RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11801
         (73 letters)



>gnl|CDD|214514 smart00094, TR_FER, Transferrin. 
          Length = 332

 Score = 27.3 bits (61), Expect = 0.52
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 6/27 (22%)

Query: 42  CIGPDKCAC-----LYGYAGR-RCEAD 62
           C G +KCAC      YGY+G  RC A+
Sbjct: 169 CAGDNKCACSSHEPYYGYSGAFRCLAE 195


>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
          large number of membrane-bound and extracellular
          (mostly animal) proteins. Many of these proteins
          require calcium for their biological function and
          calcium-binding sites have been found to be located at
          the N-terminus of particular EGF-like domains;
          calcium-binding may be crucial for numerous
          protein-protein interactions. Six conserved core
          cysteines form three disulfide bridges as in non
          calcium-binding EGF domains, whose structures are very
          similar. EGF_CA can be found in tandem repeat
          arrangements.
          Length = 38

 Score = 24.1 bits (53), Expect = 2.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 5  RNGGSCL---GGTRCVCRAGYKGDNC 27
          +NGG+C+   G  RC C  GY G NC
Sbjct: 12 QNGGTCVNTVGSYRCSCPPGYTGRNC 37



 Score = 22.6 bits (49), Expect = 9.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 35 PCLNGGRCI-GPD--KCACLYGYAGRRCE 60
          PC NGG C+      +C+C  GY GR CE
Sbjct: 10 PCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.144    0.517 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,352,107
Number of extensions: 221288
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 41
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)