BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11801
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 8 GSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
G C +C C G++GD C A+C+ C +GG C+ P+KC C GY G +CE
Sbjct: 423 GYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 475
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRC 59
NGG+C +C+C G +G+ C ++C +PC NGG+CIG KC C GY G C
Sbjct: 221 NGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLC 274
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEADYR 64
RNGG C+G ++C C GY+GD C + C+ C G C P+KC C G+ GR C Y
Sbjct: 252 RNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYE 311
Query: 65 TGPCYTK 71
TK
Sbjct: 312 ASLIGTK 318
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 32/63 (50%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEADYRT 65
NGG C+ C+C G+ G NC +A C C NGG C P KC C G G +CE
Sbjct: 189 NGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCP 248
Query: 66 GPC 68
PC
Sbjct: 249 QPC 251
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
RNGG C C C G+ G +C +A C C+NGG C+ P C C G+ G C+
Sbjct: 156 RNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCD 211
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 26 NCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
C +AEC C NGG C C C G+ G CE
Sbjct: 145 TCQQAECPGGCRNGGFCNERRICECPDGFHGPHCE 179
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 8 GSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEA 61
G C +C C G++GD C A+C+ C +GG C+ P+KC C GY G +CE
Sbjct: 402 GYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAE 31
R+GG C+ +C+C+ GY G C + +
Sbjct: 431 RHGGVCVRPNKCLCKKGYLGPQCEQVD 457
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 8 GSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEA 61
G C +C C G++GD C A+C+ C +GG C+ P+KC C GY G +CE
Sbjct: 402 GYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAE 31
R+GG C+ +C+C+ GY G C + +
Sbjct: 431 RHGGVCVRPNKCLCKKGYLGPQCEQVD 457
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 8 GSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEA 61
G C +C C G++GD C A+C+ C +GG C+ P+KC C GY G +CE
Sbjct: 402 GYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAE 31
R+GG C+ +C+C+ GY G C + +
Sbjct: 431 RHGGVCVRPNKCLCKKGYLGPQCEQVD 457
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 8 GSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
G C +C C G++GD C A+C+ C +GG C+ P+KC C GY G +CE
Sbjct: 423 GYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 475
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 5 RNGGSCL---GGTRCVCRAGYKGDNC--GEAEC-KEPCLNGGRC---IGPDKCACLYGYA 55
+N +CL G +C+C GY+G +C EC PCL+ GRC I +C C G+
Sbjct: 54 QNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 113
Query: 56 GRRCEADYRTGPCYTKMA 73
G C+ D KM
Sbjct: 114 GHLCQVDLHHILDAQKMV 131
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 11 LGGTRCVCRAGYKGDNCGEAECKE----PCLNGGRC---IGPDKCACLYGYAGRRCEAD 62
LG C C GY G C E + E PC N C IG +C C+ GY G CE +
Sbjct: 25 LGSFECQCLQGYTGPRC-EIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 82
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCEADYR---TGPC 68
PC + G+CI G +C CL GY G RCE D + PC
Sbjct: 14 PCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPC 53
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 5 RNGGSCL---GGTRCVCRAGYKGDNC--GEAEC-KEPCLNGGRC---IGPDKCACLYGYA 55
+N +CL G +C+C GY+G +C EC PCL+ GRC I +C C G+
Sbjct: 52 QNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 111
Query: 56 GRRCE 60
G C+
Sbjct: 112 GHLCQ 116
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 11 LGGTRCVCRAGYKGDNCGEAECKE----PCLNGGRC---IGPDKCACLYGYAGRRCEAD 62
LG C C GY G C E + E PC N C IG +C C+ GY G CE +
Sbjct: 23 LGSFECQCLQGYTGPRC-EIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 80
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCEADYR---TGPC 68
PC + G+CI G +C CL GY G RCE D + PC
Sbjct: 12 PCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPC 51
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 8 GSCLGGTRCVCRAGYKGDNC 27
GSC+ GT+C+C GY G C
Sbjct: 196 GSCINGTKCICDPGYSGPTC 215
Score = 32.7 bits (73), Expect = 0.048, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 31 ECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
+C+E C G CI KC C GY+G C+
Sbjct: 187 QCEEMCYGHGSCINGTKCICDPGYSGPTCK 216
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 8 GSCLGGTRCVCRAGYKGDNC 27
GSC+ GT+C+C GY G C
Sbjct: 196 GSCINGTKCICDPGYSGPTC 215
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 31 ECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
+C+E C G CI KC C GY+G C+
Sbjct: 187 QCEEMCYGHGSCINGTKCICDPGYSGPTCK 216
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 8 GSCLGGTRCVCRAGYKGDNCGEAE----CKEPCLNGGRC--IGPDK--CACLYGYAGRRC 59
G C +C+C + G C + +PCLNGG C GPDK C+C GY+G C
Sbjct: 108 GICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNC 167
Query: 60 EA 61
E
Sbjct: 168 EI 169
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 17 VCRAGYKGDNCGEAECKEPCL-NGGRCIGPDKCACLYGYAGRRCE 60
C G+ G C A C++ C G C P C C YG+ G C+
Sbjct: 53 TCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD 97
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKE 34
+NGG+C RC+C A Y G C + C+E
Sbjct: 374 QNGGTCHNNVRCLCPAAYTGILCEKLRCEE 403
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 35 PCLNGGRC---IGPDKCACLYGYAGRRCEAD 62
PCLNGG C I +C C G+ G+ CE D
Sbjct: 55 PCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 34 EPCLNGGRC---IGPDKCACLYGYAGRRCEAD 62
PCLNGG C I +C C G+ G+ CE D
Sbjct: 54 NPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 35 PCLNGGRC---IGPDKCACLYGYAGRRCE 60
PCLNGG C I +C C +G+ G+ CE
Sbjct: 10 PCLNGGSCKDDINSYECWCPFGFEGKNCE 38
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 34 EPCLNGGRC---IGPDKCACLYGYAGRRCEADYR 64
PCLN G C IG C C G+ G+ CE R
Sbjct: 53 HPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 86
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCEAD 62
PCL+GGRC+ G C C GY G C+ D
Sbjct: 52 PCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 34 EPCLNGGRC---IGPDKCACLYGYAGRRCEADYR 64
PCLN G C IG C C G+ G+ CE R
Sbjct: 9 HPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 42
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 34 EPCLNGGRC---IGPDKCACLYGYAGRRCE 60
PCLN G C IG C C G+ G+ CE
Sbjct: 9 HPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 32 CKEP-CLNGGRC-----IGPDKCACLYGYAGRRCEADYR 64
C EP C NGG C C C G+AG+ CE D R
Sbjct: 51 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 36 CLNGGRCIGPDK-----CACLYGYAGRRCE 60
CLNGG C+ + C C+ GY+G RCE
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCE 43
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
Length = 604
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 22 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
Length = 552
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 11 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 28 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 10 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 10 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 9 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 9 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
Length = 587
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 32 CKEPCLNGGRCI--GPD--KCACL-YGYAGRRC 59
C PC N G C+ G D KC C G+ G C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 36 CLNGGRCIGPDK-----CACLYGYAGRRCEA 61
CLNGG C+ + C C+ GY+G RC+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 24 GDNCGEAECKEPCLNGGRC---IGPDKCACLYGYAGRRCEA 61
GD C + PC NGG C + C CL + GR CE
Sbjct: 47 GDQCASS----PCQNGGSCKDQLQSYICFCLPAFEGRNCET 83
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE
TISSUE Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia ,
Souluble Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 24 GDNCGEAECKEPCLNGGRC---IGPDKCACLYGYAGRRCEA 61
GD C + PC NGG C + C CL + GR CE
Sbjct: 47 GDQCASS----PCQNGGSCKDQLQSYICFCLPAFEGRNCET 83
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 24 GDNCGEAECKEPCLNGGRC---IGPDKCACLYGYAGRRCEADYRTG 66
GD C + PC NGG C + C CL + GR CE G
Sbjct: 3 GDQCASS----PCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDG 44
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization,
Preclinical Pharmacokinetics, Pharmacodynamics, And
Efficacy In A Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue
Factor
Length = 152
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 24 GDNCGEAECKEPCLNGGRC---IGPDKCACLYGYAGRRCEA 61
GD C + PC NGG C + C CL + GR CE
Sbjct: 47 GDQCASS----PCQNGGSCKDQLQSYICFCLPAFEGRNCET 83
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue
Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor
Viia Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation
Factor Viia With Human Soluble Tissue Factor In The
Presence Of Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 24 GDNCGEAECKEPCLNGGRC---IGPDKCACLYGYAGRRCEA 61
GD C + PC NGG C + C CL + GR CE
Sbjct: 47 GDQCASS----PCQNGGSCKDQLQSYICFCLPAFEGRNCET 83
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr,
23 Structures
Length = 41
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 24 GDNCGEAECKEPCLNGGRC---IGPDKCACLYGYAGRRCEA 61
GD C + PC NGG C + C CL + GR CE
Sbjct: 3 GDQCASS----PCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 8 GSCLGGTRCVCRAGYKGDNCGEA--ECK-EPCLNGGRC---IGPDKCACLYGYAGRRCE 60
G G C C G+ G +C EC+ EPC NGG C + C C + GR C+
Sbjct: 74 GDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.144 0.517
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,748,913
Number of Sequences: 62578
Number of extensions: 103636
Number of successful extensions: 393
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 141
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)