RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11801
(73 letters)
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 58.4 bits (141), Expect = 4e-12
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 8 GSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
G C +C C G++GD C A+C+ C +GG C+ P+KC C GY G +CE
Sbjct: 402 GYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 454
Score = 30.7 bits (69), Expect = 0.020
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAE 31
R+GG C+ +C+C+ GY G C + +
Sbjct: 431 RHGGVCVRPNKCLCKKGYLGPQCEQVD 457
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 57.9 bits (140), Expect = 6e-12
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEADYRT 65
NGG+C +C+C G +G+ C ++C +PC NGG+CIG KC C GY G C
Sbjct: 221 NGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCE 280
Query: 66 GPC 68
C
Sbjct: 281 PGC 283
Score = 57.6 bits (139), Expect = 7e-12
Identities = 27/64 (42%), Positives = 32/64 (50%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEADYR 64
NGG C+ C+C G+ G NC +A C C NGG C P KC C G G +CE
Sbjct: 188 MNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKC 247
Query: 65 TGPC 68
PC
Sbjct: 248 PQPC 251
Score = 56.0 bits (135), Expect = 3e-11
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEADYR 64
RNGG C C C G+ G +C +A C C+NGG C+ P C C G+ G C+
Sbjct: 156 RNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANC 215
Query: 65 TGPC 68
+ C
Sbjct: 216 STTC 219
Score = 54.5 bits (131), Expect = 8e-11
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEADY 63
RNGG C+G ++C C GY+GD C + C+ C G C P+KC C G+ GR C Y
Sbjct: 252 RNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRY 310
Score = 51.4 bits (123), Expect = 9e-10
Identities = 17/57 (29%), Positives = 20/57 (35%)
Query: 12 GGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEADYRTGPC 68
+ C +AEC C NGG C C C G+ G CE T C
Sbjct: 131 NTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRC 187
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 43.5 bits (103), Expect = 4e-07
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEAD 62
GSC C C+ G++G C + P G C P +C C + G+ C+ D
Sbjct: 75 KHGSCKLPGDCRCQYGWQGLYCDKCIP-HPGCVHGICNEPWQCLCETNWGGQLCDKD 130
Score = 42.7 bits (101), Expect = 7e-07
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAECKE-PCLNGGRCIGPDKCACLYGYAGRRCE 60
+C C G+ G C A C++ G C P C C YG+ G C+
Sbjct: 42 GHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD 97
Score = 40.4 bits (95), Expect = 6e-06
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCG-EAECKEPCLNGGRCIGPDKCACLYGYAGRRCEAD 62
+ GS G + C Y G C ++ C C+ G+ G C
Sbjct: 9 HHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRA 66
Score = 39.7 bits (93), Expect = 1e-05
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCG----EAECKEPCLNGGRCIGPD----KCACLYGYAGR 57
G C +C+C + G C +PCLNGG C +C+C GY+G
Sbjct: 106 VHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
Query: 58 RCE 60
CE
Sbjct: 166 NCE 168
Score = 29.3 bits (66), Expect = 0.067
Identities = 7/37 (18%), Positives = 8/37 (21%)
Query: 32 CKEPCLNGGRCIGPDKCACLYGYAGRRCEADYRTGPC 68
+ G G C Y G C R
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDD 39
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 43.0 bits (100), Expect = 8e-07
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
G + L + C +AEC C NGG C C C G+ G CE
Sbjct: 128 SEGNTILXT----PQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCE 179
Score = 29.9 bits (66), Expect = 0.042
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPC 36
RNGG C C C G+ G +C +
Sbjct: 156 RNGGFCNERRICECPDGFHGPHCEGTKHHHHH 187
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 42.2 bits (100), Expect = 8e-07
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 5 RNGGSCL---GGTRCVCRAGYKGDNCGEA--EC-KEPCLNGGRCIGPD---KCACLYGYA 55
+N +CL G +C+C GY+G +C EC PCL+ GRC+ +C C G+
Sbjct: 54 QNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 113
Query: 56 GRRCEAD 62
G C+ D
Sbjct: 114 GHLCQVD 120
Score = 42.2 bits (100), Expect = 9e-07
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 5 RNGGSC---LGGTRCVCRAGYKGDNCGEA--ECK-EPCLNGGRCIGPD---KCACLYGYA 55
+ G C LG C C GY G C EC PC N C+ +C C+ GY
Sbjct: 16 EHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYE 75
Query: 56 GRRCEAD 62
G CE +
Sbjct: 76 GVHCEVN 82
Score = 29.5 bits (67), Expect = 0.048
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 35 PCLNGGRCIGPD---KCACLYGYAGRRCEADY 63
PC + G+CI +C CL GY G RCE D
Sbjct: 14 PCEHAGKCINTLGSFECQCLQGYTGPRCEIDV 45
Score = 24.9 bits (55), Expect = 2.1
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 6 NGGSC---LGGTRCVCRAGYKGDNCGEA--ECK-EPCLNGG 40
+ G C + +C C G+ G C +
Sbjct: 93 HNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN 133
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 39.7 bits (93), Expect = 8e-06
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 5 RNGGSC----------LGGTRCVCRAGYKGDNCGEA--ECK-EPCLNGGRC---IGPDKC 48
NGG+C G C C G+ G +C EC+ EPC NGG C + C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 49 ACLYGYAGRRCEAD 62
C + GR C+
Sbjct: 121 ECPGEFMGRNCQYK 134
Score = 36.6 bits (85), Expect = 1e-04
Identities = 23/88 (26%), Positives = 28/88 (31%), Gaps = 30/88 (34%)
Query: 5 RNGGSCL-----GGTRCVCRAGYKGDNC--------------GEAECK-EPCLNGGRCIG 44
NGG CL G C C G+ NC C PC NGG C
Sbjct: 9 ENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEI 68
Query: 45 PD----------KCACLYGYAGRRCEAD 62
+ C C G+ G C+ +
Sbjct: 69 SEAYRGDTFIGYVCKCPRGFNGIHCQHN 96
Score = 28.1 bits (63), Expect = 0.16
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 35 PCLNGGRCIGPD-----KCACLYGYAGRRCEAD 62
PC NGG C+ C C G+ C +
Sbjct: 7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSV 39
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 37.8 bits (87), Expect = 7e-05
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEA----ECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
SC G G NC A + + G C D C Y + +
Sbjct: 602 KYISCAEC--LKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQD 658
Score = 33.5 bits (76), Expect = 0.003
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAE-CKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
G C C C +GY+ C E C PC C G G+ C
Sbjct: 570 GRGRCRCNV-CECHSGYQLPLCQECPGCPSPCGKYISCAEC--LKFEKGPFGKNCS 622
Score = 32.8 bits (74), Expect = 0.004
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCI-------GPDKCACLYGYAGR 57
G C G C C G++G C E CLN R + C C GY
Sbjct: 530 PGRGLCFCGK-CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLP 588
Query: 58 RCE 60
C+
Sbjct: 589 LCQ 591
Score = 29.7 bits (66), Expect = 0.065
Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 8 GSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGP-------DKCACLYGYAGRRCE 60
G CL T V G C NG C GP KC C G+ G C+
Sbjct: 493 GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 552
Query: 61 ADYRTGPC 68
+ T C
Sbjct: 553 CERTTEGC 560
Score = 25.8 bits (56), Expect = 1.2
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKE-PCLNGGRCI-GPDKCACLYGY 54
G +C C Y + + C+ GPD C +
Sbjct: 635 VKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPDGCGENLYF 686
Score = 23.9 bits (51), Expect = 5.9
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCAC 50
+G L C C GY G NC EC+ + G +
Sbjct: 438 HGKGFLECGICRCDTGYIGKNC---ECQTQGRSSQELEGSCRKDN 479
Score = 23.5 bits (50), Expect = 7.9
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 26 NCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
C + +G + C C GY G+ CE
Sbjct: 426 RCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCE 460
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 37.1 bits (85), Expect = 1e-04
Identities = 13/55 (23%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 7 GGSCLGGTRCVCRAGYKGDNCGEAEC-KEPCLNGGRCIGPDKCACLYGYAGRRCE 60
G C + C NGG C +C C Y G CE
Sbjct: 343 YLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCE 397
Score = 34.4 bits (78), Expect = 0.001
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 1 MSEFRNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCI-GPDKCACLYGYAGRRC 59
+ +NGG+C RC+C A Y G C + + C G C + A +G
Sbjct: 370 LLHCQNGGTCHNNVRCLCPAAYTGILC--EKLR--CEEAGSCGSDSGQGAPPHGTHHHHH 425
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 35.4 bits (82), Expect = 3e-04
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 5 RNGGSC---LGGTRCVCRAGYKGDNCGEAECKE----PCLNGGRCIGPD---KCACLYGY 54
NGG C + C C+ G++G NC E + G D C+C GY
Sbjct: 57 LNGGLCKDDINSYECWCQVGFEGKNC-ELDATCNIKNGRCKQFCKTGADSKVLCSCTTGY 115
Query: 55 AGRRCEAD 62
+
Sbjct: 116 RLAPDQKS 123
Score = 27.3 bits (61), Expect = 0.26
Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 3/40 (7%)
Query: 12 GGTRCVCRAGYKGDNCGEA--ECKE-PCLNGGRCIGPDKC 48
C C GY+ ++ PC P
Sbjct: 105 SKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPTTL 144
Score = 26.2 bits (58), Expect = 0.77
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 35 PCLNGGRC---IGPDKCACLYGYAGRRCEAD 62
PCLNGG C I +C C G+ G+ CE D
Sbjct: 55 PCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 35.1 bits (80), Expect = 6e-04
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEA----------ECKEPCLNGGRCIGPDKCACLYGYA 55
G CL G +CVC + G G+ E C G+C C C +
Sbjct: 497 QRGECLCG-QCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCS-CGDCLCDSDWT 554
Query: 56 GRRCEADYRTGPC 68
G C RT C
Sbjct: 555 GYYCNCTTRTDTC 567
Score = 31.6 bits (71), Expect = 0.011
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 9/63 (14%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGE--------AECKEPCLNGGRCIGPDKCACLYGYAGR 57
G C G C+C + + G C + C G+C G G
Sbjct: 538 GHGQCSCGD-CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGD 596
Query: 58 RCE 60
CE
Sbjct: 597 TCE 599
Score = 29.7 bits (66), Expect = 0.053
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGE-AECKEPCLNGGRCIGPDKCACLYGYAGRRCEADYR 64
G C G+ + G GD C + C + C C C G + +
Sbjct: 577 GRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC-----VECKKFDRGALHDENTC 631
Query: 65 TGPC 68
C
Sbjct: 632 NRYC 635
Score = 29.3 bits (65), Expect = 0.078
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 3/48 (6%)
Query: 12 GGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRC 59
C+ +G E C C + + K G C
Sbjct: 611 KKECVECKKFDRGALHDENTCNRYCRDEIESV---KELKDTGKDAVNC 655
Score = 27.7 bits (61), Expect = 0.31
Identities = 14/70 (20%), Positives = 19/70 (27%), Gaps = 16/70 (22%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNC---------------GEAECKEPCLNGGRCIGPDKCAC 50
NG C C G+ G C E + C G C+ +C C
Sbjct: 450 NGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL-CGQCVC 508
Query: 51 LYGYAGRRCE 60
G+
Sbjct: 509 HSSDFGKITG 518
Score = 25.4 bits (55), Expect = 2.1
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 24 GDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
C NG C C G+ G +CE
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 35.1 bits (80), Expect = 7e-04
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 5 RNGGSCLGGT-RCVCRAGYKGDNCGEA----------ECKEPCLNGGRCIGPDKCACLYG 53
++ CL C C G+KG C EA + + C NG C C C G
Sbjct: 253 KSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPG 312
Query: 54 YAGRRCEADYRTGPC 68
+ G +CE +
Sbjct: 313 WQGLQCEREGIPRMT 327
Score = 33.1 bits (75), Expect = 0.003
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCEADYR 64
NG C C+C G++G C P + PD G C+A
Sbjct: 296 NNGEMCDRFQGCLCSPGWQGLQCEREGI--PRMTPKIVDLPDHIEVNSGKFNPICKASGW 353
Query: 65 TGPC 68
P
Sbjct: 354 PLPT 357
Score = 29.3 bits (65), Expect = 0.072
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCI-GPDKCACLYGYAGRRCE 60
+ C A G C C+N G C +C C G+ GR CE
Sbjct: 177 FTSAFTRLIVRRCEAQKWGPEC--NHLCTACMNNGVCHEDTGECICPPGFMGRTCE 230
Score = 28.5 bits (63), Expect = 0.12
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 16/72 (22%)
Query: 5 RNGGSCLGGT-RCVCRAGYKGDNCGEA--------ECKEPCLNGGRCIG-------PDKC 48
N G C T C+C G+ G C +A CKE C C P C
Sbjct: 206 MNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGC 265
Query: 49 ACLYGYAGRRCE 60
+C G+ G +C
Sbjct: 266 SCATGWKGLQCN 277
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 33.8 bits (78), Expect = 0.001
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 5 RNGGSC---LGGTRCVCRAGYKGDNC----GEAECKEPCLNGGRCIGPD---KCACLYGY 54
+N G C LG C C G++G NC + + C C+C GY
Sbjct: 51 QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110
Query: 55 AGRRCEAD 62
Sbjct: 111 TLADNGKA 118
Score = 31.1 bits (71), Expect = 0.011
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 5 RNGGSCLGGTR---CVCRAGYKGDNCGEA--ECKE-PCLNGGRC---IGPDKCACLYGYA 55
R + N + +C+ PC N G+C +G C CL G+
Sbjct: 13 MEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
Query: 56 GRRCEAD 62
G+ CE
Sbjct: 73 GKNCELF 79
Score = 26.1 bits (58), Expect = 0.90
Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 6/44 (13%)
Query: 5 RNGGSCL---GGTRCVCRAGYKGDNCGEA--EC-KEPCLNGGRC 42
C C C GY + G+A PC
Sbjct: 90 DCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 33.9 bits (76), Expect = 0.002
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 16 CVCRAGYKGDNCGEAE-CKEPCLNGGRCIGPDKCACLYGYAGRRCEADYRTGPCYT 70
+ + DN + C + C GRC+ C C + G C+ + P
Sbjct: 520 FDKQQTWAIDNVYIGDGCLDMCSGHGRCVQ-GSCVCDEQWGGLYCDEPETSLPTQL 574
Score = 31.9 bits (71), Expect = 0.010
Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 5/69 (7%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGR----CIGPDKCACLYGYAGRRCE 60
G C+ G+ CVC + G C E E P + G C
Sbjct: 542 SGHGRCVQGS-CVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCG 600
Query: 61 ADYRTGPCY 69
A +
Sbjct: 601 AVASGLALH 609
Score = 27.3 bits (59), Expect = 0.39
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 31 ECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
+C+E C G CI KC C GY+G C+
Sbjct: 187 QCEEMCYGHGSCINGTKCICDPGYSGPTCK 216
Score = 26.9 bits (58), Expect = 0.54
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 8 GSCLGGTRCVCRAGYKGDNC 27
GSC+ GT+C+C GY G C
Sbjct: 196 GSCINGTKCICDPGYSGPTC 215
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 32.5 bits (74), Expect = 0.002
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 12 GGTRCVCRAGYKGDNCGEA-ECKE-PCLNGGRCIGPDK-----CACLYGYAGRRCEAD 62
C C +G + C E C NGG C C C G+AG+ CE D
Sbjct: 30 RVEYCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 32.8 bits (75), Expect = 0.004
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 34 EPCLNGGRC---IGPDKCACLYGYAGRRCEAD 62
+PCL+ G C I C C GY G CE
Sbjct: 11 QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELA 42
Score = 30.4 bits (69), Expect = 0.031
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 6 NGGSC---LGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCI-------GPDKCACLYGYA 55
+ GSC + G C C GY+G NC A+ + C C+C GY
Sbjct: 15 HNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYR 74
Query: 56 GRRCEADYRTGPCY 69
Sbjct: 75 LGEDHKQCVPHDQC 88
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 32.0 bits (73), Expect = 0.006
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 5 RNGGSC---LGGTRCVCRAGYKGDNC----GEAECKEPCLNGGRCIGPD---KCACLYGY 54
+N G C LG C C G++G NC + + C C+C GY
Sbjct: 51 QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110
Query: 55 AGRRCEAD 62
Sbjct: 111 TLADNGKA 118
Score = 28.6 bits (64), Expect = 0.14
Identities = 11/64 (17%), Positives = 14/64 (21%), Gaps = 9/64 (14%)
Query: 5 RNGGSCL---GGTRCVCRAGYKGDNCGEA--ECKE-PCLNGGRC---IGPDKCACLYGYA 55
C C C GY + G+A PC + G A
Sbjct: 90 DCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEA 149
Query: 56 GRRC 59
Sbjct: 150 PDSI 153
Score = 27.4 bits (61), Expect = 0.32
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 6 NGGSCLGGTR---CVCRAGYKGDNCGEA--ECKE-PCLNGGRC---IGPDKCACLYGYAG 56
R + N + +C+ PC N G+C +G C CL G+ G
Sbjct: 14 EETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 73
Query: 57 RRCEAD 62
+ CE
Sbjct: 74 KNCELF 79
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 31.5 bits (72), Expect = 0.008
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 13/71 (18%)
Query: 5 RNGGSC---LGGTRCVCRAGYKGDNCGEA--ECKE-PCLNGGRCIGPD-------KCACL 51
+NGGSC L C C ++G NC + NGG C C
Sbjct: 56 QNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCH 115
Query: 52 YGYAGRRCEAD 62
GY+
Sbjct: 116 EGYSLLADGVS 126
Score = 26.5 bits (59), Expect = 0.56
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 16 CVCRAGYKGDNCGEAECKE----PCLNGGRC---IGPDKCACLYGYAGRRCEAD 62
K ++ + PC NGG C + C CL + GR CE
Sbjct: 31 FKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 84
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 32.1 bits (72), Expect = 0.008
Identities = 16/68 (23%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPD---KCAC-LYGYAGRRCEA 61
+ G G GE CLNGG C D C C G+ G+ C
Sbjct: 168 DSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ 227
Query: 62 DYRTGPCY 69
Sbjct: 228 GKEEYIAT 235
Score = 24.4 bits (52), Expect = 3.9
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 35 PCLNGGRCIGPD---KCAC-LYGYAGRRC 59
C N G C+ C C + ++G C
Sbjct: 1024 SCSNQGVCLQQWDGFSCDCSMTSFSGPLC 1052
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 29.0 bits (66), Expect = 0.020
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 35 PCLNGGRC---IGPDKCACLYGYAGRRCE 60
PCLNGG C I +C C +G+ G+ CE
Sbjct: 10 PCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 25.9 bits (58), Expect = 0.30
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 5 RNGGSC---LGGTRCVCRAGYKGDNC 27
NGGSC + C C G++G NC
Sbjct: 12 LNGGSCKDDINSYECWCPFGFEGKNC 37
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 29.6 bits (66), Expect = 0.059
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 5 RNGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCI---GPDKCAC-LYGYAGRRCE 60
+ C G C C E + C N G C+ C C + ++G C
Sbjct: 168 SDALFCNGQIERGCE--GPSTTCQE----DSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN 221
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 28.5 bits (64), Expect = 0.10
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 6 NGGSC---LGGTRCVCRAGYKGDNC----GEAECK-EPCLNGGRC---IGPDKCACLYGY 54
G+C +G C CR+G++G C C + C +G +C+C GY
Sbjct: 24 GHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGY 83
Query: 55 AGRRCEAD 62
Sbjct: 84 KLGDDLLQ 91
Score = 26.6 bits (59), Expect = 0.52
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 25 DNCGEAECKEPCLNGGRC---IGPDKCACLYGYAGRRCEAD 62
E C C G C IG C C G+ GR C+ +
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE 51
Score = 23.5 bits (51), Expect = 6.9
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 12 GGTRCVCRAGYKGDNCGE--AECKE-PCLNGGRCI 43
G RC C GYK + + PC + +
Sbjct: 73 GWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRM 107
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 28.5 bits (63), Expect = 0.16
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 32 CKEPCLNGGRCI--GPDK--CACLY-GYAGRRCE 60
C PC + G C+ G D+ C C GY+G C
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 26.8 bits (59), Expect = 0.18
Identities = 14/53 (26%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 26 NCGEAECKEPCLNGGRCI-------GPDKCACLYGYAGRRCEADYRTGPCYTK 71
C E CLN C C C G+ G+RCE K
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLPK 58
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 28.1 bits (61), Expect = 0.22
Identities = 9/51 (17%), Positives = 10/51 (19%), Gaps = 1/51 (1%)
Query: 6 NGGSCLGGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAG 56
G C+ G C C GY Y G
Sbjct: 200 GHGDCISGV-CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITG 249
Score = 26.2 bits (56), Expect = 0.91
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 21 GYKGDNCG-EAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
+ D C C G CI C C GY +
Sbjct: 182 PFGLDGVYISEPCPSYCSGHGDCIS-GVCFCDLGYTAAQGT 221
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 26.3 bits (58), Expect = 0.26
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 33 KEPCLNGGRCIGPDK-----CACLYGYAGRRCE 60
CLNGG C+ + C C+ GY+G RC+
Sbjct: 11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 27.0 bits (59), Expect = 0.44
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 32 CKEPCLNGGRCI--GPD--KCACLY-GYAGRRCE 60
C PC N G C+ G D KC C G+ G C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 26.6 bits (59), Expect = 0.59
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 29 EAECKEPCLNGGRC---IGPDKCACLYGYAGRRCE 60
A C G C I C C G++G +CE
Sbjct: 120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 26.7 bits (59), Expect = 0.62
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 30 AECKEPCLNGGRC---IGPDKCACLYGYAGRRCE 60
+ C G C I C C GY G +C+
Sbjct: 121 SCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 26.3 bits (58), Expect = 0.64
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 31 ECKEPCLNGGRCIGPDKCACLYGYAGRRCEADYRTGPC 68
C C C+ C C G++ C
Sbjct: 4 GCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETC 41
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 25.2 bits (55), Expect = 0.70
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 33 KEPCLNGGRCIGPDK-----CACLYGYAGRRCE 60
CL+ G C+ + C C+ GY G RC+
Sbjct: 11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 26.3 bits (57), Expect = 0.80
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 15 RCVCRAGYKGDNCGEAECKEPCLNGGRCIGPDKCACLYGYAGRRCE 60
RC+ A + C ++ C G C KC C + G C
Sbjct: 435 RCLPVASFNFSTCLSSKEGTICSGNGVCSNELKCVCNRHWIGSDCN 480
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 25.5 bits (56), Expect = 1.4
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 29 EAECKEPCLNGGRC---IGPDKCACLYGYAGRRCEADYRT 65
+ C G C IG C+C G+ G CE
Sbjct: 120 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDD 159
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 24.5 bits (53), Expect = 1.5
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 26 NCGEAECKEPCLNGGRCI-------GPDKCACLYGYAGRRCE 60
C E CLN C C C G+ G+RCE
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 24.7 bits (53), Expect = 3.2
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 12 GGTRCVCRAGYKGDNCGEAECKEPCLNGGRCIG 44
G C C A Y G+ P G+ G
Sbjct: 26 TGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKG 58
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 23.6 bits (50), Expect = 3.6
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 27 CGEAECKEPCLNGGRC--------IGPDKCACLYGYAGRRCE 60
C E E K C+NGG C C C G+ G RC
Sbjct: 6 CAEKE-KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 24.2 bits (52), Expect = 4.5
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 47 KCACLYGYAGRRCE 60
KC C G+ CE
Sbjct: 398 KCRCYPGWQAPWCE 411
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 23.6 bits (50), Expect = 6.9
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 12 GGTRCVCRAGYKGDNCGEAECKEPCLNGGRC-------IGPDKCACLYGY 54
G C+C G++ E + C + C G KC C G+
Sbjct: 19 IGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 68
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding;
HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 23.4 bits (51), Expect = 8.4
Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 23 KGDNCGEAECKEPC---LNGGRCI 43
D CG C+ C GG I
Sbjct: 30 NPDKCGHFLCERVCPVNRMGGEAI 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.144 0.517
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,138,916
Number of extensions: 56053
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 259
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)