RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11807
         (88 letters)



>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 29.2 bits (65), Expect = 0.019
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 1  MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD 41
           +ND       C  +    C+  W     +  CP+C+ ++ 
Sbjct: 30 AENDKDVKIEPCGHLMCTSCLTSWQESEGQG-CPFCRCEIK 69


>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 29.0 bits (64), Expect = 0.020
 Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 1/43 (2%)

Query: 1  MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43
           +  +      C     E C+    + G    CP C   +   
Sbjct: 15 RNPSLKLMVNVCGHTLCESCVDLLFVRGAGN-CPECGTPLRKS 56


>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 114

 Score = 29.6 bits (65), Expect = 0.025
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 1  MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQI---CPYCKEKVDLK 43
          +   ++   T C   FH  C+      G K     CP CK     K
Sbjct: 50 LGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95


>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
          [TaxId: 4530]}
          Length = 55

 Score = 27.5 bits (61), Expect = 0.051
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 2  DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKV 40
          D +       C   FH  C+  W  +G    CP C+  V
Sbjct: 17 DGEEARFLPRCGHGFHAECVDMW--LGSHSTCPLCRLTV 53


>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
          {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
          [TaxId: 37296]}
          Length = 60

 Score = 27.5 bits (60), Expect = 0.065
 Identities = 6/38 (15%), Positives = 12/38 (31%)

Query: 6  MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43
              T  +   H  C+  W  + +   C  C    + +
Sbjct: 23 ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR 60


>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
          herpesvirus 1 [TaxId: 10326]}
          Length = 68

 Score = 27.2 bits (60), Expect = 0.096
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVD 41
          C+  F   CI  W    +   CP CK  V+
Sbjct: 24 CLHAFCYVCITRWI--RQNPTCPLCKVPVE 51


>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
          ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 88

 Score = 25.9 bits (56), Expect = 0.44
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 1  MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43
             +       C   FH  CI  W  +  +Q+CP    + + +
Sbjct: 46 TSEECTVAWGVCNHAFHFHCISRW--LKTRQVCPLDNREWEFQ 86


>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
          1 (RAG1), dimerization domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 86

 Score = 25.6 bits (56), Expect = 0.52
 Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 1/41 (2%)

Query: 1  MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD 41
                  +T C  +F   CI     V     CP C+    
Sbjct: 30 EHILADPVETSCKHLFCRICILRCLKVMGSY-CPSCRYPCF 69


>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
          proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 56

 Score = 24.1 bits (52), Expect = 1.1
 Identities = 6/43 (13%), Positives = 9/43 (20%), Gaps = 5/43 (11%)

Query: 1  MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK 43
                     C+      C+           CP C+    L 
Sbjct: 13 QAEAKCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPLG 50


>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 72

 Score = 22.7 bits (48), Expect = 4.5
 Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 2  DNDIMTCKTYCIFIFHEFCIR--GWCIVGKKQICPYCKEK 39
          D + M     C    H  CI       +  K +C  C E 
Sbjct: 27 DGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66


>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 71

 Score = 22.6 bits (48), Expect = 6.0
 Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 2  DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEK 39
             I      C    FH  C+        K  CP C+  
Sbjct: 27 GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 65


>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f
          complex, soluble domain {Mastigocladus laminosus
          [TaxId: 83541]}
          Length = 134

 Score = 22.8 bits (48), Expect = 6.5
 Identities = 7/26 (26%), Positives = 9/26 (34%)

Query: 17 HEFCIRGWCIVGKKQICPYCKEKVDL 42
          H  C+  W     K  CP    + D 
Sbjct: 65 HLGCVVPWNAAENKFKCPCHGSQYDE 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.148    0.547 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,610
Number of extensions: 16301
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 27
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.4 bits)