Query psy11809
Match_columns 240
No_of_seqs 202 out of 346
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 19:34:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymb_A MITD1, MIT domain-conta 100.0 1.1E-96 4E-101 660.4 16.9 234 1-240 22-256 (257)
2 4a5z_A MITD1, MIT domain-conta 100.0 9E-75 3.1E-79 487.5 18.0 155 75-235 8-163 (163)
3 1wfd_A Hypothetical protein 15 99.8 1.1E-20 3.8E-25 145.4 10.4 78 1-78 14-91 (93)
4 4a5x_A MITD1, MIT domain-conta 99.8 3.1E-20 1E-24 141.2 9.5 71 1-71 15-85 (86)
5 2w2u_A Hypothetical P60 katani 99.8 2.9E-20 9.8E-25 140.6 7.5 66 1-66 18-83 (83)
6 2v6y_A AAA family ATPase, P60 99.8 3.4E-20 1.2E-24 139.9 6.7 66 1-66 10-75 (83)
7 2v6x_A Vacuolar protein sortin 99.8 2.2E-18 7.6E-23 129.7 9.8 71 1-71 12-82 (85)
8 2cpt_A SKD1 protein, vacuolar 99.7 2E-17 6.9E-22 132.2 9.7 70 1-70 17-87 (117)
9 2zan_A Vacuolar protein sortin 99.4 2.7E-14 9.3E-19 134.3 0.0 70 1-70 10-80 (444)
10 2dl1_A Spartin; SPG20, MIT, st 97.3 0.0015 5.1E-08 52.0 9.6 68 1-68 21-96 (116)
11 3eab_A Spastin; spastin, MIT, 96.8 0.0034 1.1E-07 47.8 7.0 60 1-60 15-82 (89)
12 2crb_A Nuclear receptor bindin 96.0 0.059 2E-06 41.4 9.8 63 5-67 18-80 (97)
13 2xze_A STAM-binding protein; h 95.6 0.053 1.8E-06 44.2 8.4 66 2-68 40-112 (146)
14 2a9u_A Ubiquitin carboxyl-term 94.8 0.12 4E-06 42.2 8.1 67 2-69 42-114 (144)
15 2rpa_A Katanin P60 ATPase-cont 94.7 0.22 7.5E-06 36.7 8.7 61 4-64 14-74 (78)
16 2hr2_A Hypothetical protein; a 89.4 1.1 3.7E-05 36.8 7.3 80 4-88 59-138 (159)
17 1byr_A Protein (endonuclease); 87.4 7.3 0.00025 29.8 10.7 99 89-205 14-113 (155)
18 3rkv_A Putative peptidylprolyl 85.9 5.9 0.0002 29.6 9.2 35 2-36 11-45 (162)
19 2ff4_A Probable regulatory pro 83.5 1.4 4.9E-05 40.0 5.5 104 13-116 216-329 (388)
20 2hr2_A Hypothetical protein; a 83.5 0.99 3.4E-05 37.0 3.9 31 2-32 11-41 (159)
21 3n71_A Histone lysine methyltr 81.5 7.9 0.00027 36.5 9.9 48 2-50 393-440 (490)
22 1ug7_A 2610208M17RIK protein; 78.9 21 0.00071 28.5 10.0 78 5-100 22-107 (128)
23 3qwp_A SET and MYND domain-con 77.9 7.5 0.00026 35.8 8.4 46 2-48 371-416 (429)
24 4gcn_A Protein STI-1; structur 76.9 2.2 7.6E-05 31.5 3.7 26 6-31 46-71 (127)
25 4gcn_A Protein STI-1; structur 71.4 13 0.00045 27.1 6.8 25 7-31 13-37 (127)
26 3upv_A Heat shock protein STI1 70.9 6 0.00021 28.1 4.7 30 2-31 4-33 (126)
27 2l6j_A TPR repeat-containing p 69.1 7.3 0.00025 26.4 4.6 29 3-31 5-33 (111)
28 3qww_A SET and MYND domain-con 68.4 28 0.00094 32.2 9.7 46 4-50 342-387 (433)
29 3gyz_A Chaperone protein IPGC; 68.2 19 0.00064 27.8 7.4 18 13-30 81-98 (151)
30 4gco_A Protein STI-1; structur 68.2 7 0.00024 28.8 4.7 28 4-31 15-42 (126)
31 3rzi_A Probable 3-deoxy-D-arab 67.9 16 0.00056 34.8 8.0 69 118-199 313-382 (462)
32 1zu2_A Mitochondrial import re 67.6 23 0.0008 28.6 8.0 64 2-69 65-147 (158)
33 4g1t_A Interferon-induced prot 67.0 26 0.00087 30.4 8.7 58 8-65 57-126 (472)
34 3c3r_A Programmed cell death 6 66.2 19 0.00064 32.9 8.0 66 2-67 275-340 (380)
35 3rkv_A Putative peptidylprolyl 65.3 29 0.00098 25.7 7.7 22 8-29 69-90 (162)
36 3n71_A Histone lysine methyltr 63.6 14 0.00049 34.7 6.8 53 3-56 310-362 (490)
37 1ihg_A Cyclophilin 40; ppiase 61.3 23 0.00077 31.4 7.4 33 2-34 223-255 (370)
38 3qwp_A SET and MYND domain-con 59.9 48 0.0016 30.3 9.6 46 4-50 331-376 (429)
39 3sz7_A HSC70 cochaperone (SGT) 58.0 14 0.00046 27.6 4.7 30 2-31 11-40 (164)
40 2kc7_A BFR218_protein; tetratr 58.0 12 0.0004 25.2 3.9 26 5-30 3-28 (99)
41 3vtx_A MAMA; tetratricopeptide 57.9 30 0.001 25.8 6.7 28 4-31 7-34 (184)
42 3rau_A Tyrosine-protein phosph 55.2 49 0.0017 30.0 8.7 65 2-66 252-321 (363)
43 2xcb_A PCRH, regulatory protei 55.1 40 0.0014 24.5 6.8 23 8-30 58-80 (142)
44 1na3_A Designed protein CTPR2; 54.9 20 0.0007 23.1 4.7 27 5-31 12-38 (91)
45 1elw_A TPR1-domain of HOP; HOP 54.1 20 0.0007 23.8 4.7 30 2-31 4-33 (118)
46 3bee_A Putative YFRE protein; 53.0 11 0.00036 27.2 3.1 44 2-52 28-86 (93)
47 3q49_B STIP1 homology and U bo 52.1 22 0.00077 24.9 4.8 30 2-31 9-38 (137)
48 3ma5_A Tetratricopeptide repea 50.0 21 0.0007 24.7 4.2 23 7-29 12-34 (100)
49 2dba_A Smooth muscle cell asso 49.6 19 0.00065 25.3 4.1 29 2-30 28-56 (148)
50 4gco_A Protein STI-1; structur 49.1 24 0.00081 25.7 4.7 18 13-30 92-109 (126)
51 3ma5_A Tetratricopeptide repea 49.0 26 0.00089 24.2 4.7 22 10-31 49-70 (100)
52 3upv_A Heat shock protein STI1 48.8 57 0.002 22.7 6.6 26 5-30 41-66 (126)
53 2fbn_A 70 kDa peptidylprolyl i 48.5 21 0.00073 27.4 4.5 30 2-31 38-67 (198)
54 1zb1_A BRO1 protein; AIP1, BRO 48.3 47 0.0016 30.2 7.4 66 2-67 257-325 (392)
55 3urz_A Uncharacterized protein 48.1 23 0.00077 27.9 4.7 30 2-31 4-33 (208)
56 1nfv_A Bacterioferritin; 24 su 47.7 71 0.0024 25.0 7.7 56 18-73 92-150 (179)
57 1srv_A Protein (groel (HSP60 c 47.6 23 0.00079 28.8 4.6 69 94-169 9-104 (145)
58 2kc7_A BFR218_protein; tetratr 47.4 23 0.0008 23.6 4.1 24 7-30 40-63 (99)
59 3qww_A SET and MYND domain-con 47.1 37 0.0013 31.3 6.6 46 10-56 306-351 (433)
60 1elr_A TPR2A-domain of HOP; HO 46.2 31 0.0011 23.3 4.7 29 3-31 5-33 (131)
61 2xs1_A Programmed cell death 6 45.7 47 0.0016 32.8 7.4 66 2-67 260-325 (704)
62 1a17_A Serine/threonine protei 45.4 30 0.001 24.8 4.7 30 2-31 13-42 (166)
63 1kt0_A FKBP51, 51 kDa FK506-bi 44.9 62 0.0021 29.2 7.7 29 4-32 270-298 (457)
64 4abn_A Tetratricopeptide repea 44.1 64 0.0022 29.1 7.6 19 12-30 268-286 (474)
65 2xcb_A PCRH, regulatory protei 43.8 32 0.0011 25.0 4.7 27 4-30 20-46 (142)
66 2rkk_A Vacuolar protein sortin 43.7 60 0.0021 26.9 6.7 116 3-125 7-133 (168)
67 1na3_A Designed protein CTPR2; 43.6 39 0.0013 21.6 4.7 23 8-30 49-71 (91)
68 3gyz_A Chaperone protein IPGC; 43.5 30 0.001 26.6 4.7 27 4-30 38-64 (151)
69 1qqe_A Vesicular transport pro 43.1 29 0.001 28.8 4.8 27 7-33 82-108 (292)
70 3r9m_A BRO1 domain-containing 43.1 99 0.0034 28.0 8.7 66 2-67 253-333 (376)
71 2lni_A Stress-induced-phosphop 42.8 21 0.0007 24.5 3.3 28 3-30 17-44 (133)
72 3ro3_A PINS homolog, G-protein 42.7 39 0.0013 23.5 4.8 26 7-32 54-79 (164)
73 3ro3_A PINS homolog, G-protein 42.4 40 0.0014 23.4 4.8 32 3-34 10-41 (164)
74 3ro2_A PINS homolog, G-protein 42.3 91 0.0031 24.5 7.5 29 3-31 6-34 (338)
75 2vgx_A Chaperone SYCD; alterna 42.1 34 0.0012 25.6 4.7 27 4-30 23-49 (148)
76 2vyi_A SGTA protein; chaperone 42.0 40 0.0014 22.6 4.7 28 4-31 14-41 (131)
77 2c2l_A CHIP, carboxy terminus 41.6 32 0.0011 28.7 4.8 30 2-31 4-33 (281)
78 2xev_A YBGF; tetratricopeptide 41.4 64 0.0022 22.1 5.8 26 5-30 42-67 (129)
79 3sf4_A G-protein-signaling mod 41.3 91 0.0031 25.7 7.6 30 2-31 9-38 (406)
80 3k9i_A BH0479 protein; putativ 41.3 39 0.0013 23.6 4.7 20 12-31 37-56 (117)
81 4a1g_A Mitotic checkpoint seri 40.6 61 0.0021 26.2 6.1 48 4-60 103-150 (152)
82 2wvi_A Mitotic checkpoint seri 40.6 87 0.003 25.5 7.2 51 3-62 97-147 (164)
83 4a1s_A PINS, partner of inscut 40.5 1E+02 0.0036 25.7 8.0 30 2-31 48-77 (411)
84 1usy_A ATP phosphoribosyltrans 40.2 15 0.00051 31.9 2.6 35 159-209 201-236 (275)
85 2e2a_A Protein (enzyme IIA); h 40.0 52 0.0018 25.1 5.3 34 2-35 20-53 (105)
86 1wcr_A PTS system, N, N'-diace 39.8 53 0.0018 25.0 5.3 34 2-35 18-51 (103)
87 4i17_A Hypothetical protein; T 39.6 39 0.0013 26.2 4.8 27 4-30 9-35 (228)
88 1hxi_A PEX5, peroxisome target 39.6 35 0.0012 24.5 4.2 26 5-30 20-45 (121)
89 3esl_A Checkpoint serine/threo 39.5 87 0.003 26.6 7.2 48 4-60 117-164 (202)
90 3vtx_A MAMA; tetratricopeptide 39.4 34 0.0012 25.5 4.2 25 7-31 112-136 (184)
91 2vgx_A Chaperone SYCD; alterna 39.2 80 0.0027 23.4 6.4 24 7-30 60-83 (148)
92 2xev_A YBGF; tetratricopeptide 38.9 38 0.0013 23.3 4.2 26 5-30 5-30 (129)
93 2fbn_A 70 kDa peptidylprolyl i 38.8 1E+02 0.0036 23.3 7.2 25 6-30 92-116 (198)
94 3u3w_A Transcriptional activat 38.8 55 0.0019 26.9 5.8 28 6-33 200-227 (293)
95 3l8r_A PTCA, putative PTS syst 38.4 55 0.0019 25.7 5.3 34 2-35 37-70 (120)
96 1na0_A Designed protein CTPR3; 38.3 50 0.0017 21.9 4.7 28 4-31 11-38 (125)
97 1qqe_A Vesicular transport pro 38.3 39 0.0013 28.0 4.8 23 11-33 126-149 (292)
98 3k1s_A PTS system, cellobiose- 38.1 57 0.002 25.0 5.3 34 2-35 22-55 (109)
99 2kat_A Uncharacterized protein 37.9 49 0.0017 22.8 4.7 24 7-30 24-47 (115)
100 2l6j_A TPR repeat-containing p 37.9 38 0.0013 22.6 4.0 20 11-30 47-66 (111)
101 3uq3_A Heat shock protein STI1 37.6 34 0.0012 26.3 4.1 27 4-30 7-33 (258)
102 2kck_A TPR repeat; tetratricop 37.5 50 0.0017 21.6 4.5 15 15-29 53-67 (112)
103 1hxi_A PEX5, peroxisome target 37.4 47 0.0016 23.8 4.7 19 12-30 61-79 (121)
104 1p5q_A FKBP52, FK506-binding p 37.3 1.1E+02 0.0036 26.2 7.7 29 4-32 149-177 (336)
105 2v5f_A Prolyl 4-hydroxylase su 37.1 31 0.0011 24.4 3.6 23 8-30 52-74 (104)
106 2ifu_A Gamma-SNAP; membrane fu 35.5 1.2E+02 0.0043 25.0 7.6 18 16-33 129-146 (307)
107 3uoi_A Bacterioferritin, BFR; 35.4 1.4E+02 0.0049 22.6 7.5 54 20-73 91-147 (161)
108 2kck_A TPR repeat; tetratricop 35.4 38 0.0013 22.1 3.6 26 6-31 10-35 (112)
109 3sz7_A HSC70 cochaperone (SGT) 35.2 51 0.0018 24.3 4.7 20 11-30 88-107 (164)
110 1ihg_A Cyclophilin 40; ppiase 35.1 1.3E+02 0.0043 26.5 7.9 24 6-29 277-300 (370)
111 1elr_A TPR2A-domain of HOP; HO 35.0 59 0.002 21.8 4.7 24 7-30 84-107 (131)
112 2k0m_A Uncharacterized protein 34.8 5.9 0.0002 30.5 -0.8 30 196-227 55-97 (104)
113 4i17_A Hypothetical protein; T 34.3 1.3E+02 0.0043 23.1 7.0 45 8-61 123-169 (228)
114 4ga2_A E3 SUMO-protein ligase 34.1 54 0.0019 24.3 4.7 18 13-30 76-93 (150)
115 2qqy_A Sigma B operon; dodecam 34.0 1.4E+02 0.0046 22.1 7.0 50 19-68 91-143 (149)
116 2lni_A Stress-induced-phosphop 33.9 63 0.0021 21.9 4.7 23 7-29 55-77 (133)
117 2e2e_A Formate-dependent nitri 33.8 1.4E+02 0.0048 21.9 7.4 43 13-66 126-168 (177)
118 3k9i_A BH0479 protein; putativ 33.5 49 0.0017 23.1 4.1 22 9-30 68-89 (117)
119 3rac_A Histidine-tRNA ligase; 33.1 17 0.00058 33.1 1.9 38 157-209 278-316 (373)
120 1o3u_A Conserved hypothetical 33.1 61 0.0021 24.8 4.9 35 2-36 16-50 (135)
121 2kat_A Uncharacterized protein 32.8 62 0.0021 22.2 4.5 23 9-31 60-82 (115)
122 1z7m_A ATP phosphoribosyltrans 32.4 31 0.0011 30.9 3.4 35 157-209 253-287 (344)
123 3od1_A ATP phosphoribosyltrans 32.1 20 0.00067 33.0 2.1 39 156-209 242-280 (400)
124 2y3q_A Bacterioferritin; metal 32.0 1.6E+02 0.0055 22.0 7.5 54 20-73 89-145 (158)
125 2qfc_A PLCR protein; TPR, HTH, 32.0 57 0.002 26.7 4.8 28 5-32 199-226 (293)
126 2gw1_A Mitochondrial precursor 31.9 52 0.0018 28.4 4.7 30 2-31 6-35 (514)
127 3mv2_A Coatomer subunit alpha; 31.2 71 0.0024 29.1 5.6 54 4-57 116-170 (325)
128 2if4_A ATFKBP42; FKBP-like, al 31.1 32 0.0011 29.7 3.2 31 2-32 179-209 (338)
129 1wol_A ST0689, 122AA long cons 31.0 72 0.0025 23.7 4.9 35 2-36 11-45 (122)
130 4abn_A Tetratricopeptide repea 31.0 29 0.001 31.4 3.1 30 2-31 198-250 (474)
131 1elw_A TPR1-domain of HOP; HOP 30.7 75 0.0026 20.8 4.5 23 9-31 45-67 (118)
132 3edt_B KLC 2, kinesin light ch 30.6 1.8E+02 0.0062 22.2 8.1 31 6-36 89-119 (283)
133 1hh8_A P67PHOX, NCF-2, neutrop 30.3 22 0.00075 27.1 1.8 27 2-28 6-32 (213)
134 2dba_A Smooth muscle cell asso 29.8 73 0.0025 22.1 4.5 24 6-29 69-92 (148)
135 2fkz_A Bacterioferritin; ferro 29.6 1.7E+02 0.0059 21.7 7.0 54 20-73 89-145 (155)
136 1ufb_A TT1696 protein; structu 29.4 74 0.0025 23.6 4.7 35 2-36 11-45 (127)
137 2vkj_A TM1634; membrane protei 29.2 80 0.0027 24.1 4.7 40 2-48 53-92 (106)
138 2vyi_A SGTA protein; chaperone 29.0 87 0.003 20.8 4.7 22 9-30 53-74 (131)
139 3qb9_A Bacterioferritin, BFR; 28.5 2E+02 0.0069 22.1 7.5 55 19-73 90-147 (174)
140 3gw4_A Uncharacterized protein 28.4 83 0.0028 23.3 4.8 25 8-32 72-96 (203)
141 3edt_B KLC 2, kinesin light ch 28.3 2E+02 0.0068 22.0 8.5 42 7-49 132-173 (283)
142 2ln3_A De novo designed protei 28.1 58 0.002 23.3 3.5 25 160-184 12-36 (83)
143 3u3w_A Transcriptional activat 27.9 74 0.0025 26.0 4.8 28 6-33 159-186 (293)
144 1jgc_A Bacterioferritin, BFR; 27.5 1.9E+02 0.0066 21.6 7.0 54 20-73 89-145 (161)
145 4e51_A Histidine--tRNA ligase; 27.5 42 0.0014 31.3 3.5 34 159-209 260-293 (467)
146 1vp7_A Exodeoxyribonuclease VI 27.4 1.6E+02 0.0055 22.3 6.2 29 3-31 36-66 (100)
147 4aez_C MAD3, mitotic spindle c 27.4 1.4E+02 0.0046 25.7 6.5 47 3-58 151-197 (223)
148 4b4t_Q 26S proteasome regulato 27.4 56 0.0019 27.8 4.1 27 4-30 6-32 (434)
149 3osx_A 60 kDa chaperonin; alph 27.1 23 0.00079 30.3 1.5 80 83-169 10-117 (201)
150 1hh8_A P67PHOX, NCF-2, neutrop 26.6 85 0.0029 23.6 4.7 27 5-31 40-66 (213)
151 3urz_A Uncharacterized protein 26.2 2.2E+02 0.0076 21.9 8.1 23 8-30 60-82 (208)
152 2fo7_A Synthetic consensus TPR 26.0 89 0.003 20.7 4.2 26 5-30 4-29 (136)
153 3gw4_A Uncharacterized protein 25.9 98 0.0033 22.8 4.8 30 4-33 28-57 (203)
154 2qfc_A PLCR protein; TPR, HTH, 25.7 86 0.0029 25.6 4.8 27 7-33 160-186 (293)
155 4g84_A Histidine--tRNA ligase, 25.6 25 0.00084 32.1 1.5 36 159-209 256-291 (464)
156 1p5q_A FKBP52, FK506-binding p 25.6 2.5E+02 0.0086 23.8 8.0 15 15-29 243-257 (336)
157 3nf1_A KLC 1, kinesin light ch 25.3 2.4E+02 0.0083 22.0 8.2 32 4-35 29-60 (311)
158 4ga2_A E3 SUMO-protein ligase 25.3 71 0.0024 23.6 3.9 21 10-30 39-59 (150)
159 2pl2_A Hypothetical conserved 25.2 88 0.003 24.5 4.7 20 12-31 128-147 (217)
160 2yhc_A BAMD, UPF0169 lipoprote 24.9 85 0.0029 24.6 4.5 28 3-30 5-32 (225)
161 3fvb_A Bacterioferritin; niaid 24.8 2.1E+02 0.0072 22.6 7.0 53 21-73 111-166 (182)
162 3ieg_A DNAJ homolog subfamily 24.8 2.1E+02 0.0072 22.8 7.0 27 4-30 5-31 (359)
163 4eqf_A PEX5-related protein; a 24.7 70 0.0024 26.5 4.1 17 14-30 225-241 (365)
164 4etr_A Putative uncharacterize 24.6 2.5E+02 0.0085 21.8 7.9 49 21-69 19-67 (153)
165 2e2e_A Formate-dependent nitri 24.4 1E+02 0.0035 22.7 4.7 24 8-31 50-73 (177)
166 2v5f_A Prolyl 4-hydroxylase su 24.3 1.2E+02 0.0041 21.2 4.8 28 5-32 8-35 (104)
167 3r2k_A Bacterioferritin, BFR; 24.1 2.3E+02 0.0078 21.2 7.0 54 20-73 88-145 (154)
168 4g85_A Histidine-tRNA ligase, 23.7 27 0.00091 32.8 1.4 34 161-209 311-344 (517)
169 2vh1_A FTSQ, cell division pro 23.6 2.1E+02 0.0072 23.1 6.8 57 138-203 101-158 (220)
170 4gyw_A UDP-N-acetylglucosamine 23.1 78 0.0027 31.1 4.7 19 13-31 54-72 (723)
171 3u4t_A TPR repeat-containing p 22.9 83 0.0028 24.5 4.0 21 8-28 9-29 (272)
172 3mkr_B Coatomer subunit alpha; 22.7 95 0.0032 28.2 4.8 54 4-57 104-158 (320)
173 2h6f_A Protein farnesyltransfe 22.7 41 0.0014 30.1 2.4 31 1-31 184-229 (382)
174 1xnf_A Lipoprotein NLPI; TPR, 22.3 1.1E+02 0.0038 23.7 4.7 21 10-30 51-71 (275)
175 1pc2_A Mitochondria fission pr 22.3 1.6E+02 0.0054 23.6 5.6 29 26-54 88-116 (152)
176 2r5s_A Uncharacterized protein 22.3 45 0.0015 25.1 2.3 26 5-30 9-34 (176)
177 3qky_A Outer membrane assembly 22.0 75 0.0026 25.2 3.7 26 4-29 17-42 (261)
178 2ifu_A Gamma-SNAP; membrane fu 21.6 1.3E+02 0.0043 25.0 5.2 24 10-33 163-186 (307)
179 2ond_A Cleavage stimulation fa 21.6 75 0.0026 26.3 3.7 16 14-29 146-161 (308)
180 1ouv_A Conserved hypothetical 21.6 85 0.0029 24.9 3.9 29 2-30 61-106 (273)
181 3gvy_A Bacterioferritin; iron 21.5 2.7E+02 0.0091 21.0 7.1 54 20-73 89-145 (161)
182 3fnb_A Acylaminoacyl peptidase 21.2 4E+02 0.014 23.0 8.7 48 2-49 69-118 (405)
183 2pl2_A Hypothetical conserved 21.1 1.2E+02 0.0041 23.7 4.7 18 13-30 50-67 (217)
184 3ulq_A Response regulator aspa 21.0 1.2E+02 0.0039 25.7 4.8 24 10-33 192-215 (383)
185 3u64_A Protein TP_0956; tetrat 20.8 75 0.0026 28.6 3.7 14 2-15 182-195 (301)
186 3q49_B STIP1 homology and U bo 20.5 2.1E+02 0.0072 19.5 8.4 17 14-30 89-105 (137)
187 4eqf_A PEX5-related protein; a 20.2 81 0.0028 26.1 3.6 26 5-30 68-93 (365)
188 1klx_A Cysteine rich protein B 20.1 1E+02 0.0036 22.6 3.9 15 15-29 74-88 (138)
No 1
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-96 Score=660.39 Aligned_cols=234 Identities=44% Similarity=0.804 Sum_probs=148.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Q psy11809 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIE 80 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g~~~~~~~ 80 (240)
.|++++++||++|++|+|+||+.+|++||++|++++++++|+.+|+.++.|+++||+|||+||++|++++++|++++|++
T Consensus 22 ~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~k~~g~~~~~i~ 101 (257)
T 2ymb_A 22 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEKEDGKYHKQIK 101 (257)
T ss_dssp ---------------------------------------------------------------------------CCEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCceEEEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccchHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHH
Q psy11809 81 IANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQE 160 (240)
Q Consensus 81 i~en~~G~sY~~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~ 160 (240)
|++|+||+||++||||||+++|++|+|+|||||.+||++||||||||+|++|++++.|||+|++|++.. ..+|.
T Consensus 102 I~~n~~G~sY~~lFg~yl~~~~~~i~i~DPYir~~hQ~~Nl~~f~E~~vk~~~~~~~i~L~T~~d~~~~------~~~q~ 175 (257)
T 2ymb_A 102 IEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIE------QVQQS 175 (257)
T ss_dssp ECTTCCSCCHHHHSSTTCSTTCCEEEEECSCCCSHHHHHHHHHHHHHHTC--CCCCEEEEEECCCSSTT------HHHHH
T ss_pred ECCCCccccHHHHHHHHHhcCCeEEEEeCceecchHHHHHHHHHHHHHhhccCccceEEEEecCCCccc------HHHHH
Confidence 999999999999999999877999999999999999999999999999999999999999999998764 77899
Q ss_pred HHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCcccccccC-CCcccccCCCCCccccceEEEEEeccccC
Q psy11809 161 ENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHV-PEFSIGFTDLSLRPCKETVVNIFHRASLI 239 (240)
Q Consensus 161 ~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~~-~~f~~g~~~~~~R~c~et~v~~~~~~~~~ 239 (240)
++|++|++||+++||+|+|+||+|||||+|+|||||+|+|||||||||+| ++||||+||++||+|+||+|||||+++++
T Consensus 176 ~~l~~ik~sl~~~gi~~~~~~~~tiHDR~I~~dnGW~IkigRGLD~fq~~~~~f~lg~~d~~lR~C~et~Vdi~~~~~~~ 255 (257)
T 2ymb_A 176 RGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDIFHKKHTK 255 (257)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCCCCEEEETTSEEEEESSTTCCBCCCSSTTCTTSSCTTSSCBCCEEEEEEEC----
T ss_pred HHHHHHHHHHHhCCCEEEEEECCCccceeEEecCCcEEEecCccccccCCCCcccccccccccCcceeeEEEEEeccccC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999987
Q ss_pred C
Q psy11809 240 K 240 (240)
Q Consensus 240 ~ 240 (240)
+
T Consensus 256 ~ 256 (257)
T 2ymb_A 256 N 256 (257)
T ss_dssp -
T ss_pred C
Confidence 5
No 2
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=100.00 E-value=9e-75 Score=487.53 Aligned_cols=155 Identities=47% Similarity=0.873 Sum_probs=147.9
Q ss_pred cchhhhhcCCCCccchHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCcccc
Q psy11809 75 YHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKT 154 (240)
Q Consensus 75 ~~~~~~i~en~~G~sY~~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~ 154 (240)
...+++|++|+||+||++||||||+++|++|+|||||||++||++||||||||+|++|++++.|||+|++|+.++
T Consensus 8 ~~~~~~i~en~tG~SYe~LFg~YL~~~~~~I~IeDPYIR~~hQi~NfvrF~Ellvk~~~~~~~I~L~T~~d~~~~----- 82 (163)
T 4a5z_A 8 HMDQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIE----- 82 (163)
T ss_dssp EEEEEEECTTCCCCCHHHHHGGGCCTTCCEEEEECSCCCSHHHHHHHHHHHHHHHC--CCCCEEEEEECCCCSTT-----
T ss_pred chhheeeecCCccccHHHHHHHHHhCCceEEEEECCccccHHHHHHHHHHHHHHHhcCCCccEEEEEeCCccccC-----
Confidence 356899999999999999999999988999999999999999999999999999999999999999999998744
Q ss_pred chHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCcccccccC-CCcccccCCCCCccccceEEEEE
Q psy11809 155 ARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHV-PEFSIGFTDLSLRPCKETVVNIF 233 (240)
Q Consensus 155 ~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~~-~~f~~g~~~~~~R~c~et~v~~~ 233 (240)
+++|.++|++|++||+++||+|+|+||+|||||+|+|||||+|||||||||||+| ++||||++|++||+|+||+||||
T Consensus 83 -~~~Q~~~L~~ik~sL~~~gI~l~~~fs~tiHDR~I~~dnGW~IkiGRGLD~fq~~~~~fslg~~d~~lR~C~et~Vdi~ 161 (163)
T 4a5z_A 83 -QVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDIF 161 (163)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCEEEEEECTTCCCCEEEETTSEEEEETTTTCCBCCCSSTTCTTSSCGGGSCBCCEEEEEE
T ss_pred -HHHHHHHHHHHHHHHHHCCCEEEEEeCCCccceEEEecCCeEEEECCCccccccCCCcccccccccccCceeeEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred ec
Q psy11809 234 HR 235 (240)
Q Consensus 234 ~~ 235 (240)
|.
T Consensus 162 ~~ 163 (163)
T 4a5z_A 162 HD 163 (163)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 3
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=99.84 E-value=1.1e-20 Score=145.37 Aligned_cols=78 Identities=36% Similarity=0.563 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Q psy11809 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQ 78 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g~~~~~ 78 (240)
+|++++++||++|++|+|+||+.+|++||++|+.++++++|+.+|+.|+.|+.+||+|||+||.+|++.++.|++|.+
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~~~~g~~~~~ 91 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKEDGKSGPS 91 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999865
No 4
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=141.25 Aligned_cols=71 Identities=38% Similarity=0.651 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy11809 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKK 71 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke 71 (240)
+|++++++||++|++|+|+||+.+|++||++|+.++++++||.+|+.|++|+.+||+|||+||.+|++.++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~~k~ 85 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEKE 85 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 38999999999999999999999999999999999999999999999999999999999999999987654
No 5
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=99.81 E-value=2.9e-20 Score=140.60 Aligned_cols=66 Identities=27% Similarity=0.345 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11809 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL 66 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l 66 (240)
+|++++++||++|++|+|+||+.+|++||++|++++++++|+..|+.+++|+.+|++|||+||.+|
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~~l 83 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKELI 83 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 389999999999999999999999999999999999999999999999999999999999999864
No 6
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=99.80 E-value=3.4e-20 Score=139.89 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11809 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL 66 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l 66 (240)
+|++++++||++|++|+|+||+.+|++||++|++++++++|+..|+.+++|+.+|++|||+||.++
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999999999999999999999999999999999999998
No 7
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.2e-18 Score=129.75 Aligned_cols=71 Identities=30% Similarity=0.447 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy11809 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKK 71 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke 71 (240)
+|+.++++||+.|++|+|+||+.+|++|+++|+.++++++||..|+.|+.|+.+|++|||+||.+|++.+.
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~~~~ 82 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEA 82 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 38899999999999999999999999999999999999999999999999999999999999999987644
No 8
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=99.72 E-value=2e-17 Score=132.25 Aligned_cols=70 Identities=34% Similarity=0.440 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11809 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL-SNKGDQQKIRDKIETYINRAEVLKGKLDEKK 70 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e-~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~k 70 (240)
+|++++++||++|++|+|+|||.+|++||++||.+++++ +++..|+.|+.|+.+||+|||+||.+|+...
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~ 87 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE 87 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 389999999999999999999999999999999999999 7998899999999999999999999998665
No 9
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.39 E-value=2.7e-14 Score=134.32 Aligned_cols=70 Identities=34% Similarity=0.441 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11809 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL-SNKGDQQKIRDKIETYINRAEVLKGKLDEKK 70 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e-~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~k 70 (240)
+|++++++||++|++|+|+||+.+|++||++|+.++++| ++++.|+.|++|+.+||+|||+||.++++.+
T Consensus 10 ~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~~ 80 (444)
T 2zan_A 10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKE 80 (444)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 589999999999999999999999999999999999999 8998899999999999999999999997654
No 10
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.32 E-value=0.0015 Score=51.97 Aligned_cols=68 Identities=18% Similarity=0.338 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCC------h--hhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11809 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSN------K--GDQQKIRDKIETYINRAEVLKGKLDE 68 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d------~--~~K~~lr~Ki~eYl~RAE~LK~~l~~ 68 (240)
+|..++.+|++.|..|+-.+|+.+|++||+.|..++.-..+ + .+-..++.||.+-+.-|..=-..|.+
T Consensus 21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~ 96 (116)
T 2dl1_A 21 KAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK 96 (116)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999976543 1 22345777777776655554444443
No 11
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=96.83 E-value=0.0034 Score=47.81 Aligned_cols=60 Identities=22% Similarity=0.343 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHHHHHHHH
Q psy11809 1 LAQFLLIRAVELDER---GRWTESLTFYQDGVTELLKHVRGLSNK-----GDQQKIRDKIETYINRAE 60 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~~---g~y~EAl~lY~eaI~~Ll~~lK~e~d~-----~~K~~lr~Ki~eYl~RAE 60 (240)
+|.+++.+|...|.. |+-++|+.+|++||+-|..++.-..+. .+-..++.||.+-+.-|.
T Consensus 15 ~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~ 82 (89)
T 3eab_A 15 QAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAK 82 (89)
T ss_dssp HHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999 999999999999999999999765432 334557788877666443
No 12
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=96.05 E-value=0.059 Score=41.39 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLD 67 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~ 67 (240)
.-.+|-.+=+.|+|+||+.|++.|..+|..++|...++...++|.-.-.-+|.-.+-|++..+
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SLqLQrd~HlKQ~~liq~r~k 80 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLLIQERWK 80 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999999999999999999999999999999888877766666776666666554
No 13
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=95.56 E-value=0.053 Score=44.17 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCC------hhhHHHHHHHHHHH-HHHHHHHHHHhhh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSN------KGDQQKIRDKIETY-INRAEVLKGKLDE 68 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d------~~~K~~lr~Ki~eY-l~RAE~LK~~l~~ 68 (240)
|.+++++|-.+-..|+++.|+.+|...+.+++..+..-|| +..+. +..++..= +.++|.||..|..
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~-~l~~l~~~~~~~lE~LK~~L~~ 112 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKD-TVKKLKEIAFPKAEELKAELLK 112 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHH-HHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999977754332 33344 44455555 8999999998876
No 14
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=94.76 E-value=0.12 Score=42.23 Aligned_cols=67 Identities=16% Similarity=0.055 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCC-----hhhHHH-HHHHHHHHHHHHHHHHHHhhhh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSN-----KGDQQK-IRDKIETYINRAEVLKGKLDEK 69 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d-----~~~K~~-lr~Ki~eYl~RAE~LK~~l~~~ 69 (240)
|..+++.|-.+...|+.+.|+.+|..-+.++. .+..-+| +..++. .+..+..-+++||.||..|...
T Consensus 42 a~~L~r~A~~y~~EGd~E~AYilymRy~~L~~-kIpkHpdyk~~~~~~k~~l~k~~~~~vl~~lE~LK~~L~~r 114 (144)
T 2a9u_A 42 ALKIFKTAEECRLDRDEERAYVLYMKYVTVYN-LIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLR 114 (144)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHhcCcchhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999998874 4432222 222333 3566778899999999999764
No 15
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=94.69 E-value=0.22 Score=36.75 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 64 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~ 64 (240)
+-++.|-++=-.|+|+.|+.+|..+++.+-..+..-.||..|..-.+--.+-.+-.|.+|.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk~ 74 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKD 74 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5578888999999999999999999999999998888999987755544444444444443
No 16
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=89.41 E-value=1.1 Score=36.76 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhcC
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIAN 83 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g~~~~~~~i~e 83 (240)
-...+|.-+-+-|+|+||+.+|..||++|...+...||.. ..-++.|.+|+..+...=.-.+....+.+-+++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~-----~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG-----KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH-----HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3456666677779999999999999999998885555432 22233445666555543222222233444444544
Q ss_pred CCCcc
Q psy11809 84 NEKGV 88 (240)
Q Consensus 84 n~~G~ 88 (240)
++.|.
T Consensus 134 ~d~~~ 138 (159)
T 2hr2_A 134 ERKGE 138 (159)
T ss_dssp HCCSC
T ss_pred CcHHH
Confidence 44443
No 17
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=87.43 E-value=7.3 Score=29.75 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=61.9
Q ss_pred chHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHH
Q psy11809 89 TYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQE 168 (240)
Q Consensus 89 sY~~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~ 168 (240)
+....+-.-+++.-++|.|.-||+.. . ++.+.|......=..|++++...... .......+..
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~~~----~---~i~~aL~~a~~rGV~Vril~~~~~~~-------~~~~~~~~~~--- 76 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSFTA----P---DIMKALVAAKKRGVDVKIVIDERGNT-------GRASIAAMNY--- 76 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBCC----H---HHHHHHHHHHHTTCEEEEEEESTTCC-------SHHHHHHHHH---
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEeCC----H---HHHHHHHHHHHCCCEEEEEEeCcccc-------ccccHHHHHH---
Confidence 44556666676655789999999954 2 34444443322335799999765432 1122333444
Q ss_pred HHhccCcEEEEEe-cCCccceEEEecCCeEEEeCCccc
Q psy11809 169 SLRKMKITLNINY-SNTLHDREIVLSNDWVIKIGRGLD 205 (240)
Q Consensus 169 sl~~~gi~l~~~~-~~tiHDR~I~~dnGw~I~igRGLd 205 (240)
|...||.+.+.. ...+|..-+++|+.|.+.=+-.++
T Consensus 77 -L~~~gv~v~~~~~~~~~H~K~~iiD~~~~~iGS~N~~ 113 (155)
T 1byr_A 77 -IANSGIPLRTDSNFPIQHDKVIIVDNVTVETGSFNFT 113 (155)
T ss_dssp -HHHTTCCEEEECSSSCCCCCEEEETTTEEEEESCCBS
T ss_pred -HHHCCCeEEEcCCcccccceEEEECCCEEEEECCCCC
Confidence 445788876532 246999999999888776666555
No 18
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=85.89 E-value=5.9 Score=29.62 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV 36 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l 36 (240)
|..+..+|..+=+.|+|++|+.+|.+||+++-...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~ 45 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLI 45 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999999999766554
No 19
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.48 E-value=1.4 Score=40.00 Aligned_cols=104 Identities=12% Similarity=0.014 Sum_probs=68.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH--H------HHHHHHHHHHhhhhhhccCcchhhhhcCC
Q psy11809 13 DERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIET--Y------INRAEVLKGKLDEKKKMGNYHEQIEIANN 84 (240)
Q Consensus 13 D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~e--Y------l~RAE~LK~~l~~~ke~g~~~~~~~i~en 84 (240)
-..|+..+|+..|...-+.|..-+-.+|+|..++.++.-... - ..-+..+...+...........+..+.++
T Consensus 216 ~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~l~~~ 295 (388)
T 2ff4_A 216 YLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDI 295 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHBCTTSSBCCCEEEET
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCCCCCCCccccchhhhHhhcccccCCCCCeEEEEEC
Confidence 468999999999999999999999889999998877652211 0 11255666666655444333444555566
Q ss_pred CCccchHHhHHHhhccc--ccEEEeeCCcccchh
Q psy11809 85 EKGVTYEKLFGRFLDEN--VEQIDVTDPYIHNKH 116 (240)
Q Consensus 85 ~~G~sY~~lFg~yl~~~--~~~I~ieDPYIr~~h 116 (240)
..|.+|.=-=+++.-|+ -..|.+.||+|...|
T Consensus 296 ~~g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~H 329 (388)
T 2ff4_A 296 ASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHH 329 (388)
T ss_dssp TTCCEEECCSSEEEEESSTTSSEECCCTTSCTTC
T ss_pred CCCcEEEECCCCEEEecCCCCeEEECCCccChhH
Confidence 66766641112222221 147899999998777
No 20
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=83.48 E-value=0.99 Score=36.97 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTEL 32 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~L 32 (240)
|-.+...+..+-+.|+|++|+.+|.+||++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~ 41 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS 41 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 5677889999999999999999999999854
No 21
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=81.50 E-value=7.9 Score=36.49 Aligned_cols=48 Identities=10% Similarity=-0.065 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRD 50 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~ 50 (240)
|..+.+-|.-+...|+|+||..+|++|++.+...+ +...|...+....
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l-G~~Hp~~~~~~~~ 440 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH-GPSHPITKDLEAM 440 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHH
Confidence 55677788888999999999999999999887776 4456666665433
No 22
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=78.92 E-value=21 Score=28.53 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCcchh
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLS-----NKGDQQKIRDKIETYI-NRAEVLKGKLDEKKKMGNYHEQ 78 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~-----d~~~K~~lr~Ki~eYl-~RAE~LK~~l~~~ke~g~~~~~ 78 (240)
-.++|+++|.=|+..||..-|+.=-..+-..+...- .+..++.|. |+.-.+ -|++.|..
T Consensus 22 sl~Ka~dfDsWGQvvEA~deY~~La~~lkk~~~s~~~~~~fte~qkk~i~-KiatcL~lRsk~Lq~-------------- 86 (128)
T 1ug7_A 22 SLRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIG-KIATCLELRSAALQS-------------- 86 (128)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHH-HHHHHHHHHHHHHHC--------------
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH-HHHHHHHHHHHHHHh--------------
Confidence 468999999999999999999864334444443221 134444444 444444 46666521
Q ss_pred hhhcCCCCccchHHh--HHHhhcc
Q psy11809 79 IEIANNEKGVTYEKL--FGRFLDE 100 (240)
Q Consensus 79 ~~i~en~~G~sY~~l--Fg~yl~~ 100 (240)
..++.|++++.+ ..|+|.+
T Consensus 87 ---~~~~~gi~led~K~l~~~lk~ 107 (128)
T 1ug7_A 87 ---TQSQEEFKLEDLKKLEPILKN 107 (128)
T ss_dssp ---CSCCCSCCSHHHHTHHHHHHT
T ss_pred ---ccCCCCCCHHHHHHHHHHHHH
Confidence 144788899988 8888876
No 23
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=77.91 E-value=7.5 Score=35.79 Aligned_cols=46 Identities=7% Similarity=-0.036 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKI 48 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~l 48 (240)
|..+.+-|.-+...|+|+||+.+|++|++++...+ +...|..++.+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l-G~~Hp~~~~~~ 416 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH-GREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-CCCChHHHHHH
Confidence 56677888889999999999999999999887766 55567666644
No 24
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=76.88 E-value=2.2 Score=31.46 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 6 LIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 6 l~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
...|.-+-..|+|++|+..|.+||++
T Consensus 46 ~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 46 NNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455556678888888888888864
No 25
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=71.39 E-value=13 Score=27.10 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
..+..+=+.|+|++|+.+|.+||++
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~ 37 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL 37 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456667899999999999999974
No 26
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=70.85 E-value=6 Score=28.05 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
|..+...|..+-..|+|++|+.+|.+|++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR 33 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456678889999999999999999999874
No 27
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=69.08 E-value=7.3 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
..+...|..+-..|+|++|+.+|.++++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA 33 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34567788888999999999999999874
No 28
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=68.43 E-value=28 Score=32.20 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRD 50 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~ 50 (240)
.+-.-|.-+...|+|++|+.+|+++++.....+ ++..|..=..+.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-G~~Hp~~a~~l~n 387 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY-PVYSLNVASMWLK 387 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc-CCCChHHHHHHHH
Confidence 344556677889999999999999999887776 4446655444433
No 29
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=68.22 E-value=19 Score=27.84 Aligned_cols=18 Identities=6% Similarity=0.274 Sum_probs=10.4
Q ss_pred HhcCCHHHHHHHHHHHHH
Q psy11809 13 DERGRWTESLTFYQDGVT 30 (240)
Q Consensus 13 D~~g~y~EAl~lY~eaI~ 30 (240)
-..|+|++|+.+|..|+.
T Consensus 81 ~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh
Confidence 345666666666655553
No 30
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=68.21 E-value=7 Score=28.75 Aligned_cols=28 Identities=14% Similarity=0.263 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
..-.++..+=+.|+|++|+.+|.+||++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~ 42 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR 42 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456777888899999999999999863
No 31
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=67.89 E-value=16 Score=34.83 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=57.5
Q ss_pred HhhHHHHHHHHHhcCCCcc-eEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCe
Q psy11809 118 CYNFLQFCELAIKNCKNVK-RINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDW 196 (240)
Q Consensus 118 ~~N~~~f~E~~v~~~~~~~-~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw 196 (240)
-.-++++|+.| ++.+.. ++.|||..-.+. -.+.|-.|-+.....|-...|..|+ +|---|.+++|.
T Consensus 313 p~elv~L~~~L--nP~~epGRlTLI~RmGa~k----------v~~~LP~li~aV~~~G~~VvW~cDP-MHGNT~~~~~G~ 379 (462)
T 3rzi_A 313 PELAVEYVERL--DPHNKPGRLTLVSRMGNHK----------VRDLLPPIVEKVQATGHQVIWQCDP-MHGNTHESSTGF 379 (462)
T ss_dssp HHHHHHHHHHH--CTTCCTTSEEEEECCCTTT----------HHHHHHHHHHHHHHTSCCCEEEECC-STTSEEECTTSC
T ss_pred HHHHHHHHHHh--CCCCCCCeEEEEEccCCch----------hhhhHHHHHHHHHHCCCCeEEEeCC-CCCCceeCCCCC
Confidence 44588888888 455544 999999977655 4678999999999999999999997 999999999998
Q ss_pred EEE
Q psy11809 197 VIK 199 (240)
Q Consensus 197 ~I~ 199 (240)
+.+
T Consensus 380 KTR 382 (462)
T 3rzi_A 380 KTR 382 (462)
T ss_dssp EEE
T ss_pred ccC
Confidence 875
No 32
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=67.56 E-value=23 Score=28.63 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhcC-------------------CHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERG-------------------RWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVL 62 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g-------------------~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~L 62 (240)
|+....+|+++|-.- ++.+|+..|.+|+++|..++...|+.. .-.+..+....|-++
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~----~y~~al~~~~ka~el 140 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT----HYLKSLEMTAKAPQL 140 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHhCHhc
Confidence 666777777776432 334455567777777777776665432 223444557777777
Q ss_pred HHHhhhh
Q psy11809 63 KGKLDEK 69 (240)
Q Consensus 63 K~~l~~~ 69 (240)
--.+..+
T Consensus 141 ~~~~~~~ 147 (158)
T 1zu2_A 141 HAEAYKQ 147 (158)
T ss_dssp HHHHHHS
T ss_pred cCccccc
Confidence 7666655
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=66.99 E-value=26 Score=30.40 Aligned_cols=58 Identities=9% Similarity=0.089 Sum_probs=37.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH------------HHHHHHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIR------------DKIETYINRAEVLKGK 65 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr------------~Ki~eYl~RAE~LK~~ 65 (240)
.|.-.-..|+|++|+.+|++|++++...-..+.++..-..+. .+..+|.++|.+|...
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 455567789999999999999997765544444443322221 2455667777666543
No 34
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=66.22 E-value=19 Score=32.90 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLD 67 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~ 67 (240)
|+..--.|..++.+++|-||+.+++.|.+.+-.+.+.......-+.+..+|..-+++||+-=+.+-
T Consensus 275 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~l~~l~~~i~~~l~~a~kdNd~IY 340 (380)
T 3c3r_A 275 ANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIY 340 (380)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHHHHHhhCeec
Confidence 334445688899999999999999999999888776443333345578889998999988888775
No 35
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=65.31 E-value=29 Score=25.67 Aligned_cols=22 Identities=9% Similarity=-0.091 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDGV 29 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~eaI 29 (240)
.|.-+-+.|+|++|+..|..||
T Consensus 69 la~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 69 MSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH
Confidence 3444444444444444444444
No 36
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=63.63 E-value=14 Score=34.72 Aligned_cols=53 Identities=9% Similarity=-0.012 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYI 56 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl 56 (240)
..++.+|..+...|+|++|+.+|+++++.....+ ++..|..-..+..-..-|.
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~l-g~~Hp~~a~~~~nLa~~y~ 362 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVF-ADTNLYVLRLLSIASEVLS 362 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999998776665 4556766565555444443
No 37
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=61.31 E-value=23 Score=31.42 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLK 34 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~ 34 (240)
|..+...|..+-+.|+|++|+.+|.+||+++-.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~ 255 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG 255 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 344667888899999999999999999986654
No 38
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=59.94 E-value=48 Score=30.33 Aligned_cols=46 Identities=11% Similarity=-0.078 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRD 50 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~ 50 (240)
.+-.-|.-+...|+|++|+.+|+++|+.....+ ++..|..=..+.+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~l~n 376 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFF-PGSHPVRGVQVMK 376 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc-CCCChHHHHHHHH
Confidence 344556667889999999999999999877766 4456665444433
No 39
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=58.05 E-value=14 Score=27.61 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
|..+...|..+-..|+|++|+.+|.+++++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 40 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI 40 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677888889999999999999999874
No 40
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=58.01 E-value=12 Score=25.24 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.+.+|..+-..|+|++|+.+|.++++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~ 28 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQ 28 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678888899999999999999886
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=57.89 E-value=30 Score=25.77 Aligned_cols=28 Identities=7% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
-....|..+-+.|+|++|+.+|++||+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~ 34 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKA 34 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456677788899999999999999863
No 42
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=55.22 E-value=49 Score=29.97 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC--ChhhHHH---HHHHHHHHHHHHHHHHHHh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLS--NKGDQQK---IRDKIETYINRAEVLKGKL 66 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~--d~~~K~~---lr~Ki~eYl~RAE~LK~~l 66 (240)
|...-..|..++..++|-||+.+++.|.+.+-.+.+.-+ .....+. +...|..-+++||+==+.+
T Consensus 252 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~~~~~i~~~l~~aekdNd~I 321 (363)
T 3rau_A 252 AVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLAKGQPDTVQDALRFTMDVIGGKYNSAKKDNDFI 321 (363)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhccCcC
Confidence 444556788889999999999999999999988876542 2333322 3345555556555555544
No 43
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=55.06 E-value=40 Score=24.46 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.|.-+-..|+|++|+.+|..|+.
T Consensus 58 lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 58 LGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555555555443
No 44
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=54.88 E-value=20 Score=23.10 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
....|..+-..|+|++|+.+|.++++.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 38 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL 38 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 445677788899999999999999863
No 45
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=54.12 E-value=20 Score=23.77 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
+..+...|..+-..|+|++|+.+|.+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 33 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL 33 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345667788888999999999999998863
No 46
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=52.96 E-value=11 Score=27.16 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q psy11809 2 AQFLLIRAVELDE---------------RGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKI 52 (240)
Q Consensus 2 Ai~ll~~AVe~D~---------------~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki 52 (240)
|..++++|++.|. .|+|++|+..|+. ++...++...+..+...|
T Consensus 28 A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~-------~l~~~p~~~~~~~i~~~I 86 (93)
T 3bee_A 28 VSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL-------LLDSNDPNLDRVTIIESI 86 (93)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHTCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHhhCCCCccHHHHHHHH
Confidence 5566677777654 5566655555555 444444433344444433
No 47
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=52.09 E-value=22 Score=24.89 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
+..+...|..+-..|+|++|+.+|.+++..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 38 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR 38 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 345677888888999999999999999874
No 48
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=50.04 E-value=21 Score=24.75 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGV 29 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI 29 (240)
..|.-+-..|+|++|+.+|.+++
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al 34 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELV 34 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555544
No 49
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.65 E-value=19 Score=25.30 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
+..+...|..+-..|+|++|+.+|.++++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 56 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG 56 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44567788899999999999999998875
No 50
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=49.11 E-value=24 Score=25.74 Aligned_cols=18 Identities=17% Similarity=0.468 Sum_probs=8.8
Q ss_pred HhcCCHHHHHHHHHHHHH
Q psy11809 13 DERGRWTESLTFYQDGVT 30 (240)
Q Consensus 13 D~~g~y~EAl~lY~eaI~ 30 (240)
-..|+|++|+..|+++++
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 334555555555555443
No 51
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=49.01 E-value=26 Score=24.19 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=16.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH
Q psy11809 10 VELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 10 Ve~D~~g~y~EAl~lY~eaI~~ 31 (240)
.-+...|++++|+..|.+|+++
T Consensus 49 ~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 49 KLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 3335678888888888888864
No 52
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=48.84 E-value=57 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
....|.-+-..|+|++|+..|.++++
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 41 YSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455556666666666666666664
No 53
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=48.46 E-value=21 Score=27.40 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
+..+...|..+-..|+|++|+.+|.+|+++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667788889999999999999999874
No 54
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=48.31 E-value=47 Score=30.17 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL---SNKGDQQKIRDKIETYINRAEVLKGKLD 67 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e---~d~~~K~~lr~Ki~eYl~RAE~LK~~l~ 67 (240)
|...--.|..++.+++|-||+.+++.|.+.+-.+.+.- .+...-..+..+|..-+++||+-=+.+-
T Consensus 257 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~d~~~l~~~i~~~l~~a~kdNd~IY 325 (392)
T 1zb1_A 257 SLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSLPFKTWLVEFIDFDGFKETLEKKQKELIKDNDFIY 325 (392)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHGGGCTTTTTTSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 34445568889999999999999999999888887542 1111123677888888888888777774
No 55
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=48.08 E-value=23 Score=27.87 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
+-.++.+|+.+=..|+|++|+.+|.++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 346788999999999999999999999863
No 56
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=47.73 E-value=71 Score=25.02 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy11809 18 WTESLTFYQDGVTELLKHVR---GLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 73 (240)
Q Consensus 18 y~EAl~lY~eaI~~Ll~~lK---~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g 73 (240)
+..|+.....+++.+..++. .+.|+..++.+..-+.+-...+..|..++..-+..|
T Consensus 92 l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~l~~~g 150 (179)
T 1nfv_A 92 YESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLG 150 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34455555555555555443 468999999999999998888888998888766554
No 57
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=47.56 E-value=23 Score=28.81 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=46.8
Q ss_pred HHHhhcc--cccEEEeeCCcc----cchhHHhhHHHHHHHHHhcCCCcc---------------------eEEEeecCCC
Q psy11809 94 FGRFLDE--NVEQIDVTDPYI----HNKHQCYNFLQFCELAIKNCKNVK---------------------RINLLTTYAD 146 (240)
Q Consensus 94 Fg~yl~~--~~~~I~ieDPYI----r~~hQ~~N~~~f~E~~v~~~~~~~---------------------~i~L~T~~d~ 146 (240)
..||+-. .-.++.++|||| +....++-++-++|.+++....+- .+..+-...+
T Consensus 9 lSpYfvtd~e~m~~~le~p~ILitdkKIs~i~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l~v~AVKAP 88 (145)
T 1srv_A 9 ISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAP 88 (145)
T ss_dssp SCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECC
T ss_pred cCceeecCccccEEEeeccEEEEecccccCHHHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccceEEEEeCC
Confidence 3578833 235799999999 667778899999999998865421 1222223334
Q ss_pred CCCCccccchHHHHHHHHHHHHH
Q psy11809 147 RPQHSNKTARVKQEENLKQLQES 169 (240)
Q Consensus 147 ~~~~~~~~~~~~q~~~l~~i~~s 169 (240)
+- .+.+++.|+.|.--
T Consensus 89 gf-------Gd~Rk~~L~DiAil 104 (145)
T 1srv_A 89 GF-------GDRRKEMLKDIAAV 104 (145)
T ss_dssp SS-------HHHHHHHHHHHHHH
T ss_pred Cc-------chhhHHHHHHHHHH
Confidence 44 67888888888653
No 58
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=47.44 E-value=23 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
..|.-+-..|+|++|+.+|.++++
T Consensus 40 ~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 40 LMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445566777777777777765
No 59
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=47.06 E-value=37 Score=31.33 Aligned_cols=46 Identities=9% Similarity=-0.070 Sum_probs=32.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q psy11809 10 VELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYI 56 (240)
Q Consensus 10 Ve~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl 56 (240)
-...+.|+|+||+.+|+++++.....+ +...|..-..+..-..-|.
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~~~nLa~~y~ 351 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVF-EDSNVYMLHMMYQAMGVCL 351 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCcc-ChhchHHHHHHHHHHHHHH
Confidence 344567899999999999998776665 4556776666655544444
No 60
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=46.15 E-value=31 Score=23.28 Aligned_cols=29 Identities=7% Similarity=-0.015 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
..+...|..+-..|+|++|+.+|.++++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 33 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL 33 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34566777888899999999999999874
No 61
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=45.70 E-value=47 Score=32.76 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLD 67 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~ 67 (240)
|...--.|..++..++|.||+.+++.|.+.+-.+.+.......-..+..+|..-+++||+-=+.+-
T Consensus 260 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~IY 325 (704)
T 2xs1_A 260 ANAEYHQSILAKQQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIY 325 (704)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHHHHHhhCeee
Confidence 344455688899999999999999999998887775433222234578888888999888877775
No 62
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=45.36 E-value=30 Score=24.77 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
|..+...|..+-..|+|++|+.+|.++++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 42 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL 42 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345667788888899999999999998873
No 63
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=44.92 E-value=62 Score=29.17 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTEL 32 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~L 32 (240)
.+..+|..+-+.|+|++|+.+|.+||++.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~ 298 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL 298 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 45577888889999999999999999853
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=44.08 E-value=64 Score=29.12 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=14.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q psy11809 12 LDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 12 ~D~~g~y~EAl~lY~eaI~ 30 (240)
+-..|+|++|+.+|.+|++
T Consensus 268 ~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 268 HKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3346888888888888876
No 65
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=43.82 E-value=32 Score=25.00 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.+...|..+-..|+|++|+.+|..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~ 46 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM 46 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 456778888999999999999998885
No 66
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=43.71 E-value=60 Score=26.86 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-----ccCcch
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKK-----MGNYHE 77 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke-----~g~~~~ 77 (240)
..++++|.++++.|+--=|+-|-.-|++..|.. ..+++.. +.-+.+-|+..|+.|..+..... .|..+-
T Consensus 7 ~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~--~~~s~e~----~~~l~~LlD~LE~~K~~~~~~e~~~~~~~~~~~~ 80 (168)
T 2rkk_A 7 ARVVATAKDFDKVGLGIIGYYLQLYAVELILSE--EDRSQEM----TALATELLDTIEAFKKEIGGESEAEDSDKSLHVM 80 (168)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTC--TTCCHHH----HHHHHHHHHHHHHHHHTTC-----------CTTT
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHHHHhc--CCCChHH----HHHHHHHHHHHHHHHHhccccccccccccchhhh
Confidence 467999999999998888887777777765543 3455554 44456789999999998755422 132233
Q ss_pred hhhhcCCCCccch-----HHhHHHhhcccccEEEeeCCcccchhH-HhhHHHHH
Q psy11809 78 QIEIANNEKGVTY-----EKLFGRFLDENVEQIDVTDPYIHNKHQ-CYNFLQFC 125 (240)
Q Consensus 78 ~~~i~en~~G~sY-----~~lFg~yl~~~~~~I~ieDPYIr~~hQ-~~N~~~f~ 125 (240)
+.-|.+...|..| -+||..-+.. .+.=..+..-+|.++= ...|..+|
T Consensus 81 ~~~i~d~~~a~a~ve~FAlklF~~Ad~~-drag~~~k~~~k~fy~ta~~F~avl 133 (168)
T 2rkk_A 81 NTLIHDQEKAKIYMLNFTMSLYNEKLKQ-LKDGPWDVMLKRSLWCCIDLFSCIL 133 (168)
T ss_dssp THHHHCHHHHHHHHHHHHHHHHHHHHHH-HHTSCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHH-HhcCCcchhHHHHHHHHHHHHHHHH
Confidence 4456566666666 3788887765 2333333333444552 33354433
No 67
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=43.56 E-value=39 Score=21.62 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.|.-+-..|++++|+.+|.++++
T Consensus 49 l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 49 LGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444557788888888877775
No 68
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=43.54 E-value=30 Score=26.59 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.+...|..+-+.|+|++|+.+|..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~ 64 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI 64 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888999999999999999886
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=43.11 E-value=29 Score=28.76 Aligned_cols=27 Identities=4% Similarity=0.022 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVTELL 33 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~~Ll 33 (240)
..|.-+...|+|++|+.+|.+|+++.-
T Consensus 82 ~lg~~~~~~g~~~~A~~~~~~Al~l~~ 108 (292)
T 1qqe_A 82 EAYKCFKSGGNSVNAVDSLENAIQIFT 108 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344445567999999999999998654
No 70
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=43.07 E-value=99 Score=27.95 Aligned_cols=66 Identities=11% Similarity=0.024 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC------------CChh---hHHHHHHHHHHHHHHHHHHHHHh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL------------SNKG---DQQKIRDKIETYINRAEVLKGKL 66 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e------------~d~~---~K~~lr~Ki~eYl~RAE~LK~~l 66 (240)
|...--.|+.++.+++|.||+..++.|.+.+-.+.+.- ..+. .-+.+...|++-+++||+-=+.+
T Consensus 253 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~I 332 (376)
T 3r9m_A 253 AYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFI 332 (376)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhHHHHHHHHHHHHHHHHHhhccce
Confidence 44455678889999999999999999999888776431 0111 13456677888888888777776
Q ss_pred h
Q psy11809 67 D 67 (240)
Q Consensus 67 ~ 67 (240)
-
T Consensus 333 Y 333 (376)
T 3r9m_A 333 Y 333 (376)
T ss_dssp T
T ss_pred e
Confidence 3
No 71
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=42.85 E-value=21 Score=24.51 Aligned_cols=28 Identities=11% Similarity=0.361 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
..+...|..+-..|+|++|+.+|.++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 44 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK 44 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566778888899999999999998875
No 72
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=42.70 E-value=39 Score=23.45 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVTEL 32 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~~L 32 (240)
..|.-+-..|+|++|+.+|.+++++.
T Consensus 54 ~l~~~~~~~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 54 NLGNAYIFLGEFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34444455666666666666666544
No 73
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=42.37 E-value=40 Score=23.41 Aligned_cols=32 Identities=3% Similarity=-0.118 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVTELLK 34 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~ 34 (240)
..+...|.-+-..|+|++|+.+|.+|++..-.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 41 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 41 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34556777778899999999999999986654
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=42.27 E-value=91 Score=24.51 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
..+...|..+-..|+|++|+.+|.++++.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~ 34 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV 34 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 46778889999999999999999999974
No 75
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=42.13 E-value=34 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.+...|..+-..|+|++|+.+|..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 49 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV 49 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 345678888889999999999988875
No 76
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=42.00 E-value=40 Score=22.63 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
.+...|..+-..|+|++|+.+|.+++..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 41 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL 41 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 4566778888899999999999998863
No 77
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=41.61 E-value=32 Score=28.66 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
|..+...|..+-..|+|++|+.+|.+|+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 33 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR 33 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445667778888888888888888887763
No 78
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=41.44 E-value=64 Score=22.09 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
....|.-+-..|+|++|+..|..+++
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455666677777777777777775
No 79
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=41.34 E-value=91 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
+..+...|..+-..|+|++|+.+|.++++.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV 38 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 566788999999999999999999999975
No 80
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=41.28 E-value=39 Score=23.59 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=15.1
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q psy11809 12 LDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 12 ~D~~g~y~EAl~lY~eaI~~ 31 (240)
+-..|+|++|+.+|.++++.
T Consensus 37 ~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 37 FRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 34578888888888888764
No 81
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.59 E-value=61 Score=26.22 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 60 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE 60 (240)
=...-|.-++..|+|++|-..|+.||+- +.+| .+.|.++..++..|..
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-----~A~P----~~rL~~~~~~F~~R~~ 150 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQN-----QAEP----REFLQQQYRLFQTRLT 150 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCBS----HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCcc----HHHHHHHHHHHHHHhc
Confidence 3456788999999999999999999972 3333 3457777777777643
No 82
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.58 E-value=87 Score=25.55 Aligned_cols=51 Identities=16% Similarity=0.358 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVL 62 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~L 62 (240)
.=.+.-|.-++..|+|.+|-..|+.||+ .+.+| .+.|.++-.++..|...-
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-----~~A~P----~~~L~~~~~~F~~R~~~~ 147 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQ-----QKAEP----LERLQSQHRQFQARVSRQ 147 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCBS----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCc----HHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999997 22333 244777777888877543
No 83
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=40.46 E-value=1e+02 Score=25.74 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
+..+...|..+-..|+|++|+.+|.++++.
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~ 77 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA 77 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 345667888889999999999999999974
No 84
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=40.16 E-value=15 Score=31.85 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHh-ccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy11809 159 QEENLKQLQESLR-KMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 209 (240)
Q Consensus 159 q~~~l~~i~~sl~-~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~ 209 (240)
-.+.|+++.+.|. ..| ...+.||.+ +.||||||-.
T Consensus 201 ~l~~l~~l~~~l~~~~g-~~~~~~D~~---------------lvRgldYYtG 236 (275)
T 1usy_A 201 VREDLLSASSFLQEKFP-TVSVEIDLT---------------LARTIEEYCG 236 (275)
T ss_dssp HHHHHHHHHHHHHHHCS-SSEEEECCC---------------CGGGGGTCSS
T ss_pred HHHHHHHHHHHHHHhcC-CCeEEEecc---------------ccCCCCccCC
Confidence 3788999999999 888 334556653 5899999985
No 85
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=39.96 E-value=52 Score=25.08 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 35 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~ 35 (240)
|.+.+-+|++.=++|+|++|-.+..+|=+.|..+
T Consensus 20 ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~A 53 (105)
T 2e2a_A 20 ARSKLLEALKAAENGDFAKADSLVVEAGSCIAEA 53 (105)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6678889999999999999999999888777665
No 86
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=39.77 E-value=53 Score=24.95 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 35 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~ 35 (240)
|.+.+-+|++.=++|+|++|-.+..+|=+.|..+
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~A 51 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEA 51 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6678889999999999999999999888877765
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=39.63 E-value=39 Score=26.16 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.+...|..+-..|+|++|+.+|.++++
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 35 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLK 35 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344556666666666666666666654
No 88
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=39.55 E-value=35 Score=24.52 Aligned_cols=26 Identities=4% Similarity=0.032 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
....|..+-..|++++|+.+|..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~ 45 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ 45 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777778888888888887775
No 89
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.50 E-value=87 Score=26.57 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 60 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE 60 (240)
=...-|.-++..|+|++|-..|+.||+ -+.+| .+.|.++..++..|..
T Consensus 117 fYe~wA~~lE~~g~~~~A~~Vy~~GI~-----~~A~P----~~rL~~~~~~F~~R~~ 164 (202)
T 3esl_A 117 FYEEFSKLLENAQFFLEAKVLLELGAE-----NNCRP----YNRLLRSLSNYEDRLR 164 (202)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCBS----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCcc----HHHHHHHHHHHHHHHH
Confidence 345678899999999999999999997 12233 3457777788888743
No 90
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=39.40 E-value=34 Score=25.47 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
..|.-+-..|+|++|+.+|+++++.
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 112 KLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHh
Confidence 3455556778999999998888863
No 91
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=39.22 E-value=80 Score=23.39 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
..|.-+-..|+|++|+.+|..++.
T Consensus 60 ~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 60 GLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445555556666666666666554
No 92
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=38.88 E-value=38 Score=23.32 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
+...|..+-..|+|++|+.+|.++++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 30 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLE 30 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56778888899999999999998775
No 93
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=38.81 E-value=1e+02 Score=23.29 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 6 LIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 6 l~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
...|.-+-..|+|++|+.+|..+++
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455556666677777766666665
No 94
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=38.80 E-value=55 Score=26.88 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy11809 6 LIRAVELDERGRWTESLTFYQDGVTELL 33 (240)
Q Consensus 6 l~~AVe~D~~g~y~EAl~lY~eaI~~Ll 33 (240)
..-|.-+-+.|+|++|+.+|.+|+++.-
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445556778999999999999998653
No 95
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=38.38 E-value=55 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 35 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~ 35 (240)
|.+.+-+|++.=++|+|++|-.+..+|=+.|..+
T Consensus 37 ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~A 70 (120)
T 3l8r_A 37 ARSIVHEAFDAMREKNYILAEQKLQEANDELLKA 70 (120)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 6677888888889999999999988887777655
No 96
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=38.27 E-value=50 Score=21.88 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
.+...|..+-..|++++|+.+|.+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 38 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL 38 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677788899999999999998863
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=38.26 E-value=39 Score=27.99 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=18.2
Q ss_pred HHHhc-CCHHHHHHHHHHHHHHHH
Q psy11809 11 ELDER-GRWTESLTFYQDGVTELL 33 (240)
Q Consensus 11 e~D~~-g~y~EAl~lY~eaI~~Ll 33 (240)
-+... |+|++|+.+|++|+++.-
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHH
Confidence 33444 999999999999998654
No 98
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=38.08 E-value=57 Score=25.04 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 35 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~ 35 (240)
|.+.+-+|++.=++|+|++|-.+..+|=+.|..+
T Consensus 22 Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~A 55 (109)
T 3k1s_A 22 ARSFAMEALQFAKQGKMAEADEAMVKAKEAINEA 55 (109)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 6678889999999999999999999988777665
No 99
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=37.93 E-value=49 Score=22.78 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
..|.-+-..|+|++|+.+|.++++
T Consensus 24 ~lg~~~~~~g~~~~A~~~~~~al~ 47 (115)
T 2kat_A 24 TLGKTYAEHEQFDAALPHLRAALD 47 (115)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445667888888888888876
No 100
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=37.86 E-value=38 Score=22.55 Aligned_cols=20 Identities=25% Similarity=0.523 Sum_probs=12.3
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q psy11809 11 ELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 11 e~D~~g~y~EAl~lY~eaI~ 30 (240)
-+-..|+|++|+..|.++++
T Consensus 47 ~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 47 ALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 33456677777766666654
No 101
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=37.58 E-value=34 Score=26.29 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.+...|..+-..|+|++|+.+|.++++
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~ 33 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWE 33 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 102
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=37.51 E-value=50 Score=21.56 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHHH
Q psy11809 15 RGRWTESLTFYQDGV 29 (240)
Q Consensus 15 ~g~y~EAl~lY~eaI 29 (240)
.|+|++|+.+|.+++
T Consensus 53 ~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 53 LERYEEAVDCYNYVI 67 (112)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 444444444444444
No 103
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=37.36 E-value=47 Score=23.79 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=14.8
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q psy11809 12 LDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 12 ~D~~g~y~EAl~lY~eaI~ 30 (240)
+-..|++++|+.+|.+|++
T Consensus 61 ~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 61 QAENEKDGLAIIALNHARM 79 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3457888888888888876
No 104
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=37.31 E-value=1.1e+02 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTEL 32 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~L 32 (240)
.+...|..+-+.|+|++|+.+|.+|+++.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~ 177 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWL 177 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 44567788889999999999999999753
No 105
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=37.12 E-value=31 Score=24.42 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=16.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
-|..+.+.|++++|+.+|++++.
T Consensus 52 L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 52 LSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHh
Confidence 34555677888888888888765
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=35.47 E-value=1.2e+02 Score=25.01 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy11809 16 GRWTESLTFYQDGVTELL 33 (240)
Q Consensus 16 g~y~EAl~lY~eaI~~Ll 33 (240)
|+|++|+.+|++|+++.-
T Consensus 129 g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 777777777777776543
No 107
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=35.43 E-value=1.4e+02 Score=22.56 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy11809 20 ESLTFYQDGVTELLKH---VRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 73 (240)
Q Consensus 20 EAl~lY~eaI~~Ll~~---lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g 73 (240)
.|+.....+++.+..+ ...+.|+...+.+..-+.+....+..|..+++.-+..|
T Consensus 91 ~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~i~~~g 147 (161)
T 3uoi_A 91 ADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMDKLG 147 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444443333 44468999999999999999999999999998776665
No 108
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=35.37 E-value=38 Score=22.15 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 6 LIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 6 l~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
...|..+-..|+|++|+.+|.++++.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~ 35 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL 35 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34567777899999999999998863
No 109
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=35.23 E-value=51 Score=24.28 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=13.6
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q psy11809 11 ELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 11 e~D~~g~y~EAl~lY~eaI~ 30 (240)
-+-..|+|++|+.+|.++++
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 33456777777777777765
No 110
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=35.13 E-value=1.3e+02 Score=26.47 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q psy11809 6 LIRAVELDERGRWTESLTFYQDGV 29 (240)
Q Consensus 6 l~~AVe~D~~g~y~EAl~lY~eaI 29 (240)
...|.-+-+.|+|++|+.+|.+||
T Consensus 277 ~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 277 LNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Confidence 344444445555555555555444
No 111
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=35.05 E-value=59 Score=21.78 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
..|.-+-..|++++|+.+|.++++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 345555667777777777777765
No 112
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=34.81 E-value=5.9 Score=30.49 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=19.0
Q ss_pred eEEEeCCcccccccC-CCcccccC------------CCCCccccc
Q psy11809 196 WVIKIGRGLDIFCHV-PEFSIGFT------------DLSLRPCKE 227 (240)
Q Consensus 196 w~I~igRGLd~fq~~-~~f~~g~~------------~~~~R~c~e 227 (240)
+--|||-|+|.|+-- .. .|.+ |+++|+|.+
T Consensus 55 ~~~KiG~Gi~~i~V~~h~--~~srCFfvvR~DGt~~DFSy~KCv~ 97 (104)
T 2k0m_A 55 ATSKIGPGVRNFEVRSAD--YGTQCFWILRTDGSEERFSYKKCVL 97 (104)
T ss_dssp HHHHHTTCEEEEEEEESS--SSCEEEEEEETTSCEEECCGGGSSC
T ss_pred HHHhcCCCcceEEEecCC--CCCcEEEEEEeCCCeeeeeHHHHhh
Confidence 445788888877742 21 1332 888888865
No 113
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=34.35 E-value=1.3e+02 Score=23.13 Aligned_cols=45 Identities=7% Similarity=0.085 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKG--DQQKIRDKIETYINRAEV 61 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~--~K~~lr~Ki~eYl~RAE~ 61 (240)
.+.-.-..|+|++|+.+|.++++ . +|. .-..+.....-|+..+..
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~-------~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATD-------V--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT-------S--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhccHHHHHHHHHHHHh-------c--CCCcccHHHHHHHHHHHHHHHHH
Confidence 34444455677777777766664 2 444 445566556666666655
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=34.09 E-value=54 Score=24.29 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=13.2
Q ss_pred HhcCCHHHHHHHHHHHHH
Q psy11809 13 DERGRWTESLTFYQDGVT 30 (240)
Q Consensus 13 D~~g~y~EAl~lY~eaI~ 30 (240)
-..|++++|+.+|+++++
T Consensus 76 ~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHHHHHH
Confidence 456777777777777775
No 115
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=34.04 E-value=1.4e+02 Score=22.10 Aligned_cols=50 Identities=18% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11809 19 TESLTFYQDGVTELLKHVRG---LSNKGDQQKIRDKIETYINRAEVLKGKLDE 68 (240)
Q Consensus 19 ~EAl~lY~eaI~~Ll~~lK~---e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~ 68 (240)
+.|+.....++..+..++.. +.|+..++.+..-+.+....+..|..++.+
T Consensus 91 ~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~ 143 (149)
T 2qqy_A 91 EYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLND 143 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555555444444433 689999999999999999999999888853
No 116
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=33.90 E-value=63 Score=21.89 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGV 29 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI 29 (240)
..|.-+-..|++++|+.+|.+++
T Consensus 55 ~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 55 NRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555566666666665554
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=33.77 E-value=1.4e+02 Score=21.88 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=21.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11809 13 DERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL 66 (240)
Q Consensus 13 D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l 66 (240)
-..|+|++|+.+|.+++ +..|+...+. .+...+++|.++....
T Consensus 126 ~~~g~~~~A~~~~~~al-------~~~p~~~~~~----~~~~~i~~~~~~~~~~ 168 (177)
T 2e2e_A 126 FMQANYAQAIELWQKVM-------DLNSPRINRT----QLVESINMAKLLQRRS 168 (177)
T ss_dssp HHTTCHHHHHHHHHHHH-------HTCCTTSCHH----HHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHH-------hhCCCCccHH----HHHHHHHHHHHhcCCC
Confidence 34555555555555544 3343332222 2334566666666554
No 118
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=33.45 E-value=49 Score=23.06 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=15.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q psy11809 9 AVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 9 AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
|.-+-..|++++|+.+|.++++
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334567888888888888775
No 119
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=33.07 E-value=17 Score=33.11 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhccCc-EEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy11809 157 VKQEENLKQLQESLRKMKI-TLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 209 (240)
Q Consensus 157 ~~q~~~l~~i~~sl~~~gi-~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~ 209 (240)
..-.+.|+++.+.|...|| .-.+.||.+ +.||||||-.
T Consensus 278 ~~al~~l~~l~~~L~~~gi~~~~i~~D~~---------------lvRgldYYTG 316 (373)
T 3rac_A 278 RDAWRYLCRLAEALHDSGLASDVVTFDLA---------------LHRELDYYTG 316 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTTEEECTT---------------CCCSCTTCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEeCC---------------ccCCCCccCC
Confidence 4457788999999999998 333445543 5799999874
No 120
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=33.06 E-value=61 Score=24.84 Aligned_cols=35 Identities=23% Similarity=0.028 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV 36 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l 36 (240)
|.+-+..|-.+=+.|.|..|...-++|+++.++++
T Consensus 16 A~~dL~~A~~~l~~g~y~~a~F~aqQA~EkalKAl 50 (135)
T 1o3u_A 16 AKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAV 50 (135)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 66777888888889999999999999999988876
No 121
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=32.82 E-value=62 Score=22.21 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 9 AVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 9 AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
|.-+-..|++++|+.+|.++++.
T Consensus 60 a~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 60 GKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 33445678888999888888864
No 122
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=32.43 E-value=31 Score=30.92 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy11809 157 VKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 209 (240)
Q Consensus 157 ~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~ 209 (240)
.+-.+.|+++.+.|...| .+.||.+ +.||||||-.
T Consensus 253 ~~~l~~l~~l~~~L~~~g---~~~~D~~---------------lvrgldYYtG 287 (344)
T 1z7m_A 253 ISSFDQLKEFSEKLSMIK---PIIIDLG---------------MVPKMDYYTD 287 (344)
T ss_dssp HHHHHHHHHHHHHHTTTS---CCEECTT---------------CCCSSTTCCS
T ss_pred HHHHHHHHHHHHHHhhCC---CEEEeCC---------------CCCCCccCCC
Confidence 345678889999999888 5556653 4799999985
No 123
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=32.08 E-value=20 Score=33.04 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy11809 156 RVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 209 (240)
Q Consensus 156 ~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~ 209 (240)
..+-.+.|++|.+.|...||.-.+.||. .+-||||||-.
T Consensus 242 ~~~~l~~l~~l~~~L~~~gi~~~~~~D~---------------~lvRgldYYTG 280 (400)
T 3od1_A 242 GKTALAEMTKLYEVLESYGASEYVKFDL---------------TLVLHMSYYTG 280 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGEEEET---------------TCCSCSSSCCS
T ss_pred hHHHHHHHHHHHHHHHHcCCCceEEEeC---------------CccCCCcccCC
Confidence 3445778999999999999863344444 35799999875
No 124
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=31.99 E-value=1.6e+02 Score=22.04 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy11809 20 ESLTFYQDGVTELLKHVR---GLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 73 (240)
Q Consensus 20 EAl~lY~eaI~~Ll~~lK---~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g 73 (240)
.|+.....+++.+..+++ .+.|+..++.+..-+.+-...+..|..++..-+..|
T Consensus 89 ~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~l~~~g 145 (158)
T 2y3q_A 89 SDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMG 145 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444433 358999999999999999999999999987765554
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=31.96 E-value=57 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVTEL 32 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~~L 32 (240)
+...|.-+-..|+|++|+.+|.+|+++.
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445666678899999999999999865
No 126
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=31.91 E-value=52 Score=28.39 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
|-.+...|..+-+.|+|++|+.+|.++++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 35 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL 35 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 456677888888889999999888888863
No 127
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.21 E-value=71 Score=29.08 Aligned_cols=54 Identities=7% Similarity=0.062 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHV-RGLSNKGDQQKIRDKIETYIN 57 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l-K~e~d~~~K~~lr~Ki~eYl~ 57 (240)
+.++.|-.+=++|+++||+..+++.|..+.-.+ ..+.+...-+.+..-+.||+-
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYil 170 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYIL 170 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999886554433 222333344446667777764
No 128
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=31.05 E-value=32 Score=29.72 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTEL 32 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~L 32 (240)
|..+...|..+-+.|+|.+|+.+|.+|+.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~ 209 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM 209 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 3445677888899999999999999999753
No 129
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=31.01 E-value=72 Score=23.71 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV 36 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l 36 (240)
|.+-+..|-.+=..|.|..|...-++|+++.++++
T Consensus 11 A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek~lKal 45 (122)
T 1wol_A 11 AERDLEEARYAKSGGYYELACFLSQQCAEKAVKGL 45 (122)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 56667777777778999999999999999888776
No 130
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=30.95 E-value=29 Score=31.43 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDER-----------------------GRWTESLTFYQDGVTE 31 (240)
Q Consensus 2 Ai~ll~~AVe~D~~-----------------------g~y~EAl~lY~eaI~~ 31 (240)
|++..++|++.+.. |+|++|+.+|.+|+++
T Consensus 198 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 198 SVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 67777888887654 6677777777776653
No 131
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=30.68 E-value=75 Score=20.77 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=15.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 9 AVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 9 AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
|.-+-..|+|++|+.+|.++++.
T Consensus 45 a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 45 SAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHh
Confidence 34444568888888888887763
No 132
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=30.61 E-value=1.8e+02 Score=22.21 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy11809 6 LIRAVELDERGRWTESLTFYQDGVTELLKHV 36 (240)
Q Consensus 6 l~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l 36 (240)
...|.-+-..|+|++|+.+|.++++..-...
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 3455566678999999999999998765543
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=30.26 E-value=22 Score=27.09 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDG 28 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~ea 28 (240)
++.+...|..+-..|+|++|+.+|.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a 32 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV 32 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555666666667777776666655
No 134
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.82 E-value=73 Score=22.10 Aligned_cols=24 Identities=13% Similarity=-0.060 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q psy11809 6 LIRAVELDERGRWTESLTFYQDGV 29 (240)
Q Consensus 6 l~~AVe~D~~g~y~EAl~lY~eaI 29 (240)
...|.-+-..|+|++|+.+|.+++
T Consensus 69 ~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 69 RNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 344445555566666666665554
No 135
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*
Probab=29.61 E-value=1.7e+02 Score=21.65 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy11809 20 ESLTFYQDGVTELLKHV---RGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 73 (240)
Q Consensus 20 EAl~lY~eaI~~Ll~~l---K~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g 73 (240)
.|+.....+++.+..++ ..+.|+..++.+..-+.+....+..+..++..-+..|
T Consensus 89 ~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~i~~~g 145 (155)
T 2fkz_A 89 CDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIG 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444443333333 3457999999999999998888889998887655554
No 136
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=29.43 E-value=74 Score=23.64 Aligned_cols=35 Identities=20% Similarity=0.042 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV 36 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l 36 (240)
|.+-+..|-.+=+.|.|..|...-++|+++.++++
T Consensus 11 A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~lKal 45 (127)
T 1ufb_A 11 ARHNLRHAQGSLGLGDYAWACFAAQQAAEAALKGL 45 (127)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 55667777777778999999999999999888776
No 137
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=29.20 E-value=80 Score=24.06 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKI 48 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~l 48 (240)
|..++-+|-.+=+.|+|.+|+.++.++.. ...||..++.+
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n-------~ten~~i~ki~ 92 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALN-------LSDNEEIKKIA 92 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHc-------cccCHHHHHHH
Confidence 55678889999999999999998888653 24566666554
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=28.99 E-value=87 Score=20.82 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=15.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q psy11809 9 AVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 9 AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
|.-+-..|+|++|+.+|.+++.
T Consensus 53 a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 53 AAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHh
Confidence 3334457788888888888776
No 139
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=28.48 E-value=2e+02 Score=22.11 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy11809 19 TESLTFYQDGVTELLKHV---RGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 73 (240)
Q Consensus 19 ~EAl~lY~eaI~~Ll~~l---K~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g 73 (240)
+.|+.....+++.+..++ ..+.|+..++.+..-+.+....+..|...+..-+..|
T Consensus 90 ~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l~~~l~eEe~h~~~l~~~l~~i~~~g 147 (174)
T 3qb9_A 90 EADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMDKLG 147 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555555555444444 4568999999999999998899999998887655444
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=28.37 E-value=83 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDGVTEL 32 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~eaI~~L 32 (240)
.|.-+-..|+|++|+.+|.+|++.+
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELL 96 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444456677777777777777654
No 141
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=28.30 E-value=2e+02 Score=21.95 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIR 49 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr 49 (240)
..|.-+-..|+|++|+.+|.++++.+.... ...+|..-..+.
T Consensus 132 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~ 173 (283)
T 3edt_B 132 NLALLCQNQGKAEEVEYYYRRALEIYATRL-GPDDPNVAKTKN 173 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHS-CTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHH
Confidence 344445678999999999999998765443 233444433333
No 142
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.14 E-value=58 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhccCcEEEEEecCC
Q psy11809 160 EENLKQLQESLRKMKITLNINYSNT 184 (240)
Q Consensus 160 ~~~l~~i~~sl~~~gi~l~~~~~~t 184 (240)
.+.|-+|.--.-+.|..|.++|++|
T Consensus 12 keelleialkfisqgldlevefdst 36 (83)
T 2ln3_A 12 KEELLEIALKFISQGLDLEVEFDST 36 (83)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCceEEEecCC
Confidence 4557778878888999999999986
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=27.91 E-value=74 Score=26.05 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy11809 6 LIRAVELDERGRWTESLTFYQDGVTELL 33 (240)
Q Consensus 6 l~~AVe~D~~g~y~EAl~lY~eaI~~Ll 33 (240)
..-|.-.-..|+|++|+.+|.+|++.+-
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3445556778899999999999998654
No 144
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Probab=27.51 E-value=1.9e+02 Score=21.62 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy11809 20 ESLTFYQDGVTELLKHVR---GLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 73 (240)
Q Consensus 20 EAl~lY~eaI~~Ll~~lK---~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g 73 (240)
.|+.....+++.+..+++ .+.|+..++.+..-+.+-...+..+..++..-+..|
T Consensus 89 ~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~l~~~g 145 (161)
T 1jgc_A 89 CDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLYDRLG 145 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444433332 347999999999999999999999999987765544
No 145
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=27.46 E-value=42 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy11809 159 QEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 209 (240)
Q Consensus 159 q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~ 209 (240)
-.+.|++|.+.|...||. |.||.++ -||||||-.
T Consensus 260 ~~~~l~~l~~~L~~~gi~--~~~d~~l---------------vRgl~YYtg 293 (467)
T 4e51_A 260 SRAHFEGLQRLLKANNVP--FTINPRL---------------VRGLDYYNL 293 (467)
T ss_dssp HHHHHHHHHHHHHHTTCC--EEECTTC---------------CCSCTTCCS
T ss_pred HHHHHHHHHHHHHHcCCe--EEEcCcc---------------ccCccccCC
Confidence 356789999999999986 4455432 488888875
No 146
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=27.43 E-value=1.6e+02 Score=22.27 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERG--RWTESLTFYQDGVTE 31 (240)
Q Consensus 3 i~ll~~AVe~D~~g--~y~EAl~lY~eaI~~ 31 (240)
+.-+.+-|+.=..| ..++|+.+|++|+.+
T Consensus 36 l~eLEeIV~~LE~gel~LEesl~lyeeG~~L 66 (100)
T 1vp7_A 36 LAELESLVSAMENGTLPLEQSLSAYRRGVEL 66 (100)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 33444444444444 457888888888863
No 147
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.38 E-value=1.4e+02 Score=25.71 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINR 58 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~R 58 (240)
.=...-|.-++..|+|++|-..|+.||+- +.+| .+.|.++..++..|
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-----~A~P----~~rL~~~~~~F~~R 197 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRM-----KAKP----FLRFQQKYQQFTHR 197 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCBS----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCcc----HHHHHHHHHHHHHH
Confidence 33556788999999999999999999972 2333 34577777888887
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.37 E-value=56 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
..+.+|-.+=+.|+|++|+..|.++++
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~ 32 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLD 32 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 456788888889999999999999875
No 149
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=27.12 E-value=23 Score=30.29 Aligned_cols=80 Identities=13% Similarity=0.268 Sum_probs=52.1
Q ss_pred CCCCccchHH-hHHHhhcc--cccEEEeeCCccc----chhHHhhHHHHHHHHHhcCCCcc-------------------
Q psy11809 83 NNEKGVTYEK-LFGRFLDE--NVEQIDVTDPYIH----NKHQCYNFLQFCELAIKNCKNVK------------------- 136 (240)
Q Consensus 83 en~~G~sY~~-lFg~yl~~--~~~~I~ieDPYIr----~~hQ~~N~~~f~E~~v~~~~~~~------------------- 136 (240)
.|+-|..||+ -..||+-. .-.++.++||||= ....++-++-++|.+++...++-
T Consensus 10 ~~~~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNkl 89 (201)
T 3osx_A 10 HGSEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNM 89 (201)
T ss_dssp --CCCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCHHHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHH
T ss_pred cCccccEecCccCChheeecccCCEEEecCCeEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhc
Confidence 4555666553 45789843 2358999999994 35668889999999998865431
Q ss_pred --eEEEeecCCCCCCCccccchHHHHHHHHHHHHH
Q psy11809 137 --RINLLTTYADRPQHSNKTARVKQEENLKQLQES 169 (240)
Q Consensus 137 --~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~s 169 (240)
.+..+-...++- .+..++.|+.|.--
T Consensus 90 rg~l~v~AVKAPgF-------GdrRk~~L~DIAil 117 (201)
T 3osx_A 90 RGIVKVASVKAPGF-------GDRRKAMLQDIATL 117 (201)
T ss_dssp HTSCCEEEEECSSC-------HHHHHHHHHHHHHH
T ss_pred cceEEEEEEeCCCC-------ccchhhhhHhHHHH
Confidence 122333333444 67888889988754
No 150
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=26.63 E-value=85 Score=23.64 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
....|.-+-..|+|++|+.+|.++++.
T Consensus 40 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 66 (213)
T 1hh8_A 40 CFNIGCMYTILKNMTEAEKAFTRSINR 66 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445677778899999999999998864
No 151
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=26.23 E-value=2.2e+02 Score=21.86 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=15.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.|.-+-..|+|++|+.+|.++++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666677777777777777665
No 152
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=26.01 E-value=89 Score=20.68 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
....|..+-..|++++|+.+|.++++
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 29 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALE 29 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 34556677788999999999999876
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=25.91 E-value=98 Score=22.84 Aligned_cols=30 Identities=10% Similarity=-0.013 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELL 33 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll 33 (240)
.+...|.-+-..|+|++|+.+|.++++.+-
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 57 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQ 57 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 344566677789999999999999998654
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=25.67 E-value=86 Score=25.64 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy11809 7 IRAVELDERGRWTESLTFYQDGVTELL 33 (240)
Q Consensus 7 ~~AVe~D~~g~y~EAl~lY~eaI~~Ll 33 (240)
..|.-+-..|+|++|+.+|.+|++++-
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 445566778899999999999987544
No 155
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=25.62 E-value=25 Score=32.14 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy11809 159 QEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 209 (240)
Q Consensus 159 q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~ 209 (240)
-.+.|+.+.+.|...|+...+.|+.+ +.||||||-.
T Consensus 256 ~l~~l~~l~~~l~~~g~~~~i~~d~~---------------lvrgldYYtG 291 (464)
T 4g84_A 256 GLGDLKLLFEYLTLFGIDDKISFDLS---------------LARGLDYYTG 291 (464)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEEETT---------------CCCCTTTCSS
T ss_pred HHHHHHHHHhHHHhhCCCcceeeccc---------------ccCCCcCcCC
Confidence 45668888889999998655555543 4699998764
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=25.55 E-value=2.5e+02 Score=23.78 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHHH
Q psy11809 15 RGRWTESLTFYQDGV 29 (240)
Q Consensus 15 ~g~y~EAl~lY~eaI 29 (240)
.|+|++|+.+|.+|+
T Consensus 243 ~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 243 VNDFELARADFQKVL 257 (336)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 344444444444444
No 157
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=25.34 E-value=2.4e+02 Score=21.96 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELLKH 35 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~ 35 (240)
.+...|..+-..|+|++|+.+|.++++.+-..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 60 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999865543
No 158
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=25.33 E-value=71 Score=23.62 Aligned_cols=21 Identities=5% Similarity=-0.045 Sum_probs=15.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q psy11809 10 VELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 10 Ve~D~~g~y~EAl~lY~eaI~ 30 (240)
.-.-+.|+|++|+.+|.++|+
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYIN 59 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 334567888888888888876
No 159
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=25.16 E-value=88 Score=24.47 Aligned_cols=20 Identities=5% Similarity=0.001 Sum_probs=15.3
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q psy11809 12 LDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 12 ~D~~g~y~EAl~lY~eaI~~ 31 (240)
+-..|++++|+.+|.+|++.
T Consensus 128 ~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc
Confidence 34578888888888888764
No 160
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=24.87 E-value=85 Score=24.59 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 3 QFLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
..+...|..+-+.|+|++|+..|.++++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~ 32 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDN 32 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677788888888888888888775
No 161
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=24.84 E-value=2.1e+02 Score=22.61 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy11809 21 SLTFYQDGVTELLKHV---RGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 73 (240)
Q Consensus 21 Al~lY~eaI~~Ll~~l---K~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g 73 (240)
|+.....+++.+..++ ..+.|+...+.+..-+.+....+..|.+.++.-+..|
T Consensus 111 ~l~~E~~~~~~y~~~i~~A~~~~D~~t~~~L~~il~eEe~h~~~l~~~l~~i~~~g 166 (182)
T 3fvb_A 111 DLKGEYDARASYKESREICDKLGDYVSKQLFDELLADEEGHIDFLETQLDLLAKIG 166 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444333333 3458999999999999999999999999998877766
No 162
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=24.77 E-value=2.1e+02 Score=22.76 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
.+...|..+-..|+|++|+.+|.++++
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~ 31 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVD 31 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355667777777888888877777765
No 163
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=24.68 E-value=70 Score=26.49 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=9.5
Q ss_pred hcCCHHHHHHHHHHHHH
Q psy11809 14 ERGRWTESLTFYQDGVT 30 (240)
Q Consensus 14 ~~g~y~EAl~lY~eaI~ 30 (240)
..|+|++|+.+|.++++
T Consensus 225 ~~g~~~~A~~~~~~al~ 241 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALT 241 (365)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 33556666665555554
No 164
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=24.55 E-value=2.5e+02 Score=21.79 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11809 21 SLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEK 69 (240)
Q Consensus 21 Al~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ 69 (240)
.+..=..|+.-+-.++..-.||..|..|...+.+.-..|.+|...+...
T Consensus 19 Li~~~~D~~~gY~~aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~l 67 (153)
T 4etr_A 19 LLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLEL 67 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555556566899999999999999999999999999764
No 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=24.35 E-value=1e+02 Score=22.67 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=17.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~eaI~~ 31 (240)
.|.-+-..|+|++|+.+|.+++..
T Consensus 50 lg~~~~~~~~~~~A~~~~~~al~~ 73 (177)
T 2e2e_A 50 LGEYYLWQNDYSNSLLAYRQALQL 73 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334445678889999988888863
No 166
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=24.32 E-value=1.2e+02 Score=21.20 Aligned_cols=28 Identities=4% Similarity=0.036 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVTEL 32 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~~L 32 (240)
...-|..+=+.|+|..|...|++|++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~ 35 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQL 35 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhh
Confidence 3445666778899999999999999765
No 167
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=24.09 E-value=2.3e+02 Score=21.25 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHH-HHHHHHHHHHHhhhhhhcc
Q psy11809 20 ESLTFYQDGVTELLKH---VRGLSNKGDQQKIRDKIET-YINRAEVLKGKLDEKKKMG 73 (240)
Q Consensus 20 EAl~lY~eaI~~Ll~~---lK~e~d~~~K~~lr~Ki~e-Yl~RAE~LK~~l~~~ke~g 73 (240)
.|+..+..+++.+..+ ...+.|+...+.+..-+.+ ....+..+..++..-+..|
T Consensus 88 ~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~e~ee~h~~~l~~~l~~i~~~g 145 (154)
T 3r2k_A 88 ADLKLERHVRAALAKGIALCEQHKDFVSRDILKAQLADTEEDHAYWLEQQLGLIARMG 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444444444433333 3346899999999999999 8889999999888766665
No 168
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=23.71 E-value=27 Score=32.85 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy11809 161 ENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 209 (240)
Q Consensus 161 ~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~ 209 (240)
+.|..+.+.|...|+...+.|+.+ +.||||||-.
T Consensus 311 ~~l~~l~~~l~~~g~~~~i~~d~~---------------lvrgldYYtG 344 (517)
T 4g85_A 311 GDLKLLFEYLTLFGIDDKISFDLS---------------LARGLDYYTG 344 (517)
T ss_dssp HHHHHHHHHHHHHTCGGGEEECTT---------------CCCCTTTCSS
T ss_pred HHHHHHHHHHHhhCCCcceeeccc---------------cccCCcccCC
Confidence 446667777888888655555543 4699999753
No 169
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=23.61 E-value=2.1e+02 Score=23.12 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=36.1
Q ss_pred EEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEE-EEEecCCccceEEEecCCeEEEeCCc
Q psy11809 138 INLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITL-NINYSNTLHDREIVLSNDWVIKIGRG 203 (240)
Q Consensus 138 i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l-~~~~~~tiHDR~I~~dnGw~I~igRG 203 (240)
+=++|+++.. ...-.+.+.+|...+...+..+ .+.+++. ++=.+.++||-.|.+|++
T Consensus 101 lP~l~G~~~~--------~~~~l~~~~~l~~~l~~~~~~i~~i~~~~~-~~~~l~l~~g~~V~lG~~ 158 (220)
T 2vh1_A 101 LPMLYGPEGS--------ANEVLQGYREMGQMLAKDRFTLKEAAMTAR-RSWQLTLNNDIKLNLGRG 158 (220)
T ss_dssp CCEEECSTTC--------HHHHHHHHHHHHHHHHTTTCCCCEEEECSS-SCEEEECSSSCEEEEESS
T ss_pred CcEEECCCCC--------HHHHHHHHHHHHHHHHhcCceEEEEEECCC-CcEEEEECCCCEEEECCc
Confidence 3455665542 2334466778888887665444 3445542 233688999999999996
No 170
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=23.09 E-value=78 Score=31.11 Aligned_cols=19 Identities=21% Similarity=0.587 Sum_probs=13.8
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q psy11809 13 DERGRWTESLTFYQDGVTE 31 (240)
Q Consensus 13 D~~g~y~EAl~lY~eaI~~ 31 (240)
-+.|++++|+.+|++||++
T Consensus 54 ~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 54 QQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 3567888888888887763
No 171
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=22.87 E-value=83 Score=24.53 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=8.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q psy11809 8 RAVELDERGRWTESLTFYQDG 28 (240)
Q Consensus 8 ~AVe~D~~g~y~EAl~lY~ea 28 (240)
.|..+=..|+|++|+.+|.++
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~ 29 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKL 29 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 333334444444444444443
No 172
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.73 E-value=95 Score=28.16 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHV-RGLSNKGDQQKIRDKIETYIN 57 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l-K~e~d~~~K~~lr~Ki~eYl~ 57 (240)
+.++.|-.+=++|+++||+..+++.|..+.-.+ ..+.+...-+.+..-+.||+-
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYil 158 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIV 158 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHH
Confidence 357888888999999999999999885443222 222233333446666778876
No 173
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=22.67 E-value=41 Score=30.05 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHH
Q psy11809 1 LAQFLLIRAVELDE---------------RGRWTESLTFYQDGVTE 31 (240)
Q Consensus 1 ~Ai~ll~~AVe~D~---------------~g~y~EAl~lY~eaI~~ 31 (240)
+|+....+|+++|. .|+|++|+.+|.++|++
T Consensus 184 eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 184 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
No 174
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=22.33 E-value=1.1e+02 Score=23.68 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=10.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q psy11809 10 VELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 10 Ve~D~~g~y~EAl~lY~eaI~ 30 (240)
.-+-..|+|++|+.+|.++++
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~ 71 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALA 71 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 333445555555555555554
No 175
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=22.29 E-value=1.6e+02 Score=23.58 Aligned_cols=29 Identities=3% Similarity=0.131 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q psy11809 26 QDGVTELLKHVRGLSNKGDQQKIRDKIET 54 (240)
Q Consensus 26 ~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~e 54 (240)
.+|++++-.+++.+|+-..-..+++.|..
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35555555666666655554555544443
No 176
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=22.26 E-value=45 Score=25.07 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
++..|..+-..|++++|+..|.++++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~ 34 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD 34 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778888889999999999988775
No 177
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=21.99 E-value=75 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy11809 4 FLLIRAVELDERGRWTESLTFYQDGV 29 (240)
Q Consensus 4 ~ll~~AVe~D~~g~y~EAl~lY~eaI 29 (240)
.+...|..+-+.|+|++|+.+|.+++
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l 42 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVF 42 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555556666666666555544
No 178
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=21.64 E-value=1.3e+02 Score=24.96 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=18.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHH
Q psy11809 10 VELDERGRWTESLTFYQDGVTELL 33 (240)
Q Consensus 10 Ve~D~~g~y~EAl~lY~eaI~~Ll 33 (240)
.-+-..|+|++|+.+|.+++++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334457899999999999998654
No 179
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=21.62 E-value=75 Score=26.29 Aligned_cols=16 Identities=0% Similarity=0.017 Sum_probs=8.4
Q ss_pred hcCCHHHHHHHHHHHH
Q psy11809 14 ERGRWTESLTFYQDGV 29 (240)
Q Consensus 14 ~~g~y~EAl~lY~eaI 29 (240)
..|++++|...|..|+
T Consensus 146 ~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 3455555555555554
No 180
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=21.62 E-value=85 Score=24.95 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHh-----------------cCCHHHHHHHHHHHHH
Q psy11809 2 AQFLLIRAVELDE-----------------RGRWTESLTFYQDGVT 30 (240)
Q Consensus 2 Ai~ll~~AVe~D~-----------------~g~y~EAl~lY~eaI~ 30 (240)
|++..++|++.+. .+++++|+.+|++|++
T Consensus 61 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 61 AASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
No 181
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=21.50 E-value=2.7e+02 Score=21.04 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHH---HhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy11809 20 ESLTFYQDGVTELLK---HVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 73 (240)
Q Consensus 20 EAl~lY~eaI~~Ll~---~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g 73 (240)
.++..+..+++.+.. ....+.|+..++.+..-+.+.-..+..|.+.+..-+..|
T Consensus 89 ~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~i~~~g 145 (161)
T 3gvy_A 89 ADLAAEHDARTLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMGSIG 145 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444 334568999999999999999999999999988776666
No 182
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}
Probab=21.19 E-value=4e+02 Score=22.98 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC-C-CChhhHHHHH
Q psy11809 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRG-L-SNKGDQQKIR 49 (240)
Q Consensus 2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~-e-~d~~~K~~lr 49 (240)
|-.+..+|-+..++|+-..|-..|..|..++-.+--. . .||...+.+.
T Consensus 69 a~~~~~~a~~~~~~g~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 118 (405)
T 3fnb_A 69 ADYLEDEVERVKKVGYRDLISHLYFSACFSIRAALQFTDPKDSEFMENFR 118 (405)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTCCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHH
Confidence 5567778888999999999999999999888877322 2 3555444433
No 183
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=21.11 E-value=1.2e+02 Score=23.69 Aligned_cols=18 Identities=17% Similarity=-0.075 Sum_probs=11.2
Q ss_pred HhcCCHHHHHHHHHHHHH
Q psy11809 13 DERGRWTESLTFYQDGVT 30 (240)
Q Consensus 13 D~~g~y~EAl~lY~eaI~ 30 (240)
-..|++++|+..|.++++
T Consensus 50 ~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 50 LKLGLVNPALENGKTLVA 67 (217)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 456666666666666654
No 184
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=21.01 E-value=1.2e+02 Score=25.69 Aligned_cols=24 Identities=4% Similarity=0.210 Sum_probs=16.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHH
Q psy11809 10 VELDERGRWTESLTFYQDGVTELL 33 (240)
Q Consensus 10 Ve~D~~g~y~EAl~lY~eaI~~Ll 33 (240)
.-+-..|+|++|+.+|.+|+++.-
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~ 215 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAE 215 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHH
Confidence 334456788888888888887543
No 185
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=20.82 E-value=75 Score=28.60 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhc
Q psy11809 2 AQFLLIRAVELDER 15 (240)
Q Consensus 2 Ai~ll~~AVe~D~~ 15 (240)
|..++.+|+++|..
T Consensus 182 A~a~lerAleLDP~ 195 (301)
T 3u64_A 182 AVMMLERACDLWPS 195 (301)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 66788999999887
No 186
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=20.48 E-value=2.1e+02 Score=19.50 Aligned_cols=17 Identities=18% Similarity=0.263 Sum_probs=8.6
Q ss_pred hcCCHHHHHHHHHHHHH
Q psy11809 14 ERGRWTESLTFYQDGVT 30 (240)
Q Consensus 14 ~~g~y~EAl~lY~eaI~ 30 (240)
..|+|++|+..|.++++
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44555555555555544
No 187
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=20.24 E-value=81 Score=26.08 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809 5 LLIRAVELDERGRWTESLTFYQDGVT 30 (240)
Q Consensus 5 ll~~AVe~D~~g~y~EAl~lY~eaI~ 30 (240)
+...|..+-..|+|++|+.+|.++++
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~ 93 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAIL 93 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=20.05 E-value=1e+02 Score=22.60 Aligned_cols=15 Identities=7% Similarity=0.348 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHHH
Q psy11809 15 RGRWTESLTFYQDGV 29 (240)
Q Consensus 15 ~g~y~EAl~lY~eaI 29 (240)
.+++++|+.+|+.|.
T Consensus 74 ~~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 74 KKDLRKAAQYYSKAC 88 (138)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHH
Confidence 344444444444444
Done!