BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11807
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W I KK CP C+ ++ +L
Sbjct: 35 CMHLFHQVCVDQWLITNKK--CPICRVDIEAQL 65
>pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 880
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 7/30 (23%)
Query: 29 KKQICPYCKEK-VDLKLMFVNLWEKPHVFY 57
K Q+CP+C EK +KL EKP+ FY
Sbjct: 142 KAQVCPHCNEKQYKIKL------EKPYNFY 165
>pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|A Chain A, Rnap At 3.2ang
pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 880
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 7/30 (23%)
Query: 29 KKQICPYCKEK-VDLKLMFVNLWEKPHVFY 57
K Q+CP+C EK +KL EKP+ FY
Sbjct: 142 KAQVCPHCGEKQFKIKL------EKPYNFY 165
>pdb|4HTY|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
pdb|4HU0|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
In Complex With Cellotetraose
Length = 359
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 46 FVNLWEKPHVFYGQL--LDWLRW----------LVAWQPVILALIQGVNYMLDLK 88
F ++ +P VF G+L W W + A P +AL+ G N+ DLK
Sbjct: 183 FYEIFNEPTVFNGRLGIATWAEWKAINEEAITIIQAHNPKAIALVAGFNWAYDLK 237
>pdb|2QZC|A Chain A, Crystal Structure Of A Putative Tena-like Thiaminase
(tena-1, Sso2206) From Sulfolobus Solfataricus P2 At
1.50 A Resolution
pdb|2QZC|B Chain B, Crystal Structure Of A Putative Tena-like Thiaminase
(tena-1, Sso2206) From Sulfolobus Solfataricus P2 At
1.50 A Resolution
Length = 214
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 47 VNLWEKPHVFYGQLLDWLRWLVAWQP 72
+N H++Y LDW ++LVAW P
Sbjct: 111 INYAYTRHLYYYANLDWNKFLVAWTP 136
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 53 PHVFYGQLLDWLRWLVAWQPVILALIQGVN 82
PH F G++ D L+ + P ++LI+GV+
Sbjct: 94 PHQFIGKICDQLKGHLKANPTGISLIKGVD 123
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 28 GKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVIL 75
G Q+ YC+E++ L L EKP L D WL W+ +
Sbjct: 65 GGSQVANYCRERMHLALAEEIAKEKP-----MLCDGDTWLEKWKKALF 107
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 28 GKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVIL 75
G Q+ YC+E++ L L EKP L D WL W+ +
Sbjct: 77 GGSQVANYCRERMHLALAEEIAKEKP-----MLCDGDTWLEKWKKALF 119
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 28 GKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVIL 75
G Q+ YC+E++ L L EKP L D WL W+ +
Sbjct: 62 GGSQVANYCRERMHLALAEEIAKEKP-----MLSDGDTWLEKWKKALF 104
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 49 LWEKPHVFYGQLLDWLRWLVAW 70
L + H YGQ D+ WL W
Sbjct: 38 LLDALHALYGQRADYASWLAQW 59
>pdb|3CZE|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Tris Complex
pdb|3CZG|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Glucose Complex
Length = 644
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 49 LWEKPHVFYGQLLDWLRWLVAW 70
L + H YGQ D+ WL W
Sbjct: 38 LLDALHALYGQRADYASWLAQW 59
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 50 WEKPHVFYGQLLDWLRWLVAW 70
W PH+ G+ +WL+ LV W
Sbjct: 424 WVPPHIKEGRYGEWLKNLVDW 444
>pdb|3KG8|A Chain A, Dehydratase Domain From Curj Module Of Curacin Polyketide
Synthase
pdb|3KG8|B Chain B, Dehydratase Domain From Curj Module Of Curacin Polyketide
Synthase
Length = 308
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 30 KQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLR--WL 67
++I C +K+D ++ +LW++ + GQ W+ WL
Sbjct: 152 EEIQARCSQKIDSAEIYQHLWDR-QIHLGQSFRWIEQVWL 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.334 0.148 0.547
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,905,785
Number of Sequences: 62578
Number of extensions: 101499
Number of successful extensions: 274
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 13
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 45 (21.9 bits)