RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11801
         (73 letters)



>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 27.3 bits (61), Expect = 0.037
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCEAD 62
          PC N   C+   G  +C C+ GY G  CE +
Sbjct: 8  PCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38



 Score = 23.9 bits (52), Expect = 0.61
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 5  RNGGSCL---GGTRCVCRAGYKGDNC 27
          +N  +CL   G  +C+C  GY+G +C
Sbjct: 10 QNDATCLDQIGEFQCICMPGYEGVHC 35


>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 42

 Score = 27.4 bits (61), Expect = 0.039
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCEAD 62
          PC + G+CI   G  +C CL GY G RCE D
Sbjct: 12 PCEHAGKCINTLGSFECQCLQGYTGPRCEID 42



 Score = 23.2 bits (50), Expect = 1.2
 Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 3/26 (11%)

Query: 5  RNGGSCL---GGTRCVCRAGYKGDNC 27
           + G C+   G   C C  GY G  C
Sbjct: 14 EHAGKCINTLGSFECQCLQGYTGPRC 39


>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 27.0 bits (60), Expect = 0.051
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCEADYR 64
          PC N G+C    G   C CL G+ G+ CE   R
Sbjct: 7  PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR 39



 Score = 23.5 bits (51), Expect = 1.1
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 5  RNGGSCL---GGTRCVCRAGYKGDNC 27
          +N G C    G   C C  G++G NC
Sbjct: 9  QNQGKCKDGLGEYTCTCLEGFEGKNC 34


>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 39

 Score = 26.6 bits (59), Expect = 0.057
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCE 60
          PCLNGG C       +C C +G+ G+ CE
Sbjct: 10 PCLNGGSCKDDINSYECWCPFGFEGKNCE 38



 Score = 23.9 bits (52), Expect = 0.66
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 5  RNGGSCL---GGTRCVCRAGYKGDNC 27
           NGGSC        C C  G++G NC
Sbjct: 12 LNGGSCKDDINSYECWCPFGFEGKNC 37


>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 48

 Score = 26.0 bits (57), Expect = 0.13
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 5/31 (16%)

Query: 35 PCLNGGRCIGPD-----KCACLYGYAGRRCE 60
           CL+ G C+  +      C C+ GY G RC+
Sbjct: 11 YCLHDGVCMYIEALDKYACNCVVGYIGERCQ 41


>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
          t-PA {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 25.6 bits (56), Expect = 0.16
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)

Query: 35 PCLNGGRCIGPDK-----CACLYGYAGRRCEAD 62
           C NGG C          C C  G+AG+ CE D
Sbjct: 5  RCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 37


>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
          [TaxId: 9823]}
          Length = 37

 Score = 25.4 bits (56), Expect = 0.17
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 35 PCLNGGRC---IGPDKCACLYGYAGRRCE 60
          PC NGG C   +    C CL  + GR CE
Sbjct: 9  PCQNGGSCKDQLQSYICFCLPAFEGRNCE 37



 Score = 23.1 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 5  RNGGSCL---GGTRCVCRAGYKGDNC 27
          +NGGSC        C C   ++G NC
Sbjct: 11 QNGGSCKDQLQSYICFCLPAFEGRNC 36


>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 39

 Score = 25.5 bits (56), Expect = 0.17
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)

Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCEAD 62
           C   G C+       C C  G++G +CE  
Sbjct: 8  SCSGHGECVETINNYTCKCDPGFSGLKCEQI 38


>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 53

 Score = 25.6 bits (56), Expect = 0.17
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)

Query: 35 PCLNGGRCIGPD-----KCACLYGYAGRRCE 60
           CLNGG C+  +      C C+ GY+G RC+
Sbjct: 13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43



 Score = 21.4 bits (45), Expect = 9.5
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 5/27 (18%)

Query: 6  NGGSC-----LGGTRCVCRAGYKGDNC 27
          NGG C     L    C C  GY GD C
Sbjct: 16 NGGVCMHIESLDSYTCNCVIGYSGDRC 42


>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 25.4 bits (56), Expect = 0.19
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCE 60
          PCL+ GRC+      +C C  G+ G  C+
Sbjct: 7  PCLHNGRCLDKINEFQCECPTGFTGHLCQ 35



 Score = 22.3 bits (48), Expect = 2.7
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)

Query: 5  RNGGSCL---GGTRCVCRAGYKGDNC 27
           + G CL      +C C  G+ G  C
Sbjct: 9  LHNGRCLDKINEFQCECPTGFTGHLC 34


>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 40

 Score = 25.1 bits (55), Expect = 0.22
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 35 PCLNGGRCI---GPDKCACLYGYAGRRCE 60
           C   G C+   G   C+C  G+ G  CE
Sbjct: 8  SCSKQGECLETIGNYTCSCYPGFYGPECE 36



 Score = 20.9 bits (44), Expect = 9.4
 Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 3/26 (11%)

Query: 5  RNGGSCL---GGTRCVCRAGYKGDNC 27
             G CL   G   C C  G+ G  C
Sbjct: 10 SKQGECLETIGNYTCSCYPGFYGPEC 35


>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 50

 Score = 25.6 bits (56), Expect = 0.23
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 4/34 (11%)

Query: 31 ECKEPCLNGGRCIGPD----KCACLYGYAGRRCE 60
          + K  C+ G            C C  GY G RCE
Sbjct: 11 QYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCE 44


>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 49

 Score = 25.2 bits (55), Expect = 0.28
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 4/34 (11%)

Query: 31 ECKEPCLNGGRCIGPD----KCACLYGYAGRRCE 60
             + C +G            C C  GY G RCE
Sbjct: 10 SHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCE 43


>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 23.8 bits (51), Expect = 1.2
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 8/38 (21%)

Query: 33 KEPCLNGGRCIGPD--------KCACLYGYAGRRCEAD 62
          K  C+NGG C             C C  G+ G RC  +
Sbjct: 11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48


>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
          IIa) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 48

 Score = 23.2 bits (50), Expect = 1.5
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 35 PCLNGGRCIGPD--KCACLYGYAGRRCEAD 62
           C +G    G     C C  G+ GR C+ +
Sbjct: 15 CCGHGTCIDGIGSFSCDCRSGWEGRFCQRE 44


>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 46

 Score = 22.8 bits (49), Expect = 2.1
 Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 33 KEPCLNGGRCIGPD----KCACLYGYAGRRCE 60
             CL+G      D     C C  GY G RCE
Sbjct: 11 NGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCE 42


>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
          module {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 42

 Score = 21.3 bits (45), Expect = 7.4
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 5/31 (16%)

Query: 35 PCLNGGRCIGPD----KCAC-LYGYAGRRCE 60
          PC + G C+       +C C   GY+G  C 
Sbjct: 9  PCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39


>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 40

 Score = 21.0 bits (44), Expect = 9.0
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 6/33 (18%)

Query: 36 CLNGGRCI------GPDKCACLYGYAGRRCEAD 62
          CLNGG C+          C C   + G+ CE D
Sbjct: 4  CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEID 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.144    0.517 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 297,256
Number of extensions: 13136
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 93
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)