RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11800
(220 letters)
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 127 bits (322), Expect = 1e-37
Identities = 44/160 (27%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHD------- 104
V+EC +P C++G C NT GSY C C P + +P CVD D
Sbjct: 3 VNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGD 61
Query: 105 ---ECSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACID 161
K + + C GF +P D
Sbjct: 62 TACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILED 121
Query: 162 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFC 201
+DEC E P +C G+C NT GS++C C GY + D C
Sbjct: 122 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 85.9 bits (213), Expect = 2e-21
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC C +G C+N GS+ C C P F L+PT C+D L+ R
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG----NCYLDIRPRGDN 59
Query: 182 GSYRCACQPGYSPSPDGGFCVDRDECRTPGG 212
G C+ + G S C TP
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCE 90
Score = 55.1 bits (133), Expect = 6e-10
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECR 208
DV+EC + C++G C NT GSY C C P + +P CVD
Sbjct: 2 DVNECLDPT-TCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGN 48
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 115 bits (289), Expect = 6e-33
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 7/151 (4%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKK 111
+DEC +P C+NG C N+ GS+ C C + P C++ + + +
Sbjct: 4 IDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCW--QTVIDGRCE 59
Query: 112 KKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLI 171
L CS G C G+ G C D+DEC P +
Sbjct: 60 ININGATLKSQCCSSLGAAWG--SPCTLCQVDPICGKGYSRI-KGTQCEDIDECEVFPGV 116
Query: 172 CLNGRCDNTLGSYRCACQPGYSPSPDGGFCV 202
C NG C NT GS++C C G + G C+
Sbjct: 117 CKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 70.8 bits (174), Expect = 6e-16
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 26/114 (22%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCD--- 178
DEC + C NG+C N GSF C+C L PT CI+ + + +GRC+
Sbjct: 5 DECESSP-CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVI-DGRCEINI 62
Query: 179 --------------------NTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGG 212
TL C GYS G C D DEC G
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYS-RIKGTQCEDIDECEVFPG 115
Score = 55.4 bits (134), Expect = 3e-10
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECR 208
D+DEC +P C+NG C N+ GS+ C C + P C++ +
Sbjct: 3 DIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGT 48
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 98.7 bits (246), Expect = 2e-26
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 43/171 (25%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSP-----SPDGGFCVDRDECRTPGDHDE 105
+ C + + + + C C PG+S + C D +EC T
Sbjct: 1 DSRGCARW-----CPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVS- 54
Query: 106 CSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLS--------PTGH 157
C C N +GS+ C C PG+ + +
Sbjct: 55 ------------------CG-----KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESEN 91
Query: 158 ACIDVDECYENPLIC-LNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
C DVDEC C + C NT+GSY C C+PG+ P C
Sbjct: 92 TCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 71.4 bits (175), Expect = 3e-16
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 21/104 (20%)
Query: 122 DECSQNGMC-ANGMCINMDGSFKCQCKPGF-----VLSPTGHACIDVDECYENPLIC--L 173
C++ C + C+N + C+C PGF +++ C D++EC +
Sbjct: 3 RGCARW--CPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGK 57
Query: 174 NGRCDNTLGSYRCACQPGYSPS--------PDGGFCVDRDECRT 209
C NT GSY C C PGY P C D DEC +
Sbjct: 58 FSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101
Score = 37.9 bits (88), Expect = 6e-04
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSP-----SPDGGFCVDRDECRTPGG 212
D C + + + + C C PG+S + C D +EC T
Sbjct: 1 DSRGCARW-----CPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSK 52
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 96.2 bits (240), Expect = 2e-26
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 122 DECS-QNGMCANGMCINMDGSFKCQCKPGFVLSPT-GHACIDVDECYENPLICLNGRCDN 179
DEC +C G C+N G F+C+C G+ C+D+DEC +PL+C G C N
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHN 63
Query: 180 TLGSYRCACQPGYSPSPDGGFCV 202
T GSYRC C PG+ SP+ C+
Sbjct: 64 TEGSYRCECPPGHQLSPNISACI 86
Score = 86.2 bits (214), Expect = 2e-22
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 27/110 (24%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSP-DGGFCVDRDECRTPGDHDECSQKK 110
+DEC +P +C G+C NT G + C C GY C+D DEC+
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRD---------- 52
Query: 111 KKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACI 160
+C G+C N +GS++C+C PG LSP ACI
Sbjct: 53 ----------------PLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 60.0 bits (146), Expect = 2e-12
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSP-DGGFCVDRDECRTPGG 212
D+DEC +P +C G+C NT G + C C GY C+D DEC+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPL 54
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 89.6 bits (223), Expect = 8e-24
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 122 DECSQ-NGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNT 180
DECS +C +C N+ G F+C+C G+ + +C D+DEC EN C C N
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENM--C-AQLCVNY 60
Query: 181 LGSYRCAC--QPGYSPSPDGGFCVD 203
G Y C C + G+ + D C
Sbjct: 61 PGGYTCYCDGKKGFKLAQDQKSCEV 85
Score = 81.2 bits (201), Expect = 2e-20
Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 31/113 (27%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKK 111
VDEC P IC C N G + C C GY + C D DEC + C+Q
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE----NMCAQ--- 55
Query: 112 KKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQC--KPGFVLSPTGHACIDV 162
+C+N G + C C K GF L+ +C V
Sbjct: 56 ----------------------LCVNYPGGYTCYCDGKKGFKLAQDQKSCEVV 86
Score = 63.8 bits (156), Expect = 6e-14
Identities = 20/49 (40%), Positives = 22/49 (44%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRT 209
DVDEC P IC C N G + C C GY + C D DEC
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE 50
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 87.3 bits (217), Expect = 6e-23
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
DEC + +C +G CIN DGS++C+C G++L G+ C+D DEC C NG C N +
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGN-PCGNGTCKNVI 62
Query: 182 GSYRCACQPGYSPSPDG 198
G + C C+ G+ P P
Sbjct: 63 GGFECTCEEGFEPGPMM 79
Score = 72.6 bits (179), Expect = 2e-17
Identities = 37/106 (34%), Positives = 45/106 (42%), Gaps = 30/106 (28%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKK 111
+DEC + P +C +G+C NT GSYRC C GY G CVD DEC
Sbjct: 5 MDEC-KEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDEC-------------- 47
Query: 112 KKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGH 157
S C NG C N+ G F+C C+ GF P
Sbjct: 48 -------------SVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMT 80
Score = 59.1 bits (144), Expect = 3e-12
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 158 ACIDVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGG 212
+ +D+DEC + P +C +G+C NT GSYRC C GY G CVD DEC
Sbjct: 1 SAVDMDEC-KEPDVCKHGQCINTDGSYRCECPFGY--ILAGNECVDTDECSVGNP 52
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 87.8 bits (218), Expect = 9e-23
Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 34/138 (24%)
Query: 64 NGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDE 123
+ + + Y + +EC
Sbjct: 3 HHHHHHPMSDYDIPTTENL----YFQGAMGTNECLD------------------------ 34
Query: 124 CSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGS 183
NG C + +C ++ ++C C GF L C D+DEC ++P C + C N G
Sbjct: 35 --NNGGC-SYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDEC-QDPDTC-SQLCVNLEGG 88
Query: 184 YRCACQPGYSPSPDGGFC 201
Y+C C+ G+ P C
Sbjct: 89 YKCQCEEGFQLDPHTKAC 106
Score = 72.7 bits (179), Expect = 5e-17
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 132 NGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGSYRCACQPG 191
+ + + + +EC +N C + C++ Y C C G
Sbjct: 3 HHHHHHPMSDYDIPTTENL----YFQGAMGTNECLDNNGGC-SYVCNDLKIGYECLCPDG 57
Query: 192 YSPSPDGGFCVDRDECRTPGG 212
+ C D DEC+ P
Sbjct: 58 FQLVAQRR-CEDIDECQDPDT 77
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 81.6 bits (202), Expect = 2e-20
Identities = 34/148 (22%), Positives = 51/148 (34%), Gaps = 36/148 (24%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKK 111
VD C+ C SY C C G++P P + C+ + C
Sbjct: 4 VDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIPH-----EPHRCQMFCNQTACPA--- 53
Query: 112 KKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLI 171
+ + C+C G++L G C D+DEC EN
Sbjct: 54 -----------------------DCDPNTQASCECPEGYILDD-GFICTDIDEC-ENGGF 88
Query: 172 CLNGRCDNTLGSYRCACQPGYSPSPDGG 199
C +G C N G++ C C P + + G
Sbjct: 89 C-SGVCHNLPGTFECICGPDSALAGQIG 115
Score = 61.6 bits (150), Expect = 1e-12
Identities = 25/92 (27%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPT-GHACIDVDECYENPLICLNGRCDNT 180
D C + C S+ C C GF P H C P C +
Sbjct: 5 DPCFRAN-CEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC------DP 57
Query: 181 LGSYRCACQPGYSPSPDGGFCVDRDECRTPGG 212
C C GY DG C D DEC G
Sbjct: 58 NTQASCECPEGYILD-DGFICTDIDECENGGF 88
Score = 42.0 bits (99), Expect = 2e-05
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGF-CVDRDEC 207
VD C+ C SY C C G++P P C
Sbjct: 3 PVDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQ 48
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 80.0 bits (198), Expect = 2e-19
Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 46/162 (28%)
Query: 51 NVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQK 109
+VDEC C + G+C NTLGS+ C C GY+ G C + D
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRC----------EID----- 44
Query: 110 KKKKKKKKKLYHDECSQNGMCANG-MCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYE 167
+EC N C N C++ G F+C C PG+ G C ++ DEC
Sbjct: 45 -----------VNECVSN-PCQNDATCLDQIGEFQCICMPGY----EGVHCEVNTDECAS 88
Query: 168 NPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC-VDRDEC 207
+P CL+ GRC + + ++C C G++ G C VD
Sbjct: 89 SP--CLHNGRCLDKINEFQCECPTGFT----GHLCQVDLHHI 124
Score = 63.0 bits (154), Expect = 4e-13
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 42/132 (31%)
Query: 49 DLNVDECYENPLICLNG-RCDNTLGSYRCACQPGYSPSPDGGFC-VDRDECRTPGDHDEC 106
+++V+EC NP C N C + +G ++C C PGY G C V+ DEC
Sbjct: 42 EIDVNECVSNP--CQNDATCLDQIGEFQCICMPGYE----GVHCEVNTDEC--------- 86
Query: 107 SQKKKKKKKKKKLYHDECSQNGMCAN-GMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDE 164
+ C + G C++ F+C+C GF TGH C +D+
Sbjct: 87 -------------------ASSPCLHNGRCLDKINEFQCECPTGF----TGHLCQVDLHH 123
Query: 165 CYENPLICLNGR 176
+ + N R
Sbjct: 124 ILDAQKMVWNHR 135
Score = 43.0 bits (102), Expect = 9e-06
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 158 ACIDVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC-VDRDEC 207
+ DVDEC C + G+C NTLGS+ C C GY+ G C +D +EC
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNEC 48
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 72.0 bits (175), Expect = 7e-16
Identities = 28/173 (16%), Positives = 43/173 (24%), Gaps = 27/173 (15%)
Query: 61 ICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKK--------- 111
IC NG+ + C C G C + +EC C + +
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHL-SENTCEEXNECXXETLGXACGEFGQCIENPDPAQ 70
Query: 112 ---------------KKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTG 156
+ + ++ S C C G V +P
Sbjct: 71 VNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPED 130
Query: 157 HA-CIDVDECYENPLICL-NGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
C E N C N G Y C C G++ + C+
Sbjct: 131 EXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183
Score = 52.3 bits (124), Expect = 1e-08
Identities = 18/136 (13%), Positives = 34/136 (25%), Gaps = 18/136 (13%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQ-- 108
+ C+ + Y C C GY+ D + +
Sbjct: 51 TLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYL 110
Query: 109 ----------------KKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVL 152
+ + C N +C N++G + CQC GF
Sbjct: 111 SEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Query: 153 SPTGHACIDVDECYEN 168
+ C+ + +
Sbjct: 171 DXEXNVCLGPHHHHHH 186
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 70.1 bits (172), Expect = 1e-15
Identities = 38/167 (22%), Positives = 55/167 (32%), Gaps = 41/167 (24%)
Query: 53 DECYENPLICLN-GRCDNTL--GSYRCACQPGYSPSPDGGFC-VDRDEC---RTPGDHDE 105
D C NP C N G C L GS+ C C G++ C + P
Sbjct: 1 DICDPNP--CENGGICLPGLADGSFSCECPDGFT----DPNCSSVVEVASDEEEPTSAGP 54
Query: 106 CSQKKKKKKKKKKLYHDECSQNGMC--ANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDV 162
C+ + C G C + + + C+C GF G C ++
Sbjct: 55 CTP-------------NPCHNGGTCEISEAYRGDTFIGYVCKCPRGF----NGIHCQHNI 97
Query: 163 DECYENPLICLNG-RCDNTLGSYRCACQPGYSPSPDGGFC-VDRDEC 207
+EC P C NG C + + +Y C C + G C
Sbjct: 98 NECEVEP--CKNGGICTDLVANYSCECPGEFM----GRNCQYKGGGH 138
Score = 38.5 bits (90), Expect = 4e-04
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 49 DLNVDECYENPLICLNG-RCDNTLGSYRCACQPGYSPSPDGGFC-VDRDEC 97
N++EC P C NG C + + +Y C C + G C
Sbjct: 94 QHNINECEVEP--CKNGGICTDLVANYSCECPGEFM----GRNCQYKGGGH 138
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 64.3 bits (157), Expect = 8e-14
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+ + C +G CI+ GSF C C+ G+ + C + C C +
Sbjct: 15 EHPCASLCCGHGTCIDGIGSFSCDCRSGWEG-RFCQREVSFLNCSLDNGGC-THYCLEEV 72
Query: 182 GSYRCACQPGYSPSPDGGFCVDRDEC 207
G RC+C PGY D C +
Sbjct: 73 GWRRCSCAPGYKLGDDLLQCHPAVKF 98
Score = 53.6 bits (129), Expect = 8e-10
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 29/118 (24%)
Query: 48 SDLNVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECS 107
L ++ + C +G C + +GS+ C C+ G+ V C
Sbjct: 10 LVLPLEHPCASL-CCGHGTCIDGIGSFSCDCRSGWE-GRFCQREVSFLNCS--------- 58
Query: 108 QKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDEC 165
NG C C+ G +C C PG+ L C +
Sbjct: 59 -----------------LDNGGC-THYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 65.9 bits (161), Expect = 1e-13
Identities = 29/162 (17%), Positives = 41/162 (25%), Gaps = 42/162 (25%)
Query: 49 DLNVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECS 107
+ D+C +P C N G+C + LG Y C C G+ G + E
Sbjct: 39 YKDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFE-----------------GKNCELF 79
Query: 108 QKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECY 166
CS + + C S C C G+ T
Sbjct: 80 ------------TRKLCSLDNGDCDQFCHEEQNSVVCSCARGY----TLADNGKACIPTG 123
Query: 167 ENPLICLNGR-CDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
P C + G +PD D
Sbjct: 124 PYP--CGKQTLERRKRSVAQATSSSGE--APDSITWKPYDAA 161
Score = 43.2 bits (102), Expect = 1e-05
Identities = 13/123 (10%), Positives = 23/123 (18%), Gaps = 35/123 (28%)
Query: 53 DECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKK 112
C + C + C S C+C GY+ + +
Sbjct: 82 KLCSLDNGDC-DQFCHEEQNSVVCSCARGYT-----------------LADNGKAC---- 119
Query: 113 KKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLIC 172
+ + G +P D +P
Sbjct: 120 ---------IPTGPYPCGKQTLERRKRSVAQATSSSGE--APDSITWKPYDAADLDP--T 166
Query: 173 LNG 175
N
Sbjct: 167 ENP 169
Score = 40.9 bits (96), Expect = 1e-04
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 130 CANGMCINMDG-SFKCQCKPGFVLSPTGHACIDVDECYENPLICLN-GRCDNTLGSYRCA 187
C C + + D D+C +P C N G+C + LG Y C
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNE---FWNKYKDGDQCETSP--CQNQGKCKDGLGEYTCT 66
Query: 188 CQPGYS 193
C G+
Sbjct: 67 CLEGFE 72
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 64.9 bits (157), Expect = 2e-12
Identities = 34/155 (21%), Positives = 48/155 (30%), Gaps = 30/155 (19%)
Query: 53 DECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKK 112
+EC +N C + C++ Y C C G+ C D DEC+ P CSQ
Sbjct: 1 NECLDNNGGC-SHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPD---TCSQL--- 52
Query: 113 KKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLIC 172
C+N++G +KCQC+ GF L P AC V
Sbjct: 53 ----------------------CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTN 90
Query: 173 LNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
+ TL +
Sbjct: 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 125
Score = 43.3 bits (101), Expect = 3e-05
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 163 DECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGG 212
+EC +N C + C++ Y C C G+ C D DEC+ P
Sbjct: 1 NECLDNNGGC-SHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDT 48
Score = 28.7 bits (63), Expect = 1.7
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 61 ICLNG-RCDNTLGSYRCACQPGYSPSPDGGFCV 92
+CL + + + CAC G + D C+
Sbjct: 365 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
Score = 28.7 bits (63), Expect = 1.7
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 171 ICLNG-RCDNTLGSYRCACQPGYSPSPDGGFCV 202
+CL + + + CAC G + D C+
Sbjct: 365 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
Score = 26.3 bits (57), Expect = 8.0
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 121 HDECSQNGMCANGMCIN------MDGSFKCQCKPGFVLSPTGHACI 160
NG C +C+ F C C G +L+ +C+
Sbjct: 353 ERTTLSNGGC-QYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 64.4 bits (156), Expect = 2e-12
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 122 DECSQ-NGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNT 180
+ C+ NG CA C + G+ +C C G+ L+ G C DV+EC E + C N+
Sbjct: 4 ENCNVNNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYC--SQGCTNS 60
Query: 181 LGSYRCACQPGYSPSPDGGFCVDRDEC 207
G+++C C+ GY PD C
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPE 87
Score = 59.4 bits (143), Expect = 1e-10
Identities = 29/145 (20%), Positives = 43/145 (29%), Gaps = 29/145 (20%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKK 111
+ C N C +C G+ +C C GY + DG C D +EC G CSQ
Sbjct: 3 EENCNVNNGGC-AQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGY---CSQ--- 55
Query: 112 KKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLI 171
C N +G+F+C C+ G+ L P +C +
Sbjct: 56 ----------------------GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFA 93
Query: 172 CLNGRCDNTLGSYRCACQPGYSPSP 196
+
Sbjct: 94 NRIDIRQVLPHRSEYTLLLNNLENA 118
Score = 47.5 bits (112), Expect = 1e-06
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 161 DVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGG 212
+ C N C +C G+ +C C GY + DG C D +EC G
Sbjct: 2 GEENCNVNNGGC-AQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGY 52
Score = 33.6 bits (76), Expect = 0.044
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKK 110
+V+EC E + C N+ G+++C C+ GY PD C + ++
Sbjct: 43 DVNECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQ 100
Query: 111 KKKKKKKKLYHDECSQNGMCANGMCINMDGSF 142
+ + +N + + +
Sbjct: 101 VLPHRSEYTLLLNNLENAIALDFHHRRELVFW 132
Score = 32.8 bits (74), Expect = 0.079
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 27 YTGLSETQTYTGLSDSLSLGVSDLNVDECYENPLICLNGRCD----NTLGSYRCACQPGY 82
+TG ++ L + + +N NG C + +Y CAC G+
Sbjct: 317 FTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGF 376
Query: 83 SPSPDGGFCV 92
+ C
Sbjct: 377 R-KINSHACA 385
Score = 30.1 bits (67), Expect = 0.53
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 120 YHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACI 160
+ NG C +C+ ++ C C GF HAC
Sbjct: 347 KNRCGDNNGGC-THLCLPSGQNYTCACPTGFRKI-NSHACA 385
Score = 27.0 bits (59), Expect = 6.0
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 165 CYENPLICLNGRCD----NTLGSYRCACQPGYSPSPDGGFCV 202
+N NG C + +Y CAC G+ + C
Sbjct: 345 AGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR-KINSHACA 385
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 59.7 bits (145), Expect = 8e-12
Identities = 27/138 (19%), Positives = 39/138 (28%), Gaps = 40/138 (28%)
Query: 49 DLNVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECS 107
++ D+C NP CLN G C + + SY C CQ G+ G C
Sbjct: 45 YVDGDQCEPNP--CLNGGLCKDDINSYECWCQVGFE----GKNC---------------- 82
Query: 108 QKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECY 166
+L +NG C D C C G+
Sbjct: 83 ----------ELDATCNIKNGRCKQFCKTGADSKVLCSCTTGY----RLAPDQKSCKPAV 128
Query: 167 ENPLICLNGRCDNTLGSY 184
P C ++ +
Sbjct: 129 PFP--CGRVSVSHSPTTL 144
Score = 56.6 bits (137), Expect = 1e-10
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLNGRCDNT 180
D+C N G+C + S++C C+ GF G C +D +N C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGF----EGKNCELDATCNIKNGR-CKQFCKTGA 103
Query: 181 LGSYRCACQPGYSPSPDGGFC-VDRDEC 207
C+C GY
Sbjct: 104 DSKVLCSCTTGYR----LAPDQKSCKPA 127
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 55.8 bits (135), Expect = 2e-10
Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 17/93 (18%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLNGRC--- 177
D+C+ + G C + S+ C C P F G C D+ NG C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAF----EGRNCETHKDDQLICV--NENGGCEQY 101
Query: 178 --DNTLGSYRCACQPGYSPSPDGGFC-VDRDEC 207
D+T C C GYS V
Sbjct: 102 CSDHTGTKRSCRCHEGYS----LLADGVSCTPT 130
Score = 51.6 bits (124), Expect = 9e-09
Identities = 26/130 (20%), Positives = 39/130 (30%), Gaps = 38/130 (29%)
Query: 51 NVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC-VDRDECRTPGDHDECSQ 108
+ D+C +P C N G C + L SY C C P + G C +D+
Sbjct: 46 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFE----GRNCETHKDDQLI--------- 90
Query: 109 KKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYE 167
+NG C + C+C G+ + A + E
Sbjct: 91 -------------CVN-ENGGCEQYCSDHTGTKRSCRCHEGY----SLLADGVSCTPTVE 132
Query: 168 NPLICLNGRC 177
P C
Sbjct: 133 YP--CGKIPI 140
Score = 31.9 bits (73), Expect = 0.071
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 12/55 (21%)
Query: 49 DLNVDECYENPLICLNGRC-----DNTLGSYRCACQPGYSPSPDGGFC-VDRDEC 97
+ + D+ NG C D+T C C GYS V
Sbjct: 82 ETHKDDQLICV--NENGGCEQYCSDHTGTKRSCRCHEGYS----LLADGVSCTPT 130
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 56.9 bits (137), Expect = 8e-10
Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 20/109 (18%)
Query: 122 DECSQNGMCANGMCINM-DGSFKCQ-CKPGFVLSPTGHACIDVDECYENPLICLNG---- 175
D C N C + DGS+ C C GF G C D+DEC P IC +
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGF--LGNGTHCEDLDECALVPDICFSTSKVP 61
Query: 176 RCDNTLGSYRC-ACQPGYS-----------PSPDGGFCVDRDECRTPGG 212
RC NT + C C P Y + C + C+
Sbjct: 62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTH 110
Score = 56.9 bits (137), Expect = 8e-10
Identities = 40/179 (22%), Positives = 53/179 (29%), Gaps = 47/179 (26%)
Query: 52 VDECYENPLICLNG-RCDNT-LGSYRC-ACQPGYSPSPDGGFCVDRDECRTPGDHDECSQ 108
D C NP C G +C + GS+ C C G+ +G C D DEC
Sbjct: 3 PDGCLSNP--CFPGAQCSSFPDGSWSCGFCPVGFLG--NGTHCEDLDEC----------- 47
Query: 109 KKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKC-QCKPGFV-----------LSPTG 156
L D C C+N F C C P +
Sbjct: 48 ---------ALVPDICFSTSKVPR--CVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEK 96
Query: 157 HACIDVDECYENPLIC-LNGRCDN----TLGSYRCACQPGYSPSPDGGFCVDRDECRTP 210
C + C + C + C + Y+C CQ GY+ D D P
Sbjct: 97 QVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYA-GDGLICGEDSDLDGWP 154
Score = 51.6 bits (123), Expect = 5e-08
Identities = 31/174 (17%), Positives = 53/174 (30%), Gaps = 20/174 (11%)
Query: 46 GVSDLNVDECYENPLICLNG----RCDNTLGSYRC-ACQPGYSPSPDGGFCVDRDEC--R 98
G ++DEC P IC + RC NT + C C P Y + G ++ + +
Sbjct: 38 GTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQ 97
Query: 99 TPGDHDECSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFV-LSPTGH 157
+ C K C ++ C + D +KC+C+ G+
Sbjct: 98 VCEPENPCKDKT-----------HNCHKHAECIY-LGHFSDPMYKCECQTGYAGDGLICG 145
Query: 158 ACIDVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPG 211
D+D L+C + + D D +
Sbjct: 146 EDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDN 199
Score = 36.1 bits (83), Expect = 0.007
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 161 DVDECYENPLICLNG-RCDNT-LGSYRC-ACQPGYSPSPDGGFCVDRDECRT 209
D D C NP C G +C + GS+ C C G+ +G C D DEC
Sbjct: 2 DPDGCLSNP--CFPGAQCSSFPDGSWSCGFCPVGF--LGNGTHCEDLDECAL 49
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 53.1 bits (128), Expect = 2e-09
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLNGRCDNT 180
D+C + G C + G + C C GF G C + + + C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCHEE 98
Query: 181 LGSYRCACQPGYSPSPDGGFC-VDRDEC 207
S C+C GY+
Sbjct: 99 QNSVVCSCARGYT----LADNGKACIPT 122
Score = 51.5 bits (124), Expect = 8e-09
Identities = 28/130 (21%), Positives = 38/130 (29%), Gaps = 41/130 (31%)
Query: 49 DLNVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC-VDRDECRTPGDHDEC 106
+ D+C +P C N G+C + LG Y C C G+ G C + + C
Sbjct: 39 YKDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKL--------C 84
Query: 107 SQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDEC 165
S NG C + C S C C G+ T
Sbjct: 85 S-----------------LDNGDC-DQFCHEEQNSVVCSCARGY----TLADNGKACIPT 122
Query: 166 YENPLICLNG 175
P C
Sbjct: 123 GPYP--CGKQ 130
Score = 43.8 bits (104), Expect = 4e-06
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 132 NGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLN-GRCDNTLGSYRCACQ 189
D D+C +P C N G+C + LG Y C C
Sbjct: 15 ETCSYEEAREVFEDSDKTN----EFWNKYKDGDQCETSP--CQNQGKCKDGLGEYTCTCL 68
Query: 190 PGYS 193
G+
Sbjct: 69 EGFE 72
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 50.8 bits (122), Expect = 2e-08
Identities = 34/157 (21%), Positives = 51/157 (32%), Gaps = 41/157 (26%)
Query: 53 DECYENPLICLNGRCDNTLGSYRCACQPGY------------SPSPDGGFCVDRDECR-T 99
C + CD + C G+ SP G C +CR
Sbjct: 32 KFCRPRDDFFGHYACD---QNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQ 88
Query: 100 PGDH-DECSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHA 158
G C D+C + C +G+C ++C C+ + G
Sbjct: 89 YGWQGLYC---------------DKCIPHPGCVHGICNE---PWQCLCETNW----GGQL 126
Query: 159 C-IDVDECYENPLICLNGRCDNT-LGSYRCACQPGYS 193
C D++ C + G C NT Y+C+C GYS
Sbjct: 127 CDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYS 163
Score = 38.5 bits (90), Expect = 5e-04
Identities = 31/165 (18%), Positives = 49/165 (29%), Gaps = 49/165 (29%)
Query: 62 CLNGRCDNTLGSYRCACQPGYS---------PSPD---GGFCVDRDECRTPGDH--DECS 107
+G + G C Y P D C EC+
Sbjct: 8 HHHGSIE---GRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECN 64
Query: 108 QKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYE 167
+ C Q +G C C+C+ G+ G C D+C
Sbjct: 65 R-------------AICRQGCSPKHGSCKL---PGDCRCQYGW----QGLYC---DKCIP 101
Query: 168 NPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFC-VDRDECRTPG 211
+P C++G C+ ++C C+ + G C D + C T
Sbjct: 102 HP-GCVHGICNE---PWQCLCETNWG----GQLCDKDLNYCGTHQ 138
Score = 36.2 bits (84), Expect = 0.003
Identities = 17/101 (16%), Positives = 25/101 (24%), Gaps = 24/101 (23%)
Query: 124 CSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGS 183
+ +G +G C + G C C + CD +
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCDDYY----YGFGC--NKFCRPRDDFFGHYACD---QN 49
Query: 184 YRCACQPGY------------SPSPDGGFCVDRDECRTPGG 212
C G+ SP G C +CR G
Sbjct: 50 GNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYG 90
Score = 27.7 bits (62), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 49 DLNVDECYENPLICLNGRCDNT-LGSYRCACQPGYS 83
D +++ C + G C NT Y+C+C GYS
Sbjct: 128 DKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYS 163
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 50.5 bits (121), Expect = 9e-08
Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLNGRCDNT 180
C NG C + + C C PG+ G C + +EC+ C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHFCLPG 61
Query: 181 LGSYRCACQPGYSPSPDGGFCVDRDECR 208
SY C+C GY D CV D+C
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCA 89
Score = 44.3 bits (105), Expect = 9e-06
Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 34/116 (29%)
Query: 53 DECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFC-VDRDECRTPGDHDECSQKK 110
C P CL+ G C +++ Y C C PGY +G C + ++EC
Sbjct: 6 SPCISQP--CLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNEC------------- 46
Query: 111 KKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECY 166
+ C+ S+ C C G+ L C+ D+C
Sbjct: 47 -------------HPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89
Score = 28.9 bits (65), Expect = 1.1
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 49 DLNVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECR 98
+L +EC+ C SY C+C GY D CV D+C
Sbjct: 40 ELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 42.4 bits (100), Expect = 3e-06
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 160 IDVDECYENPLICLNG-------RCDNTLGSYRCACQPGYSPSPDGGFC 201
+D+DEC C N +G Y C+C+PGY D C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 39.0 bits (91), Expect = 5e-05
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 19/68 (27%)
Query: 92 VDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFV 151
VD DEC + E + +C C N G + C C+PG+
Sbjct: 2 VDLDECASRSKSGEEDPQP------------QCQHL-------CHNYVGGYFCSCRPGYE 42
Query: 152 LSPTGHAC 159
L H+C
Sbjct: 43 LQEDRHSC 50
Score = 38.6 bits (90), Expect = 6e-05
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 52 VDECYENPLICLNG-------RCDNTLGSYRCACQPGYSPSPDGGFC 91
+DEC C N +G Y C+C+PGY D C
Sbjct: 4 LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 45.2 bits (106), Expect = 5e-06
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+EC++ G C+ C N +G+F+C C+ G+ L P +C +
Sbjct: 2 NECAEEGYCSQ-GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 182 GSYRCACQPGYSPSPDG 198
+
Sbjct: 61 HRSEYTLLLNNLENAIA 77
Score = 39.9 bits (92), Expect = 4e-04
Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 19/125 (15%)
Query: 52 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDE------------CRT 99
V+EC E C + C N+ G+++C C+ GY PD C +
Sbjct: 1 VNECAEEG-YC-SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 100 PGDHDECSQKKKKKKKKKKLYHD-----ECSQNGMCANGMCINMDGSFKCQCKPGFVLSP 154
E + + L + + N++GS + + SP
Sbjct: 59 LPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 118
Query: 155 TGHAC 159
G A
Sbjct: 119 GGLAV 123
Score = 37.5 bits (86), Expect = 0.002
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 162 VDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
V+EC E C + C N+ G+++C C+ GY PD C
Sbjct: 1 VNECAEEG-YC-SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPE 44
Score = 34.1 bits (77), Expect = 0.026
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 27 YTGLSETQTYTGLSDSLSLGVSDLNVDECYENPLICLNGRCD----NTLGSYRCACQPGY 82
+TG ++ L + + +N NG C + +Y CAC G+
Sbjct: 274 FTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGF 333
Query: 83 SPSPDGGFCVD 93
++
Sbjct: 334 RKINSHACALE 344
Score = 29.5 bits (65), Expect = 0.83
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 121 HDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDV 162
+ NG C + +C+ ++ C C GF + ++V
Sbjct: 305 NRCGDNNGGCTH-LCLPSGQNYTCACPTGFRKINSHACALEV 345
Score = 29.5 bits (65), Expect = 0.89
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 165 CYENPLICLNGRCD----NTLGSYRCACQPGYSPSPDGGFCVD 203
+N NG C + +Y CAC G+ ++
Sbjct: 302 AGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACALE 344
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 40.9 bits (96), Expect = 2e-05
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 135 CINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLN-GRCDNTL--GSYRCACQPG 191
+ + C C G + V C E C N G C L + C C G
Sbjct: 25 VLRSNRVEYCWCNSGR----AQCHSVPVKSCSEPR--CFNGGTCQQALYFSDFVCQCPEG 78
Query: 192 YS 193
++
Sbjct: 79 FA 80
Score = 29.0 bits (65), Expect = 0.36
Identities = 18/99 (18%), Positives = 22/99 (22%), Gaps = 34/99 (34%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQ 126
+ C C G + V C C
Sbjct: 25 VLRSNRVEYCWCNSGRA----QCHSVPVKSC----------------------SEPRCFN 58
Query: 127 NGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDE 164
G C + F CQC GF G +C ID
Sbjct: 59 GGTCQQAL---YFSDFVCQCPEGF----AGKSCEIDTRA 90
Score = 28.2 bits (63), Expect = 0.73
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 49 DLNVDECYENPLICLN-GRCDNTL--GSYRCACQPGYS 83
+ V C E C N G C L + C C G++
Sbjct: 45 SVPVKSCSEPR--CFNGGTCQQALYFSDFVCQCPEGFA 80
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 39.4 bits (93), Expect = 2e-05
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 160 IDVDECYENPLICLN-GRCDNTLGSYRCACQPGYS 193
+D D+C NP CLN G C + + SY C C G+
Sbjct: 1 VDGDQCESNP--CLNGGSCKDDINSYECWCPFGFE 33
Score = 37.5 bits (88), Expect = 1e-04
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 50 LNVDECYENPLICLN-GRCDNTLGSYRCACQPGYS 83
++ D+C NP CLN G C + + SY C C G+
Sbjct: 1 VDGDQCESNP--CLNGGSCKDDINSYECWCPFGFE 33
Score = 29.0 bits (66), Expect = 0.13
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 122 DECSQNGMCAN-GMCINMDGSFKCQCKPGFVLSPTGHAC 159
D+C N C N G C + S++C C GF G C
Sbjct: 4 DQCESNP-CLNGGSCKDDINSYECWCPFGF----EGKNC 37
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 42.8 bits (100), Expect = 3e-05
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 27 YTGLSETQTYTGLSDSLSLGVSDLNVDECYENPLICLNGRCDN------TLGSYRCACQP 80
YTG + ++ + + + NP NG C + Y+CAC
Sbjct: 237 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPT 296
Query: 81 GYSPSPDGGFCVDRDECRTP 100
G +G C D +
Sbjct: 297 GVKLLENGKTCKDGNSHHHH 316
Score = 40.1 bits (93), Expect = 3e-04
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 165 CYENPLICLNGRCDN------TLGSYRCACQPGYSPSPDGGFCVDRDECRTP 210
NP NG C + Y+CAC G +G C D +
Sbjct: 265 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHHH 316
Score = 38.5 bits (89), Expect = 8e-04
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 121 HDECSQNGMCANGMCIN--MDGSFKCQCKPGFVLSPTGHACIDVDECY 166
+ NG C++ +C+ + ++C C G L G C D + +
Sbjct: 268 NPCGIDNGGCSH-LCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHH 314
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 38.9 bits (91), Expect = 6e-05
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 122 DECS-QNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDEC 165
CS NG C C S C C G+ L+ G ACI
Sbjct: 2 KLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 36.6 bits (85), Expect = 4e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 97
C S C+C GY+ + +G C+
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 36.6 bits (85), Expect = 4e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 177 CDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
C S C+C GY+ + +G C+
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 41.0 bits (96), Expect = 1e-04
Identities = 37/183 (20%), Positives = 53/183 (28%), Gaps = 50/183 (27%)
Query: 54 ECYENPLICLNGRCDNTLG-SYRCACQPGY-----------SPSPDGGFCVDRDECRTPG 101
+ ++ N+ G + Q +GGFC +R C
Sbjct: 112 KQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICE--- 168
Query: 102 DHDECSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACID 161
C +K L C G+C C C PGF G C
Sbjct: 169 ----CPDGFHGPHCEKALCTPRCMNGGLCVT--------PGFCICPPGF----YGVNC-- 210
Query: 162 VDECYENPLICLN-GRCDNTLGSYRCACQPGYS---------PSP--DGGFCVDRDECRT 209
+ C N G C +C C PG P P +GG C+ + +C+
Sbjct: 211 --DKANCSTTCFNGGTCFYP---GKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKC 265
Query: 210 PGG 212
G
Sbjct: 266 SKG 268
Score = 36.8 bits (85), Expect = 0.004
Identities = 40/179 (22%), Positives = 53/179 (29%), Gaps = 66/179 (36%)
Query: 64 NGRCDNTLGSYRCACQPGY-----------SPSPDGGFCVDRDECR-TPG------DHDE 105
G C+ C C G+ +GG CV C PG D
Sbjct: 158 GGFCNE---RRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKAN 214
Query: 106 CSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDEC 165
CS C G C KC C PG G C ++ +C
Sbjct: 215 CSTT--------------CFNGGTCFY--------PGKCICPPGL----EGEQC-EISKC 247
Query: 166 YENPLICLN-GRCDNTLGSYRCACQPGYS-----------PSPDGGFCVDRDECRTPGG 212
P C N G+C +G +C C GY G C + ++C+ G
Sbjct: 248 ---PQPCRNGGKC---IGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEG 300
Score = 26.4 bits (58), Expect = 7.4
Identities = 22/116 (18%), Positives = 31/116 (26%), Gaps = 45/116 (38%)
Query: 62 CLN-GRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLY 120
C N G+C +G +C C GY G C + C
Sbjct: 251 CRNGGKC---IGKSKCKCSKGYQ----GDLC-SKPVCEPG-------------------- 282
Query: 121 HDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLNG 175
C +G C KCQC+ G+ G C + +
Sbjct: 283 ---CGAHGTCHEP--------NKCQCQEGW----HGRHCNKRYEASLIGTKHHHHH 323
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 39.4 bits (92), Expect = 2e-04
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 147 KPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVD 203
+ + A D++EC + + + C+N +G Y C+C P Y D C
Sbjct: 103 ERFTGFAAYYVAT-DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 37.9 bits (88), Expect = 8e-04
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVD 93
+++EC + + + C+N +G Y C+C P Y D C
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 34.4 bits (79), Expect = 0.011
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 122 DECSQ--NGMCANGMCINMDGSFKCQCKPGFVLSPTGHACID 161
+EC+ + C + C N G + C C P + L C
Sbjct: 118 NECTDFVDVPC-SHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 37.0 bits (86), Expect = 2e-04
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 135 CINMDGSFKCQCKPGFVLSPTGHACIDVDEC 165
C +C C G+VL +C+ +
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 33.9 bits (78), Expect = 0.003
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 67 CDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 97
C RC+C GY D CV +
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 33.9 bits (78), Expect = 0.003
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 177 CDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
C RC+C GY D CV +
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 39.1 bits (91), Expect = 3e-04
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 159 CIDVDECYENP--LICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDR 204
D+DEC P + C N LG + C+C+ GY + C ++
Sbjct: 121 AEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168
Score = 38.0 bits (88), Expect = 7e-04
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 51 NVDECYENP--LICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDR 94
++DEC P + C N LG + C+C+ GY + C ++
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168
Score = 34.9 bits (80), Expect = 0.009
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 122 DECSQNGM---CANGMCINMDGSFKCQCKPGFVLSPTGHACID 161
DEC + C N G F C C+ G+VL C +
Sbjct: 125 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 38.3 bits (88), Expect = 0.001
Identities = 22/158 (13%), Positives = 35/158 (22%), Gaps = 38/158 (24%)
Query: 51 NVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKK 110
++ C C C+ + G C +C
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTT----GPDC---GKC------------- 329
Query: 111 KKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPL 170
KK Y + G + + C P S + C + +N
Sbjct: 330 ------KKNYQGRP-----WSPGSYLPIPKGAANACIPSIS-SIGTNVCDNELLHCQNGG 377
Query: 171 ICLNGRCD----NTLGSY--RCACQPGYSPSPDGGFCV 202
C N G + C+ S D G
Sbjct: 378 TCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGA 415
Score = 32.9 bits (74), Expect = 0.062
Identities = 20/143 (13%), Positives = 26/143 (18%), Gaps = 48/143 (33%)
Query: 49 DLNVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQ 108
P G AC P S T +E
Sbjct: 327 GKCKKNYQGRP--WSPGSYLPIPKGAANACIPSISS------------IGTNVCDNELLH 372
Query: 109 KKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYEN 168
C G C N + C C + TG C ++
Sbjct: 373 ---------------CQNGGTCHNNVR--------CLCPAAY----TGILC---EKLRCE 402
Query: 169 PLICLNGRCDNTLGSYRCACQPG 191
G C + G
Sbjct: 403 E----AGSCGSDSGQGAPPHGTH 421
Score = 27.9 bits (61), Expect = 2.5
Identities = 11/119 (9%), Positives = 25/119 (21%), Gaps = 1/119 (0%)
Query: 75 RCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQNGMCANGM 134
C YS + E + + + +L + ++ +
Sbjct: 203 EIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDL 262
Query: 135 CINMDGSFKCQCKPGFVLSPTGHACI-DVDECYENPLICLNGRCDNTLGSYRCACQPGY 192
I + + + I D+ C C C+
Sbjct: 263 RIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNT 321
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 38.3 bits (88), Expect = 0.001
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 120 YHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACI 160
+ +NG C++ +C+ +C C GF L CI
Sbjct: 578 SNPCAEENGGCSH-LCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 35.2 bits (80), Expect = 0.015
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 13 LHWASAGPAVVHSTYTGLSETQTYTGLSDSLSLGVSDLNVDECYENPLICLNGRCD---- 68
++W + + +E + L + NP NG C
Sbjct: 534 VYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCL 593
Query: 69 NTLGSYRCACQPGYSPSPDGGFCV 92
RCAC G+ D C+
Sbjct: 594 YRPQGLRCACPIGFELISDMKTCI 617
Score = 34.8 bits (79), Expect = 0.018
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 165 CYENPLICLNGRCD----NTLGSYRCACQPGYSPSPDGGFCV 202
NP NG C RCAC G+ D C+
Sbjct: 576 IGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 37.1 bits (85), Expect = 0.003
Identities = 32/157 (20%), Positives = 44/157 (28%), Gaps = 24/157 (15%)
Query: 55 CYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKK 114
C C + C + C P D R GD CS +
Sbjct: 145 CGPASFQCNSSTCIP--QLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH-- 200
Query: 115 KKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLN 174
C +G CI S++C P C V C + C +
Sbjct: 201 ---------------CLSGECI--HSSWRCDGGPDCKDKSDEENC-AVATCRPDEFQCSD 242
Query: 175 GRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPG 211
G C + GS +C + D CV+ C P
Sbjct: 243 GNCIH--GSRQCDREYDCKDMSDEVGCVNVTLCEGPN 277
Score = 35.6 bits (81), Expect = 0.011
Identities = 39/169 (23%), Positives = 60/169 (35%), Gaps = 20/169 (11%)
Query: 54 ECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHD----ECSQK 109
C + C +G C + GS +C + D CV+ C P EC
Sbjct: 232 TCRPDEFQCSDGNCIH--GSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITL 289
Query: 110 KKK-----------KKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHA 158
K + K+ +EC N + +C ++ ++C C GF L
Sbjct: 290 DKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR- 348
Query: 159 CIDVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
C D+DEC + + C N G Y+C C+ G+ P C
Sbjct: 349 CEDIDECQDPD--TCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 395
Score = 27.5 bits (60), Expect = 3.7
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 1/131 (0%)
Query: 54 ECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKK 113
EC +C N D S + G + D ++ +
Sbjct: 285 ECITLDKVC-NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL 343
Query: 114 KKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICL 173
+++ + Q+ + +C+N++G +KCQC+ GF L P AC V
Sbjct: 344 VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 403
Query: 174 NGRCDNTLGSY 184
+ TL
Sbjct: 404 HEVRKMTLDRS 414
Score = 26.7 bits (58), Expect = 8.5
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 61 ICLNG-RCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 97
+CL + + + CAC G + D C+ E
Sbjct: 677 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 714
Score = 26.7 bits (58), Expect = 8.5
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 171 ICLNG-RCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
+CL + + + CAC G + D C+ E
Sbjct: 677 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 714
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 36.7 bits (84), Expect = 0.004
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Query: 116 KKKLYHDECSQNGMCANGMCINMDGSF--KCQCKPGFVLSPTGHACIDVDECYENPLICL 173
+ +Y + S+ + + + +L +EC + C
Sbjct: 217 QDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCS 276
Query: 174 NGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
+ +G + C C YS + D C
Sbjct: 277 HLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF 310
Score = 33.6 bits (76), Expect = 0.044
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
Query: 120 YHDECSQN-GMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCD 178
+EC+ + G C++ G F C C + L+ C R
Sbjct: 264 GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMV 323
Query: 179 NTLGSYRCACQPGYSPSPDGGFCVDRDECR 208
P +S D + +
Sbjct: 324 IDEQQSPDIILPIHSLRNVRAIDYDPLDKQ 353
Score = 32.9 bits (74), Expect = 0.071
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 120 YHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYEN 168
H NG C++ + DG+ +C C VL +C + +
Sbjct: 579 QHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKHHHHH 627
Score = 32.5 bits (73), Expect = 0.12
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 13 LHWASAGPAVVHS--TYTGLSETQTYTGLSDSLSL-GVSDLNVDECYENPLICLNGRCD- 68
L+W ++ T+ ++ + V +LN+ E ++P NG C
Sbjct: 532 LYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSH 591
Query: 69 ----NTLGSYRCACQPGYSPSPDGGFCVD 93
G+ RC+C D C
Sbjct: 592 ICLVKGDGTTRCSCPMHLVLLQDELSCGG 620
Score = 30.2 bits (67), Expect = 0.61
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 182 GSYRCACQPGYSPSPDGGFCVD 203
G+ RC+C D C
Sbjct: 599 GTTRCSCPMHLVLLQDELSCGG 620
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 35.8 bits (83), Expect = 0.007
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 122 DECS--QNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCD 178
+EC + C + C+ S+ C C G+ L C+ D+C L D
Sbjct: 3 NECHPERTDGCQH-FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 60
Score = 30.8 bits (70), Expect = 0.28
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 64 NGRCDN----TLGSYRCACQPGYSPSPDGGFCVDRDECRTP 100
C + SY C+C GY D CV D+C
Sbjct: 10 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 50
Score = 30.8 bits (70), Expect = 0.28
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 174 NGRCDN----TLGSYRCACQPGYSPSPDGGFCVDRDECRTP 210
C + SY C+C GY D CV D+C
Sbjct: 10 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 50
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 35.5 bits (81), Expect = 0.009
Identities = 16/145 (11%), Positives = 33/145 (22%), Gaps = 27/145 (18%)
Query: 51 NVDECYENPLIC-LNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQK 109
C N C ++ C + + C C Y + +G CV + +
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVAEGSPQRVNGKVKGR-- 59
Query: 110 KKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENP 169
+ F+ +V+ G + + E
Sbjct: 60 ---------------------IFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETV 98
Query: 170 LICLN-GRCDNTLGSYRCACQPGYS 193
L + + A +
Sbjct: 99 GYSLLPLAPIGGIIGWMFAVEQDGF 123
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 35.2 bits (80), Expect = 0.014
Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 3/87 (3%)
Query: 132 NGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLN-GRCDNTLGSYRCACQP 190
S + + S G C +E CLN G C C C
Sbjct: 160 QSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGV--CLNGGVCSVVDDQAVCDCSR 217
Query: 191 GYSPSPDGGFCVDRDECRTPGGKYTAW 217
D + G +Y +
Sbjct: 218 TGFRGKDCSQGKEEYIATFKGSEYFCY 244
Score = 34.0 bits (77), Expect = 0.036
Identities = 13/77 (16%), Positives = 19/77 (24%), Gaps = 6/77 (7%)
Query: 132 NGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLN-GRCDNTLGSYRCACQP 190
+G ++ + Q G + C NP C N G C + Y C C
Sbjct: 592 DGQSKDIRQMAEVQSTAGVKP---SCSRETAKPCLSNP--CKNNGMCRDGWNRYVCDCSG 646
Query: 191 GYSPSPDGGFCVDRDEC 207
Sbjct: 647 TGYLGRSCEREATVLSY 663
Score = 29.0 bits (64), Expect = 1.6
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 4/35 (11%)
Query: 51 NVDECYENPLICLN-GRCDNTLGSYRCACQ-PGYS 83
+E CLN G C C C G+
Sbjct: 189 AGEEGEGGV--CLNGGVCSVVDDQAVCDCSRTGFR 221
Score = 28.7 bits (63), Expect = 1.6
Identities = 12/63 (19%), Positives = 15/63 (23%), Gaps = 6/63 (9%)
Query: 159 CIDVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGGKYTAW 217
C E+ C N G C + C C S G C D
Sbjct: 1014 EGPSTTCQEDS--CSNQGVCLQQWDGFSCDCSM---TSFSGPLCNDPGTTYIFSKGGGQI 1068
Query: 218 LFP 220
+
Sbjct: 1069 TYK 1071
Score = 28.7 bits (63), Expect = 1.8
Identities = 11/59 (18%), Positives = 14/59 (23%), Gaps = 3/59 (5%)
Query: 40 SDSLSLGVSDLNVDECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 97
+ + S C NP C N G C + Y C C
Sbjct: 607 TAGVKPSCSRETAKPCLSNP--CKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSY 663
Score = 27.9 bits (61), Expect = 3.3
Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 6/51 (11%)
Query: 53 DECYENPLICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGD 102
C E+ C N G C + C C S G C D
Sbjct: 1018 TTCQEDS--CSNQGVCLQQWDGFSCDCSM---TSFSGPLCNDPGTTYIFSK 1063
Score = 27.9 bits (61), Expect = 3.7
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 121 HDECSQNGMCANGMCINMDGSFKCQC 146
+E G+C +D C C
Sbjct: 190 GEEGEGGVCLNGGVCSVVDDQAVCDC 215
Score = 27.1 bits (59), Expect = 5.2
Identities = 10/44 (22%), Positives = 13/44 (29%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDEC 165
C N NGMC + + C C L + V
Sbjct: 620 KPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSY 663
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 35.2 bits (80), Expect = 0.015
Identities = 32/158 (20%), Positives = 44/158 (27%), Gaps = 24/158 (15%)
Query: 54 ECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKK 113
C C + C + C P D R GD CS +
Sbjct: 126 TCGPASFQCNSSTCIP--QLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFE--- 180
Query: 114 KKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICL 173
C +G CI S++C P C V C + C
Sbjct: 181 --------------FHCLSGECI--HSSWRCDGGPDCKDKSDEENC-AVATCRPDEFQCS 223
Query: 174 NGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPG 211
+G C + GS +C + D CV+ C P
Sbjct: 224 DGNCIH--GSRQCDREYDCKDMSDEVGCVNVTLCEGPN 259
Score = 30.5 bits (68), Expect = 0.49
Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 8/157 (5%)
Query: 54 ECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPG---DHDECSQKK 110
C C + D S C F EC T + +
Sbjct: 226 NCIHGSRQC-DREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDW 284
Query: 111 KKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPL 170
+ K+ ++ NG C + +C ++ ++C C GF L C D+DEC +
Sbjct: 285 SDEPIKECGTNECLDNNGGC-SHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPD- 341
Query: 171 ICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
+ C N G Y+C C+ G+ P C
Sbjct: 342 -TCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 377
Score = 28.6 bits (63), Expect = 1.8
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 6/129 (4%)
Query: 48 SDLNVDECYENPLICLNGR----CDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDH 103
SD + EC N + NG C++ Y C C G+ C D DEC+ P
Sbjct: 285 SDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTC 343
Query: 104 DECSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVD 163
+ + K + + + + F ++ +
Sbjct: 344 SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF-TNRHEVRKMTLDRSEYTSLI 402
Query: 164 ECYENPLIC 172
N +
Sbjct: 403 PNLRNVVAL 411
Score = 27.5 bits (60), Expect = 4.6
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 61 ICLNG-RCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 97
+CL + + + CAC G + D C+ E
Sbjct: 659 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 696
Score = 27.5 bits (60), Expect = 4.6
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 171 ICLNG-RCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
+CL + + + CAC G + D C+ E
Sbjct: 659 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 696
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 33.9 bits (77), Expect = 0.028
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 120 YHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECYENPLICLNGRCD 178
Y +C C NG + C C PG+ G C + ++ L +
Sbjct: 285 YGPDCKLRCSCNNGEMCDRFQ--GCLCSPGW----QGLQCEREGIPRMTPKIVDLPDHIE 338
Query: 179 NTLGSYRCACQPGYSPSPD 197
G + C+ P P
Sbjct: 339 VNSGKFNPICKASGWPLPT 357
Score = 30.8 bits (69), Expect = 0.31
Identities = 8/75 (10%), Positives = 17/75 (22%), Gaps = 4/75 (5%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
+ + G F CK ++ + L+ + N
Sbjct: 324 PRMTPKIVDLPDHIEVNSGKFNPICKASGW---PLPTNEEMTLVKPDG-TVLHPKDFNHT 379
Query: 182 GSYRCACQPGYSPSP 196
+ A + P
Sbjct: 380 DHFSVAIFTIHRILP 394
Score = 28.5 bits (63), Expect = 2.0
Identities = 23/155 (14%), Positives = 36/155 (23%), Gaps = 20/155 (12%)
Query: 48 SDLNVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECS 107
D + + + L + QP D G R
Sbjct: 129 EDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQP-----QDAGVYSARYIGGNLFTSAFTR 183
Query: 108 QKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC-IDVDECY 166
++ + +K NG+C G +C C PGF G C +
Sbjct: 184 LIVRRCEAQKWGPECNHLCTACMNNGVCHEDTG--ECICPPGF----MGRTCEKACELHT 237
Query: 167 ENPLICLNGRCDNT--------LGSYRCACQPGYS 193
Y C+C G+
Sbjct: 238 FGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWK 272
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 32.0 bits (72), Expect = 0.037
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 124 CSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVD-ECYENPLIC-LNGRCDNT- 180
+N C +DG+ + +C GF G C+ C EN C C
Sbjct: 18 VPENAACYR----YLDGTEEWRCLLGF--KEVGGKCVPASITCEENNGGCAPEAECTMDD 71
Query: 181 LGSYRCAC-QPGYSPSPDGGFCVDRDECR 208
C C + G P +G FC
Sbjct: 72 KKEVECKCTKEGSEPLFEGVFCSSSSGPH 100
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 33.5 bits (76), Expect = 0.044
Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 35/161 (21%)
Query: 54 ECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKK 113
Y+ + +G+C C C ++ G +C C T D S
Sbjct: 529 VRYKGEMCSGHGQCSC----GDCLCDSDWT----GYYC----NCTTRTDTCMSSNGLL-- 574
Query: 114 KKKKKLYHDECSQNGMCANGMCINMD----GSFKCQCKPGFVLSPTGHACIDVDECYENP 169
CS G C G C+ + G +C C++ +
Sbjct: 575 ----------CSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGA 624
Query: 170 L---ICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
L N C + + S + G D C ++E
Sbjct: 625 LHDENTCNRYCRDEIESVKELKDTGK----DAVNCTYKNED 661
Score = 32.0 bits (72), Expect = 0.14
Identities = 34/168 (20%), Positives = 48/168 (28%), Gaps = 42/168 (25%)
Query: 46 GVSDLNVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTPGDHDE 105
S + E +C + R + G +C C G +C EC
Sbjct: 479 RPSQQDECSPREGQPVC-SQRGECLCG--QCVCHSSDFGKITGKYC----ECDDFSCVRY 531
Query: 106 CSQKKKKKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHAC---IDV 162
+ CS +G C+ G C C + TG+ C
Sbjct: 532 KGE--------------MCSGHGQCSCG---------DCLCDSDW----TGYYCNCTTRT 564
Query: 163 DECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDGGFCVDRDECRTP 210
D C + + +GR GS C QPG G C C
Sbjct: 565 DTCMSSNGLLCSGRGKCECGSCVC-IQPGSY----GDTCEKCPTCPDA 607
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 33.1 bits (75), Expect = 0.049
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 61 ICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCV 92
+CL + + + CAC G + D C+
Sbjct: 283 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
Score = 33.1 bits (75), Expect = 0.049
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 171 ICLN-GRCDNTLGSYRCACQPGYSPSPDGGFCV 202
+CL + + + CAC G + D C+
Sbjct: 283 LCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
Score = 30.8 bits (69), Expect = 0.32
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 124 CSQNGMCANGMCINM-DGSFKCQCKPGFVLSPTGHACI 160
C +C IN F C C G +L+ +C+
Sbjct: 280 CQY--LCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.084
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 26/93 (27%)
Query: 3 AVAPTEAAMALHWASAGPAVVHSTYTGLS--ETQTYTGL---SDSLSLGVSDLNVDECYE 57
A+ E A S G +T+ G S E Y L +D +S+ L V+
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGE---YAALASLADVMSI--ESL-VE---- 1784
Query: 58 NPLICLNGRCDNTL--------GSYR-CACQPG 81
++ G +Y A PG
Sbjct: 1785 --VVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 29.0 bits (65), Expect = 0.28
Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 159 CIDVDECYENPLICLNGRC-----DNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
D C NG C D+T C C GYS DG C E
Sbjct: 2 KDDQLICVNE-----NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
Score = 28.6 bits (64), Expect = 0.33
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 122 DECS-QNGMCANGMCIN-MDGSFKCQCKPGFVLSPTGHACIDVDEC 165
C +NG C C + C+C G+ L G +C E
Sbjct: 6 LICVNENGGCEQ-YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
Score = 27.1 bits (60), Expect = 1.3
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 64 NGRC-----DNTLGSYRCACQPGYSPSPDGGFCVDRDEC 97
NG C D+T C C GYS DG C E
Sbjct: 12 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 30.8 bits (69), Expect = 0.32
Identities = 27/138 (19%), Positives = 36/138 (26%), Gaps = 34/138 (24%)
Query: 75 RCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQNGMCANGM 134
+C C G + C + E + G+C G
Sbjct: 494 QCLCHTSDV----PGKLIYGQYCECDTINCERYNGQ----------VCGGPGRGLCFCG- 538
Query: 135 CINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDN--TLGSYRCACQPGY 192
KC+C PGF G AC + E L C C C GY
Sbjct: 539 --------KCRCHPGF----EGSAC-QCERTTEGCLNPRRVECSGRGRCRCNVCECHSGY 585
Query: 193 SPSPDGGFCVDRDECRTP 210
C + C +P
Sbjct: 586 Q----LPLCQECPGCPSP 599
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.37
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 108 QKK--KKKKKKKKLYHDECSQNGMCANGMCIN 137
+K+ KK + KLY D+ S A + I
Sbjct: 18 EKQALKKLQASLKLYADD-S-----APALAIK 43
Score = 27.2 bits (59), Expect = 3.1
Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 3 AVAPTEAAMALHWASAGPAV-VHST 26
A+ +A++ L+ + PA+ + +T
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKAT 45
Score = 26.1 bits (56), Expect = 8.1
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 7/34 (20%)
Query: 32 ETQTYTGLSDSLSLGVSDLNVDECYENPLICLNG 65
E Q L SL L D P + +
Sbjct: 18 EKQALKKLQASLKLYADD-------SAPALAIKA 44
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 28.9 bits (64), Expect = 0.41
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 11/87 (12%)
Query: 123 ECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDE--CYENPLIC-LNGRCDN 179
+N C +DG+ + +C F C+ C + C C
Sbjct: 11 NVPENAACYR----YLDGTEEWRCLLYF--KEDAGKCVPAPNMTCKDKNGGCAPEAECKM 64
Query: 180 TL-GSYRCACQPGYS-PSPDGGFCVDR 204
C C S P +G FC
Sbjct: 65 NDKNEIVCKCTKEGSEPLFEGVFCSHH 91
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.4 bits (68), Expect = 0.43
Identities = 12/57 (21%), Positives = 15/57 (26%), Gaps = 8/57 (14%)
Query: 53 DECYENPLICLN-GRCDNTLGSYRCAC-QPGYSPSPDGGFCVDRDECRTPGDHDECS 107
C E+ C N G C + C C +S G C D
Sbjct: 186 TTCQEDS--CSNQGVCLQQWDGFSCDCSMTSFS----GPLCNDPGTTYIFSKGGGQI 236
Score = 30.4 bits (68), Expect = 0.46
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 8/59 (13%)
Query: 163 DECYENPLICLN-GRCDNTLGSYRCAC-QPGYSPSPDGGFCVDRDECRTPGGKYTAWLF 219
C E+ C N G C + C C +S G C D +
Sbjct: 186 TTCQEDS--CSNQGVCLQQWDGFSCDCSMTSFS----GPLCNDPGTTYIFSKGGGQITY 238
Score = 29.2 bits (65), Expect = 1.2
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECY 166
C ++ G+C+ F C C +G C D Y
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSF---SGPLCNDPGTTY 227
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.49
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 29 GLSETQTYTGLSDSLSLGVSDLNVDECYENPLIC 62
L+ + + L L DL + NP
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 27.0 bits (60), Expect = 0.85
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 126 QNGMCANGMCIN-MDGSFKCQCKPGFVLSPTGHACIDVDEC 165
+NG C C N D C C G+ L+ +C
Sbjct: 5 KNGRCEQ-FCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
Score = 27.0 bits (60), Expect = 0.87
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 64 NGRC-----DNTLGSYRCACQPGYSPSPDGGFCVDRDEC 97
NGRC ++ C+C GY + + C
Sbjct: 6 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
Score = 27.0 bits (60), Expect = 0.87
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 174 NGRC-----DNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
NGRC ++ C+C GY + + C
Sbjct: 6 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 27.8 bits (61), Expect = 1.1
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 124 CSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDE--CYENPLIC-LNGRCDNT 180
C QN C ++D +C+C + G C++ C EN C + +C
Sbjct: 12 CPQNSGCF----RHLDEREECKCLLNY--KQEGDKCVENPNPTCNENNGGCDADAKCTEE 65
Query: 181 LGS-----YRCACQPGYS-PSPDGGFCVDR 204
C C S P DG FC
Sbjct: 66 DSGSNGKKITCECTKPDSYPLFDGIFCSHH 95
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 26.2 bits (58), Expect = 1.8
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 64 NGRC-----DNTLGSYRCACQPGYSPSPDGGFCVDRDEC 97
NG C D+T C C GYS DG C E
Sbjct: 6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
Score = 26.2 bits (58), Expect = 1.8
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 174 NGRC-----DNTLGSYRCACQPGYSPSPDGGFCVDRDEC 207
NG C D+T C C GYS DG C E
Sbjct: 6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
Score = 25.8 bits (57), Expect = 2.6
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 126 QNGMCANGMCINMDGS-FKCQCKPGFVLSPTGHACIDVDEC 165
+NG C C + G+ C+C G+ L G +C E
Sbjct: 5 ENGGCEQ-YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 28.0 bits (62), Expect = 1.8
Identities = 28/119 (23%), Positives = 37/119 (31%), Gaps = 18/119 (15%)
Query: 75 RCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDECSQNGMCANGM 134
C C GY G C EC+T G + + +K CS G C G
Sbjct: 108 ICRCDTGYI----GKNC----ECQTQGRSSQELEGSCRKDNN----SIICSGLGDCVCGQ 155
Query: 135 CINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGSYRCACQPGYS 193
C+ + G C E Y + GR G +C C PG+
Sbjct: 156 CLCHTSDVPGKLIYGQYCECDTINC----ERYNGQVCGGPGRGLCFCG--KCRCHPGFE 208
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 28.4 bits (63), Expect = 2.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 159 CIDVDECYENPLICLNG--RCDNTLGSYRCACQPGYSPSPDGGFC 201
+DVDEC E L+ C N +G Y C+C+ GY D C
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
Score = 26.9 bits (59), Expect = 5.5
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 7/57 (12%)
Query: 120 YHDECSQNGMCANGMCI------NMDGSFKCQCKPGFVLSPTGHACIDVD-ECYENP 169
+EC + +G C G+ + EC ++
Sbjct: 278 AGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDG 334
Score = 26.5 bits (58), Expect = 8.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 51 NVDECYENPLICLNG--RCDNTLGSYRCACQPGYSPSPDGGFC 91
+VDEC E L+ C N +G Y C+C+ GY D C
Sbjct: 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 27.9 bits (61), Expect = 2.7
Identities = 22/157 (14%), Positives = 31/157 (19%), Gaps = 25/157 (15%)
Query: 55 CYENPLICLNGRCDNTLGSY---RCACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKK 111
+ C + CQ C C CSQ
Sbjct: 162 TAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQ--- 218
Query: 112 KKKKKKKLYHDECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLI 171
C +DG C P + C++ C +
Sbjct: 219 ------------PDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWR-CVNFSFCQDLHHK 265
Query: 172 CLNGRCDN------TLGSYRCACQPGYSPSPDGGFCV 202
C N R C GY+ + C
Sbjct: 266 CKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT 302
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 27.0 bits (60), Expect = 3.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 64 NGRCDNTLGSYRCACQPGYS 83
+G C T+ +Y C C PG+S
Sbjct: 130 HGECVETINNYTCKCDPGFS 149
Score = 27.0 bits (60), Expect = 3.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 174 NGRCDNTLGSYRCACQPGYS 193
+G C T+ +Y C C PG+S
Sbjct: 130 HGECVETINNYTCKCDPGFS 149
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 27.5 bits (60), Expect = 3.5
Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 12/133 (9%)
Query: 67 CDNTLGSYRC--ACQPGYSPSPDGGFCVDRDECRTPGDHDECSQKKKKKKKKKKLYHDEC 124
C + + C AC P +G CVDRD C + + ++ EC
Sbjct: 221 CRHYYYAGVCVPACPPNTYRF-EGWRCVDRDFCAN------ILSAESSDSEGFVIHDGEC 273
Query: 125 SQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGSY 184
Q C +G N S C + C G+
Sbjct: 274 MQE--CPSGFIRNGSQSMYCI-PCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNL 330
Query: 185 RCACQPGYSPSPD 197
+ G + + +
Sbjct: 331 LINIRRGNNIASE 343
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 27.3 bits (59), Expect = 4.1
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 15/99 (15%)
Query: 122 DECSQNGMCANGMCINMDGSFKCQCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTL 181
CS +G C +G C C G+ + G + + R + L
Sbjct: 196 SYCSGHGDCISG---------VCFCDLGYT-AAQGTCVSNTPNHS-----EMFDRFEGKL 240
Query: 182 GSYRCACQPGYSPSPDGGFCVDRDECRTPGGKYTAWLFP 220
G + G R GK A P
Sbjct: 241 SPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVP 279
>1ccv_A AMCI, chymotrypsin inhibitor; protein inhibitor, hemolymph,
canonical inhibitor, hydrolase inhibitor; NMR {Apis
mellifera} SCOP: g.22.1.1
Length = 56
Score = 25.1 bits (55), Expect = 4.8
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 144 CQCKPGFVLSPTGHACIDVDEC 165
CQC+ GF+ + G C+ + C
Sbjct: 36 CQCQEGFLRNGEGA-CVLPENC 56
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation,
viral protein; HET: NAG; 2.85A {Simian virus 5}
Length = 497
Score = 27.0 bits (59), Expect = 5.5
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 22/93 (23%)
Query: 135 CINMDGSFKCQCKPGFVLSPTGHACI--DVDEC--------YENPLICLNG----RCDNT 180
C + C+ VLS AC+ ++ C + + +G C +
Sbjct: 303 CTITPNTVYCRYNDAQVLSDDTMACLQGNLTRCTFSPVVGSFLTRFVLFDGIVYANCRSM 362
Query: 181 LGSYRCAC-QPGYSPSPDGGFCV---DRDECRT 209
L C C QP V D +C +
Sbjct: 363 L----CKCMQPAAVILQPSSSPVTVIDMYKCVS 391
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 27.2 bits (60), Expect = 5.5
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 93 DRDECRTPGDHDECSQKKKKKKKKKK 118
+RDE GD D KKKKKKKK
Sbjct: 80 ERDEDDEDGDGDGDGATGKKKKKKKK 105
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle
disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Length = 481
Score = 26.6 bits (58), Expect = 7.1
Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 22/93 (23%)
Query: 135 CINMDGSFKCQCKPGFVLSPTGHACI--DVDEC--------YENPLICLNG----RCDNT 180
CI D C F +SP ++C+ + C P + L G C T
Sbjct: 307 CIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMT 366
Query: 181 LGSYRCAC-QPGYSPSPDGGFCV---DRDECRT 209
C C P S + G V DR C
Sbjct: 367 T----CRCADPPGIISQNYGEAVSLIDRQSCNI 395
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 26.5 bits (58), Expect = 7.5
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 20/84 (23%)
Query: 145 QCKPGFVLSPTGHACIDVDECYENPLICLNGRCDNTLGSYRCACQPGYSPSPDG------ 198
QC+ F P C + C C L + CQ +SP DG
Sbjct: 236 QCQLTFG--PDSRHCPQLPPP------CAALWCSGHLNGH-AMCQTKHSPWADGTPCGPA 286
Query: 199 -----GFCVDRDECRTPGGKYTAW 217
G C+ D+ + +
Sbjct: 287 QACMGGRCLHMDQLQDFNIPQADY 310
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 26.3 bits (57), Expect = 8.5
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 144 CQCKPGFVLSPTGHACIDVDECY 166
C + G LS C D+ C
Sbjct: 6 CDGRGGLKLSQDMDTCEDILPCV 28
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral PR; HET: NAG; 3.05A {Human
parainfluenza virus 3}
Length = 490
Score = 26.2 bits (57), Expect = 9.7
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 22/93 (23%)
Query: 135 CINMDGSFKCQCKPGFVLSPTGHACI--DVDEC--------YENPLICLNG----RCDNT 180
CI S+ C PGFVL+ +C+ ++ +C +NG C T
Sbjct: 313 CIEAFSSYICPSDPGFVLNHEMESCLSGNISQCPRTVVKSDIVPRYAFVNGGVVANCITT 372
Query: 181 LGSYRCAC-QPGY--SPSPDGGF-CVDRDECRT 209
C C G + PD G + EC T
Sbjct: 373 T----CTCNGIGNRINQPPDQGVKIITHKECNT 401
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.461
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,478,788
Number of extensions: 207521
Number of successful extensions: 1586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 421
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)