BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11807
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H920|RN121_HUMAN RING finger protein 121 OS=Homo sapiens GN=RNF121 PE=2 SV=1
Length = 327
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 70/82 (85%)
Query: 7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
T + C +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305
Query: 67 LVAWQPVILALIQGVNYMLDLK 88
LVAWQPVI+ ++QG+NY+L L+
Sbjct: 306 LVAWQPVIIGVVQGINYILGLE 327
>sp|Q6P360|RN121_XENTR RING finger protein 121 OS=Xenopus tropicalis GN=rnf121 PE=2 SV=1
Length = 327
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 69/82 (84%)
Query: 7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
T + C +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305
Query: 67 LVAWQPVILALIQGVNYMLDLK 88
LVAWQPVI+ L+QG+NY L L+
Sbjct: 306 LVAWQPVIIGLVQGINYCLGLE 327
>sp|Q6DD32|RN121_XENLA RING finger protein 121 OS=Xenopus laevis GN=rnf121 PE=2 SV=1
Length = 327
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 69/82 (84%)
Query: 7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
T + C +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305
Query: 67 LVAWQPVILALIQGVNYMLDLK 88
LVAWQPVI+ L+QG+NY L L+
Sbjct: 306 LVAWQPVIIGLVQGINYCLGLE 327
>sp|Q8R1Z9|RN121_MOUSE RING finger protein 121 OS=Mus musculus GN=Rnf121 PE=2 SV=1
Length = 327
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 70/82 (85%)
Query: 7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
T + C +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305
Query: 67 LVAWQPVILALIQGVNYMLDLK 88
LVAWQPVI+ L+QG++Y+L L+
Sbjct: 306 LVAWQPVIIGLVQGISYILGLE 327
>sp|Q8N4F7|RN175_HUMAN RING finger protein 175 OS=Homo sapiens GN=RNF175 PE=2 SV=2
Length = 328
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 69/91 (75%), Gaps = 3/91 (3%)
Query: 1 MDNDIMTCKTY---CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFY 57
+D + + TY C +FHEFCIRGWCIVGKKQ CPYCKEKVDLK M N WE+ H Y
Sbjct: 238 LDEEGLIENTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLY 297
Query: 58 GQLLDWLRWLVAWQPVILALIQGVNYMLDLK 88
GQ+LDWLR+LVAWQPV++ ++QG+ Y L L+
Sbjct: 298 GQILDWLRYLVAWQPVVIGIVQGIIYSLGLE 328
>sp|Q09251|RN121_CAEEL RING finger protein 121 OS=Caenorhabditis elegans GN=rnf-121 PE=3
SV=1
Length = 409
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 65/87 (74%)
Query: 2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLL 61
D D K C +FHEFCIRGW +VGK Q CPYCKE+VDL+ MF N WEKPH+FYG+LL
Sbjct: 323 DEDEKLYKLSCGHVFHEFCIRGWVVVGKLQTCPYCKERVDLQRMFKNPWEKPHLFYGKLL 382
Query: 62 DWLRWLVAWQPVILALIQGVNYMLDLK 88
DW+R+LV WQP+I+ +QG+ + L+
Sbjct: 383 DWIRYLVCWQPLIVTAVQGLTTWMGLE 409
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W I KK CP C+ +D +L
Sbjct: 920 CMHLFHQVCVDQWLITNKK--CPICRVDIDTQL 950
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W I KK CP C+ +D +L
Sbjct: 933 CMHLFHQVCVDQWLITNKK--CPICRVDIDTQL 963
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W I KK CP C+ +D +L
Sbjct: 925 CMHLFHQVCVDQWLITNKK--CPICRVDIDTQL 955
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W I KK CP C+ +D +L
Sbjct: 889 CMHLFHQVCVDQWLITNKK--CPICRVDIDTQL 919
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W I KK CP C+ ++ +L
Sbjct: 952 CMHLFHQVCVDQWLITNKK--CPICRVDIEAQL 982
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W I KK CP C+ ++ +L
Sbjct: 955 CMHLFHQVCVDQWLITNKK--CPICRVDIEAQL 985
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W I KK CP C+ ++ +L
Sbjct: 960 CMHLFHQVCVDQWLITNKK--CPICRVDIEAQL 990
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W + KK CP C+ ++ +L
Sbjct: 313 CMHLFHQLCVDQWLAMSKK--CPICRVDIETQL 343
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44
C+ +FH+ C+ W + KK CP C+ ++ +L
Sbjct: 312 CMHLFHQLCVDQWLAMSKK--CPICRVDIETQL 342
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 1 MDNDIMTCKTY---------CIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
MDN + C+ C IFH C+R W ++Q CP C+ V
Sbjct: 281 MDNVCIICREEMVSGAKRLPCNHIFHTSCLRSW--FQRQQTCPTCRMDV 327
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 1 MDNDIMTCKTY---------CIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
MDN + C+ C IFH C+R W ++Q CP C+ V
Sbjct: 281 MDNVCIICREEMVTGAKRLPCNHIFHTSCLRSW--FQRQQTCPTCRMDV 327
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 1 MDNDIMTCKTY---------CIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
MDN + C+ C IFH C+R W ++Q CP C+ V
Sbjct: 287 MDNVCIICREEMVTGAKRLPCNHIFHTSCLRSW--FQRQQTCPTCRMDV 333
>sp|O74853|FAP1H_SCHPO FKBP12-associated protein 1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=fap1 PE=1 SV=1
Length = 1077
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQ------ICPYCK 37
I +C T C +FH CIR WC +Q CPYC+
Sbjct: 210 IWSCGT-CYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQ 247
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKP 53
C IFH CI W I + + CP CK V L F W +P
Sbjct: 282 CKHIFHRLCIDPWLI--EHRTCPMCKLDVIKALGF---WVEP 318
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 9 KTYCIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
K C IFH C+R W ++Q CP C+ V
Sbjct: 304 KLPCNHIFHSSCLRSW--FQRQQTCPTCRMDV 333
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
C +FH C+R W ++Q CP C+ +
Sbjct: 310 CSHVFHAHCLRSW--FQRQQTCPTCRTDI 336
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
C +FH C+R W ++Q CP C+ +
Sbjct: 310 CSHVFHAHCLRSW--FQRQQTCPTCRTDI 336
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 1 MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43
MD+D + + C FH CI W G K CP C+ ++D++
Sbjct: 162 MDDDTIRLISTCNHSFHTICIDLW-FEGHKT-CPVCRRELDVE 202
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
C IFH C+R W ++Q CP C+ V
Sbjct: 307 CNHIFHTSCLRSW--FQRQQTCPTCRMDV 333
>sp|Q9FGI1|LTN1_ARATH E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana
GN=At5g58410 PE=3 SV=1
Length = 1873
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCK 37
C + FH+ C+ W K++CP C+
Sbjct: 1845 CKYKFHKACLDKWFYTSNKKLCPLCQ 1870
>sp|P48786|PRH_PETCR Pathogenesis-related homeodomain protein OS=Petroselinum crispum
GN=PRH PE=2 SV=1
Length = 1088
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 21/59 (35%)
Query: 1 MDNDIMTCKTYCIFIFHEFCI-------------RGWCIVGKKQICPYCKEKVD-LKLM 45
+ NDI+ C C FH+FC+ GW +CP C+ K+D +KL+
Sbjct: 591 LSNDIILCDGACDRGFHQFCLDPPLLKEYIPPDDEGW-------LCPGCECKIDCIKLL 642
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 9 KTYCIFIFHEFCIRGWCIVGKKQICPYCK 37
K C IFH C+R W ++Q CP C+
Sbjct: 302 KLPCGHIFHTTCLRSW--FQRQQTCPTCR 328
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 10 TYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD 41
T C +FH+ CI W + + CP C+ +D
Sbjct: 132 TTCYHVFHQECIDQW--LESNKTCPVCRRNLD 161
>sp|Q04996|HAT31_ARATH Homeobox protein HAT3.1 OS=Arabidopsis thaliana GN=HAT3.1 PE=2 SV=3
Length = 723
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 20/54 (37%)
Query: 1 MDNDIMTCKTYCIFIFHEFCI-------------RGWCIVGKKQICPYCKEKVD 41
+DNDI+ C +C FH++C+ GW +CP C K D
Sbjct: 278 VDNDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGW-------LCPGCDCKDD 324
>sp|Q6A009|LTN1_MOUSE E3 ubiquitin-protein ligase listerin OS=Mus musculus GN=Ltn1 PE=1
SV=3
Length = 1767
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKE 38
C+T C FH C+ W K CP C+E
Sbjct: 1735 CRT-CKKKFHSACLYKWFTSSNKSTCPLCRE 1764
>sp|E1C231|LTN1_CHICK E3 ubiquitin-protein ligase listerin OS=Gallus gallus GN=LTN1 PE=3
SV=1
Length = 1766
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKE 38
C+T C FH C+ W K CP C+E
Sbjct: 1734 CRT-CKKKFHSACLYKWFTSSNKSTCPLCRE 1763
>sp|O94822|LTN1_HUMAN E3 ubiquitin-protein ligase listerin OS=Homo sapiens GN=LTN1 PE=1
SV=6
Length = 1766
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKE 38
C+T C FH C+ W K CP C+E
Sbjct: 1734 CRT-CKKKFHSACLYKWFTSSNKSTCPLCRE 1763
>sp|O94400|YQF7_SCHPO PHD and RING finger domain-containing protein C126.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC126.07c PE=4 SV=1
Length = 571
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 9 KTYCIFIFHEFCIRGWCIVGKKQICPYCKE---KVDLKLMFV 47
K C FH C+ WC V CP C+ KVD+ L FV
Sbjct: 53 KIPCGHYFHNHCLESWCRVA--NTCPLCRTEFLKVDV-LEFV 91
>sp|O41933|MIR1_MHV68 E3 ubiquitin-protein ligase MIR1 OS=Murid herpesvirus 4 GN=K3
PE=1 SV=1
Length = 201
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43
CK C + H+ C+RGW ++Q C C +K
Sbjct: 24 CKGSCA-VSHQDCLRGWLETSRRQTCALCGTPYSMK 58
>sp|A0JM49|LTN1_XENTR E3 ubiquitin-protein ligase listerin OS=Xenopus tropicalis GN=ltn1
PE=2 SV=1
Length = 1696
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKE 38
C+T C FH C+ W K CP C+E
Sbjct: 1664 CRT-CKKKFHSECLYKWFTSSNKSTCPLCRE 1693
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 10 TYCIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
T C FH C+R W + + CP C +KV
Sbjct: 561 TPCNHYFHALCLRKWLYI--QDTCPMCHQKV 589
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 10 TYCIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
T C FH C+R W + + CP C +KV
Sbjct: 561 TPCNHYFHALCLRKWLYI--QDTCPMCHQKV 589
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 10 TYCIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
T C FH C+R W + + CP C +KV
Sbjct: 561 TPCNHYFHALCLRKWLYI--QDTCPMCHQKV 589
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.334 0.148 0.547
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,522,751
Number of Sequences: 539616
Number of extensions: 1260393
Number of successful extensions: 3794
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 3782
Number of HSP's gapped (non-prelim): 48
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)