Query psy11807
Match_columns 88
No_of_seqs 173 out of 1035
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 19:31:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ect_A Ring finger protein 126 99.5 1.4E-14 4.7E-19 88.3 4.1 50 2-53 26-75 (78)
2 2ecl_A Ring-box protein 2; RNF 99.5 1.3E-14 4.4E-19 90.4 2.9 41 3-45 38-79 (81)
3 1iym_A EL5; ring-H2 finger, ub 99.4 4.4E-14 1.5E-18 80.8 3.0 38 2-41 16-54 (55)
4 2l0b_A E3 ubiquitin-protein li 99.4 1.1E-13 3.7E-18 87.6 3.3 39 2-42 51-89 (91)
5 1x4j_A Ring finger protein 38; 99.4 4.7E-14 1.6E-18 85.7 1.5 40 2-43 34-73 (75)
6 2kiz_A E3 ubiquitin-protein li 99.4 9.5E-14 3.3E-18 82.8 2.6 40 2-43 25-64 (69)
7 3ng2_A RNF4, snurf, ring finge 99.4 1.2E-13 4E-18 82.3 2.7 42 3-46 26-67 (71)
8 3dpl_R Ring-box protein 1; ubi 99.4 1.8E-13 6.2E-18 90.3 3.6 37 6-44 67-103 (106)
9 2ep4_A Ring finger protein 24; 99.4 1.5E-13 5E-18 83.0 2.4 39 3-43 27-65 (74)
10 2xeu_A Ring finger protein 4; 99.3 2.7E-13 9.3E-18 78.9 2.3 41 4-46 20-60 (64)
11 2ecm_A Ring finger and CHY zin 99.3 5.4E-13 1.9E-17 76.0 3.2 36 4-41 19-54 (55)
12 2ea6_A Ring finger protein 4; 99.3 4.6E-13 1.6E-17 78.9 2.6 37 4-42 32-68 (69)
13 1v87_A Deltex protein 2; ring- 99.3 1.7E-12 5.9E-17 83.8 4.6 37 7-43 56-95 (114)
14 2djb_A Polycomb group ring fin 99.3 1.8E-12 6.2E-17 78.2 3.3 42 6-49 27-69 (72)
15 4a0k_B E3 ubiquitin-protein li 99.2 7.5E-13 2.5E-17 89.2 0.0 37 6-44 78-114 (117)
16 2ecy_A TNF receptor-associated 99.2 4.6E-12 1.6E-16 75.1 3.4 39 6-45 27-65 (66)
17 2d8t_A Dactylidin, ring finger 99.2 2.1E-12 7.1E-17 77.7 1.9 40 5-46 26-65 (71)
18 1g25_A CDK-activating kinase a 99.2 1E-11 3.6E-16 73.3 4.6 40 8-48 22-61 (65)
19 4ap4_A E3 ubiquitin ligase RNF 99.2 1.2E-11 3.9E-16 80.2 4.5 42 4-47 24-65 (133)
20 1chc_A Equine herpes virus-1 r 99.2 3.1E-12 1.1E-16 75.8 1.5 35 6-42 18-52 (68)
21 3lrq_A E3 ubiquitin-protein li 99.2 9.3E-12 3.2E-16 79.7 3.6 43 6-49 34-77 (100)
22 2ct2_A Tripartite motif protei 99.2 1.4E-11 4.6E-16 75.7 4.1 39 7-45 32-71 (88)
23 2ecn_A Ring finger protein 141 99.2 3E-12 1E-16 76.4 0.8 35 8-44 28-62 (70)
24 2ysl_A Tripartite motif-contai 99.2 1E-11 3.6E-16 74.2 3.1 41 5-45 31-72 (73)
25 2ecw_A Tripartite motif-contai 99.2 3E-11 1E-15 73.3 4.9 44 5-48 30-77 (85)
26 1t1h_A Gspef-atpub14, armadill 99.2 1.6E-11 5.5E-16 74.5 3.6 43 5-48 19-61 (78)
27 4ayc_A E3 ubiquitin-protein li 99.2 1.1E-11 3.9E-16 83.2 3.2 37 5-43 64-100 (138)
28 2d8s_A Cellular modulator of i 99.2 1.4E-11 4.8E-16 77.6 3.3 38 8-45 31-73 (80)
29 2ecv_A Tripartite motif-contai 99.2 3.2E-11 1.1E-15 73.1 4.6 44 5-48 30-77 (85)
30 2yur_A Retinoblastoma-binding 99.1 2.5E-11 8.7E-16 73.7 3.8 38 5-42 26-64 (74)
31 2y43_A E3 ubiquitin-protein li 99.1 3.3E-11 1.1E-15 76.4 4.0 40 6-47 34-74 (99)
32 2egp_A Tripartite motif-contai 99.1 1.1E-11 3.8E-16 74.9 1.8 43 6-48 24-71 (79)
33 4ap4_A E3 ubiquitin ligase RNF 99.1 1.2E-11 4.2E-16 80.1 1.6 40 5-46 90-129 (133)
34 3fl2_A E3 ubiquitin-protein li 99.1 8.5E-11 2.9E-15 77.2 4.0 37 5-42 63-99 (124)
35 2csy_A Zinc finger protein 183 99.1 5.1E-11 1.8E-15 73.0 2.3 34 6-41 27-60 (81)
36 3ztg_A E3 ubiquitin-protein li 99.1 9.5E-11 3.3E-15 73.0 3.5 35 6-40 25-60 (92)
37 2ct0_A Non-SMC element 1 homol 99.0 6.9E-11 2.3E-15 74.1 2.6 34 11-44 33-66 (74)
38 1jm7_A BRCA1, breast cancer ty 99.0 1.4E-10 4.8E-15 74.1 3.8 43 6-48 33-76 (112)
39 2ckl_A Polycomb group ring fin 99.0 2.4E-10 8.1E-15 73.5 3.9 36 6-43 27-63 (108)
40 1rmd_A RAG1; V(D)J recombinati 99.0 2.9E-10 1E-14 73.7 3.6 41 5-46 34-74 (116)
41 3hct_A TNF receptor-associated 99.0 2.7E-10 9.3E-15 74.5 2.8 42 5-47 29-70 (118)
42 2ecj_A Tripartite motif-contai 99.0 4.3E-10 1.5E-14 64.2 3.2 32 5-36 26-58 (58)
43 2ysj_A Tripartite motif-contai 98.9 6.1E-10 2.1E-14 65.1 3.4 32 5-36 31-63 (63)
44 1z6u_A NP95-like ring finger p 98.9 6.9E-10 2.4E-14 76.2 4.1 38 5-43 89-126 (150)
45 2ckl_B Ubiquitin ligase protei 98.9 6.6E-10 2.2E-14 76.1 3.9 35 7-42 67-102 (165)
46 3l11_A E3 ubiquitin-protein li 98.8 4.2E-10 1.4E-14 72.9 0.6 37 5-42 26-62 (115)
47 2y1n_A E3 ubiquitin-protein li 98.8 2.8E-09 9.7E-14 83.9 3.1 43 2-45 340-382 (389)
48 1jm7_B BARD1, BRCA1-associated 98.8 2E-09 6.7E-14 70.3 1.7 37 6-46 34-71 (117)
49 1bor_A Transcription factor PM 98.7 1.8E-09 6.2E-14 62.7 0.7 34 5-43 17-50 (56)
50 2kr4_A Ubiquitin conjugation f 98.7 5.6E-09 1.9E-13 65.5 2.4 42 5-48 25-66 (85)
51 4ic3_A E3 ubiquitin-protein li 98.7 8E-09 2.7E-13 62.9 2.2 36 2-43 32-68 (74)
52 2kre_A Ubiquitin conjugation f 98.7 9.2E-09 3.1E-13 66.6 2.6 41 6-48 41-81 (100)
53 2c2l_A CHIP, carboxy terminus 98.7 1.1E-08 3.7E-13 73.1 3.0 43 5-48 219-261 (281)
54 3hcs_A TNF receptor-associated 98.6 1.1E-08 3.7E-13 70.1 2.8 41 6-47 30-70 (170)
55 3knv_A TNF receptor-associated 98.6 4.6E-09 1.6E-13 71.5 0.5 36 6-42 43-78 (141)
56 1vyx_A ORF K3, K3RING; zinc-bi 98.6 1.5E-08 5E-13 60.7 2.4 34 9-42 21-59 (60)
57 1wgm_A Ubiquitin conjugation f 98.6 2E-08 6.8E-13 64.8 3.1 42 5-48 33-75 (98)
58 1e4u_A Transcriptional repress 98.6 4.6E-08 1.6E-12 60.9 3.9 35 10-45 31-65 (78)
59 2vje_A E3 ubiquitin-protein li 98.6 1.9E-08 6.5E-13 60.0 1.9 39 2-42 16-57 (64)
60 2vje_B MDM4 protein; proto-onc 98.5 3.8E-08 1.3E-12 58.5 1.6 35 6-42 19-56 (63)
61 3k1l_B Fancl; UBC, ring, RWD, 98.4 2.2E-08 7.6E-13 78.9 -0.1 35 9-43 331-374 (381)
62 2yu4_A E3 SUMO-protein ligase 98.4 1.3E-07 4.3E-12 60.0 3.0 43 6-48 19-69 (94)
63 2ecg_A Baculoviral IAP repeat- 98.4 1.9E-07 6.5E-12 56.7 2.9 35 2-42 33-68 (75)
64 2f42_A STIP1 homology and U-bo 98.3 3.4E-07 1.2E-11 65.4 3.6 42 6-48 118-159 (179)
65 2yho_A E3 ubiquitin-protein li 98.2 5.2E-07 1.8E-11 55.9 2.5 36 2-43 26-62 (79)
66 2ea5_A Cell growth regulator w 98.2 6.4E-07 2.2E-11 54.1 2.7 36 2-43 23-59 (68)
67 2bay_A PRE-mRNA splicing facto 98.1 1.3E-06 4.5E-11 52.0 1.7 42 6-49 15-57 (61)
68 3htk_C E3 SUMO-protein ligase 98.0 1.5E-06 5.3E-11 65.7 1.9 43 6-48 194-238 (267)
69 3vk6_A E3 ubiquitin-protein li 98.0 3.4E-06 1.2E-10 56.0 3.2 37 6-43 14-50 (101)
70 3t6p_A Baculoviral IAP repeat- 97.9 1.9E-06 6.5E-11 66.4 0.9 36 2-43 303-339 (345)
71 3nw0_A Non-structural maintena 97.8 6E-06 2E-10 60.7 2.2 33 11-43 198-230 (238)
72 1wim_A KIAA0161 protein; ring 97.6 8.4E-06 2.9E-10 51.0 -0.3 36 10-45 24-69 (94)
73 2lri_C Autoimmune regulator; Z 83.3 0.49 1.7E-05 28.2 1.5 31 10-40 28-60 (66)
74 1f62_A Transcription factor WS 74.5 0.66 2.2E-05 25.6 0.1 29 11-39 20-50 (51)
75 3i2d_A E3 SUMO-protein ligase 73.6 2.1 7.1E-05 33.5 2.7 44 6-49 262-307 (371)
76 4fo9_A E3 SUMO-protein ligase 72.3 2.4 8.1E-05 33.0 2.8 44 6-49 228-273 (360)
77 3m62_A Ubiquitin conjugation f 71.8 3.2 0.00011 36.1 3.7 42 5-48 902-944 (968)
78 2gmg_A Hypothetical protein PF 70.2 0.89 3.1E-05 29.9 -0.0 25 9-40 70-94 (105)
79 2ko5_A Ring finger protein Z; 70.2 1.2 4E-05 29.2 0.5 32 10-43 42-74 (99)
80 3asl_A E3 ubiquitin-protein li 68.8 0.43 1.5E-05 28.6 -1.7 29 11-39 38-69 (70)
81 1mm2_A MI2-beta; PHD, zinc fin 65.0 0.7 2.4E-05 26.8 -1.2 29 11-39 26-56 (61)
82 1oz9_A Hypothetical protein AQ 63.5 3.9 0.00013 27.8 2.1 19 70-88 106-124 (150)
83 1xm5_A Hypothetical UPF0054 pr 62.6 4.1 0.00014 27.9 2.1 19 70-88 105-123 (155)
84 1xax_A Hypothetical UPF0054 pr 61.2 4.1 0.00014 27.9 1.9 19 70-88 105-123 (154)
85 2e6s_A E3 ubiquitin-protein li 61.0 0.85 2.9E-05 27.9 -1.4 28 11-38 46-76 (77)
86 3mjh_B Early endosome antigen 56.3 2.4 8.2E-05 22.5 0.0 14 31-44 6-19 (34)
87 3shb_A E3 ubiquitin-protein li 55.4 0.85 2.9E-05 28.0 -2.1 29 11-39 46-77 (77)
88 1wil_A KIAA1045 protein; ring 54.8 5.5 0.00019 25.5 1.6 14 11-24 34-47 (89)
89 3v43_A Histone acetyltransfera 54.7 4.8 0.00016 25.6 1.3 18 6-23 26-43 (112)
90 1wen_A Inhibitor of growth fam 53.1 3.2 0.00011 24.8 0.3 28 12-41 37-67 (71)
91 2k16_A Transcription initiatio 52.6 1.6 5.6E-05 25.7 -1.1 32 11-42 38-71 (75)
92 2l5u_A Chromodomain-helicase-D 51.1 4.6 0.00016 23.2 0.7 29 11-39 28-58 (61)
93 1tvi_A Hypothetical UPF0054 pr 50.8 7.8 0.00027 27.2 2.0 19 70-88 115-133 (172)
94 2puy_A PHD finger protein 21A; 49.7 0.69 2.4E-05 26.5 -3.1 31 11-41 22-54 (60)
95 2jvx_A NF-kappa-B essential mo 49.2 4.7 0.00016 20.5 0.5 11 30-40 3-13 (28)
96 1weu_A Inhibitor of growth fam 49.1 5.2 0.00018 25.2 0.8 28 12-41 57-87 (91)
97 3ql9_A Transcriptional regulat 46.0 9.1 0.00031 25.6 1.6 29 11-39 74-111 (129)
98 3c6w_A P28ING5, inhibitor of g 45.9 2.1 7.2E-05 24.7 -1.4 26 12-39 30-58 (59)
99 2vnf_A ING 4, P29ING4, inhibit 45.7 2.1 7E-05 24.7 -1.4 25 12-38 31-58 (60)
100 2lbm_A Transcriptional regulat 44.8 16 0.00055 24.7 2.8 37 3-39 72-117 (142)
101 3o36_A Transcription intermedi 44.3 4 0.00014 27.8 -0.4 31 11-41 21-53 (184)
102 3ask_A E3 ubiquitin-protein li 44.0 3.1 0.00011 30.4 -1.0 29 11-39 194-225 (226)
103 2lcq_A Putative toxin VAPC6; P 43.6 5.5 0.00019 26.5 0.3 24 9-40 135-158 (165)
104 2jun_A Midline-1; B-BOX, TRIM, 43.3 5.4 0.00018 24.1 0.1 15 10-24 22-37 (101)
105 2kwj_A Zinc finger protein DPF 42.4 4.4 0.00015 25.9 -0.4 18 7-24 24-41 (114)
106 3u5n_A E3 ubiquitin-protein li 42.3 3 0.0001 29.1 -1.3 30 11-40 24-55 (207)
107 2ysm_A Myeloid/lymphoid or mix 41.7 4.7 0.00016 25.3 -0.3 18 8-25 24-41 (111)
108 2rsd_A E3 SUMO-protein ligase 40.3 0.75 2.6E-05 27.1 -4.0 27 12-38 32-64 (68)
109 2e6r_A Jumonji/ARID domain-con 40.3 0.87 3E-05 28.6 -4.0 29 11-39 36-66 (92)
110 1wd2_A Ariadne-1 protein homol 40.2 8.7 0.0003 22.2 0.7 16 29-44 5-20 (60)
111 2kdx_A HYPA, hydrogenase/ureas 35.7 14 0.00049 23.4 1.3 22 10-39 77-99 (119)
112 2l43_A N-teminal domain from h 32.9 5.8 0.0002 24.5 -0.9 35 11-45 47-81 (88)
113 2lqo_A Putative glutaredoxin R 30.9 10 0.00036 23.1 0.0 10 30-39 11-20 (92)
114 1wew_A DNA-binding family prot 30.8 6.3 0.00021 23.6 -1.0 29 11-39 37-72 (78)
115 3vhs_A ATPase wrnip1; zinc fin 30.7 12 0.00042 19.0 0.3 15 30-44 6-20 (29)
116 2ro1_A Transcription intermedi 30.6 11 0.00039 25.9 0.2 39 3-41 11-51 (189)
117 1l8d_A DNA double-strand break 30.3 14 0.00047 22.9 0.5 13 30-42 47-59 (112)
118 2yql_A PHD finger protein 21A; 29.5 3.5 0.00012 23.2 -2.2 28 11-38 26-55 (56)
119 2g6q_A Inhibitor of growth pro 28.1 3.9 0.00013 23.8 -2.3 26 12-39 32-60 (62)
120 2k9h_A Glycoprotein; hantaviru 27.9 24 0.00081 20.8 1.2 16 29-44 27-42 (57)
121 2jny_A Uncharacterized BCR; st 27.8 12 0.00041 22.3 -0.1 14 30-43 10-23 (67)
122 3fyb_A Protein of unknown func 26.5 27 0.00091 22.8 1.4 11 16-26 42-52 (104)
123 2o35_A Hypothetical protein DU 26.3 27 0.00093 22.8 1.4 11 16-26 43-53 (105)
124 3msz_A Glutaredoxin 1; alpha-b 26.3 9.4 0.00032 21.4 -0.8 11 30-40 11-21 (89)
125 2jmo_A Parkin; IBR, E3 ligase, 25.7 8.1 0.00028 23.2 -1.2 14 11-24 55-68 (80)
126 2kpi_A Uncharacterized protein 25.5 21 0.00071 20.4 0.7 13 31-43 11-23 (56)
127 2jr6_A UPF0434 protein NMA0874 25.4 22 0.00076 21.1 0.8 15 30-44 8-22 (68)
128 2hf1_A Tetraacyldisaccharide-1 25.1 22 0.00075 21.1 0.7 14 31-44 9-22 (68)
129 1lv3_A Hypothetical protein YA 24.7 19 0.00066 21.7 0.4 13 30-42 9-21 (68)
130 2pk7_A Uncharacterized protein 24.6 24 0.00082 21.0 0.8 14 30-43 8-21 (69)
131 1wep_A PHF8; structural genomi 23.9 25 0.00084 20.8 0.8 32 11-42 32-66 (79)
132 2js4_A UPF0434 protein BB2007; 23.1 23 0.00079 21.1 0.5 15 30-44 8-22 (70)
133 1zfo_A LAsp-1; LIM domain, zin 22.4 34 0.0012 16.8 1.1 13 30-42 3-15 (31)
134 1fo5_A Thioredoxin; disulfide 22.3 31 0.001 18.7 1.0 10 31-40 12-21 (85)
135 2ri7_A Nucleosome-remodeling f 21.9 13 0.00045 24.7 -0.8 30 11-40 28-60 (174)
136 3bbo_3 Ribosomal protein L33; 21.9 47 0.0016 19.7 1.8 15 30-44 49-63 (66)
137 1xwh_A Autoimmune regulator; P 21.8 6.5 0.00022 22.8 -2.1 29 11-39 25-55 (66)
138 3h8q_A Thioredoxin reductase 3 21.8 13 0.00046 22.7 -0.8 11 30-40 24-34 (114)
139 1ego_A Glutaredoxin; electron 21.4 16 0.00056 20.2 -0.4 11 30-40 8-18 (85)
140 3kqi_A GRC5, PHD finger protei 21.3 7.4 0.00025 23.0 -2.0 32 11-42 30-64 (75)
141 3lqh_A Histone-lysine N-methyl 21.0 35 0.0012 23.7 1.2 14 31-44 3-16 (183)
142 1nho_A Probable thioredoxin; b 20.5 36 0.0012 18.4 1.0 11 30-40 10-20 (85)
143 2klx_A Glutaredoxin; thioredox 20.3 25 0.00087 19.9 0.3 10 30-39 13-22 (89)
No 1
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=1.4e-14 Score=88.28 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=40.8
Q ss_pred CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccccCCCCC
Q psy11807 2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKP 53 (88)
Q Consensus 2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p~~~~ 53 (88)
+..+.+..++|||.||..||.+|+. ++.+||+||+++...++..+|-..+
T Consensus 26 ~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~~ 75 (78)
T 2ect_A 26 ALGESVRQLPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTGQNTATNPPGLT 75 (78)
T ss_dssp CTTSCEEECTTSCEEETTTTHHHHT--TTCSCTTTCCCCCCSCSCCCCSSCT
T ss_pred cCCCCEEEeCCCCeecHHHHHHHHH--cCCcCcCcCCccCCcccCCCCCCCC
Confidence 3445678889999999999999994 4579999999999888777765443
No 2
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-14 Score=90.44 Aligned_cols=41 Identities=20% Similarity=0.531 Sum_probs=33.0
Q ss_pred CCCceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807 3 NDIMTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM 45 (88)
Q Consensus 3 ~~e~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~ 45 (88)
+++.++.+ +|||.||.+||++|+. .+++||+||+++..+++
T Consensus 38 ~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 38 QEDCVVVWGECNHSFHNCCMSLWVK--QNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp TTTCCEEEETTSCEEEHHHHHHHTT--TCCBCTTTCCBCCEEEE
T ss_pred CCceEEEeCCCCCccChHHHHHHHH--hCCCCCCcCCCcchhhc
Confidence 44555566 5999999999999984 46799999999887654
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.44 E-value=4.4e-14 Score=80.84 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=31.8
Q ss_pred CCCCceeecC-CCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807 2 DNDIMTCKTY-CIFIFHEFCIRGWCIVGKKQICPYCKEKVD 41 (88)
Q Consensus 2 ~~~e~~~~L~-C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~ 41 (88)
+.++.+..++ |||.||.+||.+|+. ++.+||+||+++.
T Consensus 16 ~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 16 EDGEEARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTVV 54 (55)
T ss_dssp CTTSCCEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred cCCCceEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence 3456678887 999999999999984 5789999999864
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=87.56 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=33.1
Q ss_pred CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
+.++.++.++|||.||..||.+|+. ++.+||+||+++..
T Consensus 51 ~~~~~~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 51 VKGDVATELPCHHYFHKPCVSIWLQ--KSGTCPVCRCMFPP 89 (91)
T ss_dssp CTTCEEEEETTTEEEEHHHHHHHHT--TTCBCTTTCCBSSC
T ss_pred cCCCcEEecCCCChHHHHHHHHHHH--cCCcCcCcCccCCC
Confidence 3456788899999999999999994 56799999998754
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=4.7e-14 Score=85.68 Aligned_cols=40 Identities=20% Similarity=0.549 Sum_probs=33.4
Q ss_pred CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
+.++.++.++|||.||.+||.+|+.. +.+||+||+++...
T Consensus 34 ~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 34 ESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGPS 73 (75)
T ss_dssp CBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCCC
T ss_pred CCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCCC
Confidence 34556788999999999999999963 57999999988654
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=9.5e-14 Score=82.78 Aligned_cols=40 Identities=23% Similarity=0.776 Sum_probs=33.5
Q ss_pred CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
+.++.+..++|||.||..||.+|+.. +.+||+||+++...
T Consensus 25 ~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 25 EEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEAQ 64 (69)
T ss_dssp CSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCSC
T ss_pred cCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccCc
Confidence 34567888999999999999999963 56899999998654
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.39 E-value=1.2e-13 Score=82.30 Aligned_cols=42 Identities=26% Similarity=0.528 Sum_probs=35.0
Q ss_pred CCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807 3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF 46 (88)
Q Consensus 3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~ 46 (88)
+++....++|||.||..||.+|+.. +.+||+||+++..+++.
T Consensus 26 ~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 26 NGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCCCSCC
T ss_pred ccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccChhhee
Confidence 3456688999999999999999953 46999999999876654
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.38 E-value=1.8e-13 Score=90.29 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=32.2
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~ 44 (88)
.+..++|||.||.+||.+||. .+.+||+||+++..++
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEFQK 103 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBCCEEE
T ss_pred eEeecccCcEECHHHHHHHHH--cCCcCcCCCCcceeec
Confidence 577889999999999999994 4789999999987654
No 9
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=82.95 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=32.4
Q ss_pred CCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
..+.+..++|||.||..||.+|+.. +.+||+||+++...
T Consensus 27 ~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 27 PRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQL 65 (74)
T ss_dssp SSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSSC
T ss_pred CCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCcccccc
Confidence 4566778899999999999999963 46999999998543
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.35 E-value=2.7e-13 Score=78.90 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=34.3
Q ss_pred CCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807 4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF 46 (88)
Q Consensus 4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~ 46 (88)
++.+..++|||.||.+||.+|+.. +.+||+||+++..+++.
T Consensus 20 ~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 20 GRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp TCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTTCEE
T ss_pred CCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCcccee
Confidence 345688899999999999999963 67999999998876653
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.34 E-value=5.4e-13 Score=76.04 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=31.0
Q ss_pred CCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807 4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD 41 (88)
Q Consensus 4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~ 41 (88)
++.+..++|||.||.+||.+|+.. +.+||+||+++.
T Consensus 19 ~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 19 RVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp TSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 456888999999999999999964 379999999864
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=4.6e-13 Score=78.91 Aligned_cols=37 Identities=24% Similarity=0.559 Sum_probs=31.2
Q ss_pred CCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
++.+..++|||.||..||.+|+.. +.+||+||+++..
T Consensus 32 ~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 32 GRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp TCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred cCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 345588999999999999999953 6799999998764
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=1.7e-12 Score=83.80 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=30.7
Q ss_pred eeecCCCCcCcHhhHHHHHhc---CCCCCCcccccccccc
Q psy11807 7 TCKTYCIFIFHEFCIRGWCIV---GKKQICPYCKEKVDLK 43 (88)
Q Consensus 7 ~~~L~C~H~FH~~CI~~Wl~~---~~~~tCP~CR~~v~~~ 43 (88)
+..++|||.||.+||.+|+.. .++.+||+||+.+..+
T Consensus 56 ~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 56 GRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp EEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred eecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 447899999999999999953 2467999999998755
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=78.18 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=34.8
Q ss_pred ceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccccccC
Q psy11807 6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNL 49 (88)
Q Consensus 6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p 49 (88)
....+ +|||.||..||.+|+.. +.+||+||+++...++..++
T Consensus 27 ~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 27 DATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp SCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSCSCCCC
T ss_pred CcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcccccccC
Confidence 34555 99999999999999953 57999999999888776655
No 15
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.24 E-value=7.5e-13 Score=89.21 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=0.0
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~ 44 (88)
.+..++|+|.||.+||.+||. .+.+||+||+++..++
T Consensus 78 ~v~~~~C~H~FH~~CI~~Wl~--~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 78 TVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEFQK 114 (117)
T ss_dssp ---------------------------------------
T ss_pred ccccCCcCceEcHHHHHHHHH--cCCcCCCCCCeeeeec
Confidence 345569999999999999994 4789999999987654
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.6e-12 Score=75.11 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=32.3
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM 45 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~ 45 (88)
....++|||.||..||.+|+. ..+.+||+||+++..+++
T Consensus 27 ~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 27 SPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred CeeECCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 345589999999999999995 456789999999887654
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-12 Score=77.74 Aligned_cols=40 Identities=15% Similarity=0.491 Sum_probs=33.4
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF 46 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~ 46 (88)
.....++|||.||..||.+|+. ++.+||+||+.+..+.+.
T Consensus 26 ~~~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 26 VHPVSLPCKHVFCYLCVKGASW--LGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSEEEETTTEEEEHHHHHHCTT--CSSBCSSSCCBCCHHHHS
T ss_pred CCCEEccCCCHHHHHHHHHHHH--CCCcCcCcCchhCHhhcc
Confidence 4567889999999999999984 457999999999876543
No 18
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=1e-11 Score=73.34 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=33.6
Q ss_pred eecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807 8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~ 48 (88)
..++|||.|+..||.+|+. .++.+||+||+++..+++..+
T Consensus 22 ~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 22 MVNVCGHTLCESCVDLLFV-RGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp EECTTCCCEEHHHHHHHHH-TTSSSCTTTCCCCSSCCCEEE
T ss_pred ecCCCCCHhHHHHHHHHHH-cCCCcCCCCCCccccccceee
Confidence 5689999999999999985 346789999999987776554
No 19
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=1.2e-11 Score=80.22 Aligned_cols=42 Identities=24% Similarity=0.508 Sum_probs=35.1
Q ss_pred CCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807 4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV 47 (88)
Q Consensus 4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~ 47 (88)
++.++.++|||.||..||.+|+. ++.+||+||+++..+++..
T Consensus 24 ~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 24 GRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp TCCEEEETTCCEEEHHHHHHHHT--TCSBCTTTCCBCTTTCEEE
T ss_pred ccCeEecCCCChhhHHHHHHHHH--hCCCCCCCCCcCccccccc
Confidence 45568899999999999999994 4579999999998776544
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=3.1e-12 Score=75.79 Aligned_cols=35 Identities=29% Similarity=0.704 Sum_probs=30.3
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
....++|||.||..||.+|+. ++.+||+||+++..
T Consensus 18 ~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 18 YSMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVES 52 (68)
T ss_dssp CEEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCCC
T ss_pred CcEecCCCCeeHHHHHHHHHh--CcCcCcCCChhhHh
Confidence 358899999999999999995 35799999999864
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.20 E-value=9.3e-12 Score=79.75 Aligned_cols=43 Identities=21% Similarity=0.423 Sum_probs=35.0
Q ss_pred ceee-cCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccccC
Q psy11807 6 MTCK-TYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNL 49 (88)
Q Consensus 6 ~~~~-L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p 49 (88)
..+. ++|||.||..||.+|+... +.+||+||+++...++..+.
T Consensus 34 ~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 34 DARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp SEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCEECT
T ss_pred CccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCHHHhHhhH
Confidence 4556 9999999999999999643 36999999999877766553
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=75.71 Aligned_cols=39 Identities=13% Similarity=0.339 Sum_probs=32.5
Q ss_pred eeecCCCCcCcHhhHHHHHhcC-CCCCCcccccccccccc
Q psy11807 7 TCKTYCIFIFHEFCIRGWCIVG-KKQICPYCKEKVDLKLM 45 (88)
Q Consensus 7 ~~~L~C~H~FH~~CI~~Wl~~~-~~~tCP~CR~~v~~~~~ 45 (88)
.+.++|||.||..||.+|+..+ ...+||+||+.+...++
T Consensus 32 ~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 32 PKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred eEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 7889999999999999999642 24799999999876543
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3e-12 Score=76.40 Aligned_cols=35 Identities=23% Similarity=0.540 Sum_probs=30.7
Q ss_pred eecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807 8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44 (88)
Q Consensus 8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~ 44 (88)
..++|||.||..||.+|+. ++.+||+||+++...+
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 28 LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGAN 62 (70)
T ss_dssp EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCCC
T ss_pred cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCCC
Confidence 7889999999999999984 6789999999987544
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=74.20 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=33.1
Q ss_pred CceeecCCCCcCcHhhHHHHHhc-CCCCCCcccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIV-GKKQICPYCKEKVDLKLM 45 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~-~~~~tCP~CR~~v~~~~~ 45 (88)
.....++|||.||..||.+|+.. +.+.+||+||+++..+++
T Consensus 31 ~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 31 QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 45677899999999999999842 245699999999876653
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=3e-11 Score=73.25 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=35.9
Q ss_pred CceeecCCCCcCcHhhHHHHHhcC----CCCCCccccccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVG----KKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~----~~~tCP~CR~~v~~~~~~~~ 48 (88)
.....++|||.||..||.+|+... ....||+||+++...++..|
T Consensus 30 ~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecw_A 30 KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77 (85)
T ss_dssp SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence 345678999999999999999652 26799999999988766555
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.17 E-value=1.6e-11 Score=74.53 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=35.0
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~ 48 (88)
...+.++|||.|+..||.+|+. ..+.+||+||+++...++..|
T Consensus 19 ~~Pv~~~CgH~fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 19 KDPVIVSTGQTYERSSIQKWLD-AGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp SSEEEETTTEEEEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEEC
T ss_pred cCCEEcCCCCeecHHHHHHHHH-HCcCCCCCCcCCCChhhCccC
Confidence 3467789999999999999995 336899999999887665544
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=1.1e-11 Score=83.17 Aligned_cols=37 Identities=30% Similarity=0.786 Sum_probs=31.6
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
..++.++|||.||..||.+|+ .++.+||+||+++...
T Consensus 64 ~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 64 IEAVTLNCAHSFCSYCINEWM--KRKIECPICRKDIKSK 100 (138)
T ss_dssp SSEEEETTSCEEEHHHHHHHT--TTCSBCTTTCCBCCCE
T ss_pred CCceECCCCCCccHHHHHHHH--HcCCcCCCCCCcCCCC
Confidence 456789999999999999998 4578999999998654
No 28
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=77.62 Aligned_cols=38 Identities=21% Similarity=0.523 Sum_probs=31.7
Q ss_pred eecCCC-----CcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807 8 CKTYCI-----FIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM 45 (88)
Q Consensus 8 ~~L~C~-----H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~ 45 (88)
..+||+ |.||.+||++|+..+.+.+||+||+++..+..
T Consensus 31 l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 31 LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 468996 99999999999975545699999999877653
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.2e-11 Score=73.12 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=35.6
Q ss_pred CceeecCCCCcCcHhhHHHHHhc----CCCCCCccccccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIV----GKKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~----~~~~tCP~CR~~v~~~~~~~~ 48 (88)
.....++|||.||..||.+|+.. ....+||+||+.+...++..|
T Consensus 30 ~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 30 TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 34567899999999999999964 236799999999988766554
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.15 E-value=2.5e-11 Score=73.69 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=30.8
Q ss_pred CceeecC-CCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 5 IMTCKTY-CIFIFHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 5 e~~~~L~-C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
...+.++ |||.||..||.+|+......+||+||+++..
T Consensus 26 ~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 26 TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4456788 9999999999999965444699999997543
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.14 E-value=3.3e-11 Score=76.35 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=32.4
Q ss_pred ceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807 6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV 47 (88)
Q Consensus 6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~ 47 (88)
....+ +|||.||..||.+|+. .+.+||+||+.+...++..
T Consensus 34 ~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 34 IAMIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp SEEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCEE
T ss_pred CcCEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCChhhCCc
Confidence 34555 9999999999999994 4679999999988765543
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.14 E-value=1.1e-11 Score=74.91 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=34.8
Q ss_pred ceeecCCCCcCcHhhHHHHHhcC-----CCCCCccccccccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVG-----KKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~-----~~~tCP~CR~~v~~~~~~~~ 48 (88)
....++|||.|+..||.+|+... ...+||+||+++...++..|
T Consensus 24 ~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n 71 (79)
T 2egp_A 24 EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71 (79)
T ss_dssp SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence 35668999999999999998531 26799999999988776655
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=1.2e-11 Score=80.10 Aligned_cols=40 Identities=25% Similarity=0.522 Sum_probs=33.7
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF 46 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~ 46 (88)
.....++|||.||..||++|+.. +.+||+||+++..+++.
T Consensus 90 ~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 90 RLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp CCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGGGEE
T ss_pred cceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChhcce
Confidence 34578899999999999999963 56999999999877654
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.07 E-value=8.5e-11 Score=77.22 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=31.6
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
...+.++|||.||..||.+|+. .+..+||+||+++..
T Consensus 63 ~~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 63 FRPITTVCQHNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp SSEEECTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCcEEeeCCCcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 3567789999999999999996 445699999999876
No 35
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=5.1e-11 Score=73.00 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=29.5
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD 41 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~ 41 (88)
....++|||.||..||.+|+. ++.+||+||+++.
T Consensus 27 ~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 27 NPVVTKCRHYFCESCALEHFR--ATPRCYICDQPTG 60 (81)
T ss_dssp SEEECTTSCEEEHHHHHHHHH--HCSBCSSSCCBCC
T ss_pred CeeEccCCCHhHHHHHHHHHH--CCCcCCCcCcccc
Confidence 456789999999999999995 3678999999986
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.06 E-value=9.5e-11 Score=73.02 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=30.1
Q ss_pred ceeecC-CCCcCcHhhHHHHHhcCCCCCCccccccc
Q psy11807 6 MTCKTY-CIFIFHEFCIRGWCIVGKKQICPYCKEKV 40 (88)
Q Consensus 6 ~~~~L~-C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v 40 (88)
..+.++ |||.|+..||.+|+..+.+.+||+||+++
T Consensus 25 ~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 25 DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 456788 99999999999999655557999999986
No 37
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=6.9e-11 Score=74.12 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=29.0
Q ss_pred CCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807 11 YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL 44 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~ 44 (88)
.|+|.||.+||.+||+...+.+||+||+++..+.
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 8999999999999996544589999999987543
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=1.4e-10 Score=74.08 Aligned_cols=43 Identities=23% Similarity=0.464 Sum_probs=34.1
Q ss_pred ceeecCCCCcCcHhhHHHHHhcC-CCCCCccccccccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVG-KKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~-~~~tCP~CR~~v~~~~~~~~ 48 (88)
....++|||.||..||.+|+..+ ...+||+||+++...++..+
T Consensus 33 ~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 33 EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 45668999999999999999632 22489999999987766554
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.00 E-value=2.4e-10 Score=73.49 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=30.1
Q ss_pred ceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
....+ +|||.||..||.+|+. .+.+||+||+.+...
T Consensus 27 ~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 27 DATTIIECLHSFCKTCIVRYLE--TSKYCPICDVQVHKT 63 (108)
T ss_dssp SEEEETTTCCEEEHHHHHHHHT--SCSBCTTTCCBSCSS
T ss_pred CcCEeCCCCChhhHHHHHHHHH--hCCcCcCCCcccccc
Confidence 34555 9999999999999994 458999999998764
No 40
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=2.9e-10 Score=73.72 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=33.7
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF 46 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~ 46 (88)
.....++|||.|+..||.+|+.. .+.+||+||+++...++.
T Consensus 34 ~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 34 ADPVETSCKHLFCRICILRCLKV-MGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp SSEEECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGGCB
T ss_pred cCcEEcCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCHhhcc
Confidence 34567899999999999999964 356899999998876654
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.95 E-value=2.7e-10 Score=74.49 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=33.5
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV 47 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~ 47 (88)
...+.++|||.|+..||.+|+.. ++.+||+||+++...++..
T Consensus 29 ~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 29 REAVQTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp SSEEECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCEE
T ss_pred cCeEECCcCChhhHHHHHHHHhh-CCCCCCCCCCCcCHHhccc
Confidence 34577899999999999999963 2348999999998765543
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.3e-10 Score=64.24 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=26.2
Q ss_pred CceeecCCCCcCcHhhHHHHHhc-CCCCCCccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIV-GKKQICPYC 36 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~-~~~~tCP~C 36 (88)
.....++|||.||..||.+|+.. .++.+||+|
T Consensus 26 ~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 26 KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999999999752 467899998
No 43
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=6.1e-10 Score=65.11 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=26.5
Q ss_pred CceeecCCCCcCcHhhHHHHHhc-CCCCCCccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIV-GKKQICPYC 36 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~-~~~~tCP~C 36 (88)
.+.+.++|||.||..||.+|+.. +.+.+||+|
T Consensus 31 ~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 31 QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45677899999999999999963 246689998
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.93 E-value=6.9e-10 Score=76.17 Aligned_cols=38 Identities=16% Similarity=0.361 Sum_probs=31.9
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
.....++|||.|+..||.+|+. ....+||+||+++...
T Consensus 89 ~~pv~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 89 YQPVTTECFHNVCKDCLQRSFK-AQVFSCPACRHDLGQN 126 (150)
T ss_dssp SSEEECTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCTT
T ss_pred cCCEEcCCCCchhHHHHHHHHH-hCCCcCCCCCccCCCC
Confidence 3466799999999999999996 3445899999998776
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=6.6e-10 Score=76.06 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=29.2
Q ss_pred eeec-CCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 7 TCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 7 ~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
...+ +|||.||..||.+|+. ..+.+||+||+++..
T Consensus 67 p~~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 67 TMTTKECLHRFCADCIITALR-SGNKECPTCRKKLVS 102 (165)
T ss_dssp EEEETTTCCEEEHHHHHHHHH-TTCCBCTTTCCBCCS
T ss_pred cCEeCCCCChhHHHHHHHHHH-hCcCCCCCCCCcCCC
Confidence 4444 9999999999999996 346789999999854
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.84 E-value=4.2e-10 Score=72.87 Aligned_cols=37 Identities=16% Similarity=0.455 Sum_probs=31.1
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
...+.++|||.|+..||.+|+. ..+.+||.||+.+..
T Consensus 26 ~~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 26 VEPVTLPCNHTLCKPCFQSTVE-KASLCCPFCRRRVSS 62 (115)
T ss_dssp SSCEECTTSCEECHHHHCCCCC-TTTSBCTTTCCBCHH
T ss_pred CceeEcCCCCHHhHHHHHHHHh-HCcCCCCCCCcccCc
Confidence 3467789999999999999984 336799999999865
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=2.8e-09 Score=83.93 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=35.3
Q ss_pred CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807 2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM 45 (88)
Q Consensus 2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~ 45 (88)
+.-..+..++|||.||..||.+|+. +++.+||+||+++.....
T Consensus 340 e~~~~pv~lpCGH~FC~~Ci~~wl~-~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 340 ENDKDVKIEPCGHLMCTSCLTSWQE-SEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCCEEEETTCCEECHHHHHHHHH-HTCSBCTTTCCBCCEEEE
T ss_pred cCCCCeEEeCCCChhhHHHHHHHHh-cCCCCCCCCCCccCCcee
Confidence 3445678899999999999999995 256799999999877644
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=2e-09 Score=70.27 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=30.4
Q ss_pred ceeec-CCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807 6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF 46 (88)
Q Consensus 6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~ 46 (88)
..+.+ +|||.|+..||.+|+. .+||+||+++...++.
T Consensus 34 ~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 34 EPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp SCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCC
T ss_pred CccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCcccccc
Confidence 45667 9999999999999973 6899999998655443
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=1.8e-09 Score=62.71 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=28.6
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
...+.|+|||.|+..||.+| +.+||+||+++...
T Consensus 17 ~~p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 17 KCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPLG 50 (56)
T ss_dssp BCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSCC
T ss_pred CCeEEcCCCCcccHHHHccC-----CCCCCcCCcEeecC
Confidence 45678999999999999885 45899999998764
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.70 E-value=5.6e-09 Score=65.47 Aligned_cols=42 Identities=5% Similarity=-0.008 Sum_probs=35.0
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~ 48 (88)
...+.++|||+|-..||.+|+. .+.+||.||+++...++..|
T Consensus 25 ~dPV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 25 TDPVRLPSGTVMDRSIILRHLL--NSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp SSEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCGGGCEEC
T ss_pred cCCeECCCCCEECHHHHHHHHh--cCCCCCCCcCCCChHhcchH
Confidence 3567889999999999999996 36799999999887766554
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.66 E-value=8e-09 Score=62.95 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=30.0
Q ss_pred CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
+.......++|||. |+..|+.+| .+||+||+++...
T Consensus 32 ~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 32 DRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp SSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred CCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 44456778899999 999999999 5799999988643
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.66 E-value=9.2e-09 Score=66.61 Aligned_cols=41 Identities=7% Similarity=0.016 Sum_probs=34.6
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~ 48 (88)
..+.++|||+|-..||.+|+. .+.+||.||+++...++..|
T Consensus 41 dPV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 41 DPVRLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp SEEEETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEEC
T ss_pred CCeECCCCCEEchHHHHHHHH--cCCCCCCCCCCCChhhceEC
Confidence 567889999999999999984 46899999999887666554
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=1.1e-08 Score=73.08 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=34.9
Q ss_pred CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807 5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~ 48 (88)
..++.++|||+|...||.+|+..+ ..+||+||+++...++..|
T Consensus 219 ~dPv~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 219 REPCITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp SSEEECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCCGGGCEEC
T ss_pred cCCeECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCchhcCccc
Confidence 356788999999999999999643 3469999999987766554
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.65 E-value=1.1e-08 Score=70.12 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=33.0
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV 47 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~ 47 (88)
..++++|||.|...||.+|+.. ++.+||+||+++...++..
T Consensus 30 ~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 30 EAVQTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp SEEECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCEE
T ss_pred CcEECCCCCHHHHHHHHHHHHh-CCCCCCCCccCcchhhhhh
Confidence 4567899999999999999963 3359999999987765443
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.63 E-value=4.6e-09 Score=71.50 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=29.7
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
...+++|||.|+..||.+|+. .++.+||+||+++..
T Consensus 43 ~pv~~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 43 RPFQAQCGHRYCSFCLASILS-SGPQNCAACVHEGIY 78 (141)
T ss_dssp SEEECTTSCEEEHHHHHHHGG-GSCEECHHHHHTTCC
T ss_pred CcEECCCCCccCHHHHHHHHh-cCCCCCCCCCCcccc
Confidence 456789999999999999985 344589999998644
No 56
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.62 E-value=1.5e-08 Score=60.67 Aligned_cols=34 Identities=18% Similarity=0.447 Sum_probs=28.2
Q ss_pred ecCCC--C---cCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 9 KTYCI--F---IFHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 9 ~L~C~--H---~FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
.+||. | .||.+||.+|+..+++.+||+||.++..
T Consensus 21 ~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 21 FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 57865 4 8999999999976567899999998764
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.61 E-value=2e-08 Score=64.80 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=34.9
Q ss_pred CceeecCCC-CcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807 5 IMTCKTYCI-FIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 5 e~~~~L~C~-H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~ 48 (88)
...+.++|| |.|-..||.+|+. .+.+||+||+++...++..|
T Consensus 33 ~dPV~~~cG~htf~r~cI~~~l~--~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 33 CDPVVLPSSRVTVDRSTIARHLL--SDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp SSEEECTTTCCEEEHHHHHHHTT--TSCBCTTTCSBCCTTTSEEC
T ss_pred cCCeECCCCCeEECHHHHHHHHH--hCCCCCCCCCCCChhhceEc
Confidence 356778999 9999999999984 46799999999887666554
No 58
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.57 E-value=4.6e-08 Score=60.91 Aligned_cols=35 Identities=17% Similarity=0.459 Sum_probs=28.8
Q ss_pred cCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807 10 TYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM 45 (88)
Q Consensus 10 L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~ 45 (88)
++|||.|+..|+.++.. .....||.||+++..+.+
T Consensus 31 ~~CGH~fC~~Cl~~~~~-~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 31 CTCGYQICRFCWHRIRT-DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp STTSCCCCHHHHHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred cCCCCCcCHHHHHHHHh-cCCCCCCCCCCccCCCch
Confidence 34999999999999974 346799999999876654
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.57 E-value=1.9e-08 Score=60.02 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=30.4
Q ss_pred CCCCceeec--CCCCc-CcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 2 DNDIMTCKT--YCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 2 ~~~e~~~~L--~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
++......+ ||||. |-.+|+.+|.. .+..||+||+++..
T Consensus 16 ~~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 16 GRPKNGCIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQM 57 (64)
T ss_dssp SSCSCEEEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCCE
T ss_pred CCCCCEEEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchhc
Confidence 444455555 99999 78999999985 35689999999853
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.48 E-value=3.8e-08 Score=58.53 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=28.2
Q ss_pred ceeec--CCCCc-CcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 6 MTCKT--YCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 6 ~~~~L--~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
....+ ||||. |...|+.+|.. ++.+||+||+++..
T Consensus 19 ~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 19 DGNIIHGRTGHLVTCFHCARRLKK--AGASCPICKKEIQL 56 (63)
T ss_dssp CEEEEETTEEEEEECHHHHHHHHH--TTCBCTTTCCBCCE
T ss_pred CeEEEecCCCCHhHHHHHHHHHHH--hCCcCCCcCchhhc
Confidence 34445 99998 99999999985 34689999999853
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.44 E-value=2.2e-08 Score=78.87 Aligned_cols=35 Identities=26% Similarity=0.719 Sum_probs=27.6
Q ss_pred ecCCCCcCcHhhHHHHHhcCC---------CCCCcccccccccc
Q psy11807 9 KTYCIFIFHEFCIRGWCIVGK---------KQICPYCKEKVDLK 43 (88)
Q Consensus 9 ~L~C~H~FH~~CI~~Wl~~~~---------~~tCP~CR~~v~~~ 43 (88)
..+|||.||..||.+||.... .++||+||+++..+
T Consensus 331 n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 331 NAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 358999999999999996311 25799999987643
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=1.3e-07 Score=60.02 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=33.4
Q ss_pred ceeecC-CCCcCcHhhHHHHHhcC----CCCCCcc--cccc-ccccccccc
Q psy11807 6 MTCKTY-CIFIFHEFCIRGWCIVG----KKQICPY--CKEK-VDLKLMFVN 48 (88)
Q Consensus 6 ~~~~L~-C~H~FH~~CI~~Wl~~~----~~~tCP~--CR~~-v~~~~~~~~ 48 (88)
..+.++ |||+|-..||.+|+..+ +..+||+ |++. +...++..|
T Consensus 19 dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 19 KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 466775 99999999999999642 2469999 9987 776666554
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.9e-07 Score=56.67 Aligned_cols=35 Identities=20% Similarity=0.455 Sum_probs=28.4
Q ss_pred CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCccccccccc
Q psy11807 2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDL 42 (88)
Q Consensus 2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~ 42 (88)
+.......++|||. |...|+.+. ..||+||+++..
T Consensus 33 ~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 33 DRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp SSCCCBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCEEEecCCCHHHHHHHhhCC------CCCccCCceecC
Confidence 44556778899999 999999643 579999998865
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.32 E-value=3.4e-07 Score=65.36 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=34.4
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~ 48 (88)
.++.++|||+|-..||.+|+..+. .+||.||+++...++..|
T Consensus 118 DPV~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 118 EPCITPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp SEEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCEEC
T ss_pred CCeECCCCCEECHHHHHHHHHhCC-CCCCCCcCCCChhhCcch
Confidence 467789999999999999996432 379999999887766555
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.23 E-value=5.2e-07 Score=55.88 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=30.0
Q ss_pred CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
+....+..+||||. |-..|+.+| ..||+||+++...
T Consensus 26 ~~~~~~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 26 EEEINSTFCPCGHTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp SSBCCEEEETTCBCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred cccCcEEEECCCCHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 45566788999999 999999987 2799999998654
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=6.4e-07 Score=54.11 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=29.2
Q ss_pred CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
++...+..+||||. |...|+.. ..+||+||+++...
T Consensus 23 ~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 23 NGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp SSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred cCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhce
Confidence 45556788999999 99999984 25799999998653
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.05 E-value=1.3e-06 Score=52.02 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=34.7
Q ss_pred ceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccccccC
Q psy11807 6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNL 49 (88)
Q Consensus 6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p 49 (88)
..+.+ +|||+|=..||.+|+. ++.+||+.++++..+++..+.
T Consensus 15 dPV~~~~sG~~yer~~I~~~l~--~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 15 RPVLSPKSRTIFEKSLLEQYVK--DTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp SEEEETTTTEEEEHHHHHHHHH--HHSBCTTTCCBCCGGGCEECC
T ss_pred CCEEeCCCCcEEcHHHHHHHHH--hCCCCcCCcCCCChhhcEECc
Confidence 34555 9999999999999995 356899999999888876654
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.5e-06 Score=65.71 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=34.1
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCcc--ccccccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPY--CKEKVDLKLMFVN 48 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~--CR~~v~~~~~~~~ 48 (88)
++....|||.|-..||.+|+..+...+||+ ||+.+...++..|
T Consensus 194 PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 194 PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 444469999999999999985434468999 9999887776554
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.01 E-value=3.4e-06 Score=56.00 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=31.2
Q ss_pred ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
..+.+||+|+|..+|+..|.+ .+.++||.||++|..-
T Consensus 14 ygRmIPCkHvFCydCa~~~~~-~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 14 YGRMIPCKHVFCYDCAILHEK-KGDKMCPGCSDPVQRI 50 (101)
T ss_dssp EEEEETTCCEEEHHHHHHHHH-TTCCBCTTTCCBCSEE
T ss_pred EeeeccccccHHHHHHHHHHh-ccCCCCcCcCCeeeee
Confidence 457789999999999999975 4567999999998543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.92 E-value=1.9e-06 Score=66.41 Aligned_cols=36 Identities=17% Similarity=0.437 Sum_probs=29.8
Q ss_pred CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
+.-..+..+||||. |+..|+.+| ..||+||+++...
T Consensus 303 ~~~~~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 303 DKEVSVVFIPCGHLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp SSBCCEEEETTCCEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CcCCceEEcCCCChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 34456788899999 999999998 4799999998643
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.83 E-value=6e-06 Score=60.70 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=27.8
Q ss_pred CCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 11 YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
.|+|.||.+|+.+|++...+..||.|++.+...
T Consensus 198 ~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 198 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 399999999999998654456999999988655
No 72
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.58 E-value=8.4e-06 Score=50.97 Aligned_cols=36 Identities=22% Similarity=0.661 Sum_probs=27.8
Q ss_pred cCCCCcCcHhhHHHHHhc----C--CCCCCcc--cccc--cccccc
Q psy11807 10 TYCIFIFHEFCIRGWCIV----G--KKQICPY--CKEK--VDLKLM 45 (88)
Q Consensus 10 L~C~H~FH~~CI~~Wl~~----~--~~~tCP~--CR~~--v~~~~~ 45 (88)
.+|||.|..+|+.+++.. + ...+||. ||+. +....+
T Consensus 24 ~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 24 AQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp TTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 379999999999999853 1 2358999 9998 665443
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=83.32 E-value=0.49 Score=28.20 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=23.3
Q ss_pred cCCCCcCcHhhHHHHHhc--CCCCCCccccccc
Q psy11807 10 TYCIFIFHEFCIRGWCIV--GKKQICPYCKEKV 40 (88)
Q Consensus 10 L~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~v 40 (88)
-.|...||..|+...|.. ...=.||.|+...
T Consensus 28 d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 28 THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 368899999999988743 2234899998653
No 74
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.52 E-value=0.66 Score=25.60 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=19.6
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~ 39 (88)
.|.-.||..|+..=+.. ...=.||.|+..
T Consensus 20 ~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 20 ECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 78899999999643311 123369999763
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=73.58 E-value=2.1 Score=33.51 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=28.8
Q ss_pred ceeecCCCCc--CcHhhHHHHHhcCCCCCCcccccccccccccccC
Q psy11807 6 MTCKTYCIFI--FHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNL 49 (88)
Q Consensus 6 ~~~~L~C~H~--FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p 49 (88)
.++...|.|. |=.+=+..-......-.||+|.+.+...++.-+.
T Consensus 262 PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~ 307 (371)
T 3i2d_A 262 PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISE 307 (371)
T ss_dssp EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBH
T ss_pred cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcH
Confidence 4566679987 5443333333335567899999999887766553
No 76
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=72.28 E-value=2.4 Score=33.03 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=28.7
Q ss_pred ceeecCCCCc--CcHhhHHHHHhcCCCCCCcccccccccccccccC
Q psy11807 6 MTCKTYCIFI--FHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNL 49 (88)
Q Consensus 6 ~~~~L~C~H~--FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p 49 (88)
..+...|.|. |=..=+.........-.||+|.+.+...++.-+.
T Consensus 228 P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~ 273 (360)
T 4fo9_A 228 PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDG 273 (360)
T ss_dssp EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBH
T ss_pred CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcH
Confidence 4556678887 5544333333334567899999999877665543
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=71.82 E-value=3.2 Score=36.11 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=34.6
Q ss_pred CceeecCCC-CcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807 5 IMTCKTYCI-FIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN 48 (88)
Q Consensus 5 e~~~~L~C~-H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~ 48 (88)
..++.++-| +.|=...|++|+. +..+||.=|+++...++..|
T Consensus 902 ~DPVilpsG~~TydR~~I~~wl~--~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 902 KDPVILPASKMNIDRSTIKAHLL--SDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp SSEEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCEEC
T ss_pred hCCeEcCCCCEEECHHHHHHHHh--cCCCCCCCCCCCCccccccc
Confidence 356778998 5899999999995 36799999999987776655
No 78
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.21 E-value=0.89 Score=29.94 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=17.7
Q ss_pred ecCCCCcCcHhhHHHHHhcCCCCCCccccccc
Q psy11807 9 KTYCIFIFHEFCIRGWCIVGKKQICPYCKEKV 40 (88)
Q Consensus 9 ~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v 40 (88)
-..||+.| .++ ..+...||.|+...
T Consensus 70 C~~CG~~F----~~~---~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVF----KAE---INIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBC----CCC---SSCCSSCSSSCCCC
T ss_pred hhhCcCee----ccc---CCCCCCCcCCCCCc
Confidence 34799999 122 25668999999763
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=70.19 E-value=1.2 Score=29.21 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=25.9
Q ss_pred cCCC-CcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807 10 TYCI-FIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43 (88)
Q Consensus 10 L~C~-H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~ 43 (88)
+.|+ |.+...|+..=| +..+.||+|.+++..+
T Consensus 42 V~C~dHYLCl~CLtlmL--~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 42 VECNNHYLCLNCLTLLL--SVSNRCPICKMPLPTK 74 (99)
T ss_dssp EECSSCEEEHHHHHHTC--SSSSEETTTTEECCCC
T ss_pred eeecchhhHHHHHHHHH--hhccCCcccCCcCCcc
Confidence 3565 999999999987 4567899999988544
No 80
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=68.79 E-value=0.43 Score=28.59 Aligned_cols=29 Identities=24% Similarity=0.641 Sum_probs=19.6
Q ss_pred CCCCcCcHhhHHHHHhc--CC-CCCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GK-KQICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~-~~tCP~CR~~ 39 (88)
.|.-.||..|+..=|.. .. .=.||.|+.+
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 58889999999843321 11 3369999864
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=65.00 E-value=0.7 Score=26.80 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=20.2
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~ 39 (88)
.|.-.||..|+..=+.. ...=.||.|+.+
T Consensus 26 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 26 TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 58888999999854321 123369999865
No 82
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSG structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15
Probab=63.50 E-value=3.9 Score=27.80 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHhhhhccCC
Q psy11807 70 WQPVILALIQGVNYMLDLK 88 (88)
Q Consensus 70 w~p~~~~~~~~~~~~~~~~ 88 (88)
..-+.+.++||+.|++|||
T Consensus 106 ~~el~~L~vHG~LHLlGyD 124 (150)
T 1oz9_A 106 EEEVKRLIVHGIVHLLGYD 124 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4567889999999999996
No 83
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15
Probab=62.55 E-value=4.1 Score=27.93 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhhhhccCC
Q psy11807 70 WQPVILALIQGVNYMLDLK 88 (88)
Q Consensus 70 w~p~~~~~~~~~~~~~~~~ 88 (88)
..-+.+.++||+.|++||+
T Consensus 105 ~~el~~L~vHG~LHLlGyD 123 (155)
T 1xm5_A 105 EAHWAHMVVHGSLHLLGYD 123 (155)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4567888999999999996
No 84
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae}
Probab=61.24 E-value=4.1 Score=27.89 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHhhhhccCC
Q psy11807 70 WQPVILALIQGVNYMLDLK 88 (88)
Q Consensus 70 w~p~~~~~~~~~~~~~~~~ 88 (88)
..-+.+.++||+.|++||+
T Consensus 105 ~~el~~L~vHG~LHLlGyD 123 (154)
T 1xax_A 105 MAHWAHMVVHGSLHLLGYD 123 (154)
T ss_dssp HHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4567888999999999996
No 85
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.01 E-value=0.85 Score=27.89 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=18.8
Q ss_pred CCCCcCcHhhHHHHHhc--CC-CCCCccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GK-KQICPYCKE 38 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~-~~tCP~CR~ 38 (88)
.|...||..|+..=|.. .. .=.||.|+.
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68899999999843321 11 236999975
No 86
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=56.29 E-value=2.4 Score=22.51 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=10.6
Q ss_pred CCCccccccccccc
Q psy11807 31 QICPYCKEKVDLKL 44 (88)
Q Consensus 31 ~tCP~CR~~v~~~~ 44 (88)
-.||.|++.+...+
T Consensus 6 FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 6 FICPQCMKSLGSAD 19 (34)
T ss_dssp EECTTTCCEESSHH
T ss_pred cCCcHHHHHcCCHH
Confidence 47999999876543
No 87
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=55.45 E-value=0.85 Score=27.98 Aligned_cols=29 Identities=24% Similarity=0.633 Sum_probs=18.8
Q ss_pred CCCCcCcHhhHHHHHhc--CCC-CCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKK-QICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~-~tCP~CR~~ 39 (88)
.|.-.||..|+..=|.. ... =.||.|+++
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 58888999999864422 111 369999863
No 88
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=54.80 E-value=5.5 Score=25.51 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=12.7
Q ss_pred CCCCcCcHhhHHHH
Q psy11807 11 YCIFIFHEFCIRGW 24 (88)
Q Consensus 11 ~C~H~FH~~CI~~W 24 (88)
-|+-+||..|+++=
T Consensus 34 vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 34 VCTRVFHDGCLRRM 47 (89)
T ss_dssp SSSSCCCHHHHHHH
T ss_pred cccccccHhhcccc
Confidence 58999999999995
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=54.73 E-value=4.8 Score=25.57 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=13.7
Q ss_pred ceeecCCCCcCcHhhHHH
Q psy11807 6 MTCKTYCIFIFHEFCIRG 23 (88)
Q Consensus 6 ~~~~L~C~H~FH~~CI~~ 23 (88)
-+.=-.|+..||..|+..
T Consensus 26 Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 26 LISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CEECTTTCCEECHHHHTC
T ss_pred ceEhhhcCCCCCCchhcC
Confidence 344447999999999963
No 90
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.06 E-value=3.2 Score=24.78 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=19.8
Q ss_pred CC-CcCcHhhHHHHHhc--CCCCCCcccccccc
Q psy11807 12 CI-FIFHEFCIRGWCIV--GKKQICPYCKEKVD 41 (88)
Q Consensus 12 C~-H~FH~~CI~~Wl~~--~~~~tCP~CR~~v~ 41 (88)
|. .-||..|+. |.. ..+-.||.|+..-.
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 66 689999997 422 23457999987643
No 91
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=52.64 E-value=1.6 Score=25.74 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCccccccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKEKVDL 42 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~v~~ 42 (88)
.|.--||..|+..=... ...-.||.|+.++..
T Consensus 38 ~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 38 DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 57788999999754321 124579999987543
No 92
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=51.12 E-value=4.6 Score=23.17 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=21.0
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~ 39 (88)
.|.-.||..|+..=+.. ...=.||.|+++
T Consensus 28 ~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 28 TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 57788999999975421 234579999864
No 93
>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} SCOP: d.92.1.15
Probab=50.84 E-value=7.8 Score=27.20 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhhhhccCC
Q psy11807 70 WQPVILALIQGVNYMLDLK 88 (88)
Q Consensus 70 w~p~~~~~~~~~~~~~~~~ 88 (88)
..-+.+.++||+.|++|||
T Consensus 115 ~~el~~L~vHG~LHLlGYD 133 (172)
T 1tvi_A 115 EKELLEVVIHGILHLAGYD 133 (172)
T ss_dssp HHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 5577889999999999996
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=49.66 E-value=0.69 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=21.5
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCcccccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKEKVD 41 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~v~ 41 (88)
.|.-.||..|+..=+.. ...=.||.|+....
T Consensus 22 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 22 TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 68889999999854321 22346999987543
No 95
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=49.23 E-value=4.7 Score=20.49 Aligned_cols=11 Identities=27% Similarity=0.779 Sum_probs=9.0
Q ss_pred CCCCccccccc
Q psy11807 30 KQICPYCKEKV 40 (88)
Q Consensus 30 ~~tCP~CR~~v 40 (88)
+.+||+|+...
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 56899999865
No 96
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.13 E-value=5.2 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=19.5
Q ss_pred CC-CcCcHhhHHHHHhc--CCCCCCcccccccc
Q psy11807 12 CI-FIFHEFCIRGWCIV--GKKQICPYCKEKVD 41 (88)
Q Consensus 12 C~-H~FH~~CI~~Wl~~--~~~~tCP~CR~~v~ 41 (88)
|. .-||..|+. |.. ..+-.||.|+..-.
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 65 679999997 321 23557999987643
No 97
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=45.97 E-value=9.1 Score=25.61 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=20.4
Q ss_pred CCCCcCcHhhHHHHH------hc---CCCCCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWC------IV---GKKQICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl------~~---~~~~tCP~CR~~ 39 (88)
.|-..||..||.+=+ +. ...=.|+.|+.+
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 688999999999631 11 233579999754
No 98
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=45.93 E-value=2.1 Score=24.70 Aligned_cols=26 Identities=31% Similarity=0.660 Sum_probs=18.0
Q ss_pred CC-CcCcHhhHHHHHhc--CCCCCCcccccc
Q psy11807 12 CI-FIFHEFCIRGWCIV--GKKQICPYCKEK 39 (88)
Q Consensus 12 C~-H~FH~~CI~~Wl~~--~~~~tCP~CR~~ 39 (88)
|. .-||..|+. |.. ..+-.||.|+++
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 66 689999998 422 234579999753
No 99
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=45.69 E-value=2.1 Score=24.74 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=17.6
Q ss_pred CC-CcCcHhhHHHHHhc--CCCCCCccccc
Q psy11807 12 CI-FIFHEFCIRGWCIV--GKKQICPYCKE 38 (88)
Q Consensus 12 C~-H~FH~~CI~~Wl~~--~~~~tCP~CR~ 38 (88)
|. .-||..|+. |.. ..+-.||.|++
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 679999998 422 23457998875
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=44.78 E-value=16 Score=24.72 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=24.5
Q ss_pred CCCceeecCCCCcCcHhhHHHHHh---------cCCCCCCcccccc
Q psy11807 3 NDIMTCKTYCIFIFHEFCIRGWCI---------VGKKQICPYCKEK 39 (88)
Q Consensus 3 ~~e~~~~L~C~H~FH~~CI~~Wl~---------~~~~~tCP~CR~~ 39 (88)
+++-+.-=.|--+||..||.+=+. ....=.||.|+.+
T Consensus 72 GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 72 GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 333333347889999999996541 1334579999854
No 101
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=44.29 E-value=4 Score=27.79 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=22.0
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCcccccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKEKVD 41 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~v~ 41 (88)
.|.-.||..|+..-+.. ...=.||.|+..-.
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 68889999999765531 12246999997654
No 102
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=44.02 E-value=3.1 Score=30.41 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=16.8
Q ss_pred CCCCcCcHhhHHHHHhcCC---CCCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWCIVGK---KQICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~~~---~~tCP~CR~~ 39 (88)
.|.-.||..|+..=|..-. .=.||.|+.+
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 6888999999984332111 2369999864
No 103
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=43.60 E-value=5.5 Score=26.51 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=16.9
Q ss_pred ecCCCCcCcHhhHHHHHhcCCCCCCccccccc
Q psy11807 9 KTYCIFIFHEFCIRGWCIVGKKQICPYCKEKV 40 (88)
Q Consensus 9 ~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v 40 (88)
-..|||.|-.. .....||.|-.++
T Consensus 135 C~~Cg~~~~~~--------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 135 CIGCGRKFSTL--------PPGGVCPDCGSKV 158 (165)
T ss_dssp ESSSCCEESSC--------CGGGBCTTTCCBE
T ss_pred CCCCCCcccCC--------CCCCcCCCCCCcc
Confidence 34699988644 2345899999874
No 104
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=43.27 E-value=5.4 Score=24.13 Aligned_cols=15 Identities=13% Similarity=0.545 Sum_probs=14.2
Q ss_pred cCCCCcCcHhhHHH-H
Q psy11807 10 TYCIFIFHEFCIRG-W 24 (88)
Q Consensus 10 L~C~H~FH~~CI~~-W 24 (88)
+.|+|.|-..|++. |
T Consensus 22 ~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 22 VTCEVSYCDECLKATH 37 (101)
T ss_dssp TTTTEEECHHHHHHHS
T ss_pred CcCChHHhHHHCHHHh
Confidence 89999999999998 5
No 105
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.38 E-value=4.4 Score=25.90 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=14.3
Q ss_pred eeecCCCCcCcHhhHHHH
Q psy11807 7 TCKTYCIFIFHEFCIRGW 24 (88)
Q Consensus 7 ~~~L~C~H~FH~~CI~~W 24 (88)
+.=-.|+-.||..|+...
T Consensus 24 i~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 24 VSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp EECSSSCCEECTTTTTCC
T ss_pred eEeCCCCCccchhhCCCh
Confidence 444479999999999865
No 106
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=42.34 E-value=3 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=21.3
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCccccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKEKV 40 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~v 40 (88)
.|.-.||..|+..-+.. ...=.||.|+..-
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 58888999999765521 1224699999764
No 107
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=41.67 E-value=4.7 Score=25.29 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.6
Q ss_pred eecCCCCcCcHhhHHHHH
Q psy11807 8 CKTYCIFIFHEFCIRGWC 25 (88)
Q Consensus 8 ~~L~C~H~FH~~CI~~Wl 25 (88)
.=-.|+..||..|+...+
T Consensus 24 ~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 24 FCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp ECSSSCCEECTTTTTCCC
T ss_pred ECCCCCCCcChHHhCCcc
Confidence 334799999999998775
No 108
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=40.32 E-value=0.75 Score=27.12 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=16.7
Q ss_pred CCCcCcHhhHHHHH------hcCCCCCCccccc
Q psy11807 12 CIFIFHEFCIRGWC------IVGKKQICPYCKE 38 (88)
Q Consensus 12 C~H~FH~~CI~~Wl------~~~~~~tCP~CR~ 38 (88)
|.--||..|+.-=- ....+-.||.||.
T Consensus 32 C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 32 CQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp TCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 77789999983100 0012356999985
No 109
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.31 E-value=0.87 Score=28.56 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=19.6
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~ 39 (88)
.|.-.||..|+..=|.. ...=.||.|+..
T Consensus 36 ~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 36 GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 68888999999732211 123359999865
No 110
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.24 E-value=8.7 Score=22.17 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=12.3
Q ss_pred CCCCCccccccccccc
Q psy11807 29 KKQICPYCKEKVDLKL 44 (88)
Q Consensus 29 ~~~tCP~CR~~v~~~~ 44 (88)
....||.|+..|+..+
T Consensus 5 ~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCTTTCCCCSSCC
T ss_pred cceECcCCCCeeEeCC
Confidence 4468999999987654
No 111
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=35.68 E-value=14 Score=23.45 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=16.2
Q ss_pred cCCCCcCcHhhHHHHHhcCCCC-CCcccccc
Q psy11807 10 TYCIFIFHEFCIRGWCIVGKKQ-ICPYCKEK 39 (88)
Q Consensus 10 L~C~H~FH~~CI~~Wl~~~~~~-tCP~CR~~ 39 (88)
..|||.|-.. .... .||.|..+
T Consensus 77 ~~CG~~~e~~--------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 77 KDCSHVFKPN--------ALDYGVCEKCHSK 99 (119)
T ss_dssp SSSSCEECSC--------CSTTCCCSSSSSC
T ss_pred CCCCCEEeCC--------CCCCCcCccccCC
Confidence 4699998762 3345 79999876
No 112
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=32.88 E-value=5.8 Score=24.49 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=23.4
Q ss_pred CCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807 11 YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM 45 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~ 45 (88)
.|.-.||..|+..=+.-...=.||.|+.....+.+
T Consensus 47 ~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 47 MCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp SSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 67788999999743322334569999887655443
No 113
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=30.95 E-value=10 Score=23.11 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=8.1
Q ss_pred CCCCcccccc
Q psy11807 30 KQICPYCKEK 39 (88)
Q Consensus 30 ~~tCP~CR~~ 39 (88)
+..||.|++-
T Consensus 11 ~~~Cp~C~~a 20 (92)
T 2lqo_A 11 TSWCGYCLRL 20 (92)
T ss_dssp CTTCSSHHHH
T ss_pred CCCCHhHHHH
Confidence 5789999854
No 114
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.84 E-value=6.3 Score=23.57 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=19.7
Q ss_pred CCCCcCcHhhHHHHHh-------cCCCCCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWCI-------VGKKQICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~-------~~~~~tCP~CR~~ 39 (88)
.|..-||..|+.-=-. ...+-.||.|+..
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 5888999999952100 0135689999875
No 115
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.65 E-value=12 Score=18.99 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=10.7
Q ss_pred CCCCccccccccccc
Q psy11807 30 KQICPYCKEKVDLKL 44 (88)
Q Consensus 30 ~~tCP~CR~~v~~~~ 44 (88)
+-.||+|.+......
T Consensus 6 ~vqcpvcqq~mpaah 20 (29)
T 3vhs_A 6 QVQCPVCQQMMPAAH 20 (29)
T ss_dssp EEECTTTCCEEEGGG
T ss_pred eeeChHHHHhCcHHH
Confidence 357999998765544
No 116
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.61 E-value=11 Score=25.93 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCceeecCCCCcCcHhhHHHHHhc--CCCCCCcccccccc
Q psy11807 3 NDIMTCKTYCIFIFHEFCIRGWCIV--GKKQICPYCKEKVD 41 (88)
Q Consensus 3 ~~e~~~~L~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~v~ 41 (88)
+++-+.--.|.-.||..|+..=+.. ...-.||.|+..-.
T Consensus 11 ~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 11 PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 3444444468889999999754321 12336999997643
No 117
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.29 E-value=14 Score=22.94 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=10.6
Q ss_pred CCCCccccccccc
Q psy11807 30 KQICPYCKEKVDL 42 (88)
Q Consensus 30 ~~tCP~CR~~v~~ 42 (88)
...||+|..+++.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4579999998875
No 118
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.53 E-value=3.5 Score=23.15 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=18.1
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKE 38 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~ 38 (88)
.|.-.||..|+..=+.. ...=.||.|++
T Consensus 26 ~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 26 TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 67788999999854421 12335888764
No 119
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=28.10 E-value=3.9 Score=23.81 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=17.9
Q ss_pred CC-CcCcHhhHHHHHhc--CCCCCCcccccc
Q psy11807 12 CI-FIFHEFCIRGWCIV--GKKQICPYCKEK 39 (88)
Q Consensus 12 C~-H~FH~~CI~~Wl~~--~~~~tCP~CR~~ 39 (88)
|. .-||..|+. |.. ..+-.||.|+++
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 55 789999997 321 234579999764
No 120
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=27.89 E-value=24 Score=20.78 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=11.8
Q ss_pred CCCCCccccccccccc
Q psy11807 29 KKQICPYCKEKVDLKL 44 (88)
Q Consensus 29 ~~~tCP~CR~~v~~~~ 44 (88)
.+..||+|-....+.+
T Consensus 27 p~gqCPYC~~~~e~te 42 (57)
T 2k9h_A 27 INGQCPYCMTITEATE 42 (57)
T ss_dssp TTTBCTTTCCBCCSSH
T ss_pred CCCCCCcccCcCCcCH
Confidence 3578999998876543
No 121
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.82 E-value=12 Score=22.32 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=10.9
Q ss_pred CCCCcccccccccc
Q psy11807 30 KQICPYCKEKVDLK 43 (88)
Q Consensus 30 ~~tCP~CR~~v~~~ 43 (88)
--.||.|+.++...
T Consensus 10 iL~CP~ck~~L~~~ 23 (67)
T 2jny_A 10 VLACPKDKGPLRYL 23 (67)
T ss_dssp CCBCTTTCCBCEEE
T ss_pred HhCCCCCCCcCeEe
Confidence 45899999987654
No 122
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=26.53 E-value=27 Score=22.84 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=10.1
Q ss_pred CcHhhHHHHHh
Q psy11807 16 FHEFCIRGWCI 26 (88)
Q Consensus 16 FH~~CI~~Wl~ 26 (88)
|...|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999994
No 123
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=26.33 E-value=27 Score=22.85 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=10.1
Q ss_pred CcHhhHHHHHh
Q psy11807 16 FHEFCIRGWCI 26 (88)
Q Consensus 16 FH~~CI~~Wl~ 26 (88)
|...|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999994
No 124
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=26.29 E-value=9.4 Score=21.39 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=8.4
Q ss_pred CCCCccccccc
Q psy11807 30 KQICPYCKEKV 40 (88)
Q Consensus 30 ~~tCP~CR~~v 40 (88)
...||.|++-.
T Consensus 11 ~~~Cp~C~~~~ 21 (89)
T 3msz_A 11 RNGCPYCVWAK 21 (89)
T ss_dssp CTTCHHHHHHH
T ss_pred cCCChhHHHHH
Confidence 46899999753
No 125
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.73 E-value=8.1 Score=23.21 Aligned_cols=14 Identities=29% Similarity=0.614 Sum_probs=12.3
Q ss_pred CCCCcCcHhhHHHH
Q psy11807 11 YCIFIFHEFCIRGW 24 (88)
Q Consensus 11 ~C~H~FH~~CI~~W 24 (88)
.||+.|-..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 68999999999888
No 126
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=25.47 E-value=21 Score=20.37 Aligned_cols=13 Identities=23% Similarity=0.779 Sum_probs=10.3
Q ss_pred CCCcccccccccc
Q psy11807 31 QICPYCKEKVDLK 43 (88)
Q Consensus 31 ~tCP~CR~~v~~~ 43 (88)
-.||.|+.++...
T Consensus 11 L~CP~c~~~L~~~ 23 (56)
T 2kpi_A 11 LACPACHAPLEER 23 (56)
T ss_dssp CCCSSSCSCEEEE
T ss_pred eeCCCCCCcceec
Confidence 4799999987554
No 127
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.37 E-value=22 Score=21.11 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=11.3
Q ss_pred CCCCccccccccccc
Q psy11807 30 KQICPYCKEKVDLKL 44 (88)
Q Consensus 30 ~~tCP~CR~~v~~~~ 44 (88)
--.||.|+.++....
T Consensus 8 iL~CP~ck~~L~~~~ 22 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQ 22 (68)
T ss_dssp CCBCSSSCCBCEEET
T ss_pred heECCCCCCcCeEeC
Confidence 357999999876543
No 128
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.09 E-value=22 Score=21.12 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=10.8
Q ss_pred CCCccccccccccc
Q psy11807 31 QICPYCKEKVDLKL 44 (88)
Q Consensus 31 ~tCP~CR~~v~~~~ 44 (88)
-.||.|+.++....
T Consensus 9 L~CP~ck~~L~~~~ 22 (68)
T 2hf1_A 9 LVCPLCKGPLVFDK 22 (68)
T ss_dssp CBCTTTCCBCEEET
T ss_pred eECCCCCCcCeEeC
Confidence 47999999876543
No 129
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.67 E-value=19 Score=21.73 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=10.4
Q ss_pred CCCCccccccccc
Q psy11807 30 KQICPYCKEKVDL 42 (88)
Q Consensus 30 ~~tCP~CR~~v~~ 42 (88)
...||+|.+++..
T Consensus 9 ~~~CP~Cgkp~~W 21 (68)
T 1lv3_A 9 TVNCPTCGKTVVW 21 (68)
T ss_dssp EEECTTTCCEEEC
T ss_pred cCcCCCCCCcccc
Confidence 3479999999864
No 130
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.62 E-value=24 Score=21.01 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=10.9
Q ss_pred CCCCcccccccccc
Q psy11807 30 KQICPYCKEKVDLK 43 (88)
Q Consensus 30 ~~tCP~CR~~v~~~ 43 (88)
--.||.|+.++...
T Consensus 8 iL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 8 ILACPICKGPLKLS 21 (69)
T ss_dssp TCCCTTTCCCCEEC
T ss_pred heeCCCCCCcCeEe
Confidence 35799999987654
No 131
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.85 E-value=25 Score=20.80 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=21.6
Q ss_pred CCCCcCcHhhHHHHHh---cCCCCCCccccccccc
Q psy11807 11 YCIFIFHEFCIRGWCI---VGKKQICPYCKEKVDL 42 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~---~~~~~tCP~CR~~v~~ 42 (88)
.|.--||..|+.-=-. ....-.||.|+..-..
T Consensus 32 ~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 32 LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 5888899999852211 1245689999986543
No 132
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=23.10 E-value=23 Score=21.14 Aligned_cols=15 Identities=27% Similarity=0.884 Sum_probs=11.3
Q ss_pred CCCCccccccccccc
Q psy11807 30 KQICPYCKEKVDLKL 44 (88)
Q Consensus 30 ~~tCP~CR~~v~~~~ 44 (88)
--.||.|+.++....
T Consensus 8 iL~CP~ck~~L~~~~ 22 (70)
T 2js4_A 8 ILVCPVCKGRLEFQR 22 (70)
T ss_dssp CCBCTTTCCBEEEET
T ss_pred heECCCCCCcCEEeC
Confidence 357999999876543
No 133
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.38 E-value=34 Score=16.85 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.2
Q ss_pred CCCCccccccccc
Q psy11807 30 KQICPYCKEKVDL 42 (88)
Q Consensus 30 ~~tCP~CR~~v~~ 42 (88)
...||.|.+.|-.
T Consensus 3 ~~~C~~C~k~Vy~ 15 (31)
T 1zfo_A 3 NPNCARCGKIVYP 15 (31)
T ss_dssp CCBCSSSCSBCCG
T ss_pred CCcCCccCCEEec
Confidence 3579999999843
No 134
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=22.27 E-value=31 Score=18.66 Aligned_cols=10 Identities=30% Similarity=0.932 Sum_probs=8.1
Q ss_pred CCCccccccc
Q psy11807 31 QICPYCKEKV 40 (88)
Q Consensus 31 ~tCP~CR~~v 40 (88)
..||.|++-.
T Consensus 12 ~~C~~C~~~~ 21 (85)
T 1fo5_A 12 PMCPHCPAAK 21 (85)
T ss_dssp CCSSCCCTHH
T ss_pred CCCCchHHHH
Confidence 5799999764
No 135
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=21.93 E-value=13 Score=24.71 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=20.5
Q ss_pred CCCCcCcHhhHHHHHh---cCCCCCCccccccc
Q psy11807 11 YCIFIFHEFCIRGWCI---VGKKQICPYCKEKV 40 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~---~~~~~tCP~CR~~v 40 (88)
.|.-.||..|+.-=-. ....-.||.|+..-
T Consensus 28 ~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 28 RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 6788899999952211 12356899999753
No 136
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.91 E-value=47 Score=19.72 Aligned_cols=15 Identities=27% Similarity=0.749 Sum_probs=11.4
Q ss_pred CCCCccccccccccc
Q psy11807 30 KQICPYCKEKVDLKL 44 (88)
Q Consensus 30 ~~tCP~CR~~v~~~~ 44 (88)
+..||.||+-+.-++
T Consensus 49 kKycp~c~kHtlhkE 63 (66)
T 3bbo_3 49 RKFCPYCYKHTIHGE 63 (66)
T ss_dssp CCCCCSSSSCCCCCC
T ss_pred EccCCCCCCeeeEEe
Confidence 458999999876554
No 137
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=21.80 E-value=6.5 Score=22.77 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=20.4
Q ss_pred CCCCcCcHhhHHHHHhc--CCCCCCcccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV--GKKQICPYCKEK 39 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~ 39 (88)
.|.-.||..|+..=+.. ...=.||.|+..
T Consensus 25 ~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 25 GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 68888999999854421 223469999865
No 138
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=21.77 E-value=13 Score=22.72 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=8.6
Q ss_pred CCCCccccccc
Q psy11807 30 KQICPYCKEKV 40 (88)
Q Consensus 30 ~~tCP~CR~~v 40 (88)
+.+||.|++-.
T Consensus 24 ~~~Cp~C~~ak 34 (114)
T 3h8q_A 24 KSYCPHSTRVK 34 (114)
T ss_dssp CTTCHHHHHHH
T ss_pred cCCCCcHHHHH
Confidence 47899998654
No 139
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=21.39 E-value=16 Score=20.20 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=8.3
Q ss_pred CCCCccccccc
Q psy11807 30 KQICPYCKEKV 40 (88)
Q Consensus 30 ~~tCP~CR~~v 40 (88)
...||.|++-.
T Consensus 8 ~~~C~~C~~~~ 18 (85)
T 1ego_A 8 RSGCPYCVRAK 18 (85)
T ss_dssp CTTSTHHHHHH
T ss_pred CCCCCCHHHHH
Confidence 46899998653
No 140
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=21.28 E-value=7.4 Score=23.02 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=20.9
Q ss_pred CCCCcCcHhhHHHHHhc---CCCCCCccccccccc
Q psy11807 11 YCIFIFHEFCIRGWCIV---GKKQICPYCKEKVDL 42 (88)
Q Consensus 11 ~C~H~FH~~CI~~Wl~~---~~~~tCP~CR~~v~~ 42 (88)
.|.--||..|+.-=-.. ...-.||.|+..-..
T Consensus 30 ~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 30 ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred CCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 58888999999532110 134579999976433
No 141
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=21.04 E-value=35 Score=23.69 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=10.9
Q ss_pred CCCccccccccccc
Q psy11807 31 QICPYCKEKVDLKL 44 (88)
Q Consensus 31 ~tCP~CR~~v~~~~ 44 (88)
+.||+|++..+..+
T Consensus 3 ~~CpiC~k~Y~~~~ 16 (183)
T 3lqh_A 3 NFCPLCDKCYDDDD 16 (183)
T ss_dssp CBCTTTCCBCTTCC
T ss_pred CcCCCCcCccCCcc
Confidence 57999999876554
No 142
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=20.50 E-value=36 Score=18.36 Aligned_cols=11 Identities=36% Similarity=1.144 Sum_probs=8.5
Q ss_pred CCCCccccccc
Q psy11807 30 KQICPYCKEKV 40 (88)
Q Consensus 30 ~~tCP~CR~~v 40 (88)
...||.|++-.
T Consensus 10 ~~~C~~C~~~~ 20 (85)
T 1nho_A 10 SPTCPYCPMAI 20 (85)
T ss_dssp CSSSCCSTTHH
T ss_pred CCCCcchHHHH
Confidence 35799999764
No 143
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=20.26 E-value=25 Score=19.93 Aligned_cols=10 Identities=50% Similarity=1.374 Sum_probs=7.9
Q ss_pred CCCCcccccc
Q psy11807 30 KQICPYCKEK 39 (88)
Q Consensus 30 ~~tCP~CR~~ 39 (88)
...||.|++-
T Consensus 13 ~~~C~~C~~~ 22 (89)
T 2klx_A 13 RPNCPYCKRA 22 (89)
T ss_dssp CSCCTTTHHH
T ss_pred CCCChhHHHH
Confidence 4689999964
Done!