-....++|.|.+.-.|.+|.+
T Consensus 1013 ~q~CqrC~Cn~LGTn~~~~CDr~tGQCpClpNv~G~~CDq 1052 (1758)
T KOG0994|consen 1013 RQNCQRCVCNFLGTNSTCHCDRFTGQCPCLPNVQGVRCDQ 1052 (1758)
T ss_pred HhhhhhheccccccCCccccccccCcCCCCcccccccccc
Confidence 333321 11233334567888888888887754
No 32
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.15 E-value=0.0086 Score=46.56 Aligned_cols=45 Identities=33% Similarity=0.538 Sum_probs=36.5
Q ss_pred CCCCCCCCCCccCCCCCCCCCCeeeeCCCceEeeCCCCCccCCCCC
Q psy11800 44 SLGVSDLNVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGG 89 (220)
Q Consensus 44 ~~g~~C~~i~~C~~~~~~C~~~~C~~~~g~~~C~C~~g~~~~~~~~ 89 (220)
..+..|.++++|...++.|. ..|.++.|+|.|.|..||++..+++
T Consensus 179 l~~~~C~~~~~C~~~~~~c~-~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 179 FQGKICVVPDLCATLSHVCQ-QVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred cccccCcCchhhcCCCCCcc-ceEEcCCCCEEeECCCCccCCCCCC
Confidence 34677989999987776675 4899999999999999999765543
No 33
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.05 E-value=0.014 Score=30.62 Aligned_cols=23 Identities=61% Similarity=1.360 Sum_probs=20.5
Q ss_pred C-CCCeeeeCCCceEeeCCCCCcc
Q psy11800 62 C-LNGRCDNTLGSYRCACQPGYSP 84 (220)
Q Consensus 62 C-~~~~C~~~~g~~~C~C~~g~~~ 84 (220)
| .++.|++..+.|.|.|+.||.+
T Consensus 8 C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 8 CSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCEEecCCCCeEeECCCCCcc
Confidence 7 5589999999999999999985
No 34
>smart00181 EGF Epidermal growth factor-like domain.
Probab=95.73 E-value=0.023 Score=30.02 Aligned_cols=23 Identities=61% Similarity=1.353 Sum_probs=19.5
Q ss_pred CCCCeeeeCCCceEeeCCCCCcc
Q psy11800 62 CLNGRCDNTLGSYRCACQPGYSP 84 (220)
Q Consensus 62 C~~~~C~~~~g~~~C~C~~g~~~ 84 (220)
|.++.|++..++|.|.|++||.+
T Consensus 8 C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 8 CSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCEEECCCCCeEeECCCCCcc
Confidence 73339999999999999999985
No 35
>KOG1226|consensus
Probab=95.40 E-value=0.2 Score=45.00 Aligned_cols=83 Identities=35% Similarity=0.842 Sum_probs=49.6
Q ss_pred Cccccccccc----cccccccccccCCC--CCC-CCceEecCCCCeEeecCCCcEeCCCCCce---eecCcCCCCC-CCC
Q psy11800 104 DECSQKKKKK----KKKKKLYHDECSQN--GMC-ANGMCINMDGSFKCQCKPGFVLSPTGHAC---IDVDECYENP-LIC 172 (220)
Q Consensus 104 ~~C~c~~~~~----~~~~~~~~~~C~~~--~~c-~~~~C~~~~~~~~C~C~~G~~~~~~g~~C---~~i~~C~~~~-~~C 172 (220)
++|.|..... |++|+.+.-.|..+ ..| .+|.|.-. +|.|.+|| .|..| .+.+.|.+.. ..|
T Consensus 525 GqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG----~CvC~~Gw----tG~~C~C~~std~C~~~~G~iC 596 (783)
T KOG1226|consen 525 GQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCECG----RCVCNPGW----TGSACNCPLSTDTCESSDGQIC 596 (783)
T ss_pred CceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeCC----cEEcCCCC----ccCCCCCCCCCccccCCCCcee
Confidence 3566655444 88888765556543 234 35666544 79999999 77777 4556665432 245
Q ss_pred CC-CeEecCCCCeEEeCCCC-CccCCCCCCCC
Q psy11800 173 LN-GRCDNTLGSYRCACQPG-YSPSPDGGFCV 202 (220)
Q Consensus 173 ~~-~~C~~~~~~~~C~C~~G-~~~~~~g~~C~ 202 (220)
.. |+|.=. +|+|... |. |.+|+
T Consensus 597 SGrG~C~Cg----~C~C~~~~~s----G~~CE 620 (783)
T KOG1226|consen 597 SGRGTCECG----RCKCTDPPYS----GEFCE 620 (783)
T ss_pred CCCceeeCC----ceEcCCCCcC----cchhh
Confidence 42 555422 3677655 76 77775
No 36
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=95.02 E-value=0.022 Score=42.30 Aligned_cols=67 Identities=34% Similarity=0.810 Sum_probs=45.7
Q ss_pred CCCCCceEecCCCCeEeecCCCcEeCCCCCceeecCcCCC---CCCCCCC-CeEecCC-----CCeEEeCCCCCccC
Q psy11800 128 GMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYE---NPLICLN-GRCDNTL-----GSYRCACQPGYSPS 195 (220)
Q Consensus 128 ~~c~~~~C~~~~~~~~C~C~~G~~~~~~g~~C~~i~~C~~---~~~~C~~-~~C~~~~-----~~~~C~C~~G~~~~ 195 (220)
..|.+|..+.....|.|.|.+||.+. .-.+|+...+|.. ....|.. +.|++.. ..|.|.|.+||.+.
T Consensus 6 T~CKNG~LiQMSNHfEC~Cnegfvl~-~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~ 81 (197)
T PF06247_consen 6 TICKNGYLIQMSNHFECKCNEGFVLK-NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILK 81 (197)
T ss_dssp ---BTEEEEEESSEEEEEESTTEEEE-ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEES
T ss_pred ccccCCEEEEccCceEEEcCCCcEEc-cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceee
Confidence 45678888888889999999999876 5678877777764 1234665 7898765 57999999999864
No 37
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=93.31 E-value=0.041 Score=22.49 Aligned_cols=13 Identities=46% Similarity=1.423 Sum_probs=9.7
Q ss_pred EEeCCCCCccCCCCCCC
Q psy11800 185 RCACQPGYSPSPDGGFC 201 (220)
Q Consensus 185 ~C~C~~G~~~~~~g~~C 201 (220)
.|.|++||+ |.+|
T Consensus 1 ~C~C~~G~~----G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWT----GPNC 13 (13)
T ss_dssp EEEE-TTEE----TTTT
T ss_pred CccCcCCCc----CCCC
Confidence 489999998 7765
No 38
>KOG1226|consensus
Probab=92.11 E-value=1.4 Score=39.94 Aligned_cols=48 Identities=21% Similarity=0.591 Sum_probs=30.0
Q ss_pred Ccccccccccccccccc--ccccCCC--CCCC-CceEecCCCCeEeecCCC-cEeCCCCCce
Q psy11800 104 DECSQKKKKKKKKKKLY--HDECSQN--GMCA-NGMCINMDGSFKCQCKPG-FVLSPTGHAC 159 (220)
Q Consensus 104 ~~C~c~~~~~~~~~~~~--~~~C~~~--~~c~-~~~C~~~~~~~~C~C~~G-~~~~~~g~~C 159 (220)
+.|.|.+||+|.+|... .+.|... ..|. .|+|.-. +|+|... | .|..|
T Consensus 566 G~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg----~C~C~~~~~----sG~~C 619 (783)
T KOG1226|consen 566 GRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECG----RCKCTDPPY----SGEFC 619 (783)
T ss_pred CcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCC----ceEcCCCCc----Ccchh
Confidence 57889999999988753 3455432 2233 2445433 5777655 7 66676
No 39
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=91.98 E-value=0.37 Score=25.09 Aligned_cols=25 Identities=44% Similarity=1.104 Sum_probs=19.0
Q ss_pred CCCC-CeEecCCCCeEEeCCCCCccCCCCCCC
Q psy11800 171 ICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC 201 (220)
Q Consensus 171 ~C~~-~~C~~~~~~~~C~C~~G~~~~~~g~~C 201 (220)
.|.+ |+|+.. ..+|.|.+||. |..|
T Consensus 7 ~C~~~G~C~~~--~g~C~C~~g~~----G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCVSP--CGRCVCDSGYT----GPDC 32 (32)
T ss_pred ccCCCCEEeCC--CCEEECCCCCc----CCCC
Confidence 4764 899876 34799999998 6654
No 40
>KOG0994|consensus
Probab=91.93 E-value=0.48 Score=44.71 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=53.0
Q ss_pred hcCCCCcccCCCCCCCCCCCCccccccCCCCCCCCC---CCCccCCCCCCCCCCeee---eCCCceEe-eCCCCCccCCC
Q psy11800 15 WASAGPAVVHSTYTGLSETQTYTGLSDSLSLGVSDL---NVDECYENPLICLNGRCD---NTLGSYRC-ACQPGYSPSPD 87 (220)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~C~---~i~~C~~~~~~C~~~~C~---~~~g~~~C-~C~~g~~~~~~ 87 (220)
...+|-|.|.++-.|-.|.+|-.|+.+.+.=. .|+ ..++|.... |.|+ +.-.++.| .|..||.+.+.
T Consensus 826 d~~tGQC~C~~g~ygrqCnqCqpG~WgFPeCr-~CqCNgHA~~Cd~~t-----GaCi~CqD~T~G~~CdrCl~GyyGdP~ 899 (1758)
T KOG0994|consen 826 DKITGQCQCRPGTYGRQCNQCQPGYWGFPECR-PCQCNGHADTCDPIT-----GACIDCQDSTTGHSCDRCLDGYYGDPR 899 (1758)
T ss_pred cccccceeeccccchhhccccCCCccCCCcCc-cccccCcccccCccc-----cccccccccccccchhhhhccccCCcc
Confidence 34567788888777777777766665322211 111 123333322 4444 44566777 59999987532
Q ss_pred ---CCCccC-----C--------CcccCC--CCCCccccccccccccccc
Q psy11800 88 ---GGFCVD-----R--------DECRTP--GDHDECSQKKKKKKKKKKL 119 (220)
Q Consensus 88 ---~~~C~~-----~--------~~C~~~--~~~~~C~c~~~~~~~~~~~ 119 (220)
+..|.. . +.|... ...-.|.|..||+|.+|+.
T Consensus 900 lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~ 949 (1758)
T KOG0994|consen 900 LGSGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEI 949 (1758)
T ss_pred cCCCCCCCCCCCCCCCccchhccccccccccccceeeecccCccccchhh
Confidence 223321 0 111111 1223588888888888764
No 41
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=89.35 E-value=0.38 Score=33.47 Aligned_cols=42 Identities=26% Similarity=0.553 Sum_probs=29.8
Q ss_pred ecCcCCCC-CCCCCCCeEecCC--CCeEEeCCCCCccCCCCCCCCcCCC
Q psy11800 161 DVDECYEN-PLICLNGRCDNTL--GSYRCACQPGYSPSPDGGFCVDRDE 206 (220)
Q Consensus 161 ~i~~C~~~-~~~C~~~~C~~~~--~~~~C~C~~G~~~~~~g~~C~~~~~ 206 (220)
++.+|.+. .+.|.||.|.... ..+.|.|..||. |..|+..+.
T Consensus 41 ~i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GYt----GeRCEh~dL 85 (139)
T PHA03099 41 AIRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYT----GIRCQHVVL 85 (139)
T ss_pred ccccCChhhCCEeECCEEEeeccCCCceeECCCCcc----cccccceee
Confidence 34455422 3457778887654 678999999999 999986654
No 42
>PHA02887 EGF-like protein; Provisional
Probab=85.04 E-value=1.1 Score=30.69 Aligned_cols=39 Identities=31% Similarity=0.800 Sum_probs=27.7
Q ss_pred cCcCCCC-CCCCCCCeEecCC--CCeEEeCCCCCccCCCCCCCCcC
Q psy11800 162 VDECYEN-PLICLNGRCDNTL--GSYRCACQPGYSPSPDGGFCVDR 204 (220)
Q Consensus 162 i~~C~~~-~~~C~~~~C~~~~--~~~~C~C~~G~~~~~~g~~C~~~ 204 (220)
+.+|.+. .+.|.||.|.... ....|.|..||. |..|+..
T Consensus 83 f~pC~~eyk~YCiHG~C~yI~dL~epsCrC~~GYt----G~RCE~v 124 (126)
T PHA02887 83 FEKCKNDFNDFCINGECMNIIDLDEKFCICNKGYT----GIRCDEV 124 (126)
T ss_pred ccccChHhhCEeeCCEEEccccCCCceeECCCCcc----cCCCCcc
Confidence 3455432 3347788887654 568899999999 8889754
No 43
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=83.31 E-value=0.95 Score=24.34 Aligned_cols=23 Identities=39% Similarity=0.781 Sum_probs=18.6
Q ss_pred C-CCCeeeeCC-CceEeeCCCCCcc
Q psy11800 62 C-LNGRCDNTL-GSYRCACQPGYSP 84 (220)
Q Consensus 62 C-~~~~C~~~~-g~~~C~C~~g~~~ 84 (220)
| .|+.|++.. |++.|.|..||+.
T Consensus 7 cP~NA~C~~~~dG~eecrCllgyk~ 31 (37)
T PF12946_consen 7 CPANAGCFRYDDGSEECRCLLGYKK 31 (37)
T ss_dssp --TTEEEEEETTSEEEEEE-TTEEE
T ss_pred CCCCcccEEcCCCCEEEEeeCCccc
Confidence 6 678999887 9999999999985
No 44
>PHA02887 EGF-like protein; Provisional
Probab=79.87 E-value=2 Score=29.50 Aligned_cols=36 Identities=33% Similarity=0.917 Sum_probs=25.8
Q ss_pred cccCCC--CCCCCceEecCC--CCeEeecCCCcEeCCCCCceee
Q psy11800 122 DECSQN--GMCANGMCINMD--GSFKCQCKPGFVLSPTGHACID 161 (220)
Q Consensus 122 ~~C~~~--~~c~~~~C~~~~--~~~~C~C~~G~~~~~~g~~C~~ 161 (220)
.+|... .-|.+|+|.-.. ..+.|.|..|| .|..|..
T Consensus 84 ~pC~~eyk~YCiHG~C~yI~dL~epsCrC~~GY----tG~RCE~ 123 (126)
T PHA02887 84 EKCKNDFNDFCINGECMNIIDLDEKFCICNKGY----TGIRCDE 123 (126)
T ss_pred cccChHhhCEeeCCEEEccccCCCceeECCCCc----ccCCCCc
Confidence 455433 557788997654 45899999999 7888754
No 45
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=78.46 E-value=1.9 Score=30.12 Aligned_cols=31 Identities=39% Similarity=0.989 Sum_probs=23.8
Q ss_pred CCCCCceEecCC--CCeEeecCCCcEeCCCCCceeec
Q psy11800 128 GMCANGMCINMD--GSFKCQCKPGFVLSPTGHACIDV 162 (220)
Q Consensus 128 ~~c~~~~C~~~~--~~~~C~C~~G~~~~~~g~~C~~i 162 (220)
.-|.||.|.-.. ..+.|.|..|| .|..|+.+
T Consensus 51 ~YClHG~C~yI~dl~~~~CrC~~GY----tGeRCEh~ 83 (139)
T PHA03099 51 GYCLHGDCIHARDIDGMYCRCSHGY----TGIRCQHV 83 (139)
T ss_pred CEeECCEEEeeccCCCceeECCCCc----ccccccce
Confidence 557778886654 67899999999 88888543
No 46
>smart00051 DSL delta serrate ligand.
Probab=66.29 E-value=13 Score=22.68 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=6.2
Q ss_pred eEeeCCCCCcc
Q psy11800 74 YRCACQPGYSP 84 (220)
Q Consensus 74 ~~C~C~~g~~~ 84 (220)
+.-.|.++|.+
T Consensus 17 ~rv~C~~~~yG 27 (63)
T smart00051 17 IRVTCDENYYG 27 (63)
T ss_pred EEeeCCCCCcC
Confidence 34456666664
No 47
>KOG1836|consensus
Probab=61.07 E-value=57 Score=33.35 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=49.3
Q ss_pred cccCCCCCCCCCCCCcccccc---CCCCCCCCCCC------CccCCCCCCCCCCeee--eCCCceEe-eCCCCCccCCCC
Q psy11800 21 AVVHSTYTGLSETQTYTGLSD---SLSLGVSDLNV------DECYENPLICLNGRCD--NTLGSYRC-ACQPGYSPSPDG 88 (220)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~---~~~~g~~C~~i------~~C~~~~~~C~~~~C~--~~~g~~~C-~C~~g~~~~~~~ 88 (220)
|.|.++|+|.+|..+..++.. .......|.+. +.|.... |.|+ ....+-.| .|..||.+....
T Consensus 697 c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~t-----G~C~C~~~t~G~~C~~C~~GfYg~~~~ 771 (1705)
T KOG1836|consen 697 CTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRT-----GQCKCKHNTFGGQCAQCVDGFYGLPDL 771 (1705)
T ss_pred ccCCCCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCC-----CceecccCCCCCchhhhcCCCCCcccc
Confidence 899999999999999777762 22222222221 2222221 2332 22222234 588888865432
Q ss_pred CC---c-----cCCCcccCC--CCCCccc-cccccccccccc
Q psy11800 89 GF---C-----VDRDECRTP--GDHDECS-QKKKKKKKKKKL 119 (220)
Q Consensus 89 ~~---C-----~~~~~C~~~--~~~~~C~-c~~~~~~~~~~~ 119 (220)
.+ | ....+|... .....|. |+.+++|.+|+.
T Consensus 772 ~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~ 813 (1705)
T KOG1836|consen 772 GTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEE 813 (1705)
T ss_pred CCCCCCccCCCCCChhhcCcCcccceecCCCCCCCccccccc
Confidence 21 2 122222221 2345677 788888877764
No 48
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=58.97 E-value=11 Score=25.59 Aligned_cols=30 Identities=47% Similarity=1.147 Sum_probs=21.2
Q ss_pred ccccCCCCCCC-CceEecCCCCeEeecCCCcE
Q psy11800 121 HDECSQNGMCA-NGMCINMDGSFKCQCKPGFV 151 (220)
Q Consensus 121 ~~~C~~~~~c~-~~~C~~~~~~~~C~C~~G~~ 151 (220)
.+.|.....|. ++.|.. .....|.|.+||+
T Consensus 77 ~d~Cd~y~~CG~~g~C~~-~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 77 KDQCDVYGFCGPNGICNS-NNSPKCSCLPGFE 107 (110)
T ss_pred ccCCCCccccCCccEeCC-CCCCceECCCCcC
Confidence 36777666664 589954 3456799999994
No 49
>KOG3516|consensus
Probab=55.57 E-value=11 Score=36.17 Aligned_cols=38 Identities=37% Similarity=1.068 Sum_probs=32.0
Q ss_pred eeecCcCCCCCCCCCC-CeEecCCCCeEEeCC-CCCccCCCCCCCC
Q psy11800 159 CIDVDECYENPLICLN-GRCDNTLGSYRCACQ-PGYSPSPDGGFCV 202 (220)
Q Consensus 159 C~~i~~C~~~~~~C~~-~~C~~~~~~~~C~C~-~G~~~~~~g~~C~ 202 (220)
|.-++.|.+++ |.| +.|..+...|.|.|. .||+ |..|.
T Consensus 542 C~i~drClPN~--CehgG~C~Qs~~~f~C~C~~TGY~----GatCH 581 (1306)
T KOG3516|consen 542 CGISDRCLPNP--CEHGGKCSQSWDDFECNCELTGYK----GATCH 581 (1306)
T ss_pred cccccccCCcc--ccCCCcccccccceeEeccccccc----ccccc
Confidence 44567888887 987 799998899999999 8998 88885
No 50
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=55.22 E-value=38 Score=19.31 Aligned_cols=16 Identities=50% Similarity=1.196 Sum_probs=11.7
Q ss_pred CeEecCCCCeEEeCCCCCcc
Q psy11800 175 GRCDNTLGSYRCACQPGYSP 194 (220)
Q Consensus 175 ~~C~~~~~~~~C~C~~G~~~ 194 (220)
+.|++. .|.|++||..
T Consensus 32 s~C~~g----~C~C~~g~~~ 47 (52)
T PF01683_consen 32 SVCVNG----RCQCPPGYVE 47 (52)
T ss_pred CEEcCC----EeECCCCCEe
Confidence 577542 5999999974
No 51
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=54.12 E-value=20 Score=20.39 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=16.7
Q ss_pred CCCCcccCCCCCCCCCCCCcccccc
Q psy11800 17 SAGPAVVHSTYTGLSETQTYTGLSD 41 (220)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (220)
..+-|.|.+++.|..+.++-.++..
T Consensus 17 ~~G~C~C~~~~~G~~C~~C~~g~~~ 41 (50)
T cd00055 17 GTGQCECKPNTTGRRCDRCAPGYYG 41 (50)
T ss_pred CCCEEeCCCcCCCCCCCCCCCCCcc
Confidence 3566777777777777766555553
No 52
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=53.19 E-value=8.4 Score=20.23 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=10.5
Q ss_pred eEEeCCCCCccCC
Q psy11800 184 YRCACQPGYSPSP 196 (220)
Q Consensus 184 ~~C~C~~G~~~~~ 196 (220)
+.|.|++||.+..
T Consensus 18 ~~C~CPeGyIlde 30 (34)
T PF09064_consen 18 GQCFCPEGYILDE 30 (34)
T ss_pred CceeCCCceEecC
Confidence 3799999999653
No 53
>KOG3512|consensus
Probab=49.35 E-value=45 Score=29.02 Aligned_cols=41 Identities=12% Similarity=-0.023 Sum_probs=24.6
Q ss_pred CCcccCCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCC
Q psy11800 19 GPAVVHSTYTGLSETQTYTGLSDSLSLGVSDLNVDECYENP 59 (220)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~C~~i~~C~~~~ 59 (220)
-.|.|.-.-.|..|.+|-.-+...+|...+-.++++|....
T Consensus 295 ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~ 335 (592)
T KOG3512|consen 295 LTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACN 335 (592)
T ss_pred eEEecccCCCCCCcccccccccCCCccccccCCCccccccc
Confidence 34555555556666666666666666666656666665543
No 54
>KOG3514|consensus
Probab=40.86 E-value=22 Score=34.05 Aligned_cols=34 Identities=32% Similarity=0.946 Sum_probs=27.6
Q ss_pred CccCCCCCCC-CCCeeeeCCCceEeeCCC-CCccCCCCCCcc
Q psy11800 53 DECYENPLIC-LNGRCDNTLGSYRCACQP-GYSPSPDGGFCV 92 (220)
Q Consensus 53 ~~C~~~~~~C-~~~~C~~~~g~~~C~C~~-g~~~~~~~~~C~ 92 (220)
..|.++| | +++.|....++|.|.|.. +|. |++|+
T Consensus 624 ~~C~~nP--C~N~g~C~egwNrfiCDCs~T~~~----G~~Ce 659 (1591)
T KOG3514|consen 624 KICESNP--CQNGGKCSEGWNRFICDCSGTGFE----GRTCE 659 (1591)
T ss_pred cccCCCc--ccCCCCccccccccccccccCccc----Ccccc
Confidence 4688888 9 669999999999999976 666 56665
No 55
>KOG3516|consensus
Probab=39.35 E-value=28 Score=33.70 Aligned_cols=34 Identities=32% Similarity=0.905 Sum_probs=27.8
Q ss_pred CCCCCccCCCCCCC-CCCeeeeCCCceEeeCC-CCCcc
Q psy11800 49 DLNVDECYENPLIC-LNGRCDNTLGSYRCACQ-PGYSP 84 (220)
Q Consensus 49 C~~i~~C~~~~~~C-~~~~C~~~~g~~~C~C~-~g~~~ 84 (220)
|.-++.|.+++ | ..+.|......|.|.|. .||.+
T Consensus 542 C~i~drClPN~--CehgG~C~Qs~~~f~C~C~~TGY~G 577 (1306)
T KOG3516|consen 542 CGISDRCLPNP--CEHGGKCSQSWDDFECNCELTGYKG 577 (1306)
T ss_pred cccccccCCcc--ccCCCcccccccceeEecccccccc
Confidence 55567888887 9 55899988888999998 79984
No 56
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=39.19 E-value=19 Score=24.27 Aligned_cols=31 Identities=26% Similarity=0.732 Sum_probs=20.6
Q ss_pred CcCCCCCCCCC-CCeEecCC-----CCeEEeCCCCCc
Q psy11800 163 DECYENPLICL-NGRCDNTL-----GSYRCACQPGYS 193 (220)
Q Consensus 163 ~~C~~~~~~C~-~~~C~~~~-----~~~~C~C~~G~~ 193 (220)
+.|......|. ||.|++.- .=|.|.|.+.+.
T Consensus 6 ~aC~~~Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~ 42 (103)
T PF12955_consen 6 DACENATNNCSGHGSCVKKYGSGGGDCFACKCKPTVV 42 (103)
T ss_pred HHHHHhccCCCCCceEeeccCCCccceEEEEeecccc
Confidence 44555555686 58898762 348999988543
No 57
>KOG1836|consensus
Probab=36.72 E-value=68 Score=32.88 Aligned_cols=53 Identities=38% Similarity=0.787 Sum_probs=29.7
Q ss_pred CeEe-ecCCCcEeCCCCCceeecCcCCCCCCCCCC-CeEecCC--CCeEEe-CCCCCccCCCCCCCC
Q psy11800 141 SFKC-QCKPGFVLSPTGHACIDVDECYENPLICLN-GRCDNTL--GSYRCA-CQPGYSPSPDGGFCV 202 (220)
Q Consensus 141 ~~~C-~C~~G~~~~~~g~~C~~i~~C~~~~~~C~~-~~C~~~~--~~~~C~-C~~G~~~~~~g~~C~ 202 (220)
+-+| +|..||.+.+....- ..|..=+ |.+ +.|..+. ....|+ |++||+ |..|+
T Consensus 755 G~~C~~C~~GfYg~~~~~~~---~dC~~C~--Cp~~~~~~~~~~~~~~iCk~Cp~gyt----G~rCe 812 (1705)
T KOG1836|consen 755 GGQCAQCVDGFYGLPDLGTS---GDCQPCP--CPNGGACGQTPEILEVVCKNCPPGYT----GLRCE 812 (1705)
T ss_pred CCchhhhcCCCCCccccCCC---CCCccCC--CCCChhhcCcCcccceecCCCCCCCc----ccccc
Confidence 3456 678888544322211 1154322 554 4555443 456788 999998 77665
No 58
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=34.45 E-value=30 Score=20.00 Aligned_cols=21 Identities=38% Similarity=1.058 Sum_probs=14.4
Q ss_pred eecCCCcEeCCCCCceeecCcC
Q psy11800 144 CQCKPGFVLSPTGHACIDVDEC 165 (220)
Q Consensus 144 C~C~~G~~~~~~g~~C~~i~~C 165 (220)
|.|++||.+... ..|+...+|
T Consensus 35 C~C~~G~v~~~~-~~CV~~~~C 55 (55)
T PF01826_consen 35 CFCPPGYVRNDN-GRCVPPSEC 55 (55)
T ss_dssp EEETTTEEEETT-SEEEEGGGC
T ss_pred CCCCCCeeEcCC-CCEEcHHHC
Confidence 889999987533 567655443
No 59
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=28.29 E-value=71 Score=17.78 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=15.4
Q ss_pred CCCcccCCCCCCCCCCCCccccc
Q psy11800 18 AGPAVVHSTYTGLSETQTYTGLS 40 (220)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~ 40 (220)
.+.|.|.+.+.|..+.++-.++-
T Consensus 17 ~G~C~C~~~~~G~~C~~C~~g~~ 39 (46)
T smart00180 17 TGQCECKPNVTGRRCDRCAPGYY 39 (46)
T ss_pred CCEEECCCCCCCCCCCcCCCCcC
Confidence 56777777777777766655544
No 60
>KOG1215|consensus
Probab=28.12 E-value=1.1e+02 Score=29.05 Aligned_cols=60 Identities=28% Similarity=0.615 Sum_probs=38.1
Q ss_pred ecCCCCeEeecCCCcEeCCCCCceeecCcCCCCCCCCCCCeEe-cCCCCeEEeCCCCCccCCCC
Q psy11800 136 INMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCD-NTLGSYRCACQPGYSPSPDG 198 (220)
Q Consensus 136 ~~~~~~~~C~C~~G~~~~~~g~~C~~i~~C~~~~~~C~~~~C~-~~~~~~~C~C~~G~~~~~~g 198 (220)
........+.|..++.+...... ....|...+..|.+ .|. +.++.|.|.|..||.+..++
T Consensus 340 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~Csq-~C~~~~p~~~~c~c~~g~~~~~~~ 400 (877)
T KOG1215|consen 340 PDVSVGPRCDCMGAKVLPLGART--DSNPCESDNGGCSQ-LCVPNSPGTFKCACSPGYELRLDK 400 (877)
T ss_pred CccccCCcccCCccceecccccc--cCCcccccCCccce-eccCCCCCceeEecCCCcEeccCC
Confidence 33444567778777765433332 22345545555654 777 46889999999999876554
No 61
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=23.69 E-value=28 Score=19.61 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=16.2
Q ss_pred CCCCcccCCCCCCCCCCCCccccc
Q psy11800 17 SAGPAVVHSTYTGLSETQTYTGLS 40 (220)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~ 40 (220)
..+.|.|.+.|.|..|.++-.++-
T Consensus 16 ~~G~C~C~~~~~G~~C~~C~~g~~ 39 (49)
T PF00053_consen 16 STGQCVCKPGTTGPRCDQCKPGYF 39 (49)
T ss_dssp TCEEESBSTTEESTTS-EE-TTEE
T ss_pred CCCEEeccccccCCcCcCCCCccc
Confidence 456778888888888877766655
No 62
>KOG3514|consensus
Probab=22.02 E-value=65 Score=31.20 Aligned_cols=34 Identities=35% Similarity=1.002 Sum_probs=28.2
Q ss_pred cCCCCCCCCCC-CeEecCCCCeEEeCC-CCCccCCCCCCCCc
Q psy11800 164 ECYENPLICLN-GRCDNTLGSYRCACQ-PGYSPSPDGGFCVD 203 (220)
Q Consensus 164 ~C~~~~~~C~~-~~C~~~~~~~~C~C~-~G~~~~~~g~~C~~ 203 (220)
.|..+| |.| |.|......|.|.|. .+|. |+.|+.
T Consensus 625 ~C~~nP--C~N~g~C~egwNrfiCDCs~T~~~----G~~Cer 660 (1591)
T KOG3514|consen 625 ICESNP--CQNGGKCSEGWNRFICDCSGTGFE----GRTCER 660 (1591)
T ss_pred ccCCCc--ccCCCCccccccccccccccCccc----Cccccc
Confidence 577777 987 899999999999997 4676 888964
Done!