RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11809
(240 letters)
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 68.4 bits (167), Expect = 2e-15
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
A +L RAVELD R+ ++L YQ+G+ LL+ ++G + +R KI Y++RAE
Sbjct: 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74
Query: 62 LKGKLDEKKKMGN 74
+K LD++K+ G
Sbjct: 75 IKKYLDQEKEDGK 87
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport,
vacuole, endosome, transport, ESCRT-III, VPS2, VPS4,
SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Length = 85
Score = 65.7 bits (160), Expect = 2e-14
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
L+ +A++LD ++ E+ T Y +G+ L+ ++ N + IR K Y+NRAE
Sbjct: 13 GIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQ 72
Query: 62 LKGKLDEKKKMG 73
LK L+ ++
Sbjct: 73 LKKHLESEEANA 84
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 61.2 bits (148), Expect = 2e-12
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR-GLSNKGDQQKIRDKIETYINRAE 60
A L +A + D+ G + E+L YQ V L V+ +Q IR K Y++RAE
Sbjct: 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAE 77
Query: 61 VLKGKLDEKKKMGN 74
LK L K+K
Sbjct: 78 KLKEYLKNKEKKAQ 91
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 53.1 bits (127), Expect = 9e-10
Identities = 14/73 (19%), Positives = 29/73 (39%)
Query: 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 60
+A+ I AV+ D+ G+ +++T+Y+ + L + + + I Y R
Sbjct: 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRIS 69
Query: 61 VLKGKLDEKKKMG 73
L+ L
Sbjct: 70 YLEKVLPASSDGS 82
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 51.6 bits (123), Expect = 3e-09
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 60
+A+ I AV+ D+ G E++T Y+ + L + V + I Y R E
Sbjct: 18 MARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIE 77
Query: 61 VLK 63
VLK
Sbjct: 78 VLK 80
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A
1wr0_A 2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 44.6 bits (105), Expect = 1e-05
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 5 LLIRAVELDERGRWTESLTFYQDGVTELLKHV-RGLSNKGDQQKIRDKIETYINRAEVLK 63
L +A + D+ G + E+L YQ V L V +Q IR K Y++RAE LK
Sbjct: 14 LASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLK 73
Query: 64 GKLDEKKK 71
L +K+K
Sbjct: 74 EYLKKKEK 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 3e-04
Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 49/192 (25%)
Query: 36 VRGLSNKGDQQKIRDKIETY-----------IN--RAEVLKG------KLD---EKKKMG 73
+ L+ + Q + +K ++ +N + V+ G L+ K K
Sbjct: 341 ISNLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 74 NYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCK 133
+ +Q I +E+ + K RFL V P+ H+ L I K
Sbjct: 400 SGLDQSRIPFSERKL---KFSNRFL-------PVASPF-HSHL-----LVPASDLIN--K 441
Query: 134 NVKRINLLTTYAD--RPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIV 191
++ + N+ D P + + + + E + I L + + T
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS-GSISERIVDCIIRLPVKWETTTQ----- 495
Query: 192 LSNDWVIKIGRG 203
++ G G
Sbjct: 496 FKATHILDFGPG 507
Score = 40.4 bits (94), Expect = 4e-04
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 31/112 (27%)
Query: 20 ESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETY----INRAEVLKGKLDEK------ 69
+ ++ + V E++ RG++ + + Y IN V E
Sbjct: 1775 DVMSI-ESLV-EVV-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 70 ---KKMGNYHEQIEIAN-NEKGVTY---------EKLFGRFLDEN-VEQIDV 107
K+ G +EI N N + Y + + L+ +++ID+
Sbjct: 1832 RVGKRTG---WLVEIVNYNVENQQYVAAGDLRALDTV-TNVLNFIKLQKIDI 1879
Score = 36.2 bits (83), Expect = 0.009
Identities = 44/237 (18%), Positives = 77/237 (32%), Gaps = 79/237 (33%)
Query: 58 RAEVLKGKLDE-KKKMGNYHEQIEIANNEKGVTYEKLFGRFL---DENVEQIDV--TDPY 111
A L+ ++ K + E A +++ T +L G+FL VE V D
Sbjct: 29 IASQLQ---EQFNKILPEPTE--GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 112 IHNKHQCY--NFLQFCE--------LAIKNCKNVKRINLLTTY------ADRP---QHSN 152
++ + +L+ + L + VK L+ Y A RP + ++
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 153 KTARVKQEENLK-------Q------LQESLRKMKITLNINYSNTLHD---------REI 190
R E N + Q +E LR + T Y + D E+
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLYQT----YHVLVGDLIKFSAETLSEL 198
Query: 191 VLSNDWVIKI-GRGLDI---------------FCHVPEFS---IGFTDLS--LRPCK 226
+ + K+ +GL+I +P S IG L+ + K
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTAK 254
Score = 35.8 bits (82), Expect = 0.012
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 22/86 (25%)
Query: 161 ENLKQLQESLRKMKITLNINYSNTLH-DREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTD 219
++L L +LRK K ++ S +R++ SN R L + P F +
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN-------RFLPVA--SP-F---HSH 430
Query: 220 LSLRPCKETVVN-------IFHRASL 238
L L P + + F+ +
Sbjct: 431 L-LVPASDLINKDLVKNNVSFNAKDI 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 127 LAIKNCKN----VKRINLLTTYADRPQHSNKTARVKQEENLKQLQESL--RKMKITLNIN 180
L +KNC + ++ + L D N T+R N+K S+ ++ +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQID----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 181 YSNTLHDREIVLSNDWVIKIGRGLDIFCHV 210
Y N L +VL N K ++ C +
Sbjct: 243 YENCL----LVLLNVQNAKAWNAFNLSCKI 268
Score = 36.8 bits (84), Expect = 0.005
Identities = 29/205 (14%), Positives = 61/205 (29%), Gaps = 76/205 (37%)
Query: 74 NYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTD-----PYIHNKHQCYNFLQ----- 123
++H ++ E Y+ + F D V+ D D I +K + + +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 124 ------FCELAIKNCKNVKR-------IN---LLTTYADRP-QHSNKTAR---------- 156
F L K + V++ IN L++ Q S T
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 157 ---------VKQEENLKQLQESLRKMKITLNINYSNTLH----------------DREIV 191
V + + +L+++L +++ N+ + ++
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV----LIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 192 LSND----WVIKIGRGLDIFCHVPE 212
D W + + C+ PE
Sbjct: 178 CKMDFKIFW-LNLKN-----CNSPE 196
Score = 35.2 bits (80), Expect = 0.018
Identities = 38/244 (15%), Positives = 68/244 (27%), Gaps = 87/244 (35%)
Query: 71 KMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQ--FCELA 128
+ N + + +KL + + D + H L+
Sbjct: 188 NLKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 129 IKNC-------KNVKRIN--------LLTT----YADRPQHSNKTARVKQEENLKQLQ-- 167
+NC +N K N LLTT D + T + + + L
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPD 301
Query: 168 ---------------------------------ESLRKMKITLNINYSNTLHDREIVLSN 194
ES+R T + N+ + D+ L+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDK---LTT 357
Query: 195 DWVIKIG-------------RGLDIF---CHVPE--FSIGFTDLSLRPCKETVVNIFHRA 236
+I+ L +F H+P S+ + D+ VVN H+
Sbjct: 358 --IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-DVMVVVNKLHKY 414
Query: 237 SLIK 240
SL++
Sbjct: 415 SLVE 418
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.034
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 12/32 (37%)
Query: 158 KQEENLKQLQESLRKMKI-------TLNINYS 182
KQ LK+LQ SL K+ L I +
Sbjct: 19 KQA--LKKLQASL---KLYADDSAPALAIKAT 45
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 116
Score = 32.4 bits (73), Expect = 0.041
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGD------------QQKIR 49
A + + + DE G+ E+ +Y+ G+ LL+ + S + + QQK++
Sbjct: 22 AFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMK 81
Query: 50 DKIETYINRAEVLKGKLDEKKK 71
+ ++ R E+L+ L +
Sbjct: 82 ETLQNVRTRLEILEKGLATSLQ 103
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 33.6 bits (77), Expect = 0.056
Identities = 10/108 (9%), Positives = 33/108 (30%), Gaps = 19/108 (17%)
Query: 47 KIRDKIETYINRAEVL--KGKLDEKKKMGNYHEQIEI------ANNEKGVTYEKLFGRFL 98
++ ++ +YI A ++ + E + + +++ +G L +
Sbjct: 265 ELFPRVNSYIYMALIMADRNDSTEYYN--YFDKALKLDSNNSSVYYHRGQMNFIL-QNY- 320
Query: 99 DENVE------QIDVTDPYIH-NKHQCYNFLQFCELAIKNCKNVKRIN 139
D+ + ++D + + + + KR
Sbjct: 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 29.4 bits (67), Expect = 1.2
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 16/71 (22%)
Query: 46 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQI 105
+ I++K + Y++R Y + + + + F + I
Sbjct: 97 RVIKEKRDAYVSRLN------------AIYQNNLT----KSHIEIIRGHAAFTSDPKPTI 140
Query: 106 DVTDPYIHNKH 116
+V+ H
Sbjct: 141 EVSGKKYTAPH 151
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 28.3 bits (64), Expect = 2.1
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 29/122 (23%)
Query: 2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGD---------------QQ 46
LL+ + + R S F + + SN G+ +
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92
Query: 47 KIR---DKIETYINRAEVLK--GKLDEKKKMGNYHEQIEI------ANNEKGVTYEKLFG 95
+R D I+ YIN A L G ++ + Y ++ ++ G + L G
Sbjct: 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQ--AYVSALQYNPDLYCVRSDLGNLLKAL-G 149
Query: 96 RF 97
R
Sbjct: 150 RL 151
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 27.8 bits (62), Expect = 2.1
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 160 EENLKQLQESLRKMKITLNINYSNTL----HDREIVLSNDWVIKIG 201
EE ++L + + + HD E+ + D VI+I
Sbjct: 96 EERRRKLITIMERYL-----KKIPQVILVSHDEELKDAADHVIRIS 136
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 28.5 bits (64), Expect = 2.2
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 19/108 (17%)
Query: 47 KIRDKIETYINRAEVL--KGKLDEKKKMGNYHEQIEI------ANNEKGVTYEKLFGRFL 98
+ +YI A L K E K + + +++ +G Y L +
Sbjct: 271 NLHPTPNSYIFLALTLADKENSQEFFK--FFQKAVDLNPEYPPTYYHRGQMYFIL-QDY- 326
Query: 99 DENVE------QIDVTDPYIH-NKHQCYNFLQFCELAIKNCKNVKRIN 139
E ++ + Y + + K
Sbjct: 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 27.1 bits (61), Expect = 4.2
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 28/134 (20%)
Query: 50 DKIETYINRAEVL--KGKLDEKKKMGNYHEQIEIANNE------KGVTYEKLFGRFLDEN 101
+K E + K K Y E I+ A + + KL F E
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVK--AYTEMIKRAPEDARGYSNRAAALAKL-MSF-PEA 192
Query: 102 VE------QIDVTDPYIH-NKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSN-K 153
+ + D + K ++ A++ + + + +N
Sbjct: 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD--------AEVNNGS 244
Query: 154 TARVKQEENLKQLQ 167
+AR + K Q
Sbjct: 245 SAREIDQLYYKASQ 258
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 27.1 bits (61), Expect = 5.9
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 18/71 (25%)
Query: 46 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQI 105
++ + YI + +E G+T RF+D + I
Sbjct: 81 PRLVAGRDRYIGAIN------------SFWDGYVE----RLGITRVDGHARFVDAH--TI 122
Query: 106 DVTDPYIHNKH 116
+V + H
Sbjct: 123 EVEGQRLSADH 133
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 27.1 bits (59), Expect = 6.7
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 104 QIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKR--INLLTTYAD 146
+I DP I N+ C F + C A R IN LT++ D
Sbjct: 17 KIPPNDPRIKNQADCIPFFRSCP-ACPGSNITIRNQINALTSFVD 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 27.0 bits (61), Expect = 7.6
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 159 QEENLKQLQESLRKMKITLNINYSNTL----HDREIVLSNDWVIKIGRG 203
+ + L ++L+K++ + NT+ HD E++ + D +I IG G
Sbjct: 499 PRDTER-LIKTLKKLR-----DLGNTVIVVEHDEEVIRNADHIIDIGPG 541
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 26.8 bits (60), Expect = 8.0
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 18/67 (26%)
Query: 44 DQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVE 103
D ++ + ++ +I Y + EK V YE +G+F+ +
Sbjct: 117 DWDRMIEAVQNHIGSLN------------WGYRVALR----EKKVVYENAYGQFIGPH-- 158
Query: 104 QIDVTDP 110
+I T+
Sbjct: 159 RIKATNN 165
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 26.7 bits (60), Expect = 8.1
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 16/71 (22%)
Query: 46 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQI 105
+K+ I+R E G Y E ++ V + F+DE+ ++
Sbjct: 103 EKLVAAKNKEISRLE------------GLYREGLQ----NSNVHIYESRAVFVDEHTLEL 146
Query: 106 DVTDPYIHNKH 116
VT I +
Sbjct: 147 SVTGERISAEK 157
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 26.8 bits (60), Expect = 8.3
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 17/67 (25%)
Query: 44 DQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVE 103
+ +K+ + +Y N+ +G+ + +G +N
Sbjct: 94 NWKKLIAAKNEAVLDIN------------KSYEGMF---NDTEGLDFFLGWGSLESKN-- 136
Query: 104 QIDVTDP 110
+ V +
Sbjct: 137 VVVVRET 143
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 26.7 bits (60), Expect = 8.5
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 18/71 (25%)
Query: 46 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQI 105
+ + YI+R +Y + + V K F RF+D +
Sbjct: 82 ETLIASRTAYIDRIH------------TSYENVLG----KNNVDVIKGFARFVDAK--TL 123
Query: 106 DVTDPYIHNKH 116
+V I H
Sbjct: 124 EVNGETITADH 134
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A
{Vibrio vulnificus}
Length = 648
Score = 26.8 bits (59), Expect = 9.0
Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 10 VELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 60
V + ++G D V +++++V + ++ + +++ E
Sbjct: 570 VNVGDQGEINIDFINEGDTVEDMMRYV-HIDVDQIRKNYHSLVSQRVDQEE 619
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 26.4 bits (59), Expect = 9.3
Identities = 7/67 (10%), Positives = 24/67 (35%), Gaps = 18/67 (26%)
Query: 44 DQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVE 103
+ + + + ++ ++ + Q++ ++ V Y + F+DE+
Sbjct: 91 NWKTMAEAVQNHVKSLN------------WGHRVQLQ----DRKVKYFNIKASFVDEH-- 132
Query: 104 QIDVTDP 110
+ D
Sbjct: 133 TVRGVDK 139
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 26.7 bits (60), Expect = 9.4
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 166 LQESLRKMKITLNINYSNTL----HDREIVLSNDWVIKIGRG 203
L +L +K N+L HD +++ DW++ +G
Sbjct: 420 LLSALENLK-----RGGNSLFVVEHDLDVIRRADWLVDVGPE 456
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 26.4 bits (59), Expect = 9.7
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 46 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQI 105
+ + ++ +Y + +G+T+ + FG D + +
Sbjct: 92 KALIAAKNKAVSGIN------------DSYEGMFA---DTEGLTFHQGFGALQDNH--TV 134
Query: 106 DVTDP 110
V +
Sbjct: 135 LVRES 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.399
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,622,835
Number of extensions: 210820
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 59
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)